Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024545.01.T01 | XP_003611347.1 | 98.311 | 296 | 5 | 0 | 1 | 296 | 1 | 296 | 0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024545.01.T01 | Q05466 | 65.101 | 298 | 88 | 7 | 1 | 296 | 1 | 284 | 5.52E-108 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024545.01.T01 | B7FJ62 | 98.311 | 296 | 5 | 0 | 1 | 296 | 1 | 296 | 0.0 | 598 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580024545.01.T01 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024545.01.T01 | MTR_5g013010 | 98.311 | 296 | 5 | 0 | 1 | 296 | 1 | 296 | 0.0 | 598 |
| MsG0580024545.01.T01 | MTR_4g100550 | 72.333 | 300 | 54 | 9 | 1 | 293 | 2 | 279 | 3.39e-138 | 392 |
| MsG0580024545.01.T01 | MTR_5g013010 | 98.930 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 3.96e-134 | 379 |
| MsG0580024545.01.T01 | MTR_8g006705 | 56.958 | 309 | 101 | 10 | 4 | 288 | 3 | 303 | 3.95e-94 | 281 |
| MsG0580024545.01.T01 | MTR_7g093430 | 64.516 | 186 | 58 | 4 | 72 | 250 | 89 | 273 | 1.26e-67 | 213 |
| MsG0580024545.01.T01 | MTR_1g054285 | 60.204 | 196 | 54 | 4 | 71 | 251 | 82 | 268 | 1.49e-66 | 210 |
| MsG0580024545.01.T01 | MTR_2g061030 | 73.026 | 152 | 35 | 4 | 112 | 260 | 175 | 323 | 1.53e-65 | 209 |
| MsG0580024545.01.T01 | MTR_4g097600 | 78.049 | 123 | 26 | 1 | 127 | 249 | 118 | 239 | 7.38e-61 | 194 |
| MsG0580024545.01.T01 | MTR_5g014890 | 65.972 | 144 | 46 | 2 | 127 | 268 | 114 | 256 | 5.88e-60 | 192 |
| MsG0580024545.01.T01 | MTR_1g017090 | 51.667 | 180 | 73 | 5 | 96 | 263 | 88 | 265 | 1.56e-51 | 171 |
| MsG0580024545.01.T01 | MTR_4g084750 | 62.097 | 124 | 42 | 1 | 130 | 248 | 59 | 182 | 2.55e-45 | 152 |
| MsG0580024545.01.T01 | MTR_2g038625 | 57.627 | 118 | 50 | 0 | 136 | 253 | 82 | 199 | 4.04e-41 | 142 |
| MsG0580024545.01.T01 | MTR_2g038580 | 57.627 | 118 | 50 | 0 | 136 | 253 | 82 | 199 | 4.04e-41 | 142 |
| MsG0580024545.01.T01 | MTR_3g103590 | 65.217 | 115 | 38 | 2 | 135 | 249 | 144 | 256 | 6.07e-39 | 139 |
| MsG0580024545.01.T01 | MTR_4g126900 | 61.404 | 114 | 41 | 1 | 138 | 248 | 90 | 203 | 1.57e-38 | 135 |
| MsG0580024545.01.T01 | MTR_7g010020 | 42.537 | 134 | 63 | 3 | 97 | 225 | 49 | 173 | 3.34e-20 | 88.2 |
| MsG0580024545.01.T01 | MTR_5g038280 | 39.535 | 172 | 77 | 6 | 78 | 228 | 20 | 185 | 2.09e-19 | 87.0 |
| MsG0580024545.01.T01 | MTR_8g468210 | 41.463 | 123 | 70 | 2 | 100 | 222 | 43 | 163 | 7.79e-19 | 84.7 |
| MsG0580024545.01.T01 | MTR_6g007647 | 43.590 | 117 | 65 | 1 | 136 | 252 | 33 | 148 | 1.03e-18 | 84.0 |
| MsG0580024545.01.T01 | MTR_6g007647 | 43.590 | 117 | 65 | 1 | 136 | 252 | 67 | 182 | 2.05e-18 | 83.6 |
| MsG0580024545.01.T01 | MTR_4g107650 | 52.632 | 95 | 38 | 1 | 134 | 221 | 93 | 187 | 6.37e-18 | 83.2 |
| MsG0580024545.01.T01 | MTR_6g011610 | 31.401 | 207 | 106 | 5 | 18 | 223 | 12 | 183 | 7.10e-18 | 82.0 |
| MsG0580024545.01.T01 | MTR_5g039000 | 39.516 | 124 | 75 | 0 | 100 | 223 | 41 | 164 | 1.47e-17 | 81.3 |
| MsG0580024545.01.T01 | MTR_6g011610 | 46.000 | 100 | 53 | 1 | 125 | 223 | 65 | 164 | 2.47e-17 | 80.1 |
| MsG0580024545.01.T01 | MTR_1g061660 | 47.191 | 89 | 47 | 0 | 136 | 224 | 59 | 147 | 4.13e-17 | 79.0 |
| MsG0580024545.01.T01 | MTR_3g080100 | 38.926 | 149 | 65 | 4 | 97 | 223 | 9 | 153 | 4.38e-17 | 79.3 |
| MsG0580024545.01.T01 | MTR_3g080100 | 48.421 | 95 | 42 | 1 | 136 | 223 | 20 | 114 | 4.70e-17 | 78.6 |
| MsG0580024545.01.T01 | MTR_7g103340 | 45.455 | 88 | 48 | 0 | 136 | 223 | 63 | 150 | 1.23e-16 | 77.8 |
| MsG0580024545.01.T01 | MTR_3g086790 | 40.625 | 128 | 68 | 2 | 128 | 247 | 52 | 179 | 2.86e-16 | 77.8 |
| MsG0580024545.01.T01 | MTR_8g089895 | 47.475 | 99 | 45 | 1 | 132 | 223 | 50 | 148 | 3.08e-16 | 77.8 |
| MsG0580024545.01.T01 | MTR_8g469430 | 46.809 | 94 | 43 | 1 | 136 | 222 | 89 | 182 | 1.55e-15 | 75.5 |
| MsG0580024545.01.T01 | MTR_8g026960 | 42.683 | 82 | 47 | 0 | 140 | 221 | 38 | 119 | 1.29e-11 | 63.5 |
| MsG0580024545.01.T01 | MTR_5g029320 | 31.690 | 142 | 91 | 1 | 80 | 221 | 42 | 177 | 2.98e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024545.01.T01 | AT4G16780 | 65.101 | 298 | 88 | 7 | 1 | 296 | 1 | 284 | 5.63e-109 | 318 |
| MsG0580024545.01.T01 | AT5G47370 | 59.936 | 312 | 80 | 13 | 1 | 296 | 1 | 283 | 7.82e-107 | 312 |
| MsG0580024545.01.T01 | AT4G17460 | 59.032 | 310 | 85 | 11 | 1 | 296 | 1 | 282 | 2.93e-105 | 308 |
| MsG0580024545.01.T01 | AT3G60390 | 59.060 | 298 | 84 | 14 | 17 | 287 | 23 | 309 | 1.33e-91 | 275 |
| MsG0580024545.01.T01 | AT2G44910 | 53.165 | 316 | 115 | 12 | 4 | 288 | 3 | 316 | 3.19e-84 | 256 |
| MsG0580024545.01.T01 | AT5G06710 | 61.421 | 197 | 64 | 6 | 91 | 277 | 135 | 329 | 2.91e-67 | 213 |
| MsG0580024545.01.T01 | AT4G37790 | 59.358 | 187 | 57 | 5 | 105 | 273 | 86 | 271 | 3.56e-62 | 198 |
| MsG0580024545.01.T01 | AT2G22800 | 72.308 | 130 | 32 | 2 | 123 | 249 | 97 | 225 | 2.69e-58 | 188 |
| MsG0580024545.01.T01 | AT2G01430 | 52.299 | 174 | 65 | 4 | 92 | 256 | 95 | 259 | 5.50e-44 | 151 |
| MsG0580024545.01.T01 | AT1G70920 | 60.976 | 123 | 37 | 2 | 135 | 257 | 68 | 179 | 8.84e-38 | 133 |
| MsG0580024545.01.T01 | AT1G70920 | 60.976 | 123 | 37 | 2 | 135 | 257 | 38 | 149 | 9.09e-38 | 132 |
| MsG0580024545.01.T01 | AT5G06710 | 58.879 | 107 | 34 | 4 | 91 | 187 | 135 | 241 | 4.60e-27 | 107 |
| MsG0580024545.01.T01 | AT1G69780 | 41.221 | 131 | 67 | 2 | 98 | 223 | 47 | 172 | 4.93e-20 | 88.2 |
| MsG0580024545.01.T01 | AT2G01430 | 47.059 | 119 | 49 | 3 | 92 | 204 | 95 | 205 | 5.81e-19 | 84.0 |
| MsG0580024545.01.T01 | AT1G26960 | 46.341 | 123 | 61 | 4 | 103 | 223 | 39 | 158 | 1.78e-18 | 83.2 |
| MsG0580024545.01.T01 | AT3G01470 | 48.387 | 93 | 41 | 1 | 136 | 221 | 68 | 160 | 6.15e-17 | 79.3 |
| MsG0580024545.01.T01 | AT5G03790 | 37.313 | 134 | 83 | 1 | 136 | 269 | 77 | 209 | 4.43e-16 | 76.3 |
| MsG0580024545.01.T01 | AT5G15150 | 38.983 | 118 | 65 | 1 | 106 | 223 | 92 | 202 | 2.64e-15 | 75.5 |
| MsG0580024545.01.T01 | AT1G27045 | 47.748 | 111 | 45 | 3 | 127 | 224 | 53 | 163 | 3.64e-15 | 73.9 |
| MsG0580024545.01.T01 | AT3G01220 | 45.745 | 94 | 47 | 1 | 136 | 225 | 87 | 180 | 4.97e-15 | 74.3 |
| MsG0580024545.01.T01 | AT1G27045 | 54.321 | 81 | 31 | 1 | 127 | 201 | 53 | 133 | 9.35e-15 | 72.4 |
| MsG0580024545.01.T01 | AT1G27045 | 59.091 | 66 | 27 | 0 | 136 | 201 | 17 | 82 | 1.03e-14 | 71.2 |
| MsG0580024545.01.T01 | AT1G27045 | 59.091 | 66 | 27 | 0 | 136 | 201 | 25 | 90 | 1.08e-14 | 71.2 |
| MsG0580024545.01.T01 | AT1G27045 | 59.091 | 66 | 27 | 0 | 136 | 201 | 25 | 90 | 1.08e-14 | 71.2 |
| MsG0580024545.01.T01 | AT5G65310 | 35.417 | 144 | 84 | 3 | 133 | 269 | 69 | 210 | 1.87e-14 | 72.8 |
| MsG0580024545.01.T01 | AT4G40060 | 44.330 | 97 | 47 | 1 | 134 | 223 | 57 | 153 | 1.96e-14 | 72.8 |
| MsG0580024545.01.T01 | AT5G65310 | 35.417 | 144 | 84 | 3 | 133 | 269 | 51 | 192 | 2.40e-14 | 72.4 |
| MsG0580024545.01.T01 | AT2G22430 | 44.792 | 96 | 49 | 1 | 134 | 225 | 60 | 155 | 4.51e-14 | 71.6 |
| MsG0580024545.01.T01 | AT5G03790 | 43.956 | 91 | 51 | 0 | 136 | 226 | 77 | 167 | 3.94e-13 | 67.4 |
| MsG0580024545.01.T01 | AT2G46680 | 41.053 | 95 | 52 | 1 | 139 | 229 | 35 | 129 | 4.86e-13 | 68.2 |
| MsG0580024545.01.T01 | AT2G46680 | 40.909 | 88 | 52 | 0 | 139 | 226 | 35 | 122 | 5.39e-13 | 67.8 |
| MsG0580024545.01.T01 | AT2G36610 | 39.796 | 98 | 51 | 1 | 135 | 224 | 70 | 167 | 1.14e-12 | 65.9 |
| MsG0580024545.01.T01 | AT4G36740 | 43.678 | 87 | 49 | 0 | 136 | 222 | 55 | 141 | 6.27e-12 | 64.3 |
| MsG0580024545.01.T01 | AT4G36740 | 43.678 | 87 | 49 | 0 | 136 | 222 | 56 | 142 | 6.42e-12 | 64.3 |
| MsG0580024545.01.T01 | AT5G53980 | 42.391 | 92 | 53 | 0 | 131 | 222 | 6 | 97 | 4.46e-11 | 60.5 |
| MsG0580024545.01.T01 | AT2G18550 | 43.678 | 87 | 49 | 0 | 136 | 222 | 61 | 147 | 6.09e-11 | 61.6 |
Find 77 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAAGTCAAATTTATATTT+TGG | 0.135798 | 5:+6244027 | MsG0580024545.01.T01:three_prime_UTR |
| AGTATTGAAAAGGAAGATTT+TGG | 0.211828 | 5:+6242211 | MsG0580024545.01.T01:CDS |
| ATTGCTTTAGGATTGGAATT+TGG | 0.216882 | 5:+6244054 | MsG0580024545.01.T01:three_prime_UTR |
| TTGACCCCATTGTCTTCTTT+TGG | 0.246088 | 5:+6243866 | MsG0580024545.01.T01:three_prime_UTR |
| TAGAATAATTGATTGGTCTT+TGG | 0.254387 | 5:-6242845 | None:intergenic |
| AGATTAAGGTATTGAGGATT+TGG | 0.288551 | 5:-6242268 | None:intergenic |
| CGTATCTTCAAAGTCATAAA+AGG | 0.294812 | 5:-6244113 | None:intergenic |
| ATGAAACAAATGAAACAAAA+TGG | 0.303398 | 5:+6243740 | MsG0580024545.01.T01:three_prime_UTR |
| GGAAATGGACGTGGGTGATT+TGG | 0.317565 | 5:-6243617 | None:intergenic |
| TGCTTTGAACACAAAATTCA+TGG | 0.325878 | 5:-6243776 | None:intergenic |
| TTGAAGAAGACATAAGATTA+AGG | 0.336048 | 5:-6242282 | None:intergenic |
| ATTGGCACTTGCAAAACAAT+TGG | 0.337338 | 5:+6242999 | MsG0580024545.01.T01:CDS |
| GCCCATGGTCCCACAGGAAA+TGG | 0.346020 | 5:-6243632 | None:intergenic |
| TCAAAGCACTGTTTAAGATA+TGG | 0.381394 | 5:+6243791 | MsG0580024545.01.T01:three_prime_UTR |
| TTTGAGGGAAGCTCAAACTT+AGG | 0.385146 | 5:-6242240 | None:intergenic |
| GTGCTAGACAAGTTGAAGTT+TGG | 0.390504 | 5:+6243028 | MsG0580024545.01.T01:CDS |
| GATTGGAATTTGGAAATGTA+TGG | 0.393903 | 5:+6244064 | MsG0580024545.01.T01:three_prime_UTR |
| AAGAAGACGCTGAAACTTCA+AGG | 0.402562 | 5:+6242806 | MsG0580024545.01.T01:CDS |
| CTAAACCAAAAGAAGACAAT+GGG | 0.420191 | 5:-6243871 | None:intergenic |
| GACATAAGATTAAGGTATTG+AGG | 0.421167 | 5:-6242274 | None:intergenic |
| TCTCTTCTAGAATAATTGAT+TGG | 0.421188 | 5:-6242852 | None:intergenic |
| GATGTGAATCGGTTACCTTC+TGG | 0.421492 | 5:+6242646 | MsG0580024545.01.T01:CDS |
| TTTACATGCAGATCGGGATT+CGG | 0.433835 | 5:+6242579 | MsG0580024545.01.T01:intron |
| ACACTTGAAACGGTGCTGTT+TGG | 0.443597 | 5:-6242703 | None:intergenic |
| TTGGCACTTGCAAAACAATT+GGG | 0.452760 | 5:+6243000 | MsG0580024545.01.T01:CDS |
| TGGCTTAATTGCTTTAGGAT+TGG | 0.454242 | 5:+6244047 | MsG0580024545.01.T01:three_prime_UTR |
| GGGCACATGGTAAGAGTTGT+TGG | 0.457834 | 5:-6243527 | None:intergenic |
| GTCCATTTCCTGTGGGACCA+TGG | 0.458770 | 5:+6243630 | MsG0580024545.01.T01:CDS |
| TGAAAATAGACGGTTACAAA+AGG | 0.474850 | 5:+6243445 | MsG0580024545.01.T01:CDS |
| TTTACCACTCACACTTGAAA+CGG | 0.484021 | 5:-6242713 | None:intergenic |
| TCCATTTCCTGTGGGACCAT+GGG | 0.490692 | 5:+6243631 | MsG0580024545.01.T01:CDS |
| TTAAGGTATTGAGGATTTGG+TGG | 0.491711 | 5:-6242265 | None:intergenic |
| AGAAGCGAAAGAGAAGTTAC+AGG | 0.494456 | 5:+6242736 | MsG0580024545.01.T01:CDS |
| GCAGCATCAACGGCAGATGA+TGG | 0.502736 | 5:-6243572 | None:intergenic |
| ATTGAAAGTAGAAGGAGAAG+AGG | 0.503918 | 5:-6242311 | None:intergenic |
| ATCCGTACAAGTTAAGATCT+AGG | 0.515404 | 5:-6243698 | None:intergenic |
| TCATTTGCATGTAGAATTGT+GGG | 0.520585 | 5:-6243499 | None:intergenic |
| GTCATTTGCATGTAGAATTG+TGG | 0.521859 | 5:-6243500 | None:intergenic |
| TCGATTCCTCGGAGAAGTAA+AGG | 0.525636 | 5:-6242625 | None:intergenic |
| TCCGAGGAATCGATGTGAAT+CGG | 0.527394 | 5:+6242635 | MsG0580024545.01.T01:CDS |
| GTCCTAGATCTTAACTTGTA+CGG | 0.534286 | 5:+6243696 | MsG0580024545.01.T01:exon |
| GCTGTGGCCCATGGTCCCAC+AGG | 0.538822 | 5:-6243638 | None:intergenic |
| TCAAAGGTCCTATGTTGGAT+AGG | 0.542840 | 5:-6243665 | None:intergenic |
| ACGACGCGTGGCAGCATCAA+CGG | 0.548952 | 5:-6243582 | None:intergenic |
| ATGGAAAGAGATTGTTCAAG+AGG | 0.550270 | 5:+6242772 | MsG0580024545.01.T01:CDS |
| TGCCACGCGTCGTCATCCTA+TGG | 0.554799 | 5:+6243592 | MsG0580024545.01.T01:CDS |
| ACCGATTCACATCGATTCCT+CGG | 0.556594 | 5:-6242636 | None:intergenic |
| CGTGGGTGATTTGGAGCCAT+AGG | 0.560215 | 5:-6243608 | None:intergenic |
| CACATGGTAAGAGTTGTTGG+TGG | 0.564954 | 5:-6243524 | None:intergenic |
| ATAGGAGCAGCTGTGGCCCA+TGG | 0.566808 | 5:-6243647 | None:intergenic |
| GGTCCCACAGGAAATGGACG+TGG | 0.582860 | 5:-6243626 | None:intergenic |
| GGTTTCAAAATCGTAGAGCA+AGG | 0.583437 | 5:+6243049 | MsG0580024545.01.T01:CDS |
| ACAGCAACACGCTCACAAGA+GGG | 0.586849 | 5:-6243548 | None:intergenic |
| ATGTTGGATAGGAGCAGCTG+TGG | 0.588541 | 5:-6243654 | None:intergenic |
| CAGCTGCTCCTATCCAACAT+AGG | 0.588914 | 5:+6243657 | MsG0580024545.01.T01:CDS |
| ACTAAACCAAAAGAAGACAA+TGG | 0.591131 | 5:-6243872 | None:intergenic |
| GTGTATCAAAGGTCCTATGT+TGG | 0.591308 | 5:-6243670 | None:intergenic |
| CACCCACGTCCATTTCCTGT+GGG | 0.600865 | 5:+6243623 | MsG0580024545.01.T01:CDS |
| AACAGCAACACGCTCACAAG+AGG | 0.612400 | 5:-6243549 | None:intergenic |
| ATCTAACGGATGAAAATAGA+CGG | 0.614300 | 5:+6243435 | MsG0580024545.01.T01:CDS |
| TCACCCACGTCCATTTCCTG+TGG | 0.615645 | 5:+6243622 | MsG0580024545.01.T01:CDS |
| TCTAGGACGGAGTGTATCAA+AGG | 0.615968 | 5:-6243681 | None:intergenic |
| TTTCTTGTATTACAAGAACA+AGG | 0.618850 | 5:+6242174 | MsG0580024545.01.T01:five_prime_UTR |
| TCTTCACAATCAGCACCAGA+AGG | 0.621185 | 5:-6242661 | None:intergenic |
| ACGCTCACAAGAGGGGCACA+TGG | 0.624285 | 5:-6243540 | None:intergenic |
| GCTGATTGTGAAGAAGAAGC+AGG | 0.645646 | 5:+6242670 | MsG0580024545.01.T01:CDS |
| GTACAAGTTAAGATCTAGGA+CGG | 0.655097 | 5:-6243694 | None:intergenic |
| AGCCATAGGATGACGACGCG+TGG | 0.657092 | 5:-6243594 | None:intergenic |
| TACAGGTGAAGATCTTGACA+TGG | 0.657130 | 5:+6242753 | MsG0580024545.01.T01:CDS |
| CAGCAACACGCTCACAAGAG+GGG | 0.670133 | 5:-6243547 | None:intergenic |
| AGCACCGTTTCAAGTGTGAG+TGG | 0.674395 | 5:+6242709 | MsG0580024545.01.T01:CDS |
| AGACATGCAGAATCGAAGAA+CGG | 0.674956 | 5:+6242602 | MsG0580024545.01.T01:CDS |
| GAACGGCCTTTACTTCTCCG+AGG | 0.691005 | 5:+6242619 | MsG0580024545.01.T01:CDS |
| GTCCCACAGGAAATGGACGT+GGG | 0.703771 | 5:-6243625 | None:intergenic |
| CATTTGCATGTAGAATTGTG+GGG | 0.706166 | 5:-6243498 | None:intergenic |
| AAGATGTTGTGAGAATCTAA+CGG | 0.732801 | 5:+6243421 | MsG0580024545.01.T01:CDS |
| TAAACCAAAAGAAGACAATG+GGG | 0.742497 | 5:-6243870 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTATATTTTTTTTT+AGG | + | Chr5:6242934-6242953 | MsG0580024545.01.T01:intron | 0.0% |
| !! | CAATATTTATTTATTTATGT+TGG | + | Chr5:6243335-6243354 | MsG0580024545.01.T01:intron | 10.0% |
| !!! | TAAAAATCAATTTAAGTTAA+TGG | - | Chr5:6243270-6243289 | None:intergenic | 10.0% |
| !!! | TAAAAGTCAAATTTATATTT+TGG | + | Chr5:6244027-6244046 | MsG0580024545.01.T01:three_prime_UTR | 10.0% |
| !!! | TTATCAATATTTTTTTTTGA+AGG | + | Chr5:6243306-6243325 | MsG0580024545.01.T01:intron | 10.0% |
| !! | TTACACTTAATTAATACTTA+CGG | - | Chr5:6242905-6242924 | None:intergenic | 15.0% |
| !! | ATGAAACAAATGAAACAAAA+TGG | + | Chr5:6243740-6243759 | MsG0580024545.01.T01:three_prime_UTR | 20.0% |
| !! | TACACTTAATTAATACTTAC+GGG | - | Chr5:6242904-6242923 | None:intergenic | 20.0% |
| !! | TATTATTCCAAAGTTGTAAT+TGG | - | Chr5:6242407-6242426 | None:intergenic | 20.0% |
| !! | TTGTTTGTAGAAACAAAAAT+TGG | + | Chr5:6242981-6243000 | MsG0580024545.01.T01:intron | 20.0% |
| !!! | GAAAAAAATGAGTATTGAAA+AGG | + | Chr5:6242201-6242220 | MsG0580024545.01.T01:exon | 20.0% |
| !!! | TTTAAAACTCAAAAGATATC+CGG | + | Chr5:6243109-6243128 | MsG0580024545.01.T01:intron | 20.0% |
| ! | ACACTTAATTAATACTTACG+GGG | - | Chr5:6242903-6242922 | None:intergenic | 25.0% |
| ! | GTAAAGGAAGGAAATTATAT+AGG | - | Chr5:6242482-6242501 | None:intergenic | 25.0% |
| ! | TAAGATAGATTACAGAGTAA+AGG | - | Chr5:6242498-6242517 | None:intergenic | 25.0% |
| ! | TTGAAGAAGACATAAGATTA+AGG | - | Chr5:6242285-6242304 | None:intergenic | 25.0% |
| ! | TTTCTTGTATTACAAGAACA+AGG | + | Chr5:6242174-6242193 | MsG0580024545.01.T01:five_prime_UTR | 25.0% |
| !! | GTTAGAAGAAATGATTTTGT+GGG | + | Chr5:6243816-6243835 | MsG0580024545.01.T01:three_prime_UTR | 25.0% |
| !! | GTTTGTTAAATTGTGATTTC+AGG | + | Chr5:6243357-6243376 | MsG0580024545.01.T01:intron | 25.0% |
| !! | TGTTAGAAGAAATGATTTTG+TGG | + | Chr5:6243815-6243834 | MsG0580024545.01.T01:three_prime_UTR | 25.0% |
| !!! | AATGATGTTTTTACTTCTTC+AGG | + | Chr5:6242352-6242371 | MsG0580024545.01.T01:CDS | 25.0% |
| !!! | AGTATTGAAAAGGAAGATTT+TGG | + | Chr5:6242211-6242230 | MsG0580024545.01.T01:CDS | 25.0% |
| !!! | ATCTTATTTTACATGCAGAT+CGG | + | Chr5:6242572-6242591 | MsG0580024545.01.T01:intron | 25.0% |
| !!! | TAAAGTGCTTTGTTTTTTGA+AGG | - | Chr5:6242148-6242167 | None:intergenic | 25.0% |
| !!! | TAGAATAATTGATTGGTCTT+TGG | - | Chr5:6242848-6242867 | None:intergenic | 25.0% |
| !!! | TATTTTGGCTTAATTGCTTT+AGG | + | Chr5:6244042-6244061 | MsG0580024545.01.T01:three_prime_UTR | 25.0% |
| !!! | TCTCTTCTAGAATAATTGAT+TGG | - | Chr5:6242855-6242874 | None:intergenic | 25.0% |
| !!! | TTGACTAGTCTTTATTTAGT+TGG | + | Chr5:6243081-6243100 | MsG0580024545.01.T01:intron | 25.0% |
| AAGATGTTGTGAGAATCTAA+CGG | + | Chr5:6243421-6243440 | MsG0580024545.01.T01:CDS | 30.0% | |
| ACTAAACCAAAAGAAGACAA+TGG | - | Chr5:6243875-6243894 | None:intergenic | 30.0% | |
| ATAGATTACAGAGTAAAGGA+AGG | - | Chr5:6242494-6242513 | None:intergenic | 30.0% | |
| CTAAACCAAAAGAAGACAAT+GGG | - | Chr5:6243874-6243893 | None:intergenic | 30.0% | |
| GATTGGAATTTGGAAATGTA+TGG | + | Chr5:6244064-6244083 | MsG0580024545.01.T01:three_prime_UTR | 30.0% | |
| GTAAAAACATCATTCCAAGA+AGG | - | Chr5:6242346-6242365 | None:intergenic | 30.0% | |
| TAAACCAAAAGAAGACAATG+GGG | - | Chr5:6243873-6243892 | None:intergenic | 30.0% | |
| TCATTTGCATGTAGAATTGT+GGG | - | Chr5:6243502-6243521 | None:intergenic | 30.0% | |
| TGAAAATAGACGGTTACAAA+AGG | + | Chr5:6243445-6243464 | MsG0580024545.01.T01:CDS | 30.0% | |
| ! | ATCTAACGGATGAAAATAGA+CGG | + | Chr5:6243435-6243454 | MsG0580024545.01.T01:CDS | 30.0% |
| ! | TGCTTTGAACACAAAATTCA+TGG | - | Chr5:6243779-6243798 | None:intergenic | 30.0% |
| !! | AGATTAAGGTATTGAGGATT+TGG | - | Chr5:6242271-6242290 | None:intergenic | 30.0% |
| !! | ATTGCTTTAGGATTGGAATT+TGG | + | Chr5:6244054-6244073 | MsG0580024545.01.T01:three_prime_UTR | 30.0% |
| !! | GACATAAGATTAAGGTATTG+AGG | - | Chr5:6242277-6242296 | None:intergenic | 30.0% |
| !! | TCAAAGCACTGTTTAAGATA+TGG | + | Chr5:6243791-6243810 | MsG0580024545.01.T01:three_prime_UTR | 30.0% |
| !! | TTTTGAGGATTGAAAGTAGA+AGG | - | Chr5:6242322-6242341 | None:intergenic | 30.0% |
| !!! | TCTTATTTTACATGCAGATC+GGG | + | Chr5:6242573-6242592 | MsG0580024545.01.T01:intron | 30.0% |
| !!! | TTTGTTTTTTGAAGGAGGTT+GGG | - | Chr5:6242140-6242159 | None:intergenic | 30.0% |
| ATCCGTACAAGTTAAGATCT+AGG | - | Chr5:6243701-6243720 | None:intergenic | 35.0% | |
| ATCTGGTCCAATTACAACTT+TGG | + | Chr5:6242397-6242416 | MsG0580024545.01.T01:intron | 35.0% | |
| ATGGAAAGAGATTGTTCAAG+AGG | + | Chr5:6242772-6242791 | MsG0580024545.01.T01:CDS | 35.0% | |
| ATTGAAAGTAGAAGGAGAAG+AGG | - | Chr5:6242314-6242333 | None:intergenic | 35.0% | |
| ATTGGCACTTGCAAAACAAT+TGG | + | Chr5:6242999-6243018 | MsG0580024545.01.T01:CDS | 35.0% | |
| CATTTGCATGTAGAATTGTG+GGG | - | Chr5:6243501-6243520 | None:intergenic | 35.0% | |
| GTACAAGTTAAGATCTAGGA+CGG | - | Chr5:6243697-6243716 | None:intergenic | 35.0% | |
| GTCATTTGCATGTAGAATTG+TGG | - | Chr5:6243503-6243522 | None:intergenic | 35.0% | |
| TCAATCCTCAAAAACCTTCT+TGG | + | Chr5:6242329-6242348 | MsG0580024545.01.T01:CDS | 35.0% | |
| TTGGCACTTGCAAAACAATT+GGG | + | Chr5:6243000-6243019 | MsG0580024545.01.T01:CDS | 35.0% | |
| TTTACCACTCACACTTGAAA+CGG | - | Chr5:6242716-6242735 | None:intergenic | 35.0% | |
| TTTCATGTTTGGTATCACGT+TGG | + | Chr5:6243231-6243250 | MsG0580024545.01.T01:intron | 35.0% | |
| ! | GAGATGCATGTTTTCATGTT+TGG | + | Chr5:6243220-6243239 | MsG0580024545.01.T01:intron | 35.0% |
| ! | TCATTCCAAGAAGGTTTTTG+AGG | - | Chr5:6242337-6242356 | None:intergenic | 35.0% |
| !! | GTCCTAGATCTTAACTTGTA+CGG | + | Chr5:6243696-6243715 | MsG0580024545.01.T01:exon | 35.0% |
| !! | TGGCTTAATTGCTTTAGGAT+TGG | + | Chr5:6244047-6244066 | MsG0580024545.01.T01:three_prime_UTR | 35.0% |
| !! | TTAAGGTATTGAGGATTTGG+TGG | - | Chr5:6242268-6242287 | None:intergenic | 35.0% |
| !!! | AGTGCTTTGTTTTTTGAAGG+AGG | - | Chr5:6242145-6242164 | None:intergenic | 35.0% |
| !!! | CTTTGTTTTTTGAAGGAGGT+TGG | - | Chr5:6242141-6242160 | None:intergenic | 35.0% |
| !!! | TTGTTTTTTGAAGGAGGTTG+GGG | - | Chr5:6242139-6242158 | None:intergenic | 35.0% |
| AAGAAGACGCTGAAACTTCA+AGG | + | Chr5:6242806-6242825 | MsG0580024545.01.T01:CDS | 40.0% | |
| AGAAGCGAAAGAGAAGTTAC+AGG | + | Chr5:6242736-6242755 | MsG0580024545.01.T01:CDS | 40.0% | |
| AGACATGCAGAATCGAAGAA+CGG | + | Chr5:6242602-6242621 | MsG0580024545.01.T01:CDS | 40.0% | |
| AGAGAGAGAGAGAGAGATTA+TGG | - | Chr5:6242072-6242091 | None:intergenic | 40.0% | |
| AGAGAGAGAGAGATTATGGA+TGG | - | Chr5:6242068-6242087 | None:intergenic | 40.0% | |
| ATCCTTCCATTCTCTAGATC+TGG | + | Chr5:6242380-6242399 | MsG0580024545.01.T01:intron | 40.0% | |
| ATTGGACCAGATCTAGAGAA+TGG | - | Chr5:6242389-6242408 | None:intergenic | 40.0% | |
| GGTTTCAAAATCGTAGAGCA+AGG | + | Chr5:6243049-6243068 | MsG0580024545.01.T01:CDS | 40.0% | |
| GTGTATCAAAGGTCCTATGT+TGG | - | Chr5:6243673-6243692 | None:intergenic | 40.0% | |
| TACAGGTGAAGATCTTGACA+TGG | + | Chr5:6242753-6242772 | MsG0580024545.01.T01:CDS | 40.0% | |
| TCAAAGGTCCTATGTTGGAT+AGG | - | Chr5:6243668-6243687 | None:intergenic | 40.0% | |
| TTTACATGCAGATCGGGATT+CGG | + | Chr5:6242579-6242598 | MsG0580024545.01.T01:intron | 40.0% | |
| TTTGAGGGAAGCTCAAACTT+AGG | - | Chr5:6242243-6242262 | None:intergenic | 40.0% | |
| ! | GTGCTAGACAAGTTGAAGTT+TGG | + | Chr5:6243028-6243047 | MsG0580024545.01.T01:CDS | 40.0% |
| ! | TTGACCCCATTGTCTTCTTT+TGG | + | Chr5:6243866-6243885 | MsG0580024545.01.T01:three_prime_UTR | 40.0% |
| !!! | GAGGATTTGGTGGATTTTGA+GGG | - | Chr5:6242258-6242277 | None:intergenic | 40.0% |
| !!! | TGAGGATTTGGTGGATTTTG+AGG | - | Chr5:6242259-6242278 | None:intergenic | 40.0% |
| !!! | TGTTTTTTGAAGGAGGTTGG+GGG | - | Chr5:6242138-6242157 | None:intergenic | 40.0% |
| AAAGATATCCGGTGCATGTC+TGG | + | Chr5:6243120-6243139 | MsG0580024545.01.T01:intron | 45.0% | |
| CACATGGTAAGAGTTGTTGG+TGG | - | Chr5:6243527-6243546 | None:intergenic | 45.0% | |
| GACCAGATCTAGAGAATGGA+AGG | - | Chr5:6242385-6242404 | None:intergenic | 45.0% | |
| GATGTGAATCGGTTACCTTC+TGG | + | Chr5:6242646-6242665 | MsG0580024545.01.T01:CDS | 45.0% | |
| GCTGATTGTGAAGAAGAAGC+AGG | + | Chr5:6242670-6242689 | MsG0580024545.01.T01:CDS | 45.0% | |
| TCCGAGGAATCGATGTGAAT+CGG | + | Chr5:6242635-6242654 | MsG0580024545.01.T01:CDS | 45.0% | |
| TCGATTCCTCGGAGAAGTAA+AGG | - | Chr5:6242628-6242647 | None:intergenic | 45.0% | |
| TCTTCACAATCAGCACCAGA+AGG | - | Chr5:6242664-6242683 | None:intergenic | 45.0% | |
| ! | TCTAGGACGGAGTGTATCAA+AGG | - | Chr5:6243684-6243703 | None:intergenic | 45.0% |
| !! | ACACTTGAAACGGTGCTGTT+TGG | - | Chr5:6242706-6242725 | None:intergenic | 45.0% |
| !! | ACCGATTCACATCGATTCCT+CGG | - | Chr5:6242639-6242658 | None:intergenic | 45.0% |
| !! | TTGTTAATTAATAAAAATTA+AGG | - | Chr5:6242437-6242456 | None:intergenic | 5.0% |
| AACAGCAACACGCTCACAAG+AGG | - | Chr5:6243552-6243571 | None:intergenic | 50.0% | |
| ACAGCAACACGCTCACAAGA+GGG | - | Chr5:6243551-6243570 | None:intergenic | 50.0% | |
| ATGTTGGATAGGAGCAGCTG+TGG | - | Chr5:6243657-6243676 | None:intergenic | 50.0% | |
| CAGCTGCTCCTATCCAACAT+AGG | + | Chr5:6243657-6243676 | MsG0580024545.01.T01:CDS | 50.0% | |
| CTGTGATACCAGACATGCAC+CGG | - | Chr5:6243131-6243150 | None:intergenic | 50.0% | |
| GGAAATGGACGTGGGTGATT+TGG | - | Chr5:6243620-6243639 | None:intergenic | 50.0% | |
| GGGCACATGGTAAGAGTTGT+TGG | - | Chr5:6243530-6243549 | None:intergenic | 50.0% | |
| TCCATTTCCTGTGGGACCAT+GGG | + | Chr5:6243631-6243650 | MsG0580024545.01.T01:CDS | 50.0% | |
| ! | AGCACCGTTTCAAGTGTGAG+TGG | + | Chr5:6242709-6242728 | MsG0580024545.01.T01:CDS | 50.0% |
| CACCCACGTCCATTTCCTGT+GGG | + | Chr5:6243623-6243642 | MsG0580024545.01.T01:CDS | 55.0% | |
| CAGCAACACGCTCACAAGAG+GGG | - | Chr5:6243550-6243569 | None:intergenic | 55.0% | |
| GAACGGCCTTTACTTCTCCG+AGG | + | Chr5:6242619-6242638 | MsG0580024545.01.T01:CDS | 55.0% | |
| GCAGCATCAACGGCAGATGA+TGG | - | Chr5:6243575-6243594 | None:intergenic | 55.0% | |
| GTCCATTTCCTGTGGGACCA+TGG | + | Chr5:6243630-6243649 | MsG0580024545.01.T01:CDS | 55.0% | |
| GTCCCACAGGAAATGGACGT+GGG | - | Chr5:6243628-6243647 | None:intergenic | 55.0% | |
| TCACCCACGTCCATTTCCTG+TGG | + | Chr5:6243622-6243641 | MsG0580024545.01.T01:CDS | 55.0% | |
| TTTGAAGGAGGTTGGGGGAG+AGG | - | Chr5:6242133-6242152 | None:intergenic | 55.0% | |
| ! | CGTGGGTGATTTGGAGCCAT+AGG | - | Chr5:6243611-6243630 | None:intergenic | 55.0% |
| ACGACGCGTGGCAGCATCAA+CGG | - | Chr5:6243585-6243604 | None:intergenic | 60.0% | |
| AGCCATAGGATGACGACGCG+TGG | - | Chr5:6243597-6243616 | None:intergenic | 60.0% | |
| ATAGGAGCAGCTGTGGCCCA+TGG | - | Chr5:6243650-6243669 | None:intergenic | 60.0% | |
| GCCCATGGTCCCACAGGAAA+TGG | - | Chr5:6243635-6243654 | None:intergenic | 60.0% | |
| GGTCCCACAGGAAATGGACG+TGG | - | Chr5:6243629-6243648 | None:intergenic | 60.0% | |
| TGCCACGCGTCGTCATCCTA+TGG | + | Chr5:6243592-6243611 | MsG0580024545.01.T01:CDS | 60.0% | |
| ! | ACGCTCACAAGAGGGGCACA+TGG | - | Chr5:6243543-6243562 | None:intergenic | 60.0% |
| GCTGTGGCCCATGGTCCCAC+AGG | - | Chr5:6243641-6243660 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 6242057 | 6244126 | 6242057 | ID=MsG0580024545.01;Name=MsG0580024545.01 |
| Chr5 | mRNA | 6242057 | 6244126 | 6242057 | ID=MsG0580024545.01.T01;Parent=MsG0580024545.01;Name=MsG0580024545.01.T01;_AED=0.18;_eAED=0.18;_QI=151|1|1|1|1|1|4|417|296 |
| Chr5 | exon | 6242057 | 6242373 | 6242057 | ID=MsG0580024545.01.T01:exon:25766;Parent=MsG0580024545.01.T01 |
| Chr5 | exon | 6242590 | 6242903 | 6242590 | ID=MsG0580024545.01.T01:exon:25767;Parent=MsG0580024545.01.T01 |
| Chr5 | exon | 6242991 | 6243070 | 6242991 | ID=MsG0580024545.01.T01:exon:25768;Parent=MsG0580024545.01.T01 |
| Chr5 | exon | 6243379 | 6244126 | 6243379 | ID=MsG0580024545.01.T01:exon:25769;Parent=MsG0580024545.01.T01 |
| Chr5 | five_prime_UTR | 6242057 | 6242207 | 6242057 | ID=MsG0580024545.01.T01:five_prime_utr;Parent=MsG0580024545.01.T01 |
| Chr5 | CDS | 6242208 | 6242373 | 6242208 | ID=MsG0580024545.01.T01:cds;Parent=MsG0580024545.01.T01 |
| Chr5 | CDS | 6242590 | 6242903 | 6242590 | ID=MsG0580024545.01.T01:cds;Parent=MsG0580024545.01.T01 |
| Chr5 | CDS | 6242991 | 6243070 | 6242991 | ID=MsG0580024545.01.T01:cds;Parent=MsG0580024545.01.T01 |
| Chr5 | CDS | 6243379 | 6243709 | 6243379 | ID=MsG0580024545.01.T01:cds;Parent=MsG0580024545.01.T01 |
| Chr5 | three_prime_UTR | 6243710 | 6244126 | 6243710 | ID=MsG0580024545.01.T01:three_prime_utr;Parent=MsG0580024545.01.T01 |
| Gene Sequence |
| Protein sequence |
