AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024751.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024751.01.T01 MTR_5g015810 93.353 331 11 1 1 331 1 320 0.0 627
MsG0580024751.01.T01 MTR_5g015810 96.787 249 8 0 83 331 1 249 2.92e-179 499
MsG0580024751.01.T01 MTR_4g095700 66.369 336 92 5 3 328 1 325 8.94e-160 453
MsG0580024751.01.T01 MTR_5g015810 97.537 203 5 0 129 331 1 203 1.94e-144 409
MsG0580024751.01.T01 MTR_4g007130 47.720 329 140 6 2 328 17 315 1.06e-97 295
MsG0580024751.01.T01 MTR_3g465010 46.417 321 141 6 11 329 8 299 8.14e-89 271
MsG0580024751.01.T01 MTR_4g122030 38.655 238 117 8 9 239 11 226 3.29e-39 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024751.01.T01 AT2G23060 63.636 341 95 5 6 330 2 329 1.24e-149 427
MsG0580024751.01.T01 AT4G37580 63.077 325 108 3 10 330 3 319 1.15e-141 407
MsG0580024751.01.T01 AT5G67430 56.211 322 118 4 9 330 8 306 3.94e-122 356
MsG0580024751.01.T01 AT4G37580 65.759 257 84 2 78 330 6 262 1.59e-115 338
MsG0580024751.01.T01 AT5G67430 59.274 248 94 2 83 330 1 241 5.12e-100 298
MsG0580024751.01.T01 AT2G23060 66.667 195 62 1 139 330 1 195 7.38e-93 278
MsG0580024751.01.T01 AT2G30090 40.187 321 151 5 11 329 15 296 7.22e-69 220

Find 90 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAAAACGACACGTATTT+TGG 0.139903 5:-9211044 MsG0580024751.01.T01:CDS
CCGGATTTGTTTAGGCCTTT+TGG 0.177590 5:-9210986 MsG0580024751.01.T01:CDS
CTTAACCATCTTCACTTCTT+TGG 0.188076 5:+9210929 None:intergenic
TGGCCCAGATAGGTTTCTTT+TGG 0.229875 5:-9211161 MsG0580024751.01.T01:CDS
CTCATAATTGCAAGTATATA+TGG 0.244563 5:+9212193 None:intergenic
GATATGATATTCTATGTTCT+TGG 0.266238 5:-9211860 MsG0580024751.01.T01:CDS
TTAGTTTGCTTGCACCAATT+TGG 0.277288 5:+9212446 None:intergenic
TTAACCATCTTCACTTCTTT+GGG 0.280700 5:+9210930 None:intergenic
TGCTTGGTGACCCCATTTGC+AGG 0.320702 5:-9212045 MsG0580024751.01.T01:CDS
TATCTGATTATATTCCAAAT+TGG 0.322926 5:-9212460 None:intergenic
GCCTAAAATGTAAGCGAGTT+TGG 0.325207 5:+9211710 None:intergenic
AGAACAGCGTCAATGTCATT+AGG 0.331188 5:+9211253 None:intergenic
CTTAATAACAAACTTAATCT+AGG 0.336122 5:-9211232 MsG0580024751.01.T01:CDS
TAAGCGAGTTTGGTGTAAAC+TGG 0.336993 5:+9211720 None:intergenic
TTTGGACCCACCTTGTTCTT+GGG 0.345593 5:-9211143 MsG0580024751.01.T01:CDS
CGTCGGTTCCGGATTTGTTT+AGG 0.361537 5:-9210994 MsG0580024751.01.T01:CDS
CGGCGCTGAATATTCATATA+TGG 0.362736 5:-9211476 MsG0580024751.01.T01:CDS
TTGGTAGCGTACCGTTGATT+AGG 0.367983 5:+9211675 None:intergenic
GGGTCCAAAAGAAACCTATC+TGG 0.369698 5:+9211157 None:intergenic
GTTGAAGGTACCGTCGGTTC+CGG 0.377354 5:-9211005 MsG0580024751.01.T01:CDS
TCTATGTTCTTGGTTTCAAC+AGG 0.399981 5:-9211850 MsG0580024751.01.T01:CDS
TTTGTTCTGTGAGCATAAAC+GGG 0.400112 5:+9211364 None:intergenic
GTAATATGAGCTTATATAGA+TGG 0.400350 5:+9212269 None:intergenic
CCGGGCTTTGCCGTGGTTGA+AGG 0.401375 5:-9211020 MsG0580024751.01.T01:CDS
TGGTGCAGGAGAATGGGAAT+AGG 0.414994 5:-9211541 MsG0580024751.01.T01:intron
GAACAGCGTCAATGTCATTA+GGG 0.415763 5:+9211254 None:intergenic
TGAGTGGCGGACCCTGCAAA+TGG 0.420570 5:+9212033 None:intergenic
AAGCAATGCTACGAAGAAAT+CGG 0.423113 5:+9212377 None:intergenic
ATAAAAGAATGGGAGAATAA+TGG 0.425479 5:+9212228 None:intergenic
GGCGCGTCGCGTGTCAAGCG+CGG 0.428563 5:-9211070 MsG0580024751.01.T01:CDS
GCGCGTCGCGTGTCAAGCGC+GGG 0.431919 5:-9211069 MsG0580024751.01.T01:CDS
GAGTGGCGGACCCTGCAAAT+GGG 0.439578 5:+9212034 None:intergenic
CTCACCTTCTTTCCTCATGC+TGG 0.441437 5:-9212014 MsG0580024751.01.T01:intron
GAAATAGTTGGAATGATAAG+AGG 0.455218 5:-9211810 MsG0580024751.01.T01:CDS
GGTGCAGGAGAATGGGAATA+GGG 0.455976 5:-9211540 MsG0580024751.01.T01:intron
GAAATTGATAAAGAAATAGT+TGG 0.468243 5:-9211822 MsG0580024751.01.T01:CDS
TGACGAGAATTGACGGTGTA+CGG 0.468550 5:+9211389 None:intergenic
TCTCTCTTCACCGACATGCT+TGG 0.485318 5:-9212061 MsG0580024751.01.T01:CDS
AGCCAAGAAGATAAAAGAAT+GGG 0.486110 5:+9212218 None:intergenic
TACAGTGTCAAAACATGGCC+TGG 0.491753 5:-9211181 MsG0580024751.01.T01:CDS
ATGTTCTTGGTTTCAACAGG+TGG 0.498446 5:-9211847 MsG0580024751.01.T01:CDS
TGCTACGAAGAAATCGGAAT+AGG 0.499274 5:+9212383 None:intergenic
AAGCCAAGAAGATAAAAGAA+TGG 0.503906 5:+9212217 None:intergenic
AAGTGTTTGGAATTCTAAAG+AGG 0.505817 5:-9211113 MsG0580024751.01.T01:CDS
CCAAAAGGCCTAAACAAATC+CGG 0.512387 5:+9210986 None:intergenic
CCTTCAACCACGGCAAAGCC+CGG 0.518891 5:+9211020 None:intergenic
ACGGCGTCAGAAGGAGTTAA+CGG 0.524819 5:+9211316 None:intergenic
TATACCAGCATGAGGAAAGA+AGG 0.530072 5:+9212010 None:intergenic
ACCGACGGTACCTTCAACCA+CGG 0.534359 5:+9211010 None:intergenic
AAACATGGCCTGGCCCAGAT+AGG 0.535009 5:-9211171 MsG0580024751.01.T01:CDS
TAGAATATAACGGCGTCAGA+AGG 0.539306 5:+9211307 None:intergenic
AAAAGAAACCTATCTGGGCC+AGG 0.540432 5:+9211163 None:intergenic
GAGCTTATATAGATGGAACT+TGG 0.540939 5:+9212276 None:intergenic
GCTTGGTGACCCCATTTGCA+GGG 0.548286 5:-9212044 MsG0580024751.01.T01:CDS
GTTGAAAGGACATGTGAAGT+TGG 0.549405 5:-9212100 MsG0580024751.01.T01:CDS
AAGAGAGAAAGTTGGTCACT+AGG 0.553217 5:+9212076 None:intergenic
AAAGAGTAGAAGCAGTTGAA+AGG 0.557149 5:-9212114 MsG0580024751.01.T01:CDS
AGAAGGAGTTAACGGAATGA+TGG 0.559153 5:+9211324 None:intergenic
ACGGGGTTGACGAGAATTGA+CGG 0.566648 5:+9211382 None:intergenic
AAAACTCTACGGTAGAGAAA+CGG 0.566914 5:+9211278 None:intergenic
GCCGTGGTTGAAGGTACCGT+CGG 0.570164 5:-9211011 MsG0580024751.01.T01:CDS
ACTGTAGGACCCACTTGGTA+CGG 0.571473 5:+9211198 None:intergenic
TTGACACTGTAGGACCCACT+TGG 0.573131 5:+9211193 None:intergenic
AGTGGCGGACCCTGCAAATG+GGG 0.573181 5:+9212035 None:intergenic
TGAATATTCATATATGGCAA+CGG 0.574189 5:-9211470 MsG0580024751.01.T01:CDS
TTCGTGTTTCTCCTAATCAA+CGG 0.578954 5:-9211686 MsG0580024751.01.T01:intron
GAGGCATGGTTTAAAGATAA+CGG 0.582283 5:-9211496 MsG0580024751.01.T01:CDS
CTACGGTAGAGAAACGGTTA+CGG 0.585607 5:+9211284 None:intergenic
TAGGTAGGAGACAGAAATGA+GGG 0.587994 5:+9212402 None:intergenic
GGTCCAAAAGAAACCTATCT+GGG 0.592928 5:+9211158 None:intergenic
TTATATAGATGGAACTTGGA+AGG 0.597598 5:+9212280 None:intergenic
TGTCGGTGAAGAGAGAAAGT+TGG 0.598088 5:+9212068 None:intergenic
CTCTCGAACAATCACACTAA+CGG 0.599043 5:+9212159 None:intergenic
TGTGAATATATACCAGCATG+AGG 0.601698 5:+9212002 None:intergenic
ACGGTTACGGTAGAATATAA+CGG 0.610597 5:+9211297 None:intergenic
ACGAAGAAATCGGAATAGGT+AGG 0.617733 5:+9212387 None:intergenic
CTTAAAATAGCCCAAGAACA+AGG 0.618666 5:+9211133 None:intergenic
AAATAGCCCAAGAACAAGGT+GGG 0.635584 5:+9211137 None:intergenic
ATAGGTAGGAGACAGAAATG+AGG 0.640759 5:+9212401 None:intergenic
GCATGAGGAAAGAAGGTGAG+TGG 0.642413 5:+9212017 None:intergenic
CTAAACAAATCCGGAACCGA+CGG 0.646252 5:+9210995 None:intergenic
GGTCCTACAGTGTCAAAACA+TGG 0.647080 5:-9211186 MsG0580024751.01.T01:CDS
AGAATAATGGTGTATGTGTG+TGG 0.647098 5:+9212241 None:intergenic
AATGGGGTCACCAAGCATGT+CGG 0.667448 5:+9212051 None:intergenic
AAAATAGCCCAAGAACAAGG+TGG 0.667856 5:+9211136 None:intergenic
TGAGGAAAGAAGGTGAGTGG+CGG 0.676708 5:+9212020 None:intergenic
TTGTTCTGTGAGCATAAACG+GGG 0.686756 5:+9211365 None:intergenic
AAGCGAGTTTGGTGTAAACT+GGG 0.687492 5:+9211721 None:intergenic
GTTGATTAGGAGAAACACGA+AGG 0.743361 5:+9211688 None:intergenic
AGGTAGGAGACAGAAATGAG+GGG 0.743618 5:+9212403 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAAACAAAATAACTG+CGG + Chr5:9211501-9211520 None:intergenic 15.0%
!! CTTAATAACAAACTTAATCT+AGG - Chr5:9212157-9212176 MsG0580024751.01.T01:CDS 20.0%
!! GAAATTGATAAAGAAATAGT+TGG - Chr5:9211567-9211586 MsG0580024751.01.T01:intron 20.0%
! AACATAGAATATCATATCTC+TGG + Chr5:9211527-9211546 None:intergenic 25.0%
! ATAAAAGAATGGGAGAATAA+TGG + Chr5:9211164-9211183 None:intergenic 25.0%
! CTCATAATTGCAAGTATATA+TGG + Chr5:9211199-9211218 None:intergenic 25.0%
! GATATGATATTCTATGTTCT+TGG - Chr5:9211529-9211548 MsG0580024751.01.T01:CDS 25.0%
! GTAATATGAGCTTATATAGA+TGG + Chr5:9211123-9211142 None:intergenic 25.0%
! TACAAAAAATGAAACCCAAA+AGG + Chr5:9212421-9212440 None:intergenic 25.0%
! TGAATATTCATATATGGCAA+CGG - Chr5:9211919-9211938 MsG0580024751.01.T01:intron 25.0%
! TGCATAAACATTTGATATGT+TGG + Chr5:9211736-9211755 None:intergenic 25.0%
!! TTTTCTTAATCTGTGTGAAT+TGG - Chr5:9211474-9211493 MsG0580024751.01.T01:CDS 25.0%
!!! TTGGGTTTCATTTTTTGTAT+GGG - Chr5:9212422-9212441 MsG0580024751.01.T01:five_prime_UTR 25.0%
!!! TTTAACGGATGCTAAATTTT+CGG + Chr5:9211948-9211967 None:intergenic 25.0%
!!! TTTGGGTTTCATTTTTTGTA+TGG - Chr5:9212421-9212440 MsG0580024751.01.T01:five_prime_UTR 25.0%
!!! TTTTTCAGTGAAGAGTTTAA+CGG + Chr5:9211963-9211982 None:intergenic 25.0%
AAACTCTTCACTGAAAAATG+CGG - Chr5:9211965-9211984 MsG0580024751.01.T01:intron 30.0%
AAGCCAAGAAGATAAAAGAA+TGG + Chr5:9211175-9211194 None:intergenic 30.0%
AGCCAAGAAGATAAAAGAAT+GGG + Chr5:9211174-9211193 None:intergenic 30.0%
GAAATAGTTGGAATGATAAG+AGG - Chr5:9211579-9211598 MsG0580024751.01.T01:intron 30.0%
GTTGAAGCTAGTGAAAAAAA+TGG - Chr5:9211871-9211890 MsG0580024751.01.T01:intron 30.0%
TTATATAGATGGAACTTGGA+AGG + Chr5:9211112-9211131 None:intergenic 30.0%
! AAGTGTTTGGAATTCTAAAG+AGG - Chr5:9212276-9212295 MsG0580024751.01.T01:five_prime_UTR 30.0%
! TTTTGTTCTGTGAGCATAAA+CGG + Chr5:9212029-9212048 None:intergenic 30.0%
!!! TCTTGTTGTACTGTTTTTGA+TGG - Chr5:9211828-9211847 MsG0580024751.01.T01:CDS 30.0%
!!! TTCATTTTTTGTATGGGCTT+GGG - Chr5:9212428-9212447 MsG0580024751.01.T01:five_prime_UTR 30.0%
!!! TTTCATTTTTTGTATGGGCT+TGG - Chr5:9212427-9212446 MsG0580024751.01.T01:five_prime_UTR 30.0%
AAAACTCTACGGTAGAGAAA+CGG + Chr5:9212114-9212133 None:intergenic 35.0%
AAAGAGTAGAAGCAGTTGAA+AGG - Chr5:9211275-9211294 MsG0580024751.01.T01:CDS 35.0%
AAGCAATGCTACGAAGAAAT+CGG + Chr5:9211015-9211034 None:intergenic 35.0%
ACGGTTACGGTAGAATATAA+CGG + Chr5:9212095-9212114 None:intergenic 35.0%
AGAATAATGGTGTATGTGTG+TGG + Chr5:9211151-9211170 None:intergenic 35.0%
CTTAAAATAGCCCAAGAACA+AGG + Chr5:9212259-9212278 None:intergenic 35.0%
GAAGCTAGTGAAAAAAATGG+AGG - Chr5:9211874-9211893 MsG0580024751.01.T01:intron 35.0%
GAGCTTATATAGATGGAACT+TGG + Chr5:9211116-9211135 None:intergenic 35.0%
GAGGCATGGTTTAAAGATAA+CGG - Chr5:9211893-9211912 MsG0580024751.01.T01:intron 35.0%
GTCATTAGGGAAAAACTCTA+CGG + Chr5:9212125-9212144 None:intergenic 35.0%
TAGTGAAAAAAATGGAGGCA+TGG - Chr5:9211879-9211898 MsG0580024751.01.T01:intron 35.0%
TCTATGTTCTTGGTTTCAAC+AGG - Chr5:9211539-9211558 MsG0580024751.01.T01:intron 35.0%
TGCATAAAAACAGTCACATG+CGG - Chr5:9211603-9211622 MsG0580024751.01.T01:intron 35.0%
TGTGAATATATACCAGCATG+AGG + Chr5:9211390-9211409 None:intergenic 35.0%
TTCGTGTTTCTCCTAATCAA+CGG - Chr5:9211703-9211722 MsG0580024751.01.T01:CDS 35.0%
TTTGTTCTGTGAGCATAAAC+GGG + Chr5:9212028-9212047 None:intergenic 35.0%
! ACCAAACTCGCTTACATTTT+AGG - Chr5:9211678-9211697 MsG0580024751.01.T01:intron 35.0%
! CTCCCATTCTTTTATCTTCT+TGG - Chr5:9211169-9211188 MsG0580024751.01.T01:CDS 35.0%
! TGCTAAAACGACACGTATTT+TGG - Chr5:9212345-9212364 MsG0580024751.01.T01:five_prime_UTR 35.0%
!! CTTGGGCTATTTTAAGTGTT+TGG - Chr5:9212263-9212282 MsG0580024751.01.T01:five_prime_UTR 35.0%
!! TAAAGAGGTTTTTAAGCTCG+AGG - Chr5:9212291-9212310 MsG0580024751.01.T01:five_prime_UTR 35.0%
!! TTAGTTTGCTTGCACCAATT+TGG + Chr5:9210946-9210965 None:intergenic 35.0%
!!! TCATTTTTTGTATGGGCTTG+GGG - Chr5:9212429-9212448 MsG0580024751.01.T01:five_prime_UTR 35.0%
AAAATAGCCCAAGAACAAGG+TGG + Chr5:9212256-9212275 None:intergenic 40.0%
AAATAGCCCAAGAACAAGGT+GGG + Chr5:9212255-9212274 None:intergenic 40.0%
ACGAAGAAATCGGAATAGGT+AGG + Chr5:9211005-9211024 None:intergenic 40.0%
AGAACAGCGTCAATGTCATT+AGG + Chr5:9212139-9212158 None:intergenic 40.0%
AGAAGGAGTTAACGGAATGA+TGG + Chr5:9212068-9212087 None:intergenic 40.0%
ATAGGTAGGAGACAGAAATG+AGG + Chr5:9210991-9211010 None:intergenic 40.0%
ATGTTCTTGGTTTCAACAGG+TGG - Chr5:9211542-9211561 MsG0580024751.01.T01:intron 40.0%
CCAAAAGGCCTAAACAAATC+CGG + Chr5:9212406-9212425 None:intergenic 40.0%
CTCTCGAACAATCACACTAA+CGG + Chr5:9211233-9211252 None:intergenic 40.0%
GAACAGCGTCAATGTCATTA+GGG + Chr5:9212138-9212157 None:intergenic 40.0%
GCCTAAAATGTAAGCGAGTT+TGG + Chr5:9211682-9211701 None:intergenic 40.0%
GGTCCAAAAGAAACCTATCT+GGG + Chr5:9212234-9212253 None:intergenic 40.0%
GTTGAAAGGACATGTGAAGT+TGG - Chr5:9211289-9211308 MsG0580024751.01.T01:CDS 40.0%
GTTGATTAGGAGAAACACGA+AGG + Chr5:9211704-9211723 None:intergenic 40.0%
TAGAATATAACGGCGTCAGA+AGG + Chr5:9212085-9212104 None:intergenic 40.0%
TAGGTAGGAGACAGAAATGA+GGG + Chr5:9210990-9211009 None:intergenic 40.0%
TATACCAGCATGAGGAAAGA+AGG + Chr5:9211382-9211401 None:intergenic 40.0%
TGCTACGAAGAAATCGGAAT+AGG + Chr5:9211009-9211028 None:intergenic 40.0%
TTGTTCTGTGAGCATAAACG+GGG + Chr5:9212027-9212046 None:intergenic 40.0%
! AAGAGAGAAAGTTGGTCACT+AGG + Chr5:9211316-9211335 None:intergenic 40.0%
! CGGCGCTGAATATTCATATA+TGG - Chr5:9211913-9211932 MsG0580024751.01.T01:intron 40.0%
!! AAACGACACGTATTTTGGAC+CGG - Chr5:9212350-9212369 MsG0580024751.01.T01:five_prime_UTR 40.0%
!! AAGCGAGTTTGGTGTAAACT+GGG + Chr5:9211671-9211690 None:intergenic 40.0%
!! CGGATTTGTTTAGGCCTTTT+GGG - Chr5:9212404-9212423 MsG0580024751.01.T01:five_prime_UTR 40.0%
!! TAAGCGAGTTTGGTGTAAAC+TGG + Chr5:9211672-9211691 None:intergenic 40.0%
!!! CATTTTTTGTATGGGCTTGG+GGG - Chr5:9212430-9212449 MsG0580024751.01.T01:five_prime_UTR 40.0%
!!! TGTACTGTTTTTGATGGTGC+AGG - Chr5:9211834-9211853 MsG0580024751.01.T01:CDS 40.0%
!!! TTTTGATGGTGCAGGAGAAT+GGG - Chr5:9211842-9211861 MsG0580024751.01.T01:CDS 40.0%
!!! TTTTTGATGGTGCAGGAGAA+TGG - Chr5:9211841-9211860 MsG0580024751.01.T01:CDS 40.0%
AAAAGAAACCTATCTGGGCC+AGG + Chr5:9212229-9212248 None:intergenic 45.0%
AGGTAGGAGACAGAAATGAG+GGG + Chr5:9210989-9211008 None:intergenic 45.0%
CTAAACAAATCCGGAACCGA+CGG + Chr5:9212397-9212416 None:intergenic 45.0%
CTACGGTAGAGAAACGGTTA+CGG + Chr5:9212108-9212127 None:intergenic 45.0%
GGGTCCAAAAGAAACCTATC+TGG + Chr5:9212235-9212254 None:intergenic 45.0%
GGTCCTACAGTGTCAAAACA+TGG - Chr5:9212203-9212222 MsG0580024751.01.T01:five_prime_UTR 45.0%
TACAGTGTCAAAACATGGCC+TGG - Chr5:9212208-9212227 MsG0580024751.01.T01:five_prime_UTR 45.0%
TGACGAGAATTGACGGTGTA+CGG + Chr5:9212003-9212022 None:intergenic 45.0%
TGTCGGTGAAGAGAGAAAGT+TGG + Chr5:9211324-9211343 None:intergenic 45.0%
TTTGGACCCACCTTGTTCTT+GGG - Chr5:9212246-9212265 MsG0580024751.01.T01:five_prime_UTR 45.0%
! ACTTTTCTTGCCGTACCAAG+TGG - Chr5:9212181-9212200 MsG0580024751.01.T01:exon 45.0%
! CTTTTCTTGCCGTACCAAGT+GGG - Chr5:9212182-9212201 MsG0580024751.01.T01:exon 45.0%
! TGGCCCAGATAGGTTTCTTT+TGG - Chr5:9212228-9212247 MsG0580024751.01.T01:five_prime_UTR 45.0%
! TTTTGGACCCACCTTGTTCT+TGG - Chr5:9212245-9212264 MsG0580024751.01.T01:five_prime_UTR 45.0%
!! AACGACACGTATTTTGGACC+GGG - Chr5:9212351-9212370 MsG0580024751.01.T01:five_prime_UTR 45.0%
!! CCGGATTTGTTTAGGCCTTT+TGG - Chr5:9212403-9212422 MsG0580024751.01.T01:five_prime_UTR 45.0%
!! GTTTTTAAGCTCGAGGTACG+TGG - Chr5:9212298-9212317 MsG0580024751.01.T01:five_prime_UTR 45.0%
!! TTGGTAGCGTACCGTTGATT+AGG + Chr5:9211717-9211736 None:intergenic 45.0%
!!! AGGCCATGTTTTGACACTGT+AGG + Chr5:9212209-9212228 None:intergenic 45.0%
AATGGGGTCACCAAGCATGT+CGG + Chr5:9211341-9211360 None:intergenic 50.0%
ACGGCGTCAGAAGGAGTTAA+CGG + Chr5:9212076-9212095 None:intergenic 50.0%
ACGGGGTTGACGAGAATTGA+CGG + Chr5:9212010-9212029 None:intergenic 50.0%
ACTGTAGGACCCACTTGGTA+CGG + Chr5:9212194-9212213 None:intergenic 50.0%
CTCACCTTCTTTCCTCATGC+TGG - Chr5:9211375-9211394 MsG0580024751.01.T01:CDS 50.0%
GCATGAGGAAAGAAGGTGAG+TGG + Chr5:9211375-9211394 None:intergenic 50.0%
GGTGCAGGAGAATGGGAATA+GGG - Chr5:9211849-9211868 MsG0580024751.01.T01:CDS 50.0%
TCTCTCTTCACCGACATGCT+TGG - Chr5:9211328-9211347 MsG0580024751.01.T01:CDS 50.0%
TGAGGAAAGAAGGTGAGTGG+CGG + Chr5:9211372-9211391 None:intergenic 50.0%
TGGTGCAGGAGAATGGGAAT+AGG - Chr5:9211848-9211867 MsG0580024751.01.T01:CDS 50.0%
TTGACACTGTAGGACCCACT+TGG + Chr5:9212199-9212218 None:intergenic 50.0%
!! CGTCGGTTCCGGATTTGTTT+AGG - Chr5:9212395-9212414 MsG0580024751.01.T01:five_prime_UTR 50.0%
AAACATGGCCTGGCCCAGAT+AGG - Chr5:9212218-9212237 MsG0580024751.01.T01:five_prime_UTR 55.0%
ACCGACGGTACCTTCAACCA+CGG + Chr5:9212382-9212401 None:intergenic 55.0%
TTGTATGGGCTTGGGGGTGA+AGG - Chr5:9212436-9212455 MsG0580024751.01.T01:five_prime_UTR 55.0%
! GCTTGGTGACCCCATTTGCA+GGG - Chr5:9211345-9211364 MsG0580024751.01.T01:CDS 55.0%
! TGCTTGGTGACCCCATTTGC+AGG - Chr5:9211344-9211363 MsG0580024751.01.T01:CDS 55.0%
!! GTTGAAGGTACCGTCGGTTC+CGG - Chr5:9212384-9212403 MsG0580024751.01.T01:five_prime_UTR 55.0%
CCTTCAACCACGGCAAAGCC+CGG + Chr5:9212372-9212391 None:intergenic 60.0%
! TTTTGGACCGGGCTTTGCCG+TGG - Chr5:9212362-9212381 MsG0580024751.01.T01:five_prime_UTR 60.0%
!! AGTGGCGGACCCTGCAAATG+GGG + Chr5:9211357-9211376 None:intergenic 60.0%
!! GAGTGGCGGACCCTGCAAAT+GGG + Chr5:9211358-9211377 None:intergenic 60.0%
!! GCCGTGGTTGAAGGTACCGT+CGG - Chr5:9212378-9212397 MsG0580024751.01.T01:five_prime_UTR 60.0%
!! TGAGTGGCGGACCCTGCAAA+TGG + Chr5:9211359-9211378 None:intergenic 60.0%
CCGGGCTTTGCCGTGGTTGA+AGG - Chr5:9212369-9212388 MsG0580024751.01.T01:five_prime_UTR 65.0%
GCGCGTCGCGTGTCAAGCGC+GGG - Chr5:9212320-9212339 MsG0580024751.01.T01:five_prime_UTR 75.0%
GGCGCGTCGCGTGTCAAGCG+CGG - Chr5:9212319-9212338 MsG0580024751.01.T01:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 9210940 9212471 9210940 ID=MsG0580024751.01;Name=MsG0580024751.01
Chr5 mRNA 9210940 9212471 9210940 ID=MsG0580024751.01.T01;Parent=MsG0580024751.01;Name=MsG0580024751.01.T01;_AED=0.48;_eAED=0.48;_QI=274|0.5|0.66|1|1|1|3|0|331
Chr5 exon 9210940 9211555 9210940 ID=MsG0580024751.01.T01:exon:19533;Parent=MsG0580024751.01.T01
Chr5 exon 9211687 9211883 9211687 ID=MsG0580024751.01.T01:exon:19532;Parent=MsG0580024751.01.T01
Chr5 exon 9212015 9212471 9212015 ID=MsG0580024751.01.T01:exon:19531;Parent=MsG0580024751.01.T01
Chr5 five_prime_UTR 9212198 9212471 9212198 ID=MsG0580024751.01.T01:five_prime_utr;Parent=MsG0580024751.01.T01
Chr5 CDS 9212015 9212197 9212015 ID=MsG0580024751.01.T01:cds;Parent=MsG0580024751.01.T01
Chr5 CDS 9211687 9211883 9211687 ID=MsG0580024751.01.T01:cds;Parent=MsG0580024751.01.T01
Chr5 CDS 9210940 9211555 9210940 ID=MsG0580024751.01.T01:cds;Parent=MsG0580024751.01.T01
Gene Sequence

>MsG0580024751.01.T01

ATGAGAGTTGATGAATCCGTTAGTGTGATTGTTCGAGAGTTCGAAGTTAATAAAGACAAAGAAAGAGTAGAAGCAGTTGAAAGGACATGTGAAGTTGGACCTAGTGACCAACTTTCTCTCTTCACCGACATGCTTGGTGACCCCATTTGCAGGGTCCGCCACTCACCTTCTTTCCTCATGCTGAGATATGATATTCTATGTTCTTGGTTTCAACAGGTGGCTGAAATTGATAAAGAAATAGTTGGAATGATAAGAGGATGCATAAAAACAGTCACATGCGGTAAAAACGTCTCAAGATCGAAAACATCTCTCACTAAACACATCCCAGTTTACACCAAACTCGCTTACATTTTAGGCCTTCGTGTTTCTCCTAATCAACGGAGAATGGGAATAGGGTTGAAGCTAGTGAAAAAAATGGAGGCATGGTTTAAAGATAACGGCGCTGAATATTCATATATGGCAACGGAAACCGAAAATTTAGCATCCGTTAAACTCTTCACTGAAAAATGCGGTTATTCAAAGTTCCGTACACCGTCAATTCTCGTCAACCCCGTTTATGCTCACAGAACAAAAATTTCAAGAAAAGTCACCATCATTCCGTTAACTCCTTCTGACGCCGTTATATTCTACCGTAACCGTTTCTCTACCGTAGAGTTTTTCCCTAATGACATTGACGCTGTTCTTAATAACAAACTTAATCTAGGTACTTTTCTTGCCGTACCAAGTGGGTCCTACAGTGTCAAAACATGGCCTGGCCCAGATAGGTTTCTTTTGGACCCACCTTGTTCTTGGGCTATTTTAAGTGTTTGGAATTCTAAAGAGGTTTTTAAGCTCGAGGTACGTGGCGCGTCGCGTGTCAAGCGCGGGCTTGCTAAAACGACACGTATTTTGGACCGGGCTTTGCCGTGGTTGAAGGTACCGTCGGTTCCGGATTTGTTTAGGCCTTTTGGGTTTCATTTTTTGTATGGGCTTGGGGGTGAAGGCCCAAAGAAGTGA
Protein sequence

>MsG0580024751.01.T01

MRVDESVSVIVREFEVNKDKERVEAVERTCEVGPSDQLSLFTDMLGDPICRVRHSPSFLMLRYDILCSWFQQVAEIDKEIVGMIRGCIKTVTCGKNVSRSKTSLTKHIPVYTKLAYILGLRVSPNQRRMGIGLKLVKKMEAWFKDNGAEYSYMATETENLASVKLFTEKCGYSKFRTPSILVNPVYAHRTKISRKVTIIPLTPSDAVIFYRNRFSTVEFFPNDIDAVLNNKLNLGTFLAVPSGSYSVKTWPGPDRFLLDPPCSWAILSVWNSKEVFKLEVRGASRVKRGLAKTTRILDRALPWLKVPSVPDLFRPFGFHFLYGLGGEGPKK*