Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024828.01.T01 | XP_003611755.1 | 85.2 | 250 | 16 | 3 | 1 | 250 | 1 | 229 | 1.41E-142 | 409 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024828.01.T01 | G7K6Q6 | 85.200 | 250 | 16 | 3 | 1 | 250 | 1 | 229 | 6.74e-143 | 409 |
Gene ID | Type | Classification |
---|---|---|
MsG0580024828.01.T01 | TF | Trihelix |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024828.01.T01 | MTR_5g017500 | 85.200 | 250 | 16 | 3 | 1 | 250 | 1 | 229 | 1.71e-146 | 409 |
MsG0580024828.01.T01 | MTR_4g117990 | 45.872 | 109 | 57 | 1 | 14 | 122 | 36 | 142 | 4.36e-27 | 107 |
MsG0580024828.01.T01 | MTR_7g081190 | 49.020 | 102 | 49 | 2 | 19 | 118 | 43 | 143 | 1.03e-21 | 93.2 |
MsG0580024828.01.T01 | MTR_1g061600 | 31.111 | 135 | 74 | 4 | 22 | 143 | 133 | 261 | 7.57e-16 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024828.01.T01 | AT3G24860 | 33.829 | 269 | 135 | 6 | 11 | 249 | 54 | 309 | 2.19e-43 | 149 |
MsG0580024828.01.T01 | AT2G44730 | 44.348 | 115 | 54 | 2 | 9 | 119 | 51 | 159 | 1.20e-22 | 95.5 |
MsG0580024828.01.T01 | AT3G54390 | 28.814 | 236 | 129 | 8 | 22 | 233 | 38 | 258 | 2.83e-15 | 74.3 |
MsG0580024828.01.T01 | AT3G10030 | 36.634 | 101 | 58 | 2 | 22 | 122 | 161 | 255 | 2.94e-15 | 75.1 |
MsG0580024828.01.T01 | AT3G54390 | 28.692 | 237 | 130 | 8 | 22 | 234 | 54 | 275 | 3.44e-15 | 73.9 |
MsG0580024828.01.T01 | AT3G10030 | 36.634 | 101 | 58 | 2 | 22 | 122 | 161 | 255 | 3.44e-15 | 75.1 |
MsG0580024828.01.T01 | AT3G58630 | 31.624 | 117 | 67 | 2 | 22 | 128 | 26 | 139 | 3.87e-14 | 71.2 |
MsG0580024828.01.T01 | AT3G58630 | 31.624 | 117 | 67 | 2 | 22 | 128 | 26 | 139 | 3.97e-14 | 71.2 |
Find 80 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCTTGTTACTGTTGGTTTC+TGG | 0.153076 | 5:-10429861 | None:intergenic |
TGATGAGGTTAATGGTTTCT+TGG | 0.248878 | 5:-10429450 | None:intergenic |
GTAGGCTCTGATGAGGTTAA+TGG | 0.265129 | 5:-10429458 | None:intergenic |
GATTCTATTGGAAAGGCATT+TGG | 0.282980 | 5:+10430099 | MsG0580024828.01.T01:CDS |
TGGAGGATTGTTGATTCTAT+TGG | 0.285128 | 5:+10430087 | MsG0580024828.01.T01:CDS |
ACGACATTGAAGAGCGGTTT+TGG | 0.311108 | 5:-10429587 | None:intergenic |
TCTTGGTGGGTCCATGGAAT+GGG | 0.347722 | 5:-10429433 | None:intergenic |
TTCTTGGTGGGTCCATGGAA+TGG | 0.347924 | 5:-10429434 | None:intergenic |
CCGTCGCTATCGTCGGAGAT+AGG | 0.363885 | 5:-10429772 | None:intergenic |
GATTAGAGATGGAGAATAAG+AGG | 0.371813 | 5:+10430040 | MsG0580024828.01.T01:CDS |
ATTCTATTGGAAAGGCATTT+GGG | 0.373738 | 5:+10430100 | MsG0580024828.01.T01:CDS |
TTTCAGATCGGTGGCGTTGA+CGG | 0.386482 | 5:-10429627 | None:intergenic |
ATGGGTTGAGGTTTCTTTGT+GGG | 0.390802 | 5:-10429415 | None:intergenic |
GAAATGGTATTCACTCAAAC+GGG | 0.393548 | 5:+10429486 | MsG0580024828.01.T01:CDS |
GCCCACTCCGCGGCAGTCAA+TGG | 0.394607 | 5:+10429509 | MsG0580024828.01.T01:CDS |
GAAAGAGGTCGGACGGAGAT+AGG | 0.403361 | 5:-10429739 | None:intergenic |
CCGCCGCTTCTTCTCGATCC+TGG | 0.407620 | 5:+10429674 | MsG0580024828.01.T01:CDS |
CCCATTGACTGCCGCGGAGT+GGG | 0.424106 | 5:-10429510 | None:intergenic |
TGCAGAGAGGATTGTAGGGT+TGG | 0.427539 | 5:+10429975 | MsG0580024828.01.T01:CDS |
ATGGTTTCTTGGTGGGTCCA+TGG | 0.435098 | 5:-10429439 | None:intergenic |
ATAGTGCTGCTAGGTCTGTT+AGG | 0.441997 | 5:+10429812 | MsG0580024828.01.T01:CDS |
GGAGGAGGAAGACGAAGAGG+AGG | 0.442580 | 5:+10429912 | MsG0580024828.01.T01:CDS |
TGGGTCCATGGAATGGGTTG+AGG | 0.452120 | 5:-10429427 | None:intergenic |
CCCACTCCGCGGCAGTCAAT+GGG | 0.457508 | 5:+10429510 | MsG0580024828.01.T01:CDS |
AACTGATGATGAAGAGGAGG+AGG | 0.459365 | 5:+10429897 | MsG0580024828.01.T01:CDS |
CGTTGTTGTCTTGTTACTGT+TGG | 0.464913 | 5:-10429868 | None:intergenic |
GGATCGAGAAGAAGCGGCGG+AGG | 0.465439 | 5:-10429671 | None:intergenic |
AGAGAGGTTTAGATTAGAGA+TGG | 0.466781 | 5:+10430029 | MsG0580024828.01.T01:CDS |
TTGAGGTTTCTTTGTGGGAA+GGG | 0.468718 | 5:-10429410 | None:intergenic |
TCAGAGCCTACCAAGAGAAA+TGG | 0.468909 | 5:+10429470 | MsG0580024828.01.T01:CDS |
TCCCATTGACTGCCGCGGAG+TGG | 0.479922 | 5:-10429511 | None:intergenic |
AGAAATGGTATTCACTCAAA+CGG | 0.486979 | 5:+10429485 | MsG0580024828.01.T01:CDS |
GTATGATACTTGAATCTCAA+TGG | 0.493726 | 5:+10430067 | MsG0580024828.01.T01:CDS |
GAGGAGGAAGACGAAGAGGA+GGG | 0.496326 | 5:+10429913 | MsG0580024828.01.T01:CDS |
GAGGTTAATGGTTTCTTGGT+GGG | 0.497980 | 5:-10429446 | None:intergenic |
CGTCGCTATCGTCGGAGATA+GGG | 0.505081 | 5:-10429771 | None:intergenic |
GGAAGGGAAAGAGTGAGTTC+TGG | 0.514086 | 5:-10429394 | None:intergenic |
TGAATACCATTTCTCTTGGT+AGG | 0.515604 | 5:-10429476 | None:intergenic |
TGAGTGAATACCATTTCTCT+TGG | 0.519977 | 5:-10429480 | None:intergenic |
GATTGTTGATTCTATTGGAA+AGG | 0.528242 | 5:+10430092 | MsG0580024828.01.T01:CDS |
AGACGAAGAGGAGGGAGTGA+TGG | 0.530323 | 5:+10429921 | MsG0580024828.01.T01:CDS |
TGAGGTTAATGGTTTCTTGG+TGG | 0.535347 | 5:-10429447 | None:intergenic |
TCTTCAATGTCGTCATAAGA+TGG | 0.539576 | 5:+10429597 | MsG0580024828.01.T01:CDS |
AATGGGTTGAGGTTTCTTTG+TGG | 0.544865 | 5:-10429416 | None:intergenic |
AGAAACCTCAACCCATTCCA+TGG | 0.546082 | 5:+10429422 | MsG0580024828.01.T01:CDS |
TCTCTTGGTAGGCTCTGATG+AGG | 0.553443 | 5:-10429465 | None:intergenic |
TAAGAAGATGGAGATGATGA+AGG | 0.556347 | 5:+10430002 | MsG0580024828.01.T01:CDS |
AGAGGAGGAGGAAGACGAAG+AGG | 0.557060 | 5:+10429909 | MsG0580024828.01.T01:CDS |
CGGCAGTCAATGGGAAGAAG+TGG | 0.558439 | 5:+10429519 | MsG0580024828.01.T01:CDS |
ATAGGGTGCTTCTGAGAAAG+AGG | 0.564002 | 5:-10429754 | None:intergenic |
GTTGAGGTTTCTTTGTGGGA+AGG | 0.565690 | 5:-10429411 | None:intergenic |
GGTCGGACGGAGATAGGTAA+AGG | 0.569635 | 5:-10429733 | None:intergenic |
AGGGTTGGAAAATAAGAAGA+TGG | 0.571203 | 5:+10429990 | MsG0580024828.01.T01:CDS |
CTTCTTCCCATTGACTGCCG+CGG | 0.577676 | 5:-10429516 | None:intergenic |
AGAAGCGGCGGAGGAAGTAG+CGG | 0.578291 | 5:-10429662 | None:intergenic |
CTGCTAGGTCTGTTAGGTCA+AGG | 0.578720 | 5:+10429818 | MsG0580024828.01.T01:CDS |
CCGACGATAGCGACGGTGAG+AGG | 0.582725 | 5:+10429779 | MsG0580024828.01.T01:CDS |
CCTCTCACCGTCGCTATCGT+CGG | 0.588877 | 5:-10429779 | None:intergenic |
CGGAGGAAGTAGCGGTGAGG+CGG | 0.592434 | 5:-10429654 | None:intergenic |
CGACGATAGCGACGGTGAGA+GGG | 0.604292 | 5:+10429780 | MsG0580024828.01.T01:CDS |
AGTGAGTTCTGGTGAAGCGG+TGG | 0.606604 | 5:-10429383 | None:intergenic |
CATGAGACGAAAATACTGCC+AGG | 0.607104 | 5:-10429692 | None:intergenic |
AAGAGTGAGTTCTGGTGAAG+CGG | 0.610541 | 5:-10429386 | None:intergenic |
CTTCTGAGAAAGAGGTCGGA+CGG | 0.613702 | 5:-10429746 | None:intergenic |
CTGCCAGGATCGAGAAGAAG+CGG | 0.618066 | 5:-10429677 | None:intergenic |
GGTGCTTCTGAGAAAGAGGT+CGG | 0.636676 | 5:-10429750 | None:intergenic |
AGATGATGAAGGAAACAGAG+AGG | 0.638850 | 5:+10430013 | MsG0580024828.01.T01:CDS |
CTCAAACGGGGCCCACTCCG+CGG | 0.643190 | 5:+10429499 | MsG0580024828.01.T01:CDS |
TGATGAAACTGATGATGAAG+AGG | 0.652723 | 5:+10429891 | MsG0580024828.01.T01:CDS |
TGATACTTGAATCTCAATGG+AGG | 0.662965 | 5:+10430070 | MsG0580024828.01.T01:CDS |
CTCATGGATGATCTTGAACG+CGG | 0.669974 | 5:+10429709 | MsG0580024828.01.T01:CDS |
CCAGGATCGAGAAGAAGCGG+CGG | 0.670197 | 5:-10429674 | None:intergenic |
TGAAACTGATGATGAAGAGG+AGG | 0.676552 | 5:+10429894 | MsG0580024828.01.T01:CDS |
CTTATGACGACATTGAAGAG+CGG | 0.678566 | 5:-10429593 | None:intergenic |
CCTATCTCCGACGATAGCGA+CGG | 0.701116 | 5:+10429772 | MsG0580024828.01.T01:CDS |
GTAATCGTAGCCGCAACGAG+CGG | 0.705311 | 5:-10429554 | None:intergenic |
CGGCGGAGGAAGTAGCGGTG+AGG | 0.707049 | 5:-10429657 | None:intergenic |
GATGGCGAAGAGTTTGACAG+CGG | 0.738106 | 5:+10429939 | MsG0580024828.01.T01:CDS |
AAATGGTATTCACTCAAACG+GGG | 0.751020 | 5:+10429487 | MsG0580024828.01.T01:CDS |
GTAGTCGTAGCCGCTCGTTG+CGG | 0.770618 | 5:+10429544 | MsG0580024828.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AGAAATGGTATTCACTCAAA+CGG | + | Chr5:10429485-10429504 | MsG0580024828.01.T01:CDS | 30.0% | |
GTATGATACTTGAATCTCAA+TGG | + | Chr5:10430067-10430086 | MsG0580024828.01.T01:CDS | 30.0% | |
!! | ATTCTATTGGAAAGGCATTT+GGG | + | Chr5:10430100-10430119 | MsG0580024828.01.T01:CDS | 30.0% |
!! | GATTGTTGATTCTATTGGAA+AGG | + | Chr5:10430092-10430111 | MsG0580024828.01.T01:CDS | 30.0% |
AAATGGTATTCACTCAAACG+GGG | + | Chr5:10429487-10429506 | MsG0580024828.01.T01:CDS | 35.0% | |
AGAGAGGTTTAGATTAGAGA+TGG | + | Chr5:10430029-10430048 | MsG0580024828.01.T01:CDS | 35.0% | |
AGGGTTGGAAAATAAGAAGA+TGG | + | Chr5:10429990-10430009 | MsG0580024828.01.T01:CDS | 35.0% | |
GAAATGGTATTCACTCAAAC+GGG | + | Chr5:10429486-10429505 | MsG0580024828.01.T01:CDS | 35.0% | |
GATTAGAGATGGAGAATAAG+AGG | + | Chr5:10430040-10430059 | MsG0580024828.01.T01:CDS | 35.0% | |
TAAGAAGATGGAGATGATGA+AGG | + | Chr5:10430002-10430021 | MsG0580024828.01.T01:CDS | 35.0% | |
TCTTCAATGTCGTCATAAGA+TGG | + | Chr5:10429597-10429616 | MsG0580024828.01.T01:CDS | 35.0% | |
TGAATACCATTTCTCTTGGT+AGG | - | Chr5:10429479-10429498 | None:intergenic | 35.0% | |
TGAGTGAATACCATTTCTCT+TGG | - | Chr5:10429483-10429502 | None:intergenic | 35.0% | |
TGATACTTGAATCTCAATGG+AGG | + | Chr5:10430070-10430089 | MsG0580024828.01.T01:CDS | 35.0% | |
TGATGAGGTTAATGGTTTCT+TGG | - | Chr5:10429453-10429472 | None:intergenic | 35.0% | |
! | TGATGAAACTGATGATGAAG+AGG | + | Chr5:10429891-10429910 | MsG0580024828.01.T01:CDS | 35.0% |
!! | GATTCTATTGGAAAGGCATT+TGG | + | Chr5:10430099-10430118 | MsG0580024828.01.T01:CDS | 35.0% |
!! | TGGAGGATTGTTGATTCTAT+TGG | + | Chr5:10430087-10430106 | MsG0580024828.01.T01:CDS | 35.0% |
AGATGATGAAGGAAACAGAG+AGG | + | Chr5:10430013-10430032 | MsG0580024828.01.T01:CDS | 40.0% | |
CTTATGACGACATTGAAGAG+CGG | - | Chr5:10429596-10429615 | None:intergenic | 40.0% | |
GAGGTTAATGGTTTCTTGGT+GGG | - | Chr5:10429449-10429468 | None:intergenic | 40.0% | |
TGAGGTTAATGGTTTCTTGG+TGG | - | Chr5:10429450-10429469 | None:intergenic | 40.0% | |
TTGAGGTTTCTTTGTGGGAA+GGG | - | Chr5:10429413-10429432 | None:intergenic | 40.0% | |
! | AGTTGAGAAGTTTTGCAGAG+AGG | + | Chr5:10429962-10429981 | MsG0580024828.01.T01:CDS | 40.0% |
! | AGTTTTGCAGAGAGGATTGT+AGG | + | Chr5:10429970-10429989 | MsG0580024828.01.T01:CDS | 40.0% |
! | ATGGGTTGAGGTTTCTTTGT+GGG | - | Chr5:10429418-10429437 | None:intergenic | 40.0% |
! | CGTTGTTGTCTTGTTACTGT+TGG | - | Chr5:10429871-10429890 | None:intergenic | 40.0% |
! | GTTTTGCAGAGAGGATTGTA+GGG | + | Chr5:10429971-10429990 | MsG0580024828.01.T01:CDS | 40.0% |
! | TGAAAAAGCATAGTGCTGCT+AGG | + | Chr5:10429803-10429822 | MsG0580024828.01.T01:CDS | 40.0% |
! | TGAAACTGATGATGAAGAGG+AGG | + | Chr5:10429894-10429913 | MsG0580024828.01.T01:CDS | 40.0% |
!! | AATGGGTTGAGGTTTCTTTG+TGG | - | Chr5:10429419-10429438 | None:intergenic | 40.0% |
!! | GTCTTGTTACTGTTGGTTTC+TGG | - | Chr5:10429864-10429883 | None:intergenic | 40.0% |
!!! | ATTGAAGAGCGGTTTTGGAA+GGG | - | Chr5:10429585-10429604 | None:intergenic | 40.0% |
AGAAACCTCAACCCATTCCA+TGG | + | Chr5:10429422-10429441 | MsG0580024828.01.T01:CDS | 45.0% | |
CATGAGACGAAAATACTGCC+AGG | - | Chr5:10429695-10429714 | None:intergenic | 45.0% | |
CTCATGGATGATCTTGAACG+CGG | + | Chr5:10429709-10429728 | MsG0580024828.01.T01:CDS | 45.0% | |
GTTGAGGTTTCTTTGTGGGA+AGG | - | Chr5:10429414-10429433 | None:intergenic | 45.0% | |
TCAGAGCCTACCAAGAGAAA+TGG | + | Chr5:10429470-10429489 | MsG0580024828.01.T01:CDS | 45.0% | |
! | AACTGATGATGAAGAGGAGG+AGG | + | Chr5:10429897-10429916 | MsG0580024828.01.T01:CDS | 45.0% |
! | AAGAGTGAGTTCTGGTGAAG+CGG | - | Chr5:10429389-10429408 | None:intergenic | 45.0% |
! | ACGACATTGAAGAGCGGTTT+TGG | - | Chr5:10429590-10429609 | None:intergenic | 45.0% |
! | ATAGGGTGCTTCTGAGAAAG+AGG | - | Chr5:10429757-10429776 | None:intergenic | 45.0% |
! | ATAGTGCTGCTAGGTCTGTT+AGG | + | Chr5:10429812-10429831 | MsG0580024828.01.T01:CDS | 45.0% |
! | CTGGCAGTATTTTCGTCTCA+TGG | + | Chr5:10429693-10429712 | MsG0580024828.01.T01:CDS | 45.0% |
! | GTAGGCTCTGATGAGGTTAA+TGG | - | Chr5:10429461-10429480 | None:intergenic | 45.0% |
!! | TGAGGCGGTGTTTTTCAGAT+CGG | - | Chr5:10429642-10429661 | None:intergenic | 45.0% |
!!! | CATTGAAGAGCGGTTTTGGA+AGG | - | Chr5:10429586-10429605 | None:intergenic | 45.0% |
CTGCTAGGTCTGTTAGGTCA+AGG | + | Chr5:10429818-10429837 | MsG0580024828.01.T01:CDS | 50.0% | |
GATGGCGAAGAGTTTGACAG+CGG | + | Chr5:10429939-10429958 | MsG0580024828.01.T01:CDS | 50.0% | |
GGAAGGGAAAGAGTGAGTTC+TGG | - | Chr5:10429397-10429416 | None:intergenic | 50.0% | |
TGCAGAGAGGATTGTAGGGT+TGG | + | Chr5:10429975-10429994 | MsG0580024828.01.T01:CDS | 50.0% | |
! | ATGGTTTCTTGGTGGGTCCA+TGG | - | Chr5:10429442-10429461 | None:intergenic | 50.0% |
! | CTTCTGAGAAAGAGGTCGGA+CGG | - | Chr5:10429749-10429768 | None:intergenic | 50.0% |
! | GGTGCTTCTGAGAAAGAGGT+CGG | - | Chr5:10429753-10429772 | None:intergenic | 50.0% |
! | TCTCTTGGTAGGCTCTGATG+AGG | - | Chr5:10429468-10429487 | None:intergenic | 50.0% |
! | TCTTGGTGGGTCCATGGAAT+GGG | - | Chr5:10429436-10429455 | None:intergenic | 50.0% |
! | TTCTTGGTGGGTCCATGGAA+TGG | - | Chr5:10429437-10429456 | None:intergenic | 50.0% |
! | TTTCAGATCGGTGGCGTTGA+CGG | - | Chr5:10429630-10429649 | None:intergenic | 50.0% |
AGACGAAGAGGAGGGAGTGA+TGG | + | Chr5:10429921-10429940 | MsG0580024828.01.T01:CDS | 55.0% | |
AGAGGAGGAGGAAGACGAAG+AGG | + | Chr5:10429909-10429928 | MsG0580024828.01.T01:CDS | 55.0% | |
CCTATCTCCGACGATAGCGA+CGG | + | Chr5:10429772-10429791 | MsG0580024828.01.T01:CDS | 55.0% | |
CGGCAGTCAATGGGAAGAAG+TGG | + | Chr5:10429519-10429538 | MsG0580024828.01.T01:CDS | 55.0% | |
CGTCGCTATCGTCGGAGATA+GGG | - | Chr5:10429774-10429793 | None:intergenic | 55.0% | |
CTGCCAGGATCGAGAAGAAG+CGG | - | Chr5:10429680-10429699 | None:intergenic | 55.0% | |
GAAAGAGGTCGGACGGAGAT+AGG | - | Chr5:10429742-10429761 | None:intergenic | 55.0% | |
GAGGAGGAAGACGAAGAGGA+GGG | + | Chr5:10429913-10429932 | MsG0580024828.01.T01:CDS | 55.0% | |
GGTCGGACGGAGATAGGTAA+AGG | - | Chr5:10429736-10429755 | None:intergenic | 55.0% | |
GTAATCGTAGCCGCAACGAG+CGG | - | Chr5:10429557-10429576 | None:intergenic | 55.0% | |
! | AGTGAGTTCTGGTGAAGCGG+TGG | - | Chr5:10429386-10429405 | None:intergenic | 55.0% |
! | CTTCTTCCCATTGACTGCCG+CGG | - | Chr5:10429519-10429538 | None:intergenic | 55.0% |
!! | GGCGGTGTTTTTCAGATCGG+TGG | - | Chr5:10429639-10429658 | None:intergenic | 55.0% |
!! | TGGGTCCATGGAATGGGTTG+AGG | - | Chr5:10429430-10429449 | None:intergenic | 55.0% |
!!! | GAAGAGCGGTTTTGGAAGGG+TGG | - | Chr5:10429582-10429601 | None:intergenic | 55.0% |
AGAAGCGGCGGAGGAAGTAG+CGG | - | Chr5:10429665-10429684 | None:intergenic | 60.0% | |
CCAGGATCGAGAAGAAGCGG+CGG | - | Chr5:10429677-10429696 | None:intergenic | 60.0% | |
CCGTCGCTATCGTCGGAGAT+AGG | - | Chr5:10429775-10429794 | None:intergenic | 60.0% | |
CCTCTCACCGTCGCTATCGT+CGG | - | Chr5:10429782-10429801 | None:intergenic | 60.0% | |
CGACGATAGCGACGGTGAGA+GGG | + | Chr5:10429780-10429799 | MsG0580024828.01.T01:CDS | 60.0% | |
GGAGGAGGAAGACGAAGAGG+AGG | + | Chr5:10429912-10429931 | MsG0580024828.01.T01:CDS | 60.0% | |
GTAGTCGTAGCCGCTCGTTG+CGG | + | Chr5:10429544-10429563 | MsG0580024828.01.T01:CDS | 60.0% | |
CCCACTCCGCGGCAGTCAAT+GGG | + | Chr5:10429510-10429529 | MsG0580024828.01.T01:CDS | 65.0% | |
CCGACGATAGCGACGGTGAG+AGG | + | Chr5:10429779-10429798 | MsG0580024828.01.T01:CDS | 65.0% | |
CCGCCGCTTCTTCTCGATCC+TGG | + | Chr5:10429674-10429693 | MsG0580024828.01.T01:CDS | 65.0% | |
CGGAGGAAGTAGCGGTGAGG+CGG | - | Chr5:10429657-10429676 | None:intergenic | 65.0% | |
GGATCGAGAAGAAGCGGCGG+AGG | - | Chr5:10429674-10429693 | None:intergenic | 65.0% | |
! | CCCATTGACTGCCGCGGAGT+GGG | - | Chr5:10429513-10429532 | None:intergenic | 65.0% |
! | TCCCATTGACTGCCGCGGAG+TGG | - | Chr5:10429514-10429533 | None:intergenic | 65.0% |
CGGCGGAGGAAGTAGCGGTG+AGG | - | Chr5:10429660-10429679 | None:intergenic | 70.0% | |
CTCAAACGGGGCCCACTCCG+CGG | + | Chr5:10429499-10429518 | MsG0580024828.01.T01:CDS | 70.0% | |
GCCCACTCCGCGGCAGTCAA+TGG | + | Chr5:10429509-10429528 | MsG0580024828.01.T01:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 10429379 | 10430131 | 10429379 | ID=MsG0580024828.01;Name=MsG0580024828.01 |
Chr5 | mRNA | 10429379 | 10430131 | 10429379 | ID=MsG0580024828.01.T01;Parent=MsG0580024828.01;Name=MsG0580024828.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|250 |
Chr5 | exon | 10429379 | 10430131 | 10429379 | ID=MsG0580024828.01.T01:exon:1951;Parent=MsG0580024828.01.T01 |
Chr5 | CDS | 10429379 | 10430131 | 10429379 | ID=MsG0580024828.01.T01:cds;Parent=MsG0580024828.01.T01 |
Gene Sequence |
Protein sequence |