Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025220.01.T01 | XP_003612379.1 | 93.692 | 428 | 27 | 0 | 1 | 428 | 1 | 428 | 0 | 832 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025220.01.T01 | F4IXE7 | 31.871 | 433 | 261 | 7 | 3 | 425 | 621 | 1029 | 3.93E-63 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025220.01.T01 | G7K198 | 93.692 | 428 | 27 | 0 | 1 | 428 | 1 | 428 | 0.0 | 832 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580025220.01.T01 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025220.01.T01 | MTR_5g024390 | 93.692 | 428 | 27 | 0 | 1 | 428 | 1 | 428 | 0.0 | 832 |
| MsG0580025220.01.T01 | MTR_5g024500 | 92.523 | 428 | 32 | 0 | 1 | 428 | 1 | 428 | 0.0 | 822 |
| MsG0580025220.01.T01 | MTR_3g103110 | 68.319 | 464 | 107 | 4 | 3 | 428 | 339 | 800 | 0.0 | 657 |
| MsG0580025220.01.T01 | MTR_7g109640 | 71.461 | 438 | 88 | 4 | 3 | 428 | 384 | 796 | 0.0 | 646 |
| MsG0580025220.01.T01 | MTR_3g103120 | 66.970 | 439 | 111 | 3 | 2 | 428 | 425 | 841 | 0.0 | 585 |
| MsG0580025220.01.T01 | MTR_5g071340 | 43.187 | 433 | 207 | 9 | 3 | 421 | 679 | 1086 | 1.01e-112 | 357 |
| MsG0580025220.01.T01 | MTR_3g464550 | 43.056 | 432 | 209 | 9 | 1 | 419 | 601 | 1008 | 2.47e-109 | 347 |
| MsG0580025220.01.T01 | MTR_3g103160 | 39.007 | 423 | 164 | 12 | 2 | 421 | 107 | 438 | 2.11e-71 | 232 |
| MsG0580025220.01.T01 | MTR_2g078040 | 34.033 | 429 | 247 | 8 | 3 | 419 | 762 | 1166 | 2.90e-71 | 244 |
| MsG0580025220.01.T01 | MTR_1g103830 | 34.965 | 429 | 245 | 5 | 3 | 419 | 606 | 1012 | 2.16e-68 | 236 |
| MsG0580025220.01.T01 | MTR_1g072130 | 32.598 | 408 | 243 | 6 | 3 | 398 | 812 | 1199 | 5.13e-61 | 214 |
| MsG0580025220.01.T01 | MTR_7g095140 | 31.579 | 304 | 196 | 5 | 125 | 425 | 13 | 307 | 5.12e-50 | 173 |
| MsG0580025220.01.T01 | MTR_4g099530 | 27.442 | 430 | 257 | 13 | 3 | 419 | 111 | 498 | 1.59e-40 | 151 |
| MsG0580025220.01.T01 | MTR_1g068930 | 25.173 | 433 | 240 | 12 | 36 | 419 | 495 | 892 | 8.09e-40 | 152 |
| MsG0580025220.01.T01 | MTR_1g068930 | 25.173 | 433 | 240 | 12 | 36 | 419 | 458 | 855 | 8.99e-40 | 152 |
| MsG0580025220.01.T01 | MTR_7g102610 | 24.468 | 470 | 237 | 14 | 29 | 426 | 527 | 950 | 5.58e-32 | 129 |
| MsG0580025220.01.T01 | MTR_4g056990 | 24.274 | 482 | 268 | 15 | 2 | 428 | 189 | 628 | 3.95e-31 | 126 |
| MsG0580025220.01.T01 | MTR_4g057290 | 25.587 | 426 | 212 | 10 | 37 | 394 | 126 | 514 | 1.77e-29 | 120 |
| MsG0580025220.01.T01 | MTR_4g050090 | 23.469 | 490 | 252 | 13 | 12 | 422 | 199 | 644 | 7.88e-28 | 117 |
| MsG0580025220.01.T01 | MTR_1g062330 | 23.356 | 441 | 260 | 15 | 37 | 421 | 386 | 804 | 6.33e-22 | 99.0 |
| MsG0580025220.01.T01 | MTR_6g061000 | 50.000 | 90 | 34 | 2 | 88 | 177 | 23 | 101 | 2.74e-19 | 83.2 |
| MsG0580025220.01.T01 | MTR_2g084425 | 30.556 | 180 | 116 | 4 | 245 | 423 | 847 | 1018 | 1.38e-17 | 85.9 |
| MsG0580025220.01.T01 | MTR_2g084425 | 23.529 | 289 | 139 | 6 | 12 | 251 | 470 | 725 | 2.74e-14 | 75.5 |
| MsG0580025220.01.T01 | MTR_2g084425 | 23.529 | 289 | 139 | 6 | 12 | 251 | 470 | 725 | 3.69e-14 | 75.1 |
| MsG0580025220.01.T01 | MTR_3g109988 | 29.891 | 184 | 100 | 6 | 217 | 390 | 191 | 355 | 5.31e-13 | 70.5 |
| MsG0580025220.01.T01 | MTR_3g110005 | 29.891 | 184 | 100 | 6 | 217 | 390 | 191 | 355 | 5.31e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025220.01.T01 | AT5G58610 | 41.014 | 434 | 215 | 7 | 3 | 419 | 368 | 777 | 1.08e-98 | 314 |
| MsG0580025220.01.T01 | AT5G58610 | 41.014 | 434 | 215 | 7 | 3 | 419 | 599 | 1008 | 2.58e-97 | 313 |
| MsG0580025220.01.T01 | AT5G58610 | 41.014 | 434 | 215 | 7 | 3 | 419 | 599 | 1008 | 2.58e-97 | 313 |
| MsG0580025220.01.T01 | AT5G58610 | 40.848 | 448 | 218 | 9 | 3 | 428 | 590 | 1012 | 4.23e-97 | 314 |
| MsG0580025220.01.T01 | AT5G58610 | 40.848 | 448 | 218 | 9 | 3 | 428 | 599 | 1021 | 5.99e-97 | 313 |
| MsG0580025220.01.T01 | AT5G58610 | 40.848 | 448 | 218 | 9 | 3 | 428 | 590 | 1012 | 7.05e-97 | 313 |
| MsG0580025220.01.T01 | AT5G58610 | 39.130 | 437 | 215 | 8 | 3 | 428 | 590 | 986 | 4.80e-87 | 286 |
| MsG0580025220.01.T01 | AT5G58610 | 39.130 | 437 | 215 | 8 | 3 | 428 | 590 | 986 | 6.81e-87 | 286 |
| MsG0580025220.01.T01 | AT5G58610 | 40.838 | 382 | 185 | 7 | 3 | 367 | 590 | 947 | 3.49e-82 | 271 |
| MsG0580025220.01.T01 | AT5G58610 | 40.838 | 382 | 185 | 7 | 3 | 367 | 599 | 956 | 3.58e-82 | 271 |
| MsG0580025220.01.T01 | AT5G58610 | 40.116 | 344 | 165 | 7 | 3 | 329 | 590 | 909 | 3.65e-68 | 233 |
| MsG0580025220.01.T01 | AT5G36740 | 32.401 | 429 | 254 | 6 | 3 | 419 | 545 | 949 | 3.50e-67 | 232 |
| MsG0580025220.01.T01 | AT5G36740 | 32.401 | 429 | 254 | 6 | 3 | 419 | 545 | 949 | 3.50e-67 | 232 |
| MsG0580025220.01.T01 | AT3G14980 | 31.871 | 433 | 261 | 7 | 3 | 425 | 621 | 1029 | 1.73e-64 | 224 |
| MsG0580025220.01.T01 | AT3G14980 | 31.871 | 433 | 261 | 7 | 3 | 425 | 576 | 984 | 3.15e-64 | 223 |
| MsG0580025220.01.T01 | AT3G14980 | 31.871 | 433 | 261 | 7 | 3 | 425 | 621 | 1029 | 4.01e-64 | 223 |
| MsG0580025220.01.T01 | AT3G14980 | 31.871 | 433 | 261 | 7 | 3 | 425 | 621 | 1029 | 4.01e-64 | 223 |
| MsG0580025220.01.T01 | AT3G14980 | 31.871 | 433 | 261 | 7 | 3 | 425 | 621 | 1029 | 4.01e-64 | 223 |
| MsG0580025220.01.T01 | AT1G05380 | 33.021 | 427 | 255 | 6 | 3 | 419 | 520 | 925 | 6.28e-64 | 223 |
| MsG0580025220.01.T01 | AT1G05380 | 33.021 | 427 | 255 | 6 | 3 | 419 | 520 | 925 | 6.28e-64 | 223 |
| MsG0580025220.01.T01 | AT1G05380 | 33.021 | 427 | 255 | 6 | 3 | 419 | 520 | 925 | 6.28e-64 | 223 |
| MsG0580025220.01.T01 | AT5G36740 | 31.435 | 439 | 255 | 7 | 3 | 419 | 392 | 806 | 1.04e-63 | 221 |
| MsG0580025220.01.T01 | AT5G63900 | 36.858 | 331 | 190 | 8 | 94 | 421 | 228 | 542 | 3.23e-62 | 211 |
| MsG0580025220.01.T01 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 4.78e-60 | 211 |
| MsG0580025220.01.T01 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 4.78e-60 | 211 |
| MsG0580025220.01.T01 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 5.07e-60 | 211 |
| MsG0580025220.01.T01 | AT5G36670 | 30.337 | 445 | 256 | 8 | 3 | 419 | 545 | 963 | 8.77e-59 | 208 |
| MsG0580025220.01.T01 | AT5G36670 | 30.337 | 445 | 256 | 8 | 3 | 419 | 545 | 963 | 8.77e-59 | 208 |
| MsG0580025220.01.T01 | AT5G36740 | 32.345 | 371 | 215 | 6 | 3 | 361 | 545 | 891 | 4.73e-57 | 202 |
| MsG0580025220.01.T01 | AT5G36740 | 32.345 | 371 | 215 | 6 | 3 | 361 | 545 | 891 | 4.73e-57 | 202 |
| MsG0580025220.01.T01 | AT5G36670 | 32.345 | 371 | 215 | 6 | 3 | 361 | 545 | 891 | 4.73e-57 | 202 |
| MsG0580025220.01.T01 | AT5G36670 | 29.451 | 455 | 257 | 9 | 3 | 419 | 392 | 820 | 4.50e-55 | 197 |
| MsG0580025220.01.T01 | AT5G36670 | 29.451 | 455 | 257 | 9 | 3 | 419 | 545 | 973 | 9.88e-55 | 196 |
| MsG0580025220.01.T01 | AT3G14980 | 30.769 | 338 | 200 | 7 | 3 | 330 | 621 | 934 | 7.19e-43 | 161 |
| MsG0580025220.01.T01 | AT3G53680 | 28.261 | 460 | 241 | 15 | 13 | 417 | 405 | 830 | 3.74e-40 | 153 |
| MsG0580025220.01.T01 | AT3G53680 | 28.261 | 460 | 241 | 15 | 13 | 417 | 403 | 828 | 4.02e-40 | 153 |
| MsG0580025220.01.T01 | AT2G37520 | 25.910 | 467 | 244 | 12 | 13 | 417 | 386 | 812 | 4.68e-40 | 153 |
| MsG0580025220.01.T01 | AT2G36720 | 25.470 | 479 | 251 | 14 | 13 | 423 | 533 | 973 | 5.10e-39 | 150 |
| MsG0580025220.01.T01 | AT2G36720 | 25.470 | 479 | 251 | 14 | 13 | 423 | 533 | 973 | 5.10e-39 | 150 |
| MsG0580025220.01.T01 | AT2G27980 | 24.390 | 492 | 252 | 16 | 10 | 422 | 610 | 1060 | 1.05e-31 | 128 |
Find 70 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTATCTGCAACCTTAAT+TGG | 0.181951 | 5:-15434207 | None:intergenic |
| TTCACATTCTTGTTTGCATT+TGG | 0.183779 | 5:-15434022 | None:intergenic |
| GTTTGTTCAGTTTGTGGTTT+TGG | 0.236361 | 5:+15433877 | MsG0580025220.01.T01:CDS |
| TGGTTTCTATAATGTGATTT+TGG | 0.241530 | 5:+15434422 | MsG0580025220.01.T01:CDS |
| GTGGCAACTATAAGGATTTA+TGG | 0.245404 | 5:+15434468 | MsG0580025220.01.T01:CDS |
| ATCAACTCTCTTCCTGATAA+AGG | 0.280267 | 5:-15434348 | None:intergenic |
| TCACATTCTTGTTTGCATTT+GGG | 0.312904 | 5:-15434021 | None:intergenic |
| GCATTCCACCTCCGGTGTTT+AGG | 0.316446 | 5:+15433934 | MsG0580025220.01.T01:CDS |
| GAACGATGGGTATTGTTTCT+TGG | 0.326060 | 5:+15433491 | None:intergenic |
| GTTGATAACGAATCAAGTTT+TGG | 0.327450 | 5:+15433513 | MsG0580025220.01.T01:CDS |
| TGATTTCAGTGGCAACTATA+AGG | 0.339394 | 5:+15434460 | MsG0580025220.01.T01:CDS |
| TTATGTCTAAAGAAGTTGTT+AGG | 0.347395 | 5:+15434180 | MsG0580025220.01.T01:CDS |
| AAAGGAGAGTAAGTTGAATA+TGG | 0.354999 | 5:+15434284 | MsG0580025220.01.T01:CDS |
| AATTTAATCACATGGAGAAT+TGG | 0.356404 | 5:+15434127 | MsG0580025220.01.T01:CDS |
| GATAGTGTTTGTTCAGTTTG+TGG | 0.378867 | 5:+15433871 | MsG0580025220.01.T01:CDS |
| CTGGGTTCGCATGATCATAA+AGG | 0.384834 | 5:+15433742 | MsG0580025220.01.T01:CDS |
| GGATTGTCAAAGGGAAGCTC+TGG | 0.400874 | 5:+15433723 | MsG0580025220.01.T01:CDS |
| AACACTTGGACAAGATCATT+TGG | 0.403595 | 5:+15434639 | MsG0580025220.01.T01:CDS |
| TGAAGAGGAGTTTAATCAAA+AGG | 0.404213 | 5:+15434266 | MsG0580025220.01.T01:CDS |
| GTCCTTCTGCATTCCACCTC+CGG | 0.404287 | 5:+15433926 | MsG0580025220.01.T01:CDS |
| AAGCACTGAAAAGACCTATA+TGG | 0.410177 | 5:+15434745 | MsG0580025220.01.T01:CDS |
| GGCTCTTGGTGTATTGTATG+AGG | 0.423950 | 5:+15434305 | MsG0580025220.01.T01:CDS |
| ACCATCCACAAGTATCTTGT+TGG | 0.424383 | 5:+15433681 | MsG0580025220.01.T01:CDS |
| GTTGTTAGGAAAACCAATTA+AGG | 0.435095 | 5:+15434194 | MsG0580025220.01.T01:CDS |
| ATTGAACACAAACAAGAATC+TGG | 0.437308 | 5:-15434059 | None:intergenic |
| ATCGAGTTCCGCTTGGTGAA+TGG | 0.464422 | 5:+15433962 | MsG0580025220.01.T01:CDS |
| CAAGCAATGCAAGGCCATAT+AGG | 0.465235 | 5:-15434759 | None:intergenic |
| CCTGATAAAGGATCAAAAGT+TGG | 0.477884 | 5:-15434336 | None:intergenic |
| ACAAGTATCTTGTTGGAAGA+TGG | 0.480189 | 5:+15433688 | MsG0580025220.01.T01:CDS |
| TTGTCTTCGATACTGTTCCT+TGG | 0.482098 | 5:-15434523 | None:intergenic |
| GGAAGATGGAAGGTCGTTGT+TGG | 0.488980 | 5:+15433702 | MsG0580025220.01.T01:CDS |
| GCTCTTGGTGTATTGTATGA+GGG | 0.493509 | 5:+15434306 | MsG0580025220.01.T01:CDS |
| TGGGTTCGCATGATCATAAA+GGG | 0.494630 | 5:+15433743 | MsG0580025220.01.T01:CDS |
| GAGAAACAGTTAACTCGCTT+AGG | 0.495020 | 5:+15434576 | MsG0580025220.01.T01:CDS |
| AGGAATGTGTCATTTGTTGA+TGG | 0.496868 | 5:+15434545 | MsG0580025220.01.T01:CDS |
| CAGAGGATGCTATGAACACT+TGG | 0.500216 | 5:+15434625 | MsG0580025220.01.T01:CDS |
| GTGATTAAATTCAATTCCTA+CGG | 0.512914 | 5:-15434115 | None:intergenic |
| GTCGTTGTTGGATTGTCAAA+GGG | 0.517227 | 5:+15433714 | MsG0580025220.01.T01:CDS |
| TCTTCGATACTGTTCCTTGG+TGG | 0.524421 | 5:-15434520 | None:intergenic |
| GGTCGTTGTTGGATTGTCAA+AGG | 0.528790 | 5:+15433713 | MsG0580025220.01.T01:CDS |
| AGTAAGTTGAATATGGCTCT+TGG | 0.540429 | 5:+15434291 | MsG0580025220.01.T01:CDS |
| TGAGACCTAAACACCGGAGG+TGG | 0.542694 | 5:-15433939 | None:intergenic |
| AGCAACAAAGTTGTCAAAAG+AGG | 0.543182 | 5:+15433565 | MsG0580025220.01.T01:CDS |
| ATCTTCCAACAAGATACTTG+TGG | 0.550941 | 5:-15433686 | None:intergenic |
| GGTCTCAATCGAGTTCCGCT+TGG | 0.551276 | 5:+15433955 | MsG0580025220.01.T01:CDS |
| ATATCACTTTGGATGCGTAA+AGG | 0.554258 | 5:+15434092 | MsG0580025220.01.T01:CDS |
| TGTGAATAGTGTTGATGAAG+AGG | 0.557314 | 5:+15434251 | MsG0580025220.01.T01:CDS |
| CACCGGGTTCGAGTCTCATG+CGG | 0.580247 | 5:+15433642 | MsG0580025220.01.T01:CDS |
| ACCGGGTTCGAGTCTCATGC+GGG | 0.582774 | 5:+15433643 | MsG0580025220.01.T01:CDS |
| GATTGTCAAAGGGAAGCTCT+GGG | 0.597706 | 5:+15433724 | MsG0580025220.01.T01:CDS |
| AGGAATTGAATTTAATCACA+TGG | 0.598130 | 5:+15434119 | MsG0580025220.01.T01:CDS |
| TTTCAGTGCTTTGAGACACA+TGG | 0.604056 | 5:-15434733 | None:intergenic |
| AGATAATCTAACATGGACAT+TGG | 0.607457 | 5:+15434221 | MsG0580025220.01.T01:CDS |
| CTCCAACATCAAGCAATGCA+AGG | 0.609626 | 5:-15434768 | None:intergenic |
| TCCAACAAGATACTTGTGGA+TGG | 0.616702 | 5:-15433682 | None:intergenic |
| CACCGGAGGTGGAATGCAGA+AGG | 0.621708 | 5:-15433928 | None:intergenic |
| GTATCTTGTTGGAAGATGGA+AGG | 0.629827 | 5:+15433692 | MsG0580025220.01.T01:CDS |
| ATTACTTCTGCATTCCTCAG+AGG | 0.633654 | 5:+15434608 | MsG0580025220.01.T01:CDS |
| ACAAGAATGTGAAGATCACA+AGG | 0.637763 | 5:+15434032 | MsG0580025220.01.T01:CDS |
| AATGGGTGAAGTGATTTCAG+TGG | 0.642896 | 5:+15434449 | MsG0580025220.01.T01:CDS |
| TTTGGATGCGTAAAGGCCGT+AGG | 0.643030 | 5:+15434099 | MsG0580025220.01.T01:CDS |
| ACCCGCATGAGACTCGAACC+CGG | 0.652073 | 5:-15433644 | None:intergenic |
| CTCGATTGAGACCTAAACAC+CGG | 0.653298 | 5:-15433945 | None:intergenic |
| AAATCACATTATAGAAACCA+CGG | 0.660195 | 5:-15434419 | None:intergenic |
| AGGTTGCAGATAATCTAACA+TGG | 0.665981 | 5:+15434214 | MsG0580025220.01.T01:CDS |
| GGACAAAACCATTCACCAAG+CGG | 0.675521 | 5:-15433970 | None:intergenic |
| AAGGAACAGTATCGAAGACA+AGG | 0.678537 | 5:+15434525 | MsG0580025220.01.T01:CDS |
| GCTACCCTGACAGAAAACAT+TGG | 0.690433 | 5:-15433545 | None:intergenic |
| AGTGTTCATAGCATCCTCTG+AGG | 0.736105 | 5:-15434622 | None:intergenic |
| GATTGAGACCTAAACACCGG+AGG | 0.741957 | 5:-15433942 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTTTAGAATTTGAGAA+TGG | + | Chr5:15434708-15434727 | MsG0580025220.01.T01:CDS | 20.0% |
| ! | AAATCACATTATAGAAACCA+CGG | - | Chr5:15434422-15434441 | None:intergenic | 25.0% |
| ! | AATTTAATCACATGGAGAAT+TGG | + | Chr5:15434127-15434146 | MsG0580025220.01.T01:CDS | 25.0% |
| ! | AGGAATTGAATTTAATCACA+TGG | + | Chr5:15434119-15434138 | MsG0580025220.01.T01:CDS | 25.0% |
| ! | GTGATTAAATTCAATTCCTA+CGG | - | Chr5:15434118-15434137 | None:intergenic | 25.0% |
| ! | TTATGTCTAAAGAAGTTGTT+AGG | + | Chr5:15434180-15434199 | MsG0580025220.01.T01:CDS | 25.0% |
| !! | TGGTTTCTATAATGTGATTT+TGG | + | Chr5:15434422-15434441 | MsG0580025220.01.T01:CDS | 25.0% |
| !!! | AATGTGATTTTGGAGAAAAT+GGG | + | Chr5:15434432-15434451 | MsG0580025220.01.T01:CDS | 25.0% |
| !!! | TAATGTGATTTTGGAGAAAA+TGG | + | Chr5:15434431-15434450 | MsG0580025220.01.T01:CDS | 25.0% |
| AGATAATCTAACATGGACAT+TGG | + | Chr5:15434221-15434240 | MsG0580025220.01.T01:CDS | 30.0% | |
| AGATTATCTGCAACCTTAAT+TGG | - | Chr5:15434210-15434229 | None:intergenic | 30.0% | |
| ATTGAACACAAACAAGAATC+TGG | - | Chr5:15434062-15434081 | None:intergenic | 30.0% | |
| GTTGTTAGGAAAACCAATTA+AGG | + | Chr5:15434194-15434213 | MsG0580025220.01.T01:CDS | 30.0% | |
| TGAAGAGGAGTTTAATCAAA+AGG | + | Chr5:15434266-15434285 | MsG0580025220.01.T01:CDS | 30.0% | |
| TGTGAGCAAAAATATCACTT+TGG | + | Chr5:15434081-15434100 | MsG0580025220.01.T01:CDS | 30.0% | |
| ! | AAAGGAGAGTAAGTTGAATA+TGG | + | Chr5:15434284-15434303 | MsG0580025220.01.T01:CDS | 30.0% |
| ! | CATATTTTGCAACAACAAGT+TGG | - | Chr5:15433994-15434013 | None:intergenic | 30.0% |
| ! | TCACATTCTTGTTTGCATTT+GGG | - | Chr5:15434024-15434043 | None:intergenic | 30.0% |
| ! | TTCACATTCTTGTTTGCATT+TGG | - | Chr5:15434025-15434044 | None:intergenic | 30.0% |
| !!! | GTTGATAACGAATCAAGTTT+TGG | + | Chr5:15433513-15433532 | MsG0580025220.01.T01:CDS | 30.0% |
| AACACTTGGACAAGATCATT+TGG | + | Chr5:15434639-15434658 | MsG0580025220.01.T01:CDS | 35.0% | |
| ACAAGAATGTGAAGATCACA+AGG | + | Chr5:15434032-15434051 | MsG0580025220.01.T01:CDS | 35.0% | |
| ACAAGTATCTTGTTGGAAGA+TGG | + | Chr5:15433688-15433707 | MsG0580025220.01.T01:CDS | 35.0% | |
| AGCAACAAAGTTGTCAAAAG+AGG | + | Chr5:15433565-15433584 | MsG0580025220.01.T01:CDS | 35.0% | |
| AGGTTGCAGATAATCTAACA+TGG | + | Chr5:15434214-15434233 | MsG0580025220.01.T01:CDS | 35.0% | |
| ATATCACTTTGGATGCGTAA+AGG | + | Chr5:15434092-15434111 | MsG0580025220.01.T01:CDS | 35.0% | |
| ATCAACTCTCTTCCTGATAA+AGG | - | Chr5:15434351-15434370 | None:intergenic | 35.0% | |
| ATCTTCCAACAAGATACTTG+TGG | - | Chr5:15433689-15433708 | None:intergenic | 35.0% | |
| CCTGATAAAGGATCAAAAGT+TGG | - | Chr5:15434339-15434358 | None:intergenic | 35.0% | |
| GATAGTGTTTGTTCAGTTTG+TGG | + | Chr5:15433871-15433890 | MsG0580025220.01.T01:CDS | 35.0% | |
| GTGGCAACTATAAGGATTTA+TGG | + | Chr5:15434468-15434487 | MsG0580025220.01.T01:CDS | 35.0% | |
| TGATTTCAGTGGCAACTATA+AGG | + | Chr5:15434460-15434479 | MsG0580025220.01.T01:CDS | 35.0% | |
| ! | AGTAAGTTGAATATGGCTCT+TGG | + | Chr5:15434291-15434310 | MsG0580025220.01.T01:CDS | 35.0% |
| ! | CCAACTTTTGATCCTTTATC+AGG | + | Chr5:15434336-15434355 | MsG0580025220.01.T01:CDS | 35.0% |
| ! | GTTTGTTCAGTTTGTGGTTT+TGG | + | Chr5:15433877-15433896 | MsG0580025220.01.T01:CDS | 35.0% |
| !! | AAGCACTGAAAAGACCTATA+TGG | + | Chr5:15434745-15434764 | MsG0580025220.01.T01:CDS | 35.0% |
| !! | AGGAATGTGTCATTTGTTGA+TGG | + | Chr5:15434545-15434564 | MsG0580025220.01.T01:CDS | 35.0% |
| !! | TGTGAATAGTGTTGATGAAG+AGG | + | Chr5:15434251-15434270 | MsG0580025220.01.T01:CDS | 35.0% |
| !!! | ACGAATCAAGTTTTGGTTTC+AGG | + | Chr5:15433520-15433539 | MsG0580025220.01.T01:CDS | 35.0% |
| !!! | CAAGATCATTTGGTTTTGCA+AGG | + | Chr5:15434649-15434668 | MsG0580025220.01.T01:CDS | 35.0% |
| !!! | CGAATCAAGTTTTGGTTTCA+GGG | + | Chr5:15433521-15433540 | MsG0580025220.01.T01:CDS | 35.0% |
| !!! | CGTGTTACTTTTACTATCAC+CGG | + | Chr5:15433625-15433644 | MsG0580025220.01.T01:CDS | 35.0% |
| !!! | GTGTTACTTTTACTATCACC+GGG | + | Chr5:15433626-15433645 | MsG0580025220.01.T01:CDS | 35.0% |
| AATGGGTGAAGTGATTTCAG+TGG | + | Chr5:15434449-15434468 | MsG0580025220.01.T01:CDS | 40.0% | |
| ACCATCCACAAGTATCTTGT+TGG | + | Chr5:15433681-15433700 | MsG0580025220.01.T01:CDS | 40.0% | |
| ATTACTTCTGCATTCCTCAG+AGG | + | Chr5:15434608-15434627 | MsG0580025220.01.T01:CDS | 40.0% | |
| CAAAAACGCTTAAACTTCCG+TGG | + | Chr5:15434402-15434421 | MsG0580025220.01.T01:CDS | 40.0% | |
| GAGAAACAGTTAACTCGCTT+AGG | + | Chr5:15434576-15434595 | MsG0580025220.01.T01:CDS | 40.0% | |
| GTATCTTGTTGGAAGATGGA+AGG | + | Chr5:15433692-15433711 | MsG0580025220.01.T01:CDS | 40.0% | |
| GTCGTTGTTGGATTGTCAAA+GGG | + | Chr5:15433714-15433733 | MsG0580025220.01.T01:CDS | 40.0% | |
| TCCAACAAGATACTTGTGGA+TGG | - | Chr5:15433685-15433704 | None:intergenic | 40.0% | |
| TGGGTTCGCATGATCATAAA+GGG | + | Chr5:15433743-15433762 | MsG0580025220.01.T01:CDS | 40.0% | |
| TTGTCTTCGATACTGTTCCT+TGG | - | Chr5:15434526-15434545 | None:intergenic | 40.0% | |
| ! | AAGGAACAGTATCGAAGACA+AGG | + | Chr5:15434525-15434544 | MsG0580025220.01.T01:CDS | 40.0% |
| ! | AGTTGCAGAGATAGTTTTCG+TGG | + | Chr5:15434497-15434516 | MsG0580025220.01.T01:CDS | 40.0% |
| ! | GCTCTTGGTGTATTGTATGA+GGG | + | Chr5:15434306-15434325 | MsG0580025220.01.T01:CDS | 40.0% |
| !! | GGTTTTGCAGTGTAGTTTGT+GGG | + | Chr5:15434148-15434167 | MsG0580025220.01.T01:CDS | 40.0% |
| !! | TGGTTTTGCAGTGTAGTTTG+TGG | + | Chr5:15434147-15434166 | MsG0580025220.01.T01:CDS | 40.0% |
| !! | TTTCAGTGCTTTGAGACACA+TGG | - | Chr5:15434736-15434755 | None:intergenic | 40.0% |
| !!! | TGTTCAGTTTGTGGTTTTGG+AGG | + | Chr5:15433880-15433899 | MsG0580025220.01.T01:CDS | 40.0% |
| AGTGTTCATAGCATCCTCTG+AGG | - | Chr5:15434625-15434644 | None:intergenic | 45.0% | |
| CAAGCAATGCAAGGCCATAT+AGG | - | Chr5:15434762-15434781 | None:intergenic | 45.0% | |
| CAGAGGATGCTATGAACACT+TGG | + | Chr5:15434625-15434644 | MsG0580025220.01.T01:CDS | 45.0% | |
| CTCGATTGAGACCTAAACAC+CGG | - | Chr5:15433948-15433967 | None:intergenic | 45.0% | |
| CTGGGTTCGCATGATCATAA+AGG | + | Chr5:15433742-15433761 | MsG0580025220.01.T01:CDS | 45.0% | |
| GATTGTCAAAGGGAAGCTCT+GGG | + | Chr5:15433724-15433743 | MsG0580025220.01.T01:CDS | 45.0% | |
| GCTACCCTGACAGAAAACAT+TGG | - | Chr5:15433548-15433567 | None:intergenic | 45.0% | |
| GGACAAAACCATTCACCAAG+CGG | - | Chr5:15433973-15433992 | None:intergenic | 45.0% | |
| GGTCGTTGTTGGATTGTCAA+AGG | + | Chr5:15433713-15433732 | MsG0580025220.01.T01:CDS | 45.0% | |
| TCTTCGATACTGTTCCTTGG+TGG | - | Chr5:15434523-15434542 | None:intergenic | 45.0% | |
| ! | AGGGACCAATGTTTTCTGTC+AGG | + | Chr5:15433540-15433559 | MsG0580025220.01.T01:CDS | 45.0% |
| ! | GGCTCTTGGTGTATTGTATG+AGG | + | Chr5:15434305-15434324 | MsG0580025220.01.T01:CDS | 45.0% |
| ! | GGGACCAATGTTTTCTGTCA+GGG | + | Chr5:15433541-15433560 | MsG0580025220.01.T01:CDS | 45.0% |
| !!! | TTGTGGTTTTGGAGGTGACT+TGG | + | Chr5:15433888-15433907 | MsG0580025220.01.T01:CDS | 45.0% |
| GATTGAGACCTAAACACCGG+AGG | - | Chr5:15433945-15433964 | None:intergenic | 50.0% | |
| GGAAGATGGAAGGTCGTTGT+TGG | + | Chr5:15433702-15433721 | MsG0580025220.01.T01:CDS | 50.0% | |
| GGATTGTCAAAGGGAAGCTC+TGG | + | Chr5:15433723-15433742 | MsG0580025220.01.T01:CDS | 50.0% | |
| TTTGGATGCGTAAAGGCCGT+AGG | + | Chr5:15434099-15434118 | MsG0580025220.01.T01:CDS | 50.0% | |
| ! | ATCGAGTTCCGCTTGGTGAA+TGG | + | Chr5:15433962-15433981 | MsG0580025220.01.T01:CDS | 50.0% |
| ! | GATAGTTTTCGTGGCCACCA+AGG | + | Chr5:15434506-15434525 | MsG0580025220.01.T01:CDS | 50.0% |
| GCATTCCACCTCCGGTGTTT+AGG | + | Chr5:15433934-15433953 | MsG0580025220.01.T01:CDS | 55.0% | |
| GGTCTCAATCGAGTTCCGCT+TGG | + | Chr5:15433955-15433974 | MsG0580025220.01.T01:CDS | 55.0% | |
| GTCCTTCTGCATTCCACCTC+CGG | + | Chr5:15433926-15433945 | MsG0580025220.01.T01:CDS | 55.0% | |
| TGAGACCTAAACACCGGAGG+TGG | - | Chr5:15433942-15433961 | None:intergenic | 55.0% | |
| ACCCGCATGAGACTCGAACC+CGG | - | Chr5:15433647-15433666 | None:intergenic | 60.0% | |
| ACCGGGTTCGAGTCTCATGC+GGG | + | Chr5:15433643-15433662 | MsG0580025220.01.T01:CDS | 60.0% | |
| CACCGGAGGTGGAATGCAGA+AGG | - | Chr5:15433931-15433950 | None:intergenic | 60.0% | |
| CACCGGGTTCGAGTCTCATG+CGG | + | Chr5:15433642-15433661 | MsG0580025220.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 15433496 | 15434782 | 15433496 | ID=MsG0580025220.01;Name=MsG0580025220.01 |
| Chr5 | mRNA | 15433496 | 15434782 | 15433496 | ID=MsG0580025220.01.T01;Parent=MsG0580025220.01;Name=MsG0580025220.01.T01;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|428 |
| Chr5 | exon | 15433496 | 15434782 | 15433496 | ID=MsG0580025220.01.T01:exon:20889;Parent=MsG0580025220.01.T01 |
| Chr5 | CDS | 15433496 | 15434782 | 15433496 | ID=MsG0580025220.01.T01:cds;Parent=MsG0580025220.01.T01 |
| Gene Sequence |
| Protein sequence |
