Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025088.01.T01 | XP_003612158.1 | 96.078 | 306 | 8 | 3 | 1 | 306 | 1 | 302 | 0 | 602 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025088.01.T01 | Q8LL11 | 48.797 | 291 | 99 | 12 | 27 | 297 | 42 | 302 | 9.86E-69 | 219 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025088.01.T01 | B7UCW4 | 96.078 | 306 | 8 | 3 | 1 | 306 | 1 | 302 | 0.0 | 602 |
Gene ID | Type | Classification |
---|---|---|
MsG0580025088.01.T01 | TF | HB-WOX |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025088.01.T01 | MTR_5g021930 | 96.078 | 306 | 8 | 3 | 1 | 306 | 1 | 302 | 0.0 | 602 |
MsG0580025088.01.T01 | MTR_4g084550 | 67.164 | 67 | 21 | 1 | 28 | 94 | 60 | 125 | 2.78e-26 | 102 |
MsG0580025088.01.T01 | MTR_8g107210 | 64.000 | 75 | 26 | 1 | 20 | 94 | 84 | 157 | 3.02e-25 | 103 |
MsG0580025088.01.T01 | MTR_5g081990 | 59.459 | 74 | 26 | 2 | 32 | 102 | 33 | 105 | 3.13e-24 | 97.4 |
MsG0580025088.01.T01 | MTR_7g060630 | 67.692 | 65 | 20 | 1 | 30 | 94 | 6 | 69 | 1.03e-23 | 96.7 |
MsG0580025088.01.T01 | MTR_4g063735 | 68.254 | 63 | 19 | 1 | 32 | 94 | 25 | 86 | 2.86e-23 | 96.7 |
MsG0580025088.01.T01 | MTR_1g019130 | 55.844 | 77 | 33 | 1 | 18 | 94 | 76 | 151 | 5.26e-22 | 92.8 |
MsG0580025088.01.T01 | MTR_1g019130 | 53.571 | 84 | 29 | 2 | 11 | 94 | 78 | 151 | 5.43e-22 | 92.4 |
MsG0580025088.01.T01 | MTR_8g095580 | 78.723 | 47 | 10 | 0 | 48 | 94 | 97 | 143 | 4.84e-19 | 82.8 |
MsG0580025088.01.T01 | MTR_3g088485 | 76.596 | 47 | 11 | 0 | 48 | 94 | 95 | 141 | 7.87e-19 | 82.4 |
MsG0580025088.01.T01 | MTR_7g025010 | 48.438 | 64 | 32 | 1 | 32 | 95 | 47 | 109 | 2.61e-14 | 73.6 |
MsG0580025088.01.T01 | MTR_2g015000 | 44.928 | 69 | 37 | 1 | 26 | 94 | 49 | 116 | 8.34e-14 | 72.0 |
MsG0580025088.01.T01 | MTR_7g066060 | 87.879 | 33 | 4 | 0 | 77 | 109 | 465 | 497 | 1.12e-12 | 68.6 |
MsG0580025088.01.T01 | MTR_4g088070 | 43.548 | 62 | 34 | 1 | 32 | 93 | 29 | 89 | 2.29e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025088.01.T01 | AT2G17950 | 41.313 | 259 | 104 | 9 | 27 | 259 | 33 | 269 | 3.08e-47 | 160 |
MsG0580025088.01.T01 | AT5G59340 | 63.514 | 74 | 26 | 1 | 21 | 94 | 3 | 75 | 2.03e-25 | 102 |
MsG0580025088.01.T01 | AT3G18010 | 70.769 | 65 | 18 | 1 | 30 | 94 | 74 | 137 | 2.41e-25 | 104 |
MsG0580025088.01.T01 | AT3G11260 | 60.000 | 75 | 27 | 2 | 20 | 94 | 14 | 85 | 9.89e-24 | 95.9 |
MsG0580025088.01.T01 | AT2G28610 | 65.152 | 66 | 22 | 1 | 29 | 94 | 5 | 69 | 4.20e-23 | 95.9 |
MsG0580025088.01.T01 | AT5G05770 | 62.319 | 69 | 25 | 1 | 32 | 100 | 29 | 96 | 6.77e-23 | 92.0 |
MsG0580025088.01.T01 | AT1G46480 | 48.913 | 92 | 44 | 2 | 3 | 94 | 63 | 151 | 1.61e-22 | 92.8 |
MsG0580025088.01.T01 | AT1G46480 | 48.913 | 92 | 44 | 2 | 3 | 94 | 63 | 151 | 8.07e-22 | 92.8 |
MsG0580025088.01.T01 | AT2G01500 | 61.017 | 59 | 22 | 1 | 29 | 87 | 58 | 115 | 9.93e-19 | 84.7 |
MsG0580025088.01.T01 | AT5G45980 | 52.381 | 63 | 29 | 1 | 32 | 94 | 55 | 116 | 1.04e-14 | 73.9 |
MsG0580025088.01.T01 | AT2G33880 | 45.714 | 70 | 37 | 1 | 26 | 95 | 49 | 117 | 2.10e-14 | 73.6 |
MsG0580025088.01.T01 | AT2G33880 | 45.714 | 70 | 37 | 1 | 26 | 95 | 49 | 117 | 2.13e-14 | 73.6 |
Find 66 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATCCTAAGTGAGGGTTTA+TGG | 0.166513 | 5:+13693890 | None:intergenic |
AAAGGGAGGGTTTCAATTTC+AGG | 0.186091 | 5:+13693753 | None:intergenic |
TTCACCAAACAATGGGATTA+TGG | 0.189862 | 5:-13695018 | MsG0580025088.01.T01:CDS |
CTATTATTGCTGCTGCTAAT+TGG | 0.230551 | 5:-13694731 | MsG0580025088.01.T01:CDS |
CAAATTTAATTAGCATAATC+TGG | 0.300562 | 5:+13693570 | None:intergenic |
TTTGCATAAGCTGAAGAATA+TGG | 0.309877 | 5:+13693846 | None:intergenic |
TCTTCCATGATTTCTTCATT+TGG | 0.323131 | 5:+13693804 | None:intergenic |
CTCTGAATCTGTTCTGCACT+TGG | 0.338799 | 5:+13694906 | None:intergenic |
TATGAACAAGGACAAGAAAA+TGG | 0.342235 | 5:-13693780 | MsG0580025088.01.T01:CDS |
ATTCTTATCTGATCTGTTGT+TGG | 0.355808 | 5:+13694966 | None:intergenic |
CAGATTGGTAACTATGGATA+TGG | 0.369373 | 5:-13694478 | MsG0580025088.01.T01:CDS |
AAATCAAATTCATCTAACTA+TGG | 0.374371 | 5:-13693684 | MsG0580025088.01.T01:CDS |
TCAGCATGCATAGGGAATAA+AGG | 0.383868 | 5:+13693735 | None:intergenic |
TCACCAAACAATGGGATTAT+GGG | 0.391816 | 5:-13695017 | MsG0580025088.01.T01:CDS |
GCAATAATAGTATTGTTGTT+TGG | 0.407919 | 5:+13694744 | None:intergenic |
GTAGGCCAGATTGGTAACTA+TGG | 0.413013 | 5:-13694484 | MsG0580025088.01.T01:CDS |
TCTGCTAGGTTAAGACAGTA+TGG | 0.419676 | 5:-13694879 | MsG0580025088.01.T01:CDS |
TGTTGTTGTTCATGTTGATC+AGG | 0.421893 | 5:+13694705 | None:intergenic |
GCCTCAACTCTTACGGTTGT+AGG | 0.423475 | 5:-13693596 | MsG0580025088.01.T01:CDS |
AATTACAACATTTCATCTGC+TGG | 0.424173 | 5:-13694651 | MsG0580025088.01.T01:intron |
TGGTTCTCGTACTACTTCCT+TGG | 0.429314 | 5:-13693625 | MsG0580025088.01.T01:CDS |
ATGAAATGTTGTAATTAGAA+TGG | 0.431892 | 5:+13694658 | None:intergenic |
CAGCATGCATAGGGAATAAA+GGG | 0.436158 | 5:+13693736 | None:intergenic |
CTAGAGAAAGACAGAAGAAA+AGG | 0.441919 | 5:-13694809 | MsG0580025088.01.T01:CDS |
GTTTGGTGCTCTTTGAATGA+TGG | 0.443486 | 5:+13694761 | None:intergenic |
CTGCCCATAATCCCATTGTT+TGG | 0.443872 | 5:+13695014 | None:intergenic |
AACAACATTCACCAAACAAT+GGG | 0.452239 | 5:-13695025 | MsG0580025088.01.T01:CDS |
CATATCCATAGTTACCAATC+TGG | 0.452599 | 5:+13694479 | None:intergenic |
TTTGGTGCTCTTTGAATGAT+GGG | 0.453249 | 5:+13694762 | None:intergenic |
GAACTTAGCCTCAACTCTTA+CGG | 0.457853 | 5:-13693603 | MsG0580025088.01.T01:CDS |
AAGACCAAATGAAGAAATCA+TGG | 0.463541 | 5:-13693808 | MsG0580025088.01.T01:CDS |
ATGGTTACTGTAGGCCAGAT+TGG | 0.471455 | 5:-13694493 | MsG0580025088.01.T01:CDS |
AGTTAGATGAATTTGATTTG+AGG | 0.476215 | 5:+13693688 | None:intergenic |
TGTTGTGTCTGCTGCTGTTG+TGG | 0.480611 | 5:+13695044 | None:intergenic |
AGATCAGATAAGAATATTGA+AGG | 0.488670 | 5:-13694958 | MsG0580025088.01.T01:CDS |
TTCATGTTCTTCTGCTGAGA+TGG | 0.491391 | 5:-13694512 | MsG0580025088.01.T01:CDS |
AACCCTCACTTAGGATGGAT+TGG | 0.497436 | 5:-13693885 | MsG0580025088.01.T01:CDS |
AAGGATCTTTACTACAACAA+TGG | 0.504008 | 5:-13694939 | MsG0580025088.01.T01:CDS |
AGACAGTATGGTAAGATTGA+AGG | 0.507784 | 5:-13694867 | MsG0580025088.01.T01:CDS |
GGATGTAGCAGTAGTCAAGT+TGG | 0.507987 | 5:-13693918 | MsG0580025088.01.T01:CDS |
TAGGAGTGCACAATATCAGC+TGG | 0.529304 | 5:-13693939 | MsG0580025088.01.T01:CDS |
ATGCATGCTGAAGACATTCA+TGG | 0.531289 | 5:-13693723 | MsG0580025088.01.T01:CDS |
TGGTATCAAGCTGAAGATGC+AGG | 0.538672 | 5:-13693657 | MsG0580025088.01.T01:CDS |
CCATAAACCCTCACTTAGGA+TGG | 0.538741 | 5:-13693890 | MsG0580025088.01.T01:CDS |
GAAGATGCAGGATTCATGTA+TGG | 0.540471 | 5:-13693645 | MsG0580025088.01.T01:CDS |
TGTTGTGGTTGTTGTTGTTG+AGG | 0.541096 | 5:+13695059 | None:intergenic |
GAATGTCTTCAGCATGCATA+GGG | 0.542541 | 5:+13693727 | None:intergenic |
CAACAACATTCACCAAACAA+TGG | 0.552485 | 5:-13695026 | MsG0580025088.01.T01:CDS |
AATATGGATCAACATGATGA+TGG | 0.557603 | 5:+13693862 | None:intergenic |
AGAGTTGAGGCTAAGTTCCA+AGG | 0.568194 | 5:+13693608 | None:intergenic |
TGAATGTCTTCAGCATGCAT+AGG | 0.569037 | 5:+13693726 | None:intergenic |
TCTGCTGAGATGGTTACTGT+AGG | 0.577564 | 5:-13694502 | MsG0580025088.01.T01:CDS |
ATTCATCTAACTATGGTGGT+TGG | 0.584464 | 5:-13693677 | MsG0580025088.01.T01:CDS |
TCAAATTCATCTAACTATGG+TGG | 0.598577 | 5:-13693681 | MsG0580025088.01.T01:CDS |
AGTACCATAAACCCTCACTT+AGG | 0.599826 | 5:-13693894 | MsG0580025088.01.T01:CDS |
TGGATATGGATCTGTCCCAA+TGG | 0.601538 | 5:-13694464 | MsG0580025088.01.T01:CDS |
AGATTCAGAGAATCTCTGCT+AGG | 0.608727 | 5:-13694893 | MsG0580025088.01.T01:CDS |
ACCTACAACCGTAAGAGTTG+AGG | 0.617544 | 5:+13693595 | None:intergenic |
GGCCAATCCATCCTAAGTGA+GGG | 0.618647 | 5:+13693883 | None:intergenic |
GCAGCAGACAAAGTAGTACA+AGG | 0.645018 | 5:-13694995 | MsG0580025088.01.T01:CDS |
TGGCCAATCCATCCTAAGTG+AGG | 0.646941 | 5:+13693882 | None:intergenic |
CATGCATAGGGAATAAAGGG+AGG | 0.658861 | 5:+13693739 | None:intergenic |
ATGCATAGGGAATAAAGGGA+GGG | 0.659824 | 5:+13693740 | None:intergenic |
ATCATGGAAGAATATGAACA+AGG | 0.690834 | 5:-13693792 | MsG0580025088.01.T01:CDS |
GCAGACAAAGTAGTACAAGG+TGG | 0.749876 | 5:-13694992 | MsG0580025088.01.T01:CDS |
CATGCTGAAGACATTCATGG+TGG | 0.790217 | 5:-13693720 | MsG0580025088.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAGATATGAAAATATTAAA+GGG | + | Chr5:13694265-13694284 | None:intergenic | 10.0% |
!! | ATACACACAAAAATAAATAT+AGG | + | Chr5:13694088-13694107 | None:intergenic | 15.0% |
!! | CATAGATATGAAAATATTAA+AGG | + | Chr5:13694266-13694285 | None:intergenic | 15.0% |
!!! | ATTAAAACTCTACTTTTTTT+AGG | - | Chr5:13694585-13694604 | MsG0580025088.01.T01:intron | 15.0% |
!!! | TCTTTTATTTAATAACCAAA+AGG | - | Chr5:13694401-13694420 | MsG0580025088.01.T01:intron | 15.0% |
!!! | TTTTTAATTCTTAGTTTATG+AGG | + | Chr5:13694461-13694480 | None:intergenic | 15.0% |
!!! | TTTTTTTTCTTGTATCAAAA+AGG | + | Chr5:13694032-13694051 | None:intergenic | 15.0% |
!! | AAATCAAATTCATCTAACTA+TGG | - | Chr5:13694959-13694978 | MsG0580025088.01.T01:CDS | 20.0% |
!! | ATGAAATGTTGTAATTAGAA+TGG | + | Chr5:13693988-13694007 | None:intergenic | 20.0% |
!!! | TTCTTATTATGGAAATTTTC+TGG | + | Chr5:13694432-13694451 | None:intergenic | 20.0% |
! | AGATCAGATAAGAATATTGA+AGG | - | Chr5:13693685-13693704 | MsG0580025088.01.T01:CDS | 25.0% |
! | TTTGTGTGTATGTTTATGTA+GGG | - | Chr5:13694097-13694116 | MsG0580025088.01.T01:intron | 25.0% |
!! | AAGGCAAAAATGTCTTTTAT+TGG | - | Chr5:13693795-13693814 | MsG0580025088.01.T01:CDS | 25.0% |
!! | GCAATAATAGTATTGTTGTT+TGG | + | Chr5:13693902-13693921 | None:intergenic | 25.0% |
!! | TTTTGTGTGTATGTTTATGT+AGG | - | Chr5:13694096-13694115 | MsG0580025088.01.T01:intron | 25.0% |
!!! | AGTTAGATGAATTTGATTTG+AGG | + | Chr5:13694958-13694977 | None:intergenic | 25.0% |
!!! | ATTTTTTTCGTCTTCTTCTT+AGG | - | Chr5:13694685-13694704 | MsG0580025088.01.T01:CDS | 25.0% |
AACAACATTCACCAAACAAT+GGG | - | Chr5:13693618-13693637 | MsG0580025088.01.T01:CDS | 30.0% | |
AAGACCAAATGAAGAAATCA+TGG | - | Chr5:13694835-13694854 | MsG0580025088.01.T01:CDS | 30.0% | |
AAGGATCTTTACTACAACAA+TGG | - | Chr5:13693704-13693723 | MsG0580025088.01.T01:CDS | 30.0% | |
AATATGGATCAACATGATGA+TGG | + | Chr5:13694784-13694803 | None:intergenic | 30.0% | |
AATTACAACATTTCATCTGC+TGG | - | Chr5:13693992-13694011 | MsG0580025088.01.T01:intron | 30.0% | |
ATCATGGAAGAATATGAACA+AGG | - | Chr5:13694851-13694870 | MsG0580025088.01.T01:CDS | 30.0% | |
ATTCTTATCTGATCTGTTGT+TGG | + | Chr5:13693680-13693699 | None:intergenic | 30.0% | |
TATGAACAAGGACAAGAAAA+TGG | - | Chr5:13694863-13694882 | MsG0580025088.01.T01:CDS | 30.0% | |
TCAAATTCATCTAACTATGG+TGG | - | Chr5:13694962-13694981 | MsG0580025088.01.T01:CDS | 30.0% | |
TCTTCCATGATTTCTTCATT+TGG | + | Chr5:13694842-13694861 | None:intergenic | 30.0% | |
TGAGGTTGTTCTTCTTATTA+TGG | + | Chr5:13694443-13694462 | None:intergenic | 30.0% | |
TTTGCATAAGCTGAAGAATA+TGG | + | Chr5:13694800-13694819 | None:intergenic | 30.0% | |
! | AATTTTCTGGATTGTCCTTT+TGG | + | Chr5:13694419-13694438 | None:intergenic | 30.0% |
AGACAGTATGGTAAGATTGA+AGG | - | Chr5:13693776-13693795 | MsG0580025088.01.T01:CDS | 35.0% | |
ATTCAATCCATGATCCATCA+TGG | - | Chr5:13694327-13694346 | MsG0580025088.01.T01:intron | 35.0% | |
ATTCATCTAACTATGGTGGT+TGG | - | Chr5:13694966-13694985 | MsG0580025088.01.T01:CDS | 35.0% | |
CAACAACATTCACCAAACAA+TGG | - | Chr5:13693617-13693636 | MsG0580025088.01.T01:CDS | 35.0% | |
CATATCCATAGTTACCAATC+TGG | + | Chr5:13694167-13694186 | None:intergenic | 35.0% | |
CTAGAGAAAGACAGAAGAAA+AGG | - | Chr5:13693834-13693853 | MsG0580025088.01.T01:CDS | 35.0% | |
CTATTATTGCTGCTGCTAAT+TGG | - | Chr5:13693912-13693931 | MsG0580025088.01.T01:CDS | 35.0% | |
CTTGTGTATCAAATCTCACA+TGG | + | Chr5:13694362-13694381 | None:intergenic | 35.0% | |
GCTACATACACATTAGACAA+AGG | + | Chr5:13694297-13694316 | None:intergenic | 35.0% | |
TAGTGAAAGTGAACTCATGT+TGG | + | Chr5:13694530-13694549 | None:intergenic | 35.0% | |
TCACCAAACAATGGGATTAT+GGG | - | Chr5:13693626-13693645 | MsG0580025088.01.T01:CDS | 35.0% | |
TTCACCAAACAATGGGATTA+TGG | - | Chr5:13693625-13693644 | MsG0580025088.01.T01:CDS | 35.0% | |
! | ACCCTAAAACTCTTTTCCAT+TGG | + | Chr5:13694198-13694217 | None:intergenic | 35.0% |
! | CAGATTGGTAACTATGGATA+TGG | - | Chr5:13694165-13694184 | MsG0580025088.01.T01:intron | 35.0% |
! | CCCAATGGAAAAGAGTTTTA+GGG | - | Chr5:13694194-13694213 | MsG0580025088.01.T01:intron | 35.0% |
! | CCCTAAAACTCTTTTCCATT+GGG | + | Chr5:13694197-13694216 | None:intergenic | 35.0% |
! | TCCCAATGGAAAAGAGTTTT+AGG | - | Chr5:13694193-13694212 | MsG0580025088.01.T01:intron | 35.0% |
! | TGTTGTTGTTCATGTTGATC+AGG | + | Chr5:13693941-13693960 | None:intergenic | 35.0% |
!! | TTTGGTGCTCTTTGAATGAT+GGG | + | Chr5:13693884-13693903 | None:intergenic | 35.0% |
AAAGGGAGGGTTTCAATTTC+AGG | + | Chr5:13694893-13694912 | None:intergenic | 40.0% | |
AGATTCAGAGAATCTCTGCT+AGG | - | Chr5:13693750-13693769 | MsG0580025088.01.T01:CDS | 40.0% | |
AGTACCATAAACCCTCACTT+AGG | - | Chr5:13694749-13694768 | MsG0580025088.01.T01:CDS | 40.0% | |
ATGCATAGGGAATAAAGGGA+GGG | + | Chr5:13694906-13694925 | None:intergenic | 40.0% | |
ATGCATGCTGAAGACATTCA+TGG | - | Chr5:13694920-13694939 | MsG0580025088.01.T01:CDS | 40.0% | |
CAGCATGCATAGGGAATAAA+GGG | + | Chr5:13694910-13694929 | None:intergenic | 40.0% | |
GAACTTAGCCTCAACTCTTA+CGG | - | Chr5:13695040-13695059 | MsG0580025088.01.T01:CDS | 40.0% | |
GAAGATGCAGGATTCATGTA+TGG | - | Chr5:13694998-13695017 | MsG0580025088.01.T01:CDS | 40.0% | |
GAATGTCTTCAGCATGCATA+GGG | + | Chr5:13694919-13694938 | None:intergenic | 40.0% | |
TCAGCATGCATAGGGAATAA+AGG | + | Chr5:13694911-13694930 | None:intergenic | 40.0% | |
TCTGCTAGGTTAAGACAGTA+TGG | - | Chr5:13693764-13693783 | MsG0580025088.01.T01:CDS | 40.0% | |
TGAAAGTGAACTCATGTTGG+TGG | + | Chr5:13694527-13694546 | None:intergenic | 40.0% | |
TGAATGTCTTCAGCATGCAT+AGG | + | Chr5:13694920-13694939 | None:intergenic | 40.0% | |
TTCATGTTCTTCTGCTGAGA+TGG | - | Chr5:13694131-13694150 | MsG0580025088.01.T01:intron | 40.0% | |
! | TGTTGTGGTTGTTGTTGTTG+AGG | + | Chr5:13693587-13693606 | None:intergenic | 40.0% |
!! | GTTTGGTGCTCTTTGAATGA+TGG | + | Chr5:13693885-13693904 | None:intergenic | 40.0% |
AACCCTCACTTAGGATGGAT+TGG | - | Chr5:13694758-13694777 | MsG0580025088.01.T01:CDS | 45.0% | |
ACCTACAACCGTAAGAGTTG+AGG | + | Chr5:13695051-13695070 | None:intergenic | 45.0% | |
AGAGTTGAGGCTAAGTTCCA+AGG | + | Chr5:13695038-13695057 | None:intergenic | 45.0% | |
ATGGTTACTGTAGGCCAGAT+TGG | - | Chr5:13694150-13694169 | MsG0580025088.01.T01:intron | 45.0% | |
CATGCATAGGGAATAAAGGG+AGG | + | Chr5:13694907-13694926 | None:intergenic | 45.0% | |
CATGCTGAAGACATTCATGG+TGG | - | Chr5:13694923-13694942 | MsG0580025088.01.T01:CDS | 45.0% | |
CATGGATGCATGAACCATGA+TGG | + | Chr5:13694344-13694363 | None:intergenic | 45.0% | |
CCATAAACCCTCACTTAGGA+TGG | - | Chr5:13694753-13694772 | MsG0580025088.01.T01:CDS | 45.0% | |
CCATCCTAAGTGAGGGTTTA+TGG | + | Chr5:13694756-13694775 | None:intergenic | 45.0% | |
CTCTGAATCTGTTCTGCACT+TGG | + | Chr5:13693740-13693759 | None:intergenic | 45.0% | |
CTGCCCATAATCCCATTGTT+TGG | + | Chr5:13693632-13693651 | None:intergenic | 45.0% | |
GCAGACAAAGTAGTACAAGG+TGG | - | Chr5:13693651-13693670 | MsG0580025088.01.T01:CDS | 45.0% | |
GCAGCAGACAAAGTAGTACA+AGG | - | Chr5:13693648-13693667 | MsG0580025088.01.T01:CDS | 45.0% | |
GGATGTAGCAGTAGTCAAGT+TGG | - | Chr5:13694725-13694744 | MsG0580025088.01.T01:CDS | 45.0% | |
TCTGCTGAGATGGTTACTGT+AGG | - | Chr5:13694141-13694160 | MsG0580025088.01.T01:intron | 45.0% | |
TGGATATGGATCTGTCCCAA+TGG | - | Chr5:13694179-13694198 | MsG0580025088.01.T01:intron | 45.0% | |
TGGTATCAAGCTGAAGATGC+AGG | - | Chr5:13694986-13695005 | MsG0580025088.01.T01:CDS | 45.0% | |
TGGTTCTCGTACTACTTCCT+TGG | - | Chr5:13695018-13695037 | MsG0580025088.01.T01:CDS | 45.0% | |
! | GTAGGCCAGATTGGTAACTA+TGG | - | Chr5:13694159-13694178 | MsG0580025088.01.T01:intron | 45.0% |
! | TAGGAGTGCACAATATCAGC+TGG | - | Chr5:13694704-13694723 | MsG0580025088.01.T01:CDS | 45.0% |
!! | GCATGAACCATGATGGATCA+TGG | + | Chr5:13694337-13694356 | None:intergenic | 45.0% |
!! | AACTTAAATTAAAATTAAAA+TGG | + | Chr5:13694662-13694681 | None:intergenic | 5.0% |
GCCTCAACTCTTACGGTTGT+AGG | - | Chr5:13695047-13695066 | MsG0580025088.01.T01:CDS | 50.0% | |
GGCCAATCCATCCTAAGTGA+GGG | + | Chr5:13694763-13694782 | None:intergenic | 50.0% | |
TGGCCAATCCATCCTAAGTG+AGG | + | Chr5:13694764-13694783 | None:intergenic | 50.0% | |
TGTTGTGTCTGCTGCTGTTG+TGG | + | Chr5:13693602-13693621 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 13693575 | 13695090 | 13693575 | ID=MsG0580025088.01;Name=MsG0580025088.01 |
Chr5 | mRNA | 13693575 | 13695090 | 13693575 | ID=MsG0580025088.01.T01;Parent=MsG0580025088.01;Name=MsG0580025088.01.T01;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|306 |
Chr5 | exon | 13694652 | 13695090 | 13694652 | ID=MsG0580025088.01.T01:exon:5621;Parent=MsG0580025088.01.T01 |
Chr5 | exon | 13694450 | 13694547 | 13694450 | ID=MsG0580025088.01.T01:exon:5620;Parent=MsG0580025088.01.T01 |
Chr5 | exon | 13693575 | 13693958 | 13693575 | ID=MsG0580025088.01.T01:exon:5619;Parent=MsG0580025088.01.T01 |
Chr5 | CDS | 13694652 | 13695090 | 13694652 | ID=MsG0580025088.01.T01:cds;Parent=MsG0580025088.01.T01 |
Chr5 | CDS | 13694450 | 13694547 | 13694450 | ID=MsG0580025088.01.T01:cds;Parent=MsG0580025088.01.T01 |
Chr5 | CDS | 13693575 | 13693958 | 13693575 | ID=MsG0580025088.01.T01:cds;Parent=MsG0580025088.01.T01 |
Gene Sequence |
Protein sequence |