Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024253.01.T01 | AES93798.1 | 83.384 | 331 | 25 | 1 | 5 | 305 | 1 | 331 | 0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024253.01.T01 | Q8LAU9 | 68.539 | 89 | 21 | 1 | 218 | 299 | 172 | 260 | 3.80E-37 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024253.01.T01 | A0A396HLT2 | 83.384 | 331 | 25 | 1 | 5 | 305 | 12 | 342 | 0.0 | 531 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580024253.01.T01 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024253.01.T01 | MTR_5g007600 | 83.384 | 331 | 25 | 1 | 5 | 305 | 1 | 331 | 0.0 | 531 |
| MsG0580024253.01.T01 | MTR_1g046680 | 65.500 | 200 | 54 | 3 | 5 | 189 | 1 | 200 | 4.06e-68 | 213 |
| MsG0580024253.01.T01 | MTR_1g046680 | 80.909 | 110 | 21 | 0 | 196 | 305 | 135 | 244 | 3.83e-61 | 195 |
| MsG0580024253.01.T01 | MTR_8g013950 | 68.293 | 82 | 26 | 0 | 222 | 303 | 215 | 296 | 2.34e-34 | 128 |
| MsG0580024253.01.T01 | MTR_2g094600 | 70.130 | 77 | 23 | 0 | 221 | 297 | 204 | 280 | 3.97e-34 | 127 |
| MsG0580024253.01.T01 | MTR_3g109760 | 61.538 | 91 | 35 | 0 | 212 | 302 | 186 | 276 | 2.27e-33 | 125 |
| MsG0580024253.01.T01 | MTR_1g094930 | 57.143 | 105 | 43 | 2 | 194 | 297 | 108 | 211 | 3.52e-33 | 122 |
| MsG0580024253.01.T01 | MTR_8g076340 | 68.000 | 75 | 24 | 0 | 231 | 305 | 216 | 290 | 3.53e-33 | 124 |
| MsG0580024253.01.T01 | MTR_1g006650 | 74.286 | 70 | 18 | 0 | 233 | 302 | 234 | 303 | 4.59e-33 | 124 |
| MsG0580024253.01.T01 | MTR_1g094930 | 57.143 | 105 | 43 | 2 | 194 | 297 | 203 | 306 | 1.90e-32 | 122 |
| MsG0580024253.01.T01 | MTR_4g071590 | 52.137 | 117 | 50 | 2 | 192 | 302 | 164 | 280 | 1.18e-31 | 120 |
| MsG0580024253.01.T01 | MTR_4g471590 | 52.137 | 117 | 50 | 2 | 192 | 302 | 164 | 280 | 1.18e-31 | 120 |
| MsG0580024253.01.T01 | MTR_6g032830 | 72.059 | 68 | 19 | 0 | 232 | 299 | 191 | 258 | 2.75e-31 | 118 |
| MsG0580024253.01.T01 | MTR_4g058910 | 68.354 | 79 | 25 | 0 | 221 | 299 | 302 | 380 | 3.82e-31 | 120 |
| MsG0580024253.01.T01 | MTR_1g116010 | 66.197 | 71 | 24 | 0 | 231 | 301 | 162 | 232 | 4.94e-31 | 117 |
| MsG0580024253.01.T01 | MTR_5g021340 | 67.123 | 73 | 24 | 0 | 233 | 305 | 300 | 372 | 1.36e-30 | 119 |
| MsG0580024253.01.T01 | MTR_7g085410 | 73.846 | 65 | 17 | 0 | 233 | 297 | 188 | 252 | 3.50e-30 | 115 |
| MsG0580024253.01.T01 | MTR_3g117380 | 62.025 | 79 | 30 | 0 | 224 | 302 | 220 | 298 | 3.81e-30 | 116 |
| MsG0580024253.01.T01 | MTR_7g446110 | 53.731 | 67 | 29 | 1 | 233 | 299 | 187 | 251 | 1.02e-17 | 81.3 |
| MsG0580024253.01.T01 | MTR_7g445980 | 52.857 | 70 | 30 | 2 | 231 | 299 | 31 | 98 | 9.09e-17 | 74.7 |
| MsG0580024253.01.T01 | MTR_7g445950 | 48.684 | 76 | 38 | 1 | 220 | 294 | 106 | 181 | 2.43e-16 | 75.9 |
| MsG0580024253.01.T01 | MTR_7g446070 | 48.000 | 75 | 38 | 1 | 221 | 294 | 119 | 193 | 1.42e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024253.01.T01 | AT3G24050 | 68.539 | 89 | 21 | 1 | 218 | 299 | 172 | 260 | 3.87e-38 | 136 |
| MsG0580024253.01.T01 | AT3G24050 | 30.526 | 190 | 97 | 5 | 28 | 189 | 40 | 222 | 1.27e-13 | 70.1 |
| MsG0580024253.01.T01 | AT4G32890 | 73.611 | 72 | 19 | 0 | 232 | 303 | 196 | 267 | 2.04e-34 | 127 |
| MsG0580024253.01.T01 | AT4G34680 | 54.128 | 109 | 48 | 1 | 196 | 302 | 141 | 249 | 1.12e-33 | 124 |
| MsG0580024253.01.T01 | AT4G34680 | 54.128 | 109 | 48 | 1 | 196 | 302 | 141 | 249 | 1.12e-33 | 124 |
| MsG0580024253.01.T01 | AT5G25830 | 34.130 | 293 | 139 | 8 | 10 | 302 | 50 | 288 | 1.74e-33 | 125 |
| MsG0580024253.01.T01 | AT3G60530 | 61.628 | 86 | 33 | 0 | 215 | 300 | 140 | 225 | 4.68e-32 | 119 |
| MsG0580024253.01.T01 | AT1G08010 | 63.750 | 80 | 29 | 0 | 220 | 299 | 207 | 286 | 9.43e-32 | 120 |
| MsG0580024253.01.T01 | AT1G08010 | 63.750 | 80 | 29 | 0 | 220 | 299 | 207 | 286 | 9.43e-32 | 120 |
| MsG0580024253.01.T01 | AT1G08010 | 63.750 | 80 | 29 | 0 | 220 | 299 | 207 | 286 | 9.43e-32 | 120 |
| MsG0580024253.01.T01 | AT5G66320 | 75.000 | 68 | 17 | 0 | 233 | 300 | 249 | 316 | 9.68e-32 | 121 |
| MsG0580024253.01.T01 | AT5G66320 | 75.000 | 68 | 17 | 0 | 233 | 300 | 249 | 316 | 9.68e-32 | 121 |
| MsG0580024253.01.T01 | AT2G45050 | 70.000 | 70 | 21 | 0 | 233 | 302 | 179 | 248 | 3.84e-31 | 117 |
| MsG0580024253.01.T01 | AT1G08000 | 62.195 | 82 | 31 | 0 | 218 | 299 | 203 | 284 | 3.99e-31 | 119 |
| MsG0580024253.01.T01 | AT1G08000 | 62.195 | 82 | 31 | 0 | 218 | 299 | 203 | 284 | 3.99e-31 | 119 |
| MsG0580024253.01.T01 | AT3G51080 | 68.493 | 73 | 23 | 0 | 233 | 305 | 221 | 293 | 1.98e-30 | 117 |
| MsG0580024253.01.T01 | AT4G36240 | 64.865 | 74 | 26 | 0 | 227 | 300 | 158 | 231 | 5.47e-30 | 114 |
| MsG0580024253.01.T01 | AT3G54810 | 44.444 | 135 | 69 | 2 | 166 | 300 | 168 | 296 | 1.80e-28 | 112 |
| MsG0580024253.01.T01 | AT3G54810 | 44.444 | 135 | 69 | 2 | 166 | 300 | 168 | 296 | 1.80e-28 | 112 |
| MsG0580024253.01.T01 | AT3G45170 | 63.768 | 69 | 25 | 0 | 233 | 301 | 115 | 183 | 1.22e-27 | 107 |
| MsG0580024253.01.T01 | AT2G28340 | 66.667 | 63 | 21 | 0 | 235 | 297 | 193 | 255 | 3.94e-25 | 102 |
Find 78 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGCATTACAAAGTGTTT+TGG | 0.311443 | 5:-2579663 | None:intergenic |
| CTATTTGCAGGGCGGTATTC+AGG | 0.337416 | 5:-2580022 | None:intergenic |
| GGTTTGCTTCGATTGTTCTT+TGG | 0.359998 | 5:-2579873 | None:intergenic |
| ACAGGAAAGTAGTGGAAATA+AGG | 0.364798 | 5:+2580080 | MsG0580024253.01.T01:CDS |
| GTTGTTTCCACGCGAATTGA+TGG | 0.373020 | 5:-2579530 | None:intergenic |
| ATGCATGTGGGGTCAGGTAT+AGG | 0.384736 | 5:+2579984 | MsG0580024253.01.T01:CDS |
| CGAAATATCTGGTTGAATAC+AGG | 0.393474 | 5:-2579337 | None:intergenic |
| CCACGCGAATTGATGGTTCC+AGG | 0.401734 | 5:-2579523 | None:intergenic |
| AGCTGGAAATGCATCTTTGT+TGG | 0.402382 | 5:-2579292 | None:intergenic |
| GCTGTTTCCACGTGAATTGA+CGG | 0.414591 | 5:-2579835 | None:intergenic |
| TCTTTGGATGCTTTGTTACT+CGG | 0.415607 | 5:-2579857 | None:intergenic |
| TCATCAAATGTTTCAACAGC+TGG | 0.422269 | 5:-2579309 | None:intergenic |
| GCCTTGGCATTTCTGATACC+TGG | 0.422871 | 5:+2579505 | MsG0580024253.01.T01:CDS |
| GAAGCAGAAGAGAATGAGAA+TGG | 0.447611 | 5:+2580102 | MsG0580024253.01.T01:CDS |
| GAGCTGATAATACTCCTCTA+TGG | 0.452228 | 5:+2579622 | MsG0580024253.01.T01:CDS |
| CTATGGCGTGCAGGTCCTGC+TGG | 0.452250 | 5:+2579639 | MsG0580024253.01.T01:CDS |
| CTTGTGCTGTTCTCAACAAT+TGG | 0.453321 | 5:-2579378 | None:intergenic |
| GACTTGCTCCGTGCACGGAC+AGG | 0.469909 | 5:-2579468 | None:intergenic |
| TTGATTCTGTGGATGACCTA+TGG | 0.476926 | 5:+2578669 | MsG0580024253.01.T01:CDS |
| TTTGTAATGCATGTGGGGTC+AGG | 0.477301 | 5:+2579978 | MsG0580024253.01.T01:CDS |
| AACAGCATTACACTCTTAAG+TGG | 0.478526 | 5:+2579426 | MsG0580024253.01.T01:CDS |
| GCCTTGGCATTTCTGACACA+TGG | 0.480082 | 5:+2579810 | MsG0580024253.01.T01:CDS |
| ACATTTCCTCCCAATGGTTG+AGG | 0.482486 | 5:-2579894 | None:intergenic |
| CGAAGCAAACCTCAACCATT+GGG | 0.485894 | 5:+2579885 | MsG0580024253.01.T01:CDS |
| GCGAAACAAACCTCAACCAT+TGG | 0.490923 | 5:+2579579 | MsG0580024253.01.T01:CDS |
| TTAAACTTACAGAAAATGAA+TGG | 0.491207 | 5:-2578772 | None:intergenic |
| AAGCAGAAGAGAATGAGAAT+GGG | 0.496918 | 5:+2580103 | MsG0580024253.01.T01:CDS |
| ACATTGCCTCCCAATGGTTG+AGG | 0.497491 | 5:-2579589 | None:intergenic |
| TCGAAGCAAACCTCAACCAT+TGG | 0.499266 | 5:+2579884 | MsG0580024253.01.T01:CDS |
| AGCATTTCCTTCATTTGACC+TGG | 0.504334 | 5:+2578739 | MsG0580024253.01.T01:CDS |
| TATTTCCACTACTTTCCTGT+GGG | 0.505142 | 5:-2580077 | None:intergenic |
| CGAAACAAACCTCAACCATT+GGG | 0.506442 | 5:+2579580 | MsG0580024253.01.T01:CDS |
| ACTTACAGAAAATGAATGGT+TGG | 0.511740 | 5:-2578768 | None:intergenic |
| GATGGAGGCTCTTGATTCTG+TGG | 0.514579 | 5:+2578658 | MsG0580024253.01.T01:CDS |
| GTTCCAGGAGTTTGCAGTAG+AGG | 0.515595 | 5:+2579254 | MsG0580024253.01.T01:intron |
| AATACTCCGCAATGGCGTGC+AGG | 0.516576 | 5:+2579935 | MsG0580024253.01.T01:CDS |
| TGTGGGGTCAGGTATAGGTC+TGG | 0.529286 | 5:+2579989 | MsG0580024253.01.T01:CDS |
| TGAAGTTCCCTGTCCGTGCA+CGG | 0.541394 | 5:+2579460 | MsG0580024253.01.T01:CDS |
| TGGAGTTTCTTATCTGACAT+AGG | 0.541869 | 5:+2578689 | MsG0580024253.01.T01:CDS |
| TTATTTCCACTACTTTCCTG+TGG | 0.542402 | 5:-2580078 | None:intergenic |
| TTGCAGTAGAGGATCTTGAA+TGG | 0.544677 | 5:+2579265 | MsG0580024253.01.T01:CDS |
| AATACTCCTCTATGGCGTGC+AGG | 0.546436 | 5:+2579630 | MsG0580024253.01.T01:CDS |
| ATGAATGGTTGGTATCATCC+AGG | 0.557618 | 5:-2578757 | None:intergenic |
| TGCGAGACTTGCTCCGTGCA+CGG | 0.562316 | 5:-2579473 | None:intergenic |
| ACTTGCTCCGTGCACGGACA+GGG | 0.574860 | 5:-2579467 | None:intergenic |
| GTATCATCCAGGTCAAATGA+AGG | 0.576270 | 5:-2578746 | None:intergenic |
| GCAGGACCTGCACGCCATAG+AGG | 0.577006 | 5:-2579636 | None:intergenic |
| AAAACACTTTGTAATGCATG+TGG | 0.577073 | 5:+2579971 | MsG0580024253.01.T01:CDS |
| ACTTAAGAGTGTAATGCTGT+TGG | 0.577340 | 5:-2579424 | None:intergenic |
| TCTCGCAGTAAGCCTCGCCT+TGG | 0.577592 | 5:+2579489 | MsG0580024253.01.T01:CDS |
| ATGATGACATTTCCTCCCAA+TGG | 0.580868 | 5:-2579900 | None:intergenic |
| AAAACACTTTGTAATGCATG+TGG | 0.583893 | 5:+2579665 | MsG0580024253.01.T01:CDS |
| CAATGGCGTGCAGGTCCCGA+TGG | 0.590689 | 5:+2579944 | MsG0580024253.01.T01:CDS |
| ATTCGTAGTAAGCCTCGCCT+TGG | 0.591249 | 5:+2579794 | MsG0580024253.01.T01:CDS |
| TAATGCCCACAGGAAAGTAG+TGG | 0.591342 | 5:+2580072 | MsG0580024253.01.T01:CDS |
| AACACTTTGTAATGCATGTG+GGG | 0.599838 | 5:+2579667 | MsG0580024253.01.T01:CDS |
| TAATTCCCACAGGAAAGTAG+TGG | 0.608211 | 5:+2579766 | MsG0580024253.01.T01:intron |
| TCCAGGTATCAGAAATGCCA+AGG | 0.610134 | 5:-2579506 | None:intergenic |
| AAACACTTTGTAATGCATGT+GGG | 0.612005 | 5:+2579666 | MsG0580024253.01.T01:CDS |
| TCCATGTGTCAGAAATGCCA+AGG | 0.617962 | 5:-2579811 | None:intergenic |
| AACACTTTGTAATGCATGTG+GGG | 0.618425 | 5:+2579973 | MsG0580024253.01.T01:CDS |
| AAACACTTTGTAATGCATGT+GGG | 0.620936 | 5:+2579972 | MsG0580024253.01.T01:CDS |
| GGGAGGAAATGTCATCATTG+TGG | 0.622937 | 5:+2579905 | MsG0580024253.01.T01:CDS |
| GGGAGGCAATGTCATCATTG+TGG | 0.625233 | 5:+2579600 | MsG0580024253.01.T01:CDS |
| GGCGGTATTCAGGTACAAGT+CGG | 0.632650 | 5:-2580012 | None:intergenic |
| TTTCTTATCTGACATAGGCG+AGG | 0.637448 | 5:+2578694 | MsG0580024253.01.T01:CDS |
| ACGTGCATTCTAATGCCCAC+AGG | 0.637706 | 5:+2580062 | MsG0580024253.01.T01:CDS |
| AACAAACCTCAACCATTGGG+AGG | 0.638620 | 5:+2579583 | MsG0580024253.01.T01:CDS |
| CCTGGAACCATCAATTCGCG+TGG | 0.640359 | 5:+2579523 | MsG0580024253.01.T01:CDS |
| TGTCAGATAAGAAACTCCAT+AGG | 0.643894 | 5:-2578685 | None:intergenic |
| CATGGAACCGTCAATTCACG+TGG | 0.644051 | 5:+2579828 | MsG0580024253.01.T01:CDS |
| TCGGGACCTGCACGCCATTG+CGG | 0.648022 | 5:-2579941 | None:intergenic |
| ATGATGACATTGCCTCCCAA+TGG | 0.653586 | 5:-2579595 | None:intergenic |
| GTGTCAGAAATGCCAAGGCG+AGG | 0.655134 | 5:-2579806 | None:intergenic |
| AGCAAACCTCAACCATTGGG+AGG | 0.655985 | 5:+2579888 | MsG0580024253.01.T01:CDS |
| GTATCAGAAATGCCAAGGCG+AGG | 0.673094 | 5:-2579501 | None:intergenic |
| GAGCTGATAATACTCCGCAA+TGG | 0.677467 | 5:+2579927 | MsG0580024253.01.T01:CDS |
| AAGTTGGGCTATTTGCAGGG+CGG | 0.740794 | 5:-2580030 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACTTACAGAAAATGAA+TGG | - | Chr5:2578775-2578794 | None:intergenic | 20.0% |
| !!! | AAGAGAAAAGTATTATGATT+TGG | + | Chr5:2578888-2578907 | MsG0580024253.01.T01:intron | 20.0% |
| !!! | TACTTTCTAAAATTCTACTT+TGG | - | Chr5:2578955-2578974 | None:intergenic | 20.0% |
| AAAACACTTTGTAATGCATG+TGG | + | Chr5:2579665-2579684 | MsG0580024253.01.T01:CDS | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | + | Chr5:2579666-2579685 | MsG0580024253.01.T01:CDS | 30.0% | |
| ACTTACAGAAAATGAATGGT+TGG | - | Chr5:2578771-2578790 | None:intergenic | 30.0% | |
| AGGAAGACAAGTAAAAATCT+AGG | - | Chr5:2578980-2578999 | None:intergenic | 30.0% | |
| TATTCAAACTGAGATAGATG+TGG | - | Chr5:2579123-2579142 | None:intergenic | 30.0% | |
| TTTAACCTTTCCAAAATGCT+TGG | + | Chr5:2578790-2578809 | MsG0580024253.01.T01:intron | 30.0% | |
| ! | AATGAAGGAAATGCTTTTGT+AGG | - | Chr5:2578734-2578753 | None:intergenic | 30.0% |
| ! | CATACTCGATAATTTTCTCA+CGG | - | Chr5:2578820-2578839 | None:intergenic | 30.0% |
| ! | TCCTTTTTGCATCAATGTAT+TGG | + | Chr5:2578996-2579015 | MsG0580024253.01.T01:intron | 30.0% |
| !! | AATGACTTGTCACTGTTTTA+AGG | + | Chr5:2579081-2579100 | MsG0580024253.01.T01:intron | 30.0% |
| !! | ACATGCATTACAAAGTGTTT+TGG | - | Chr5:2579666-2579685 | None:intergenic | 30.0% |
| !! | CATGCATTACAAAGTGTTTT+TGG | - | Chr5:2579665-2579684 | None:intergenic | 30.0% |
| !! | TTTTGATTCTGCGAAATATC+TGG | - | Chr5:2579351-2579370 | None:intergenic | 30.0% |
| !!! | TATCTAGTTTTGACTTGTTG+AGG | + | Chr5:2578854-2578873 | MsG0580024253.01.T01:intron | 30.0% |
| AAAAAGTTGGGCTATTTGCA+GGG | - | Chr5:2580036-2580055 | None:intergenic | 35.0% | |
| AACACTTTGTAATGCATGTG+GGG | + | Chr5:2579667-2579686 | MsG0580024253.01.T01:CDS | 35.0% | |
| AACAGCATTACACTCTTAAG+TGG | + | Chr5:2579426-2579445 | MsG0580024253.01.T01:CDS | 35.0% | |
| AAGCAGAAGAGAATGAGAAT+GGG | + | Chr5:2580103-2580122 | MsG0580024253.01.T01:CDS | 35.0% | |
| CGAAATATCTGGTTGAATAC+AGG | - | Chr5:2579340-2579359 | None:intergenic | 35.0% | |
| GCCAATACATTGATGCAAAA+AGG | - | Chr5:2579000-2579019 | None:intergenic | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | - | Chr5:2579774-2579793 | None:intergenic | 35.0% | |
| TCATCAAATGTTTCAACAGC+TGG | - | Chr5:2579312-2579331 | None:intergenic | 35.0% | |
| TGGAGTTTCTTATCTGACAT+AGG | + | Chr5:2578689-2578708 | MsG0580024253.01.T01:CDS | 35.0% | |
| TGTCAGATAAGAAACTCCAT+AGG | - | Chr5:2578688-2578707 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | - | Chr5:2579775-2579794 | None:intergenic | 35.0% | |
| ! | ACAGGAAAGTAGTGGAAATA+AGG | + | Chr5:2579774-2579793 | MsG0580024253.01.T01:intron | 35.0% |
| ! | ACTTAAGAGTGTAATGCTGT+TGG | - | Chr5:2579427-2579446 | None:intergenic | 35.0% |
| ! | TCTTTGGATGCTTTGTTACT+CGG | - | Chr5:2579860-2579879 | None:intergenic | 35.0% |
| !!! | ACAAAGTGTTTTTGGACCAT+CGG | - | Chr5:2579963-2579982 | None:intergenic | 35.0% |
| AAAAAGTTGGGCTCTTTGCA+GGG | - | Chr5:2579730-2579749 | None:intergenic | 40.0% | |
| ACCTTTCCAAAATGCTTGGA+AGG | + | Chr5:2578794-2578813 | MsG0580024253.01.T01:intron | 40.0% | |
| AGCATTTCCTTCATTTGACC+TGG | + | Chr5:2578739-2578758 | MsG0580024253.01.T01:CDS | 40.0% | |
| AGCTGGAAATGCATCTTTGT+TGG | - | Chr5:2579295-2579314 | None:intergenic | 40.0% | |
| ATGATGACATTTCCTCCCAA+TGG | - | Chr5:2579903-2579922 | None:intergenic | 40.0% | |
| ATGTGCATTCTAATTCCCAC+AGG | + | Chr5:2579756-2579775 | MsG0580024253.01.T01:intron | 40.0% | |
| CAAAAAGTTGGGCTATTTGC+AGG | - | Chr5:2580037-2580056 | None:intergenic | 40.0% | |
| CGAAACAAACCTCAACCATT+GGG | + | Chr5:2579580-2579599 | MsG0580024253.01.T01:CDS | 40.0% | |
| GAAGCAGAAGAGAATGAGAA+TGG | + | Chr5:2580102-2580121 | MsG0580024253.01.T01:CDS | 40.0% | |
| GAGCTGATAATACTCCTCTA+TGG | + | Chr5:2579622-2579641 | MsG0580024253.01.T01:CDS | 40.0% | |
| GCACATTGCTGCAAAAAGTT+GGG | - | Chr5:2579742-2579761 | None:intergenic | 40.0% | |
| GTATCATCCAGGTCAAATGA+AGG | - | Chr5:2578749-2578768 | None:intergenic | 40.0% | |
| GTATTCACACTGAAAACTCC+TGG | - | Chr5:2579195-2579214 | None:intergenic | 40.0% | |
| TAATTCCCACAGGAAAGTAG+TGG | + | Chr5:2579766-2579785 | MsG0580024253.01.T01:intron | 40.0% | |
| TCCTGGAACATGAAAACAAG+CGG | - | Chr5:2579178-2579197 | None:intergenic | 40.0% | |
| TGCACATTGCTGCAAAAAGT+TGG | - | Chr5:2579743-2579762 | None:intergenic | 40.0% | |
| TTGATTCTGTGGATGACCTA+TGG | + | Chr5:2578669-2578688 | MsG0580024253.01.T01:CDS | 40.0% | |
| TTGCAGTAGAGGATCTTGAA+TGG | + | Chr5:2579265-2579284 | MsG0580024253.01.T01:CDS | 40.0% | |
| TTTCTTATCTGACATAGGCG+AGG | + | Chr5:2578694-2578713 | MsG0580024253.01.T01:CDS | 40.0% | |
| TTTGTAATGCATGTGGGGTT+AGG | + | Chr5:2579672-2579691 | MsG0580024253.01.T01:intron | 40.0% | |
| ! | ATGAATGGTTGGTATCATCC+AGG | - | Chr5:2578760-2578779 | None:intergenic | 40.0% |
| ! | CTTGTGCTGTTCTCAACAAT+TGG | - | Chr5:2579381-2579400 | None:intergenic | 40.0% |
| ! | GGTTTGCTTCGATTGTTCTT+TGG | - | Chr5:2579876-2579895 | None:intergenic | 40.0% |
| !!! | CAAAGTGTTTTTGGACCATC+GGG | - | Chr5:2579962-2579981 | None:intergenic | 40.0% |
| !!! | GTTTTAAGGTTTCCGTGTTG+TGG | + | Chr5:2579095-2579114 | MsG0580024253.01.T01:intron | 40.0% |
| AACAAACCTCAACCATTGGG+AGG | + | Chr5:2579583-2579602 | MsG0580024253.01.T01:CDS | 45.0% | |
| ACATTTCCTCCCAATGGTTG+AGG | - | Chr5:2579897-2579916 | None:intergenic | 45.0% | |
| ATAGATGTGGCTCCACAACA+CGG | - | Chr5:2579110-2579129 | None:intergenic | 45.0% | |
| ATGATGACATTGCCTCCCAA+TGG | - | Chr5:2579598-2579617 | None:intergenic | 45.0% | |
| ATGCATGTGGGGTTAGGTAT+AGG | + | Chr5:2579678-2579697 | MsG0580024253.01.T01:intron | 45.0% | |
| CAAAAAGTTGGGCTCTTTGC+AGG | - | Chr5:2579731-2579750 | None:intergenic | 45.0% | |
| CGAAGCAAACCTCAACCATT+GGG | + | Chr5:2579885-2579904 | MsG0580024253.01.T01:CDS | 45.0% | |
| GAGCTGATAATACTCCGCAA+TGG | + | Chr5:2579927-2579946 | MsG0580024253.01.T01:CDS | 45.0% | |
| GCAAAGAGAGAATCTGTCGT+TGG | - | Chr5:2579050-2579069 | None:intergenic | 45.0% | |
| GCGAAACAAACCTCAACCAT+TGG | + | Chr5:2579579-2579598 | MsG0580024253.01.T01:CDS | 45.0% | |
| GGGAGGAAATGTCATCATTG+TGG | + | Chr5:2579905-2579924 | MsG0580024253.01.T01:CDS | 45.0% | |
| TAATGCCCACAGGAAAGTAG+TGG | + | Chr5:2580072-2580091 | MsG0580024253.01.T01:CDS | 45.0% | |
| TCCAGGTATCAGAAATGCCA+AGG | - | Chr5:2579509-2579528 | None:intergenic | 45.0% | |
| TCCATGTGTCAGAAATGCCA+AGG | - | Chr5:2579814-2579833 | None:intergenic | 45.0% | |
| TCGAAGCAAACCTCAACCAT+TGG | + | Chr5:2579884-2579903 | MsG0580024253.01.T01:CDS | 45.0% | |
| TTTGTAATGCATGTGGGGTC+AGG | + | Chr5:2579978-2579997 | MsG0580024253.01.T01:CDS | 45.0% | |
| ! | GCTGTTTCCACGTGAATTGA+CGG | - | Chr5:2579838-2579857 | None:intergenic | 45.0% |
| ! | GTTGTTTCCACGCGAATTGA+TGG | - | Chr5:2579533-2579552 | None:intergenic | 45.0% |
| !! | ACAAAGTGTTTTGGACCAGC+AGG | - | Chr5:2579657-2579676 | None:intergenic | 45.0% |
| !! | GCCTTCCAAGCATTTTGGAA+AGG | - | Chr5:2578798-2578817 | None:intergenic | 45.0% |
| !! | TCTGAGATTTTCAGTGCCTG+CGG | + | Chr5:2579022-2579041 | MsG0580024253.01.T01:intron | 45.0% |
| !! | TGCGCTTGTTTTCATGTTCC+AGG | + | Chr5:2579239-2579258 | MsG0580024253.01.T01:intron | 45.0% |
| AAGTTGGGCTATTTGCAGGG+CGG | - | Chr5:2580033-2580052 | None:intergenic | 50.0% | |
| AATACTCCTCTATGGCGTGC+AGG | + | Chr5:2579630-2579649 | MsG0580024253.01.T01:CDS | 50.0% | |
| ACATTGCCTCCCAATGGTTG+AGG | - | Chr5:2579592-2579611 | None:intergenic | 50.0% | |
| ACGTGCATTCTAATGCCCAC+AGG | + | Chr5:2580062-2580081 | MsG0580024253.01.T01:CDS | 50.0% | |
| AGCAAACCTCAACCATTGGG+AGG | + | Chr5:2579888-2579907 | MsG0580024253.01.T01:CDS | 50.0% | |
| ATGCATGTGGGGTCAGGTAT+AGG | + | Chr5:2579984-2580003 | MsG0580024253.01.T01:CDS | 50.0% | |
| ATTCGTAGTAAGCCTCGCCT+TGG | + | Chr5:2579794-2579813 | MsG0580024253.01.T01:CDS | 50.0% | |
| CATGGAACCGTCAATTCACG+TGG | + | Chr5:2579828-2579847 | MsG0580024253.01.T01:CDS | 50.0% | |
| CTATTTGCAGGGCGGTATTC+AGG | - | Chr5:2580025-2580044 | None:intergenic | 50.0% | |
| GATCCTCTACTGCAAACTCC+TGG | - | Chr5:2579260-2579279 | None:intergenic | 50.0% | |
| GATGGAGGCTCTTGATTCTG+TGG | + | Chr5:2578658-2578677 | MsG0580024253.01.T01:CDS | 50.0% | |
| GCACGTCGCTGCAAAAAGTT+GGG | - | Chr5:2580048-2580067 | None:intergenic | 50.0% | |
| GCCTTGGCATTTCTGACACA+TGG | + | Chr5:2579810-2579829 | MsG0580024253.01.T01:CDS | 50.0% | |
| GCCTTGGCATTTCTGATACC+TGG | + | Chr5:2579505-2579524 | MsG0580024253.01.T01:CDS | 50.0% | |
| GGCGGTATTCAGGTACAAGT+CGG | - | Chr5:2579709-2579728 | None:intergenic | 50.0% | |
| GGGAGGCAATGTCATCATTG+TGG | + | Chr5:2579600-2579619 | MsG0580024253.01.T01:CDS | 50.0% | |
| GTATCAGAAATGCCAAGGCG+AGG | - | Chr5:2579504-2579523 | None:intergenic | 50.0% | |
| GTTCCAGGAGTTTGCAGTAG+AGG | + | Chr5:2579254-2579273 | MsG0580024253.01.T01:intron | 50.0% | |
| TGCACGTCGCTGCAAAAAGT+TGG | - | Chr5:2580049-2580068 | None:intergenic | 50.0% | |
| TGTGGGGTTAGGTATAGGTC+TGG | + | Chr5:2579683-2579702 | MsG0580024253.01.T01:intron | 50.0% | |
| ! | TCACGGCCTTCCAAGCATTT+TGG | - | Chr5:2578803-2578822 | None:intergenic | 50.0% |
| !! | GCCGCTTGTTTTCATGTTCC+AGG | + | Chr5:2579174-2579193 | MsG0580024253.01.T01:intron | 50.0% |
| AAGTTGGGCTCTTTGCAGGG+CGG | - | Chr5:2579727-2579746 | None:intergenic | 55.0% | |
| AATACTCCGCAATGGCGTGC+AGG | + | Chr5:2579935-2579954 | MsG0580024253.01.T01:CDS | 55.0% | |
| CCTGGAACCATCAATTCGCG+TGG | + | Chr5:2579523-2579542 | MsG0580024253.01.T01:CDS | 55.0% | |
| CTCTTTGCAGGGCGGTATTC+AGG | - | Chr5:2579719-2579738 | None:intergenic | 55.0% | |
| GTGTCAGAAATGCCAAGGCG+AGG | - | Chr5:2579809-2579828 | None:intergenic | 55.0% | |
| TGAAGTTCCCTGTCCGTGCA+CGG | + | Chr5:2579460-2579479 | MsG0580024253.01.T01:CDS | 55.0% | |
| TGTGGGGTCAGGTATAGGTC+TGG | + | Chr5:2579989-2580008 | MsG0580024253.01.T01:CDS | 55.0% | |
| ! | CCACGCGAATTGATGGTTCC+AGG | - | Chr5:2579526-2579545 | None:intergenic | 55.0% |
| ACTTGCTCCGTGCACGGACA+GGG | - | Chr5:2579470-2579489 | None:intergenic | 60.0% | |
| GAATCTGTCGTTGGCACCGC+AGG | - | Chr5:2579041-2579060 | None:intergenic | 60.0% | |
| TCTCGCAGTAAGCCTCGCCT+TGG | + | Chr5:2579489-2579508 | MsG0580024253.01.T01:CDS | 60.0% | |
| ! | TGCGAGACTTGCTCCGTGCA+CGG | - | Chr5:2579476-2579495 | None:intergenic | 60.0% |
| CAATGGCGTGCAGGTCCCGA+TGG | + | Chr5:2579944-2579963 | MsG0580024253.01.T01:CDS | 65.0% | |
| CTATGGCGTGCAGGTCCTGC+TGG | + | Chr5:2579639-2579658 | MsG0580024253.01.T01:CDS | 65.0% | |
| GCAGGACCTGCACGCCATAG+AGG | - | Chr5:2579639-2579658 | None:intergenic | 65.0% | |
| TCGGGACCTGCACGCCATTG+CGG | - | Chr5:2579944-2579963 | None:intergenic | 65.0% | |
| ! | GACTTGCTCCGTGCACGGAC+AGG | - | Chr5:2579471-2579490 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 2578647 | 2580129 | 2578647 | ID=MsG0580024253.01;Name=MsG0580024253.01 |
| Chr5 | mRNA | 2578647 | 2580129 | 2578647 | ID=MsG0580024253.01.T01;Parent=MsG0580024253.01;Name=MsG0580024253.01.T01;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|305 |
| Chr5 | exon | 2578647 | 2578784 | 2578647 | ID=MsG0580024253.01.T01:exon:866;Parent=MsG0580024253.01.T01 |
| Chr5 | exon | 2579261 | 2579688 | 2579261 | ID=MsG0580024253.01.T01:exon:867;Parent=MsG0580024253.01.T01 |
| Chr5 | exon | 2579778 | 2580129 | 2579778 | ID=MsG0580024253.01.T01:exon:868;Parent=MsG0580024253.01.T01 |
| Chr5 | CDS | 2578647 | 2578784 | 2578647 | ID=MsG0580024253.01.T01:cds;Parent=MsG0580024253.01.T01 |
| Chr5 | CDS | 2579261 | 2579688 | 2579261 | ID=MsG0580024253.01.T01:cds;Parent=MsG0580024253.01.T01 |
| Chr5 | CDS | 2579778 | 2580129 | 2579778 | ID=MsG0580024253.01.T01:cds;Parent=MsG0580024253.01.T01 |
| Gene Sequence |
| Protein sequence |
