AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025197.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025197.01.T01 MTR_5g024070 87.709 358 16 2 1 358 1 330 0.0 626
MsG0580025197.01.T01 MTR_3g435550 37.037 135 77 2 208 341 38 165 3.73e-23 95.5
MsG0580025197.01.T01 MTR_3g091700 38.400 125 59 2 217 341 148 254 1.99e-20 89.7
MsG0580025197.01.T01 MTR_3g104830 48.276 87 40 2 226 310 393 476 2.92e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025197.01.T01 AT4G35590 46.348 356 134 10 1 340 40 354 1.12e-87 269
MsG0580025197.01.T01 AT4G35590 46.491 342 126 10 15 340 4 304 3.57e-84 258
MsG0580025197.01.T01 AT1G18790 43.333 120 62 2 220 339 123 236 1.98e-23 98.6
MsG0580025197.01.T01 AT1G74480 46.087 115 57 2 226 338 131 242 2.55e-23 98.6
MsG0580025197.01.T01 AT5G66990 42.727 110 59 2 233 341 164 270 4.41e-21 92.0
MsG0580025197.01.T01 AT5G53040 42.609 115 53 1 227 341 147 248 6.64e-21 91.3
MsG0580025197.01.T01 AT5G16100 50.000 64 32 0 220 283 346 409 2.48e-13 71.2

Find 68 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGATTACTTTATCAGATT+TGG 0.267461 5:-15108734 MsG0580025197.01.T01:CDS
AAAAGGAAGTGCAGAGAATT+TGG 0.277802 5:-15108646 MsG0580025197.01.T01:CDS
CAGTCTCATTCATGATCTTC+AGG 0.329225 5:-15108584 MsG0580025197.01.T01:intron
TTCTTTGACGCTTCTGCAAT+TGG 0.345585 5:+15108694 None:intergenic
TTTGGAATGGCCTGAAGCTT+TGG 0.353863 5:+15109268 None:intergenic
GATTTCAACAATCTAAGAAT+TGG 0.356192 5:+15110521 None:intergenic
AGAAGACGAGTCTGAGTTAC+TGG 0.356355 5:-15109077 MsG0580025197.01.T01:CDS
TTTCAGGAATCCAAAGCTTC+AGG 0.357774 5:-15109278 MsG0580025197.01.T01:intron
GAGCTCTGCAAGGGAAGAAT+TGG 0.370187 5:-15109179 MsG0580025197.01.T01:CDS
ATACCTTGTAACCAACAAAA+AGG 0.370413 5:+15110397 None:intergenic
TGGAGATCATTAAGCAGGTT+TGG 0.377748 5:+15109250 None:intergenic
GTATTCCTCGCTGGCCTCAT+AGG 0.379146 5:-15108624 MsG0580025197.01.T01:CDS
AAGGGTATAAGAATGGAGTT+TGG 0.381031 5:-15110475 MsG0580025197.01.T01:CDS
TGATGCTAATTGCTAGGTTT+AGG 0.385192 5:+15108125 None:intergenic
TCTTCCCTTGCAGAGCTCTC+TGG 0.396713 5:+15109184 None:intergenic
AGTCTTGCCTGTGCTTAATC+AGG 0.396954 5:-15109122 MsG0580025197.01.T01:CDS
CAGCACACAGAGCAGCAAAA+TGG 0.403276 5:-15109952 MsG0580025197.01.T01:intron
CATAGAGAAGAGGCCCTTCA+TGG 0.404040 5:-15108246 MsG0580025197.01.T01:CDS
CAATACAAATTGATTAAAGC+AGG 0.436782 5:+15109980 None:intergenic
TTTCTCCTCCATCACATTCA+CGG 0.441238 5:+15110606 None:intergenic
AAATTGAGACCAAGAGATTC+AGG 0.445679 5:-15108217 MsG0580025197.01.T01:CDS
CGTCAAAGAATCTAAATGTT+GGG 0.449206 5:-15108681 MsG0580025197.01.T01:CDS
AAAGATGTTGGAAAGTGAAA+AGG 0.459498 5:-15108273 MsG0580025197.01.T01:CDS
TTGGGCTTACTGTTCTCAAA+AGG 0.466425 5:-15108663 MsG0580025197.01.T01:CDS
TTGCCTTCTTATAACTGCCA+TGG 0.468291 5:+15108295 None:intergenic
AACATCTTGCCTGAATCTCT+TGG 0.476779 5:+15108208 None:intergenic
CTCAATTTGTATGTCCATGA+AGG 0.479972 5:+15108232 None:intergenic
TCAGACTCGTCTTCTTCAAA+AGG 0.484709 5:+15109085 None:intergenic
ACAGGCAAGACTATCTTTAG+TGG 0.485270 5:+15109133 None:intergenic
GAGAATTTGGTATTCCTCGC+TGG 0.487057 5:-15108633 MsG0580025197.01.T01:CDS
GCAGGAAGAGGCAAAACATC+AGG 0.497528 5:-15108339 MsG0580025197.01.T01:intron
TATAAGAAGGCAAAAGATGT+TGG 0.505266 5:-15108285 MsG0580025197.01.T01:CDS
ATCATTAAGCAGGTTTGGAA+TGG 0.506660 5:+15109255 None:intergenic
AATTGGCATATCAAAGTACT+TGG 0.507062 5:+15108711 None:intergenic
TGATTAAAGCAGGGAAACCT+TGG 0.511760 5:+15109990 None:intergenic
GCAAGACTATCTTTAGTGGT+TGG 0.512102 5:+15109137 None:intergenic
TGAATGTGATGGAGGAGAAA+AGG 0.512445 5:-15110603 MsG0580025197.01.T01:CDS
ATTGCATGTACCTGGTTGAA+TGG 0.520241 5:+15110807 None:intergenic
TCATGTGGAGATCATTAAGC+AGG 0.525296 5:+15109245 None:intergenic
ATCAGGTGATGCTAATTGCT+AGG 0.525863 5:+15108119 None:intergenic
AATCTTTGCAACATGGTCAC+TGG 0.527182 5:+15108750 None:intergenic
TTGGAATGTGAGAAAATTGA+GGG 0.529395 5:+15110420 None:intergenic
ATACAAGTTGGAACCGAAGA+AGG 0.529415 5:-15109221 MsG0580025197.01.T01:CDS
AGAGGCAAAACATCAGGAAA+GGG 0.535237 5:-15108333 MsG0580025197.01.T01:CDS
AAAGCAGGGAAACCTTGGTC+AGG 0.544103 5:+15109995 None:intergenic
GCGTCAAAGAATCTAAATGT+TGG 0.551834 5:-15108682 MsG0580025197.01.T01:CDS
GTTGGAATGTGAGAAAATTG+AGG 0.552092 5:+15110419 None:intergenic
CAGCCATGGCAGTTATAAGA+AGG 0.552518 5:-15108298 MsG0580025197.01.T01:CDS
TCTCCACATGATATACAAGT+TGG 0.555482 5:-15109233 MsG0580025197.01.T01:CDS
AAGAGGCAAAACATCAGGAA+AGG 0.561722 5:-15108334 MsG0580025197.01.T01:CDS
GTTCCAACTTGTATATCATG+TGG 0.569302 5:+15109230 None:intergenic
TTGGTCAGGCCTAAAAGCTA+AGG 0.570200 5:+15110009 None:intergenic
GAGAAGAAGAGTAATGAGCG+AGG 0.586084 5:+15110840 None:intergenic
AATACAAATTGATTAAAGCA+GGG 0.588381 5:+15109981 None:intergenic
AAAAGGAAAACATAGAGAAG+AGG 0.595516 5:-15108256 MsG0580025197.01.T01:CDS
GGAGGATAAAGATGCAGCCA+TGG 0.600209 5:-15108312 MsG0580025197.01.T01:CDS
AGTGATTTGATCTTCCTATG+AGG 0.604696 5:+15108610 None:intergenic
TTGAGATCCTGATTAAGCAC+AGG 0.605314 5:+15109115 None:intergenic
TCAATTTGTATGTCCATGAA+GGG 0.616363 5:+15108233 None:intergenic
GGCAAAACATCAGGAAAGGG+AGG 0.624378 5:-15108330 MsG0580025197.01.T01:CDS
TACACCAGAGAGCTCTGCAA+GGG 0.628005 5:-15109188 MsG0580025197.01.T01:CDS
CATGTGTACCGTGAATGTGA+TGG 0.635852 5:-15110614 MsG0580025197.01.T01:CDS
TTCAACAACACCATTCAACC+AGG 0.645034 5:-15110817 MsG0580025197.01.T01:intron
ATACACCAGAGAGCTCTGCA+AGG 0.645197 5:-15109189 MsG0580025197.01.T01:CDS
ATAAAGTAATCTTTGCAACA+TGG 0.664575 5:+15108743 None:intergenic
ATCTTCCTATGAGGCCAGCG+AGG 0.669880 5:+15108619 None:intergenic
TCTGCAAGGGAAGAATTGGA+AGG 0.677605 5:-15109175 MsG0580025197.01.T01:CDS
GTGTACCGTGAATGTGATGG+AGG 0.689782 5:-15110611 MsG0580025197.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAATAATAAATAAAAAAG+TGG + Chr5:15110426-15110445 None:intergenic 10.0%
!!! TATACACTTATTTTATTAAT+AGG - Chr5:15110051-15110070 MsG0580025197.01.T01:intron 10.0%
!! AACAATTCAAATTCAATAAA+AGG + Chr5:15108620-15108639 None:intergenic 15.0%
!! ACAATTCAAATTCAATAAAA+GGG + Chr5:15108619-15108638 None:intergenic 15.0%
!! ATTATATGATTATGTATTCT+GGG - Chr5:15108647-15108666 MsG0580025197.01.T01:CDS 15.0%
!!! TATTTTATTAATAGGAATCA+TGG - Chr5:15110059-15110078 MsG0580025197.01.T01:intron 15.0%
!! AAAGATTACTTTATCAGATT+TGG - Chr5:15110243-15110262 MsG0580025197.01.T01:intron 20.0%
!! AATACAAATTGATTAAAGCA+GGG + Chr5:15108999-15109018 None:intergenic 20.0%
!! ACATTTATATATCATTCACA+GGG + Chr5:15109073-15109092 None:intergenic 20.0%
!! GATTATATGATTATGTATTC+TGG - Chr5:15108646-15108665 MsG0580025197.01.T01:CDS 20.0%
!! TAAAATAAGTGTATAAAGCT+AGG + Chr5:15110046-15110065 None:intergenic 20.0%
!! TACATTTATATATCATTCAC+AGG + Chr5:15109074-15109093 None:intergenic 20.0%
!!! GAATATGTTTTTTGATTTCT+TGG - Chr5:15109641-15109660 MsG0580025197.01.T01:intron 20.0%
!!! TATTGATTTCTTTATGTATG+TGG - Chr5:15109258-15109277 MsG0580025197.01.T01:CDS 20.0%
!!! TTGAAAAACAGAATTTTCTA+CGG - Chr5:15110820-15110839 MsG0580025197.01.T01:CDS 20.0%
!!! TTTTTGTTGTTTTTGTTTGT+GGG - Chr5:15108283-15108302 MsG0580025197.01.T01:CDS 20.0%
!!! TTTTTTAGGAAAGAAAAAGA+GGG - Chr5:15110201-15110220 MsG0580025197.01.T01:intron 20.0%
!!! TTTTTTGTTGTTTTTGTTTG+TGG - Chr5:15108282-15108301 MsG0580025197.01.T01:CDS 20.0%
! AGTTATCTAATCTAACAAAC+AGG + Chr5:15109216-15109235 None:intergenic 25.0%
! ATAAAGTAATCTTTGCAACA+TGG + Chr5:15110237-15110256 None:intergenic 25.0%
! CAATACAAATTGATTAAAGC+AGG + Chr5:15109000-15109019 None:intergenic 25.0%
! CTAAATATTAGTTCAAGAGT+TGG + Chr5:15110521-15110540 None:intergenic 25.0%
! GACATAATTAACTCAACATT+AGG + Chr5:15110135-15110154 None:intergenic 25.0%
! GATTTCAACAATCTAAGAAT+TGG + Chr5:15108459-15108478 None:intergenic 25.0%
!! GTAAATCATAGAAGTTTTCT+TGG + Chr5:15110496-15110515 None:intergenic 25.0%
!!! ATTCTGTTTTTCAATAACTC+TGG + Chr5:15110814-15110833 None:intergenic 25.0%
!!! ATTTTTGAAGGGTATAAGAA+TGG - Chr5:15108495-15108514 MsG0580025197.01.T01:intron 25.0%
!!! CATGTTCTTCTTTAATTTTC+AGG - Chr5:15109683-15109702 MsG0580025197.01.T01:intron 25.0%
!!! GTTTTTTAGGAAAGAAAAAG+AGG - Chr5:15110200-15110219 MsG0580025197.01.T01:intron 25.0%
!!! TTTCTGAAGAGATTTTTGAA+GGG - Chr5:15108484-15108503 MsG0580025197.01.T01:intron 25.0%
!!! TTTTGTTGTTTTTGTTTGTG+GGG - Chr5:15108284-15108303 MsG0580025197.01.T01:CDS 25.0%
AAAAGGAAAACATAGAGAAG+AGG - Chr5:15110721-15110740 MsG0580025197.01.T01:intron 30.0%
AAAGATGTTGGAAAGTGAAA+AGG - Chr5:15110704-15110723 MsG0580025197.01.T01:intron 30.0%
ATACCTTGTAACCAACAAAA+AGG + Chr5:15108583-15108602 None:intergenic 30.0%
ATTAAAGAAGAACATGACAG+AGG + Chr5:15109679-15109698 None:intergenic 30.0%
ATTAGGAAGAAGTTATGCAT+TGG + Chr5:15110118-15110137 None:intergenic 30.0%
CGTCAAAGAATCTAAATGTT+GGG - Chr5:15110296-15110315 MsG0580025197.01.T01:intron 30.0%
GGAATAAAATGTTCAAAAGC+AGG + Chr5:15110012-15110031 None:intergenic 30.0%
GTACCAATGTTGTTAAATAG+CGG - Chr5:15108704-15108723 MsG0580025197.01.T01:CDS 30.0%
GTTCAAAAATCAGTTACCAA+TGG + Chr5:15109284-15109303 None:intergenic 30.0%
TATAAGAAGGCAAAAGATGT+TGG - Chr5:15110692-15110711 MsG0580025197.01.T01:intron 30.0%
TCAATTTGTATGTCCATGAA+GGG + Chr5:15110747-15110766 None:intergenic 30.0%
TTGGAATGTGAGAAAATTGA+GGG + Chr5:15108560-15108579 None:intergenic 30.0%
TTGGTGAAGTTAGAATTTGA+GGG - Chr5:15109510-15109529 MsG0580025197.01.T01:intron 30.0%
TTTGGTGAAGTTAGAATTTG+AGG - Chr5:15109509-15109528 MsG0580025197.01.T01:intron 30.0%
! AAAACAGAATTTTCTACGGT+TGG - Chr5:15110824-15110843 MsG0580025197.01.T01:CDS 30.0%
! AATTGGCATATCAAAGTACT+TGG + Chr5:15110269-15110288 None:intergenic 30.0%
! TTATGTATTCTGGGTTTGTT+TGG - Chr5:15108656-15108675 MsG0580025197.01.T01:CDS 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG + Chr5:15108851-15108870 None:intergenic 30.0%
!! GTTTCTGAAGAGATTTTTGA+AGG - Chr5:15108483-15108502 MsG0580025197.01.T01:intron 30.0%
AAATTGAGACCAAGAGATTC+AGG - Chr5:15110760-15110779 MsG0580025197.01.T01:intron 35.0%
AAGTATGTTGTGGAACAGTT+AGG + Chr5:15109490-15109509 None:intergenic 35.0%
ACTAAGTTGTTTATCCTGAC+AGG - Chr5:15108944-15108963 MsG0580025197.01.T01:intron 35.0%
AGGATGAAAATCAGACAACT+CGG + Chr5:15109417-15109436 None:intergenic 35.0%
AGTATGTTGTGGAACAGTTA+GGG + Chr5:15109489-15109508 None:intergenic 35.0%
AGTGATTTGATCTTCCTATG+AGG + Chr5:15110370-15110389 None:intergenic 35.0%
ATCATTAAGCAGGTTTGGAA+TGG + Chr5:15109725-15109744 None:intergenic 35.0%
CTAAGTTGTTTATCCTGACA+GGG - Chr5:15108945-15108964 MsG0580025197.01.T01:intron 35.0%
CTCAATTTGTATGTCCATGA+AGG + Chr5:15110748-15110767 None:intergenic 35.0%
CTCGGATTTCAAATCGTATT+TGG + Chr5:15109399-15109418 None:intergenic 35.0%
CTTGTAACCAACAAAAAGGT+TGG + Chr5:15108579-15108598 None:intergenic 35.0%
GAAATGGTGCAGTAAATGTT+TGG - Chr5:15109323-15109342 MsG0580025197.01.T01:intron 35.0%
GAACAACGTGATAATTGACT+GGG + Chr5:15109990-15110009 None:intergenic 35.0%
GAGATGTTGCAATGTGTATA+AGG + Chr5:15110617-15110636 None:intergenic 35.0%
GAGTTCACTTGAAGATTGTT+AGG + Chr5:15110595-15110614 None:intergenic 35.0%
GATTCCTTACAGTTACGAAA+TGG - Chr5:15109307-15109326 MsG0580025197.01.T01:intron 35.0%
GCGTCAAAGAATCTAAATGT+TGG - Chr5:15110295-15110314 MsG0580025197.01.T01:intron 35.0%
GTTCCAACTTGTATATCATG+TGG + Chr5:15109750-15109769 None:intergenic 35.0%
GTTGGAATGTGAGAAAATTG+AGG + Chr5:15108561-15108580 None:intergenic 35.0%
TAAAGTCCCTACACAAGTAA+CGG - Chr5:15109121-15109140 MsG0580025197.01.T01:CDS 35.0%
TAGCCGCTATTTAACAACAT+TGG + Chr5:15108710-15108729 None:intergenic 35.0%
TCTCCACATGATATACAAGT+TGG - Chr5:15109744-15109763 MsG0580025197.01.T01:intron 35.0%
TTCTTTATGTATGTGGCCAT+TGG - Chr5:15109265-15109284 MsG0580025197.01.T01:CDS 35.0%
TTGATAAAGTGAGTGTTTGC+AGG - Chr5:15110178-15110197 MsG0580025197.01.T01:intron 35.0%
TTGTTAAATAGCGGCTATAG+CGG - Chr5:15108713-15108732 MsG0580025197.01.T01:CDS 35.0%
TTTCGTAACTGTAAGGAATC+CGG + Chr5:15109307-15109326 None:intergenic 35.0%
! AAAAGGAAGTGCAGAGAATT+TGG - Chr5:15110331-15110350 MsG0580025197.01.T01:intron 35.0%
! AAGGGTATAAGAATGGAGTT+TGG - Chr5:15108502-15108521 MsG0580025197.01.T01:intron 35.0%
! ACTGTTCCACAACATACTTT+TGG - Chr5:15109491-15109510 MsG0580025197.01.T01:intron 35.0%
! ACTTCACCAAAAGTATGTTG+TGG + Chr5:15109500-15109519 None:intergenic 35.0%
! GTATCTTTTCGTTCCTTCTT+CGG + Chr5:15109772-15109791 None:intergenic 35.0%
! TCACATTCCAACCTTTTTGT+TGG - Chr5:15108569-15108588 MsG0580025197.01.T01:intron 35.0%
!! ACAGATTTTGAAAGTTCAGC+AGG - Chr5:15109931-15109950 MsG0580025197.01.T01:intron 35.0%
!! CAACCTTTTTGTTGGTTACA+AGG - Chr5:15108577-15108596 MsG0580025197.01.T01:intron 35.0%
!! GAGTTTGTGTTTTCTGAGAA+TGG - Chr5:15108408-15108427 MsG0580025197.01.T01:intron 35.0%
!! TGGTAACTGATTTTTGAACC+CGG - Chr5:15109285-15109304 MsG0580025197.01.T01:intron 35.0%
!!! GTGGGGTGTTTTTTGTTTTT+GGG - Chr5:15108301-15108320 MsG0580025197.01.T01:CDS 35.0%
!!! TGAGTGTTTGCAGGTTTTTT+AGG - Chr5:15110187-15110206 MsG0580025197.01.T01:intron 35.0%
!!! TGGGGTGTTTTTTGTTTTTG+GGG - Chr5:15108302-15108321 MsG0580025197.01.T01:CDS 35.0%
!!! TGTGGGGTGTTTTTTGTTTT+TGG - Chr5:15108300-15108319 MsG0580025197.01.T01:CDS 35.0%
AACATCTTGCCTGAATCTCT+TGG + Chr5:15110772-15110791 None:intergenic 40.0%
AAGAGGCAAAACATCAGGAA+AGG - Chr5:15110643-15110662 MsG0580025197.01.T01:intron 40.0%
AATCTTTGCAACATGGTCAC+TGG + Chr5:15110230-15110249 None:intergenic 40.0%
ACAGGCAAGACTATCTTTAG+TGG + Chr5:15109847-15109866 None:intergenic 40.0%
AGAACATGACAGAGGAAGTT+AGG + Chr5:15109671-15109690 None:intergenic 40.0%
AGAGGCAAAACATCAGGAAA+GGG - Chr5:15110644-15110663 MsG0580025197.01.T01:intron 40.0%
AGCAGGTTTGAAAGTTTACC+AGG - Chr5:15109948-15109967 MsG0580025197.01.T01:intron 40.0%
ATTGCATGTACCTGGTTGAA+TGG + Chr5:15108173-15108192 None:intergenic 40.0%
CAGTCTCATTCATGATCTTC+AGG - Chr5:15110393-15110412 MsG0580025197.01.T01:intron 40.0%
GAAGTTAGAATTTGAGGGCA+TGG - Chr5:15109515-15109534 MsG0580025197.01.T01:intron 40.0%
GCAAGACTATCTTTAGTGGT+TGG + Chr5:15109843-15109862 None:intergenic 40.0%
GGAACAACGTGATAATTGAC+TGG + Chr5:15109991-15110010 None:intergenic 40.0%
GGTGTGTACTGTGTACAAAT+TGG - Chr5:15109046-15109065 MsG0580025197.01.T01:intron 40.0%
GTGCAGTAAATGTTTGGCAT+TGG - Chr5:15109329-15109348 MsG0580025197.01.T01:intron 40.0%
TAAAGCTAGGACTGAGTTGT+TGG + Chr5:15110033-15110052 None:intergenic 40.0%
TCAGACTCGTCTTCTTCAAA+AGG + Chr5:15109895-15109914 None:intergenic 40.0%
TCATCCTACAGTTGCAATTG+CGG - Chr5:15109430-15109449 MsG0580025197.01.T01:intron 40.0%
TCATGTGGAGATCATTAAGC+AGG + Chr5:15109735-15109754 None:intergenic 40.0%
TGATTAAAGCAGGGAAACCT+TGG + Chr5:15108990-15109009 None:intergenic 40.0%
TGCACCATTTCGTAACTGTA+AGG + Chr5:15109314-15109333 None:intergenic 40.0%
TGGAGATCATTAAGCAGGTT+TGG + Chr5:15109730-15109749 None:intergenic 40.0%
TTCAACAACACCATTCAACC+AGG - Chr5:15108160-15108179 MsG0580025197.01.T01:CDS 40.0%
TTCGTAACTGTAAGGAATCC+GGG + Chr5:15109306-15109325 None:intergenic 40.0%
TTCTTTGACGCTTCTGCAAT+TGG + Chr5:15110286-15110305 None:intergenic 40.0%
TTGAGATCCTGATTAAGCAC+AGG + Chr5:15109865-15109884 None:intergenic 40.0%
TTGCCTTCTTATAACTGCCA+TGG + Chr5:15110685-15110704 None:intergenic 40.0%
TTGGGCTTACTGTTCTCAAA+AGG - Chr5:15110314-15110333 MsG0580025197.01.T01:intron 40.0%
TTGTGGAACAGTTAGGGAAA+TGG + Chr5:15109483-15109502 None:intergenic 40.0%
TTTCAGGAATCCAAAGCTTC+AGG - Chr5:15109699-15109718 MsG0580025197.01.T01:intron 40.0%
TTTCTCCTCCATCACATTCA+CGG + Chr5:15108374-15108393 None:intergenic 40.0%
! ATACAAGTTGGAACCGAAGA+AGG - Chr5:15109756-15109775 MsG0580025197.01.T01:intron 40.0%
! GGAGCATTTGAATCTAAACC+TGG + Chr5:15109969-15109988 None:intergenic 40.0%
! TGAATGTGATGGAGGAGAAA+AGG - Chr5:15108374-15108393 MsG0580025197.01.T01:intron 40.0%
!! GGCAAGATGTTTTCAAGAGA+AGG - Chr5:15110781-15110800 MsG0580025197.01.T01:intron 40.0%
!!! GGGGTGTTTTTTGTTTTTGG+GGG - Chr5:15108303-15108322 MsG0580025197.01.T01:CDS 40.0%
!!! GGGTGTTTTTTGTTTTTGGG+GGG - Chr5:15108304-15108323 MsG0580025197.01.T01:CDS 40.0%
ACACATTGCAACATCTCTGC+AGG - Chr5:15110620-15110639 MsG0580025197.01.T01:CDS 45.0%
AGAAGACGAGTCTGAGTTAC+TGG - Chr5:15109900-15109919 MsG0580025197.01.T01:intron 45.0%
AGTCTTGCCTGTGCTTAATC+AGG - Chr5:15109855-15109874 MsG0580025197.01.T01:intron 45.0%
CAGCCATGGCAGTTATAAGA+AGG - Chr5:15110679-15110698 MsG0580025197.01.T01:intron 45.0%
CATGTGTACCGTGAATGTGA+TGG - Chr5:15108363-15108382 MsG0580025197.01.T01:intron 45.0%
GAGAAGAAGAGTAATGAGCG+AGG + Chr5:15108140-15108159 None:intergenic 45.0%
GAGAATTTGGTATTCCTCGC+TGG - Chr5:15110344-15110363 MsG0580025197.01.T01:intron 45.0%
GATTCGCCGTTACTTGTGTA+GGG + Chr5:15109130-15109149 None:intergenic 45.0%
GGTATTGCATTGCATGTACC+TGG + Chr5:15108181-15108200 None:intergenic 45.0%
TCTGCAAGGGAAGAATTGGA+AGG - Chr5:15109802-15109821 MsG0580025197.01.T01:intron 45.0%
TGATTCGCCGTTACTTGTGT+AGG + Chr5:15109131-15109150 None:intergenic 45.0%
TTGGTCAGGCCTAAAAGCTA+AGG + Chr5:15108971-15108990 None:intergenic 45.0%
! TGCTGCAAATGTTGACTGCA+GGG - Chr5:15109454-15109473 MsG0580025197.01.T01:intron 45.0%
! TTGAGGGCATGGTTCAACAA+TGG - Chr5:15109526-15109545 MsG0580025197.01.T01:intron 45.0%
! TTTGGAATGGCCTGAAGCTT+TGG + Chr5:15109712-15109731 None:intergenic 45.0%
!! TTAGCTTTTAGGCCTGACCA+AGG - Chr5:15108970-15108989 MsG0580025197.01.T01:intron 45.0%
!! AAAATTGAAAAAATAAAAAA+TGG + Chr5:15108203-15108222 None:intergenic 5.0%
!! AAATTGAAAAAATAAAAAAT+GGG + Chr5:15108202-15108221 None:intergenic 5.0%
!!! AAAATTTGATTTTTTTTTAA+TGG - Chr5:15108239-15108258 MsG0580025197.01.T01:CDS 5.0%
!!! AAATTTGATTTTTTTTTAAT+GGG - Chr5:15108240-15108259 MsG0580025197.01.T01:CDS 5.0%
AAAGCAGGGAAACCTTGGTC+AGG + Chr5:15108985-15109004 None:intergenic 50.0%
ATACACCAGAGAGCTCTGCA+AGG - Chr5:15109788-15109807 MsG0580025197.01.T01:intron 50.0%
CAGCACACAGAGCAGCAAAA+TGG - Chr5:15109025-15109044 MsG0580025197.01.T01:intron 50.0%
CATAGAGAAGAGGCCCTTCA+TGG - Chr5:15110731-15110750 MsG0580025197.01.T01:intron 50.0%
CTAAAAGCTAAGGCCCTGTC+AGG + Chr5:15108961-15108980 None:intergenic 50.0%
GAGCTCTGCAAGGGAAGAAT+TGG - Chr5:15109798-15109817 MsG0580025197.01.T01:intron 50.0%
GCAGGAAGAGGCAAAACATC+AGG - Chr5:15110638-15110657 MsG0580025197.01.T01:intron 50.0%
GCTATGGCAGTGTTACATGG+CGG - Chr5:15108737-15108756 MsG0580025197.01.T01:CDS 50.0%
GGAGGATAAAGATGCAGCCA+TGG - Chr5:15110665-15110684 MsG0580025197.01.T01:intron 50.0%
GGCAAAACATCAGGAAAGGG+AGG - Chr5:15110647-15110666 MsG0580025197.01.T01:intron 50.0%
GGGCATGGTTCAACAATGGA+TGG - Chr5:15109530-15109549 MsG0580025197.01.T01:intron 50.0%
GTGTACCGTGAATGTGATGG+AGG - Chr5:15108366-15108385 MsG0580025197.01.T01:intron 50.0%
TACACCAGAGAGCTCTGCAA+GGG - Chr5:15109789-15109808 MsG0580025197.01.T01:intron 50.0%
TGCAACATCTCTGCAGGAAG+AGG - Chr5:15110626-15110645 MsG0580025197.01.T01:CDS 50.0%
! CTGCTGCAAATGTTGACTGC+AGG - Chr5:15109453-15109472 MsG0580025197.01.T01:intron 50.0%
!! CTGACAGGGCCTTAGCTTTT+AGG - Chr5:15108959-15108978 MsG0580025197.01.T01:intron 50.0%
ATCTTCCTATGAGGCCAGCG+AGG + Chr5:15110361-15110380 None:intergenic 55.0%
GCAGCCGCAATTGCAACTGT+AGG + Chr5:15109437-15109456 None:intergenic 55.0%
GGCGCTATGGCAGTGTTACA+TGG - Chr5:15108734-15108753 MsG0580025197.01.T01:CDS 55.0%
TCTTCCCTTGCAGAGCTCTC+TGG + Chr5:15109796-15109815 None:intergenic 55.0%
! GTATTCCTCGCTGGCCTCAT+AGG - Chr5:15110353-15110372 MsG0580025197.01.T01:intron 55.0%
TAGCGGCTATAGCGGCGCTA+TGG - Chr5:15108721-15108740 MsG0580025197.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 15108130 15110869 15108130 ID=MsG0580025197.01;Name=MsG0580025197.01
Chr5 mRNA 15108130 15110869 15108130 ID=MsG0580025197.01.T01;Parent=MsG0580025197.01;Name=MsG0580025197.01.T01;_AED=0.12;_eAED=0.13;_QI=0|0|0|0.83|0.8|0.66|6|0|358
Chr5 exon 15110818 15110869 15110818 ID=MsG0580025197.01.T01:exon:6177;Parent=MsG0580025197.01.T01
Chr5 exon 15110401 15110653 15110401 ID=MsG0580025197.01.T01:exon:6176;Parent=MsG0580025197.01.T01
Chr5 exon 15109953 15110033 15109953 ID=MsG0580025197.01.T01:exon:6175;Parent=MsG0580025197.01.T01
Chr5 exon 15109047 15109294 15109047 ID=MsG0580025197.01.T01:exon:6174;Parent=MsG0580025197.01.T01
Chr5 exon 15108585 15108799 15108585 ID=MsG0580025197.01.T01:exon:6173;Parent=MsG0580025197.01.T01
Chr5 exon 15108130 15108357 15108130 ID=MsG0580025197.01.T01:exon:6172;Parent=MsG0580025197.01.T01
Chr5 CDS 15110818 15110869 15110818 ID=MsG0580025197.01.T01:cds;Parent=MsG0580025197.01.T01
Chr5 CDS 15110401 15110653 15110401 ID=MsG0580025197.01.T01:cds;Parent=MsG0580025197.01.T01
Chr5 CDS 15109953 15110033 15109953 ID=MsG0580025197.01.T01:cds;Parent=MsG0580025197.01.T01
Chr5 CDS 15109047 15109294 15109047 ID=MsG0580025197.01.T01:cds;Parent=MsG0580025197.01.T01
Chr5 CDS 15108585 15108799 15108585 ID=MsG0580025197.01.T01:cds;Parent=MsG0580025197.01.T01
Chr5 CDS 15108130 15108357 15108130 ID=MsG0580025197.01.T01:cds;Parent=MsG0580025197.01.T01
Gene Sequence

>MsG0580025197.01.T01

ATGGATTCCTCGCTCATTACTCTTCTTCTCTTCAACAACACCATTCAACCAGAGTTGATGAGAAGCGTGCATGTGTACCGTGAATGTGATGGAGGAGAAAAGGAAGTTGAAAGAGAGTTTGTGTTTTCTGAGAATGGTTCTTATGTTGAAATGAAAGCTACTCCAATTCTTAGATTGTTGAAATCTTTTGTTTCTGAAGAGATTTTTGAAGGGTATAAGAATGGAGTTTGGCTTTGTGTTTTTGCTTTTCATGCTTGTAATGTCCCTCAATTTTCTCACATTCCAACCTTTTTGTTGGTTACAAGGGCCTTAGCTTTTAGGCCTGACCAAGGTTTCCCTGCTTTAATCAATTTGTATTGTAAAACAGCACACAGAGCAGCAAAATGGAATCCAAAGCTTCAGGCCATTCCAAACCTGCTTAATGATCTCCACATGATATACAAGTTGGAACCGAAGAAGGAACGAAAAGATACACCAGAGAGCTCTGCAAGGGAAGAATTGGAAGGAAACAACAATGATTTCCAACCACTAAAGATAGTCTTGCCTGTGCTTAATCAGGATCTCAATTGTCTTCCTTTTGAAGAAGACGAGTCTGAGTTACTGGATGATGAGACAGATTTTGAAAGTTCAGCAGGTTTTTTAGGAAAGAAAAAGAGGGCAGCCAGTGACCATGTTGCAAAGATTACTTTATCAGATTTGGCCAAGTACTTTGATATGCCAATTGCAGAAGCGTCAAAGAATCTAAATGTTGGGCTTACTGTTCTCAAAAGGAAGTGCAGAGAATTTGGTATTCCTCGCTGGCCTCATAGGAAGATCAAATCACTCGACAGTCTCATTCATGATCTTCAGGAAGAGGCAAAACATCAGGAAAGGGAGGATAAAGATGCAGCCATGGCAGTTATAAGAAGGCAAAAGATGTTGGAAAGTGAAAAGGAAAACATAGAGAAGAGGCCCTTCATGGACATACAAATTGAGACCAAGAGATTCAGGCAAGATGTTTTCAAGAGAAGGCACAGAGCCAGAGTTATTGAAAAACAGAATTTTCTACGGTTGGAAGCACCTAAACCTAGCAATTAG
Protein sequence

>MsG0580025197.01.T01

MDSSLITLLLFNNTIQPELMRSVHVYRECDGGEKEVEREFVFSENGSYVEMKATPILRLLKSFVSEEIFEGYKNGVWLCVFAFHACNVPQFSHIPTFLLVTRALAFRPDQGFPALINLYCKTAHRAAKWNPKLQAIPNLLNDLHMIYKLEPKKERKDTPESSAREELEGNNNDFQPLKIVLPVLNQDLNCLPFEEDESELLDDETDFESSAGFLGKKKRAASDHVAKITLSDLAKYFDMPIAEASKNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKHQEREDKDAAMAVIRRQKMLESEKENIEKRPFMDIQIETKRFRQDVFKRRHRARVIEKQNFLRLEAPKPSN*