AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025393.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025393.01.T01 MTR_5g027550 82.917 240 18 4 47 274 1 229 2.91e-125 356
MsG0580025393.01.T01 MTR_5g027570 65.254 236 69 5 47 274 1 231 4.34e-97 285
MsG0580025393.01.T01 MTR_5g088060 52.234 291 66 8 43 274 185 461 2.22e-80 250
MsG0580025393.01.T01 MTR_5g488160 52.234 291 66 8 43 274 185 461 2.22e-80 250
MsG0580025393.01.T01 MTR_5g088010 52.713 258 55 6 75 274 1 249 1.08e-77 236
MsG0580025393.01.T01 MTR_1g111830 32.836 201 113 8 60 245 45 238 1.77e-22 93.6
MsG0580025393.01.T01 MTR_5g081860 34.597 211 98 8 75 259 66 262 5.32e-22 92.8
MsG0580025393.01.T01 MTR_7g067080 56.579 76 30 1 130 205 136 208 6.81e-22 93.2
MsG0580025393.01.T01 MTR_3g462790 57.895 76 29 1 130 205 143 215 3.28e-21 91.7
MsG0580025393.01.T01 MTR_5g069710 57.895 76 29 1 130 205 128 200 5.11e-21 90.9
MsG0580025393.01.T01 MTR_8g063600 51.250 80 38 1 130 209 102 180 5.37e-20 87.8
MsG0580025393.01.T01 MTR_8g063870 40.909 132 60 5 80 209 51 166 1.31e-19 86.3
MsG0580025393.01.T01 MTR_2g100930 39.252 107 61 2 130 235 105 208 1.70e-19 87.0
MsG0580025393.01.T01 MTR_4g107230 38.739 111 61 3 117 226 66 170 9.41e-19 84.3
MsG0580025393.01.T01 MTR_6g092540 52.778 72 31 1 130 201 93 161 1.04e-18 84.0
MsG0580025393.01.T01 MTR_4g111975 46.341 82 41 1 130 211 134 212 1.15e-18 84.3
MsG0580025393.01.T01 MTR_4g100630 32.812 128 80 2 89 213 47 171 1.20e-17 81.6
MsG0580025393.01.T01 MTR_8g101650 52.778 72 30 1 130 201 101 168 1.24e-17 80.9
MsG0580025393.01.T01 MTR_1g048660 51.389 72 32 1 136 207 14 82 1.72e-17 75.9
MsG0580025393.01.T01 MTR_4g015130 54.839 62 25 1 144 205 3 61 3.22e-17 75.1
MsG0580025393.01.T01 MTR_3g104370 45.946 74 40 0 128 201 85 158 5.59e-17 78.2
MsG0580025393.01.T01 MTR_5g037080 40.000 115 56 3 96 210 71 172 6.87e-17 79.3
MsG0580025393.01.T01 MTR_5g075760 34.965 143 82 4 83 225 61 192 3.01e-16 75.9
MsG0580025393.01.T01 MTR_5g075790 33.071 127 77 3 103 225 78 200 5.96e-15 72.4
MsG0580025393.01.T01 MTR_1g083180 43.590 78 43 1 131 208 58 134 1.60e-14 70.5
MsG0580025393.01.T01 MTR_3g070110 48.611 72 33 1 135 202 96 167 3.57e-14 70.1
MsG0580025393.01.T01 MTR_0036s0260 43.478 69 36 1 134 202 28 93 4.79e-14 69.7
MsG0580025393.01.T01 MTR_1g033620 51.613 62 27 1 150 211 21 79 9.69e-14 69.3
MsG0580025393.01.T01 MTR_2g090305 44.928 69 35 1 134 202 28 93 3.93e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025393.01.T01 AT5G58900 52.222 90 40 1 130 219 137 223 1.90e-22 94.4
MsG0580025393.01.T01 AT5G08520 36.129 155 84 4 69 211 41 192 9.33e-22 92.8
MsG0580025393.01.T01 AT5G01200 57.895 76 29 1 130 205 142 214 1.27e-21 91.7
MsG0580025393.01.T01 AT2G38090 55.263 76 31 1 130 205 137 209 2.52e-21 91.7
MsG0580025393.01.T01 AT5G23650 41.176 136 69 3 117 250 103 229 7.38e-21 90.9
MsG0580025393.01.T01 AT3G11280 50.000 86 40 1 120 205 113 195 8.65e-21 89.4
MsG0580025393.01.T01 AT3G11280 50.000 86 40 1 120 205 113 195 8.65e-21 89.4
MsG0580025393.01.T01 AT5G04760 47.826 92 43 2 122 213 87 173 3.04e-20 87.0
MsG0580025393.01.T01 AT3G10580 35.036 137 71 4 78 214 51 169 9.90e-20 86.3
MsG0580025393.01.T01 AT5G05790 48.276 87 42 1 119 205 116 199 1.22e-19 86.7
MsG0580025393.01.T01 AT5G05790 48.276 87 42 1 119 205 116 199 1.22e-19 86.7
MsG0580025393.01.T01 AT3G10580 43.434 99 48 3 118 214 77 169 1.57e-19 86.3
MsG0580025393.01.T01 AT1G49010 48.148 81 39 1 126 206 126 203 7.03e-19 85.1
MsG0580025393.01.T01 AT1G19000 36.170 141 77 4 107 242 70 202 8.01e-19 84.3
MsG0580025393.01.T01 AT1G19000 36.170 141 77 4 107 242 70 202 8.01e-19 84.3
MsG0580025393.01.T01 AT5G61620 50.000 80 33 2 124 203 102 174 2.26e-18 83.6
MsG0580025393.01.T01 AT5G47390 37.391 115 63 4 126 238 88 195 1.97e-17 81.6
MsG0580025393.01.T01 AT5G56840 48.052 77 38 1 130 206 87 161 2.43e-17 79.3
MsG0580025393.01.T01 AT1G74840 54.688 64 29 0 117 180 79 142 6.77e-17 78.2
MsG0580025393.01.T01 AT1G74840 54.688 64 29 0 117 180 79 142 7.48e-17 78.6
MsG0580025393.01.T01 AT4G09450 36.066 122 61 3 83 204 54 158 1.75e-16 76.3
MsG0580025393.01.T01 AT1G70000 45.349 86 32 2 111 181 60 145 7.42e-16 75.9
MsG0580025393.01.T01 AT1G70000 45.349 86 32 2 111 181 60 145 7.42e-16 75.9
MsG0580025393.01.T01 AT3G10590 44.118 102 50 3 108 207 84 180 8.34e-16 74.7
MsG0580025393.01.T01 AT3G16350 57.143 56 23 1 127 181 129 184 4.59e-15 74.7

Find 53 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATTGTCCTTGTTATTTA+AGG 0.115096 5:-17935469 None:intergenic
TTCTCAAGTTTGTTCATATC+AGG 0.200852 5:-17935555 None:intergenic
TATTGTGTCGTTGTTGTTTA+AGG 0.220107 5:-17935397 None:intergenic
TTTCTTCTTCTCTATTTCTT+TGG 0.241888 5:-17935349 None:intergenic
TCTCTATTTCTTTGGCAGTT+TGG 0.295652 5:-17935341 None:intergenic
TTTGCTTCATGATTTCCTTC+TGG 0.308505 5:-17933719 None:intergenic
TCAAGTGCGGGGTTATATTA+AGG 0.334652 5:+17929951 MsG0580025393.01.T01:CDS
GCGCAACTTGTTCAACTTGT+TGG 0.354873 5:+17935581 MsG0580025393.01.T01:CDS
GATATGTAGGTCGTTTCTAC+AGG 0.371977 5:+17935209 MsG0580025393.01.T01:intron
TTGTGTTCAATATAGATATA+AGG 0.383893 5:+17930635 MsG0580025393.01.T01:CDS
ACGTTATTATCATTAGAGTT+TGG 0.391291 5:-17933647 None:intergenic
TGTTGGTCCATGCTACTCTC+AGG 0.426716 5:-17933572 None:intergenic
AGGCCAACTGATACATTTGT+TGG 0.437602 5:-17935506 None:intergenic
CTATTTCTTTGGCAGTTTGG+TGG 0.446999 5:-17935338 None:intergenic
GACACTGATGTCGTTGAGTC+GGG 0.460235 5:+17933608 MsG0580025393.01.T01:CDS
TTGGCCTTGCTTTATCCAAT+CGG 0.464369 5:+17935522 MsG0580025393.01.T01:CDS
TGTCAAGTATCTCTCGTTGT+TGG 0.465502 5:-17933589 None:intergenic
GAGTTTGGAATTGCGACGGC+AGG 0.472532 5:-17933632 None:intergenic
GGGTTATATTAAGGACTTTG+AGG 0.473001 5:+17929960 MsG0580025393.01.T01:CDS
GGCCAACTGATACATTTGTT+GGG 0.476834 5:-17935505 None:intergenic
GCATGACTAGCAATTTGAGT+TGG 0.487768 5:-17935297 None:intergenic
TCTCAAGTTTGTTCATATCA+GGG 0.519074 5:-17935554 None:intergenic
GTTGGTCCATGCTACTCTCA+GGG 0.529569 5:-17933571 None:intergenic
AAAGAGAGGGCGTAAGGAAA+GGG 0.530997 5:+17933739 MsG0580025393.01.T01:CDS
CAAAGAGAGGGCGTAAGGAA+AGG 0.532803 5:+17933738 MsG0580025393.01.T01:CDS
TGACACTGATGTCGTTGAGT+CGG 0.533047 5:+17933607 MsG0580025393.01.T01:CDS
ACGTGAGTTAGCTCAAGTGC+GGG 0.534129 5:+17929939 MsG0580025393.01.T01:CDS
TCAGGGAGTGCAGTACCGAT+TGG 0.538184 5:-17935537 None:intergenic
ATATGTAGGTCGTTTCTACA+GGG 0.546671 5:+17935210 MsG0580025393.01.T01:intron
TGAAGCAAAGAGAGGGCGTA+AGG 0.548372 5:+17933733 MsG0580025393.01.T01:CDS
CACTTGAGCTAACTCACGTT+CGG 0.552717 5:-17929935 None:intergenic
GGAAATCATGAAGCAAAGAG+AGG 0.559557 5:+17933725 MsG0580025393.01.T01:CDS
TTTAAGGTAGCTGTGTCTTG+AGG 0.565081 5:-17935453 None:intergenic
CACAGCTACCTTAAATAACA+AGG 0.577999 5:+17935461 MsG0580025393.01.T01:CDS
AACCCAACAAATGTATCAGT+TGG 0.579773 5:+17935503 MsG0580025393.01.T01:CDS
GGCGTAAGGAAAGGGTACAT+TGG 0.585151 5:+17933747 MsG0580025393.01.T01:CDS
AAGGTAGCTGTGTCTTGAGG+AGG 0.587982 5:-17935450 None:intergenic
TAAGGAAAGGGTACATTGGA+CGG 0.593107 5:+17933751 MsG0580025393.01.T01:CDS
TTGGTCCATGCTACTCTCAG+GGG 0.607107 5:-17933570 None:intergenic
CAAGCTGAGTCAGTGCCAGA+AGG 0.610015 5:+17933704 MsG0580025393.01.T01:CDS
GAAAGGGTACATTGGACGGA+AGG 0.614122 5:+17933755 MsG0580025393.01.T01:CDS
TTATATCTATATTGAACACA+AGG 0.623205 5:-17930633 None:intergenic
AACGTGAGTTAGCTCAAGTG+CGG 0.627006 5:+17929938 MsG0580025393.01.T01:CDS
ATCATATTGATCTAAATGAG+CGG 0.629575 5:+17933531 MsG0580025393.01.T01:CDS
TGGTCCATGCTACTCTCAGG+GGG 0.640410 5:-17933569 None:intergenic
ATTAGAGTTTGGAATTGCGA+CGG 0.644987 5:-17933636 None:intergenic
GAAATCATGAAGCAAAGAGA+GGG 0.647840 5:+17933726 MsG0580025393.01.T01:CDS
ATGTAGGTCGTTTCTACAGG+GGG 0.657825 5:+17935212 MsG0580025393.01.T01:intron
TCATTTAGATCAATATGATG+AGG 0.668191 5:-17933527 None:intergenic
AGTACCGATTGGATAAAGCA+AGG 0.686649 5:-17935526 None:intergenic
CGTGAGTTAGCTCAAGTGCG+GGG 0.695477 5:+17929940 MsG0580025393.01.T01:CDS
TATGTAGGTCGTTTCTACAG+GGG 0.695640 5:+17935211 MsG0580025393.01.T01:intron
CAACGTGACTTAACTCACGT+TGG 0.697535 5:+17929907 MsG0580025393.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTATAAAAAGTGATAT+AGG - Chr5:17930735-17930754 None:intergenic 10.0%
!! AATTATGATATAAAAATGAA+GGG - Chr5:17931840-17931859 None:intergenic 10.0%
!! TTTATTTAAAAATATCTAAG+AGG + Chr5:17931420-17931439 MsG0580025393.01.T01:intron 10.0%
!!! TCAATTATATTTCATAATTT+TGG - Chr5:17930587-17930606 None:intergenic 10.0%
!!! TGTTTCAAAAATATTTATTT+TGG + Chr5:17931196-17931215 MsG0580025393.01.T01:intron 10.0%
!!! TGTTTTTTTTAATAAAGTTA+GGG - Chr5:17932381-17932400 None:intergenic 10.0%
!!! TGTTTTTTTTTATAAAGTTA+GGG - Chr5:17932534-17932553 None:intergenic 10.0%
!!! TTATCCTTTAATTTTAAAAA+GGG - Chr5:17932449-17932468 None:intergenic 10.0%
!!! TTATTTATTTTTTGAACATA+GGG - Chr5:17932498-17932517 None:intergenic 10.0%
!!! TTGTTTTTTTTAATAAAGTT+AGG - Chr5:17932382-17932401 None:intergenic 10.0%
!!! TTGTTTTTTTTTATAAAGTT+AGG - Chr5:17932535-17932554 None:intergenic 10.0%
!!! TTTATCCTTTAATTTTAAAA+AGG - Chr5:17932450-17932469 None:intergenic 10.0%
!!! TTTATTTATTTTTTGAACAT+AGG - Chr5:17932499-17932518 None:intergenic 10.0%
!! AAAAACAAAAGATTGATTAA+AGG + Chr5:17932322-17932341 MsG0580025393.01.T01:intron 15.0%
!! AAAATCAATTTCATCAAATT+TGG - Chr5:17933448-17933467 None:intergenic 15.0%
!! AACATAAAATGATTGATTAA+AGG + Chr5:17932568-17932587 MsG0580025393.01.T01:intron 15.0%
!! AACATTCAAAATCATATATT+TGG - Chr5:17931117-17931136 None:intergenic 15.0%
!! AATATTCTTATGTTTAATGA+GGG - Chr5:17930131-17930150 None:intergenic 15.0%
!! ATAACAAGAGAAATATATTT+AGG + Chr5:17930446-17930465 MsG0580025393.01.T01:intron 15.0%
!! ATATAGATATAAGGAAAAAT+AGG + Chr5:17930644-17930663 MsG0580025393.01.T01:CDS 15.0%
!! CAATTATGATATAAAAATGA+AGG - Chr5:17931841-17931860 None:intergenic 15.0%
!! CATTATATCAAAAACATATT+TGG + Chr5:17933249-17933268 MsG0580025393.01.T01:intron 15.0%
!! GGTATAATTGATAAATTATA+TGG + Chr5:17932082-17932101 MsG0580025393.01.T01:intron 15.0%
!! TAATATTCTTATGTTTAATG+AGG - Chr5:17930132-17930151 None:intergenic 15.0%
!! TTTACATAAAATCAAAGTTA+AGG + Chr5:17931009-17931028 MsG0580025393.01.T01:intron 15.0%
!!! AAAACCCTTTTTAAAATTAA+AGG + Chr5:17932442-17932461 MsG0580025393.01.T01:intron 15.0%
!!! AAATTGATTTTAAGTTCTTA+TGG + Chr5:17933457-17933476 MsG0580025393.01.T01:intron 15.0%
!!! AAATTTTATTTTCCTTTCAT+TGG - Chr5:17931787-17931806 None:intergenic 15.0%
!!! AAGTAAGACTTTTTTTATTT+AGG + Chr5:17930846-17930865 MsG0580025393.01.T01:intron 15.0%
!!! AGTAAGACTTTTTTTATTTA+GGG + Chr5:17930847-17930866 MsG0580025393.01.T01:intron 15.0%
!!! ATAAAGTAGTCTTATAAAAA+GGG + Chr5:17934691-17934710 MsG0580025393.01.T01:intron 15.0%
!!! ATTTATATTTTGTGATATGT+AGG + Chr5:17935196-17935215 MsG0580025393.01.T01:intron 15.0%
!!! ATTTGTTATAAGAAAAATTG+CGG + Chr5:17932195-17932214 MsG0580025393.01.T01:intron 15.0%
!!! GAAAAAATATTTTTGTTCAT+AGG + Chr5:17935048-17935067 MsG0580025393.01.T01:intron 15.0%
!!! GGATTCAAAATTTTAATTTT+TGG + Chr5:17933276-17933295 MsG0580025393.01.T01:intron 15.0%
!!! TATAAAGTAGTCTTATAAAA+AGG + Chr5:17934690-17934709 MsG0580025393.01.T01:intron 15.0%
!!! TCTTTTTTTGCTTATAATTT+GGG + Chr5:17934556-17934575 MsG0580025393.01.T01:intron 15.0%
!!! TTGAAATTTTGTAAAATTTG+TGG + Chr5:17934075-17934094 MsG0580025393.01.T01:intron 15.0%
!! AATATAATTGAACTATACAG+AGG + Chr5:17930596-17930615 MsG0580025393.01.T01:intron 20.0%
!! ATATATATATATCACTTCCA+AGG - Chr5:17933809-17933828 None:intergenic 20.0%
!! ATCAAAAACATATTTGGATT+CGG + Chr5:17933255-17933274 MsG0580025393.01.T01:intron 20.0%
!! ATTGTAAGTATATGTAATTG+AGG + Chr5:17932056-17932075 MsG0580025393.01.T01:intron 20.0%
!! CATATTTAATTAATATGGGA+CGG - Chr5:17934525-17934544 None:intergenic 20.0%
!! GTATATTATTCCTATAGAAA+GGG - Chr5:17934375-17934394 None:intergenic 20.0%
!! TAGATAGTTTATGTAAATTG+TGG - Chr5:17933398-17933417 None:intergenic 20.0%
!! TCTAAATACTATACAAAATG+TGG - Chr5:17934796-17934815 None:intergenic 20.0%
!! TGTATATTATTCCTATAGAA+AGG - Chr5:17934376-17934395 None:intergenic 20.0%
!! TTATATCTATATTGAACACA+AGG - Chr5:17930636-17930655 None:intergenic 20.0%
!! TTGTGTTCAATATAGATATA+AGG + Chr5:17930635-17930654 MsG0580025393.01.T01:CDS 20.0%
!! TTTATACGATCTTGATTTAT+AGG - Chr5:17932681-17932700 None:intergenic 20.0%
!! TTTATTTAGGGAAACTAAAA+AGG + Chr5:17930859-17930878 MsG0580025393.01.T01:intron 20.0%
!!! AGTATATTTTTTTACTAGCT+AGG - Chr5:17932600-17932619 None:intergenic 20.0%
!!! ATATTGATAATATTAACGAG+AGG + Chr5:17934595-17934614 MsG0580025393.01.T01:intron 20.0%
!!! ATTAGAGGTTTTTTATTTCA+AGG - Chr5:17930004-17930023 None:intergenic 20.0%
!!! ATTATGTAGTATTTTCATGA+TGG - Chr5:17930215-17930234 None:intergenic 20.0%
!!! ATTGTCATTTAATTGTTTTC+TGG + Chr5:17930336-17930355 MsG0580025393.01.T01:intron 20.0%
!!! CACTTTTTTGACAAAATTAA+AGG + Chr5:17932350-17932369 MsG0580025393.01.T01:intron 20.0%
!!! GTATATATATTGACTATTAG+AGG - Chr5:17930019-17930038 None:intergenic 20.0%
!!! GTATATTTTTTTACTAGCTA+GGG - Chr5:17932599-17932618 None:intergenic 20.0%
!!! GTCTTTTTTTGCTTATAATT+TGG + Chr5:17934555-17934574 MsG0580025393.01.T01:intron 20.0%
!!! TTGTAGATAGTCTTATATTT+AGG + Chr5:17934654-17934673 MsG0580025393.01.T01:intron 20.0%
!!! TTTGATTTTAGTATCTATCA+TGG + Chr5:17933085-17933104 MsG0580025393.01.T01:intron 20.0%
!!! TTTTTTTAAGGAAGAACATA+GGG - Chr5:17932473-17932492 None:intergenic 20.0%
!!! TTTTTTTTAAGGAAGAACAT+AGG - Chr5:17932474-17932493 None:intergenic 20.0%
! AAAACACAACTGTAATTGAA+AGG + Chr5:17932278-17932297 MsG0580025393.01.T01:intron 25.0%
! AAAATCTACAATCTAAACCT+AGG + Chr5:17934947-17934966 MsG0580025393.01.T01:intron 25.0%
! AAACACAACTGTAATTGAAA+GGG + Chr5:17932279-17932298 MsG0580025393.01.T01:intron 25.0%
! AAATCGTGATATAAAATGAG+TGG - Chr5:17931817-17931836 None:intergenic 25.0%
! AACAAACTTATCTCTATATC+CGG - Chr5:17932235-17932254 None:intergenic 25.0%
! AACAAGATATGCGAAAAAAA+CGG + Chr5:17932397-17932416 MsG0580025393.01.T01:intron 25.0%
! AAGTATATGTAATTGAGGAA+GGG + Chr5:17932061-17932080 MsG0580025393.01.T01:intron 25.0%
! AAGTATATTCAATCTATCCT+TGG + Chr5:17933789-17933808 MsG0580025393.01.T01:intron 25.0%
! AATAGGTAAAACCACAAAAA+AGG - Chr5:17933017-17933036 None:intergenic 25.0%
! ACGTTATTATCATTAGAGTT+TGG - Chr5:17933650-17933669 None:intergenic 25.0%
! ATAGGAATAATATACAACAC+TGG + Chr5:17934380-17934399 MsG0580025393.01.T01:intron 25.0%
! ATATACTTAATAGTCAACAG+TGG + Chr5:17934105-17934124 MsG0580025393.01.T01:intron 25.0%
! ATCATATTGATCTAAATGAG+CGG + Chr5:17933531-17933550 MsG0580025393.01.T01:CDS 25.0%
! GGAACATATATCTATAAAGT+TGG + Chr5:17930357-17930376 MsG0580025393.01.T01:intron 25.0%
! GTGCTTAGTAAAATATAAAG+AGG - Chr5:17934283-17934302 None:intergenic 25.0%
! TAAGTATATGTAATTGAGGA+AGG + Chr5:17932060-17932079 MsG0580025393.01.T01:intron 25.0%
! TACAAATTATTGCTATCAAG+AGG + Chr5:17932254-17932273 MsG0580025393.01.T01:intron 25.0%
! TACACTCCATTCAAAATTAT+TGG - Chr5:17932950-17932969 None:intergenic 25.0%
! TATACTTAATAGTCAACAGT+GGG + Chr5:17934106-17934125 MsG0580025393.01.T01:intron 25.0%
! TCATTTAGATCAATATGATG+AGG - Chr5:17933530-17933549 None:intergenic 25.0%
! TGACGTAAATACATATCAAT+TGG - Chr5:17935002-17935021 None:intergenic 25.0%
! TTACATACATATTCATCAAG+AGG - Chr5:17930472-17930491 None:intergenic 25.0%
! TTCAAAGAAGTTTAAACTTC+AGG + Chr5:17931958-17931977 MsG0580025393.01.T01:intron 25.0%
!! AATAAGAACTTTTGATGTGA+TGG - Chr5:17934760-17934779 None:intergenic 25.0%
!! ATATATTTCTCTTGTTATGC+AGG - Chr5:17930444-17930463 None:intergenic 25.0%
!! GAGATTCCAATAATTTTGAA+TGG + Chr5:17932941-17932960 MsG0580025393.01.T01:intron 25.0%
!! TTTCTTCTTCTCTATTTCTT+TGG - Chr5:17935352-17935371 None:intergenic 25.0%
!!! GAACATAGGGTTTTTTTTTA+AGG - Chr5:17932485-17932504 None:intergenic 25.0%
!!! GAATTTCATGTTTTTCAAGA+GGG - Chr5:17935431-17935450 None:intergenic 25.0%
!!! TCTATCATGGTTTTAATTTG+TGG + Chr5:17933098-17933117 MsG0580025393.01.T01:intron 25.0%
!!! TGTTTTTTGTTACAGGAATA+TGG + Chr5:17933481-17933500 MsG0580025393.01.T01:intron 25.0%
!!! TTATGGTTGTTTTTTGTTAC+AGG + Chr5:17933474-17933493 MsG0580025393.01.T01:intron 25.0%
ACAAACTTATCTCTATATCC+GGG - Chr5:17932234-17932253 None:intergenic 30.0%
ACATGATAATCATCGCATAA+AGG + Chr5:17930676-17930695 MsG0580025393.01.T01:intron 30.0%
AGAGAAAATTTGAACGAACA+TGG + Chr5:17933299-17933318 MsG0580025393.01.T01:intron 30.0%
ATACGATCTTGATTTATAGG+AGG - Chr5:17932678-17932697 None:intergenic 30.0%
ATTATTCCTATAGAAAGGGA+CGG - Chr5:17934371-17934390 None:intergenic 30.0%
ATTTAATTAATATGGGACGG+AGG - Chr5:17934522-17934541 None:intergenic 30.0%
CTCTTAATCTCTTATTCACT+TGG + Chr5:17931617-17931636 MsG0580025393.01.T01:intron 30.0%
GGAATTGCATAAAACGATTT+CGG - Chr5:17933325-17933344 None:intergenic 30.0%
GGTTAAACTATAAAAACGAC+AGG + Chr5:17932103-17932122 MsG0580025393.01.T01:intron 30.0%
TACTTGACTAATCATGTTGA+GGG + Chr5:17930388-17930407 MsG0580025393.01.T01:intron 30.0%
TCTCTATGCAAAGATAATCT+TGG + Chr5:17934192-17934211 MsG0580025393.01.T01:intron 30.0%
TGAATAAGAGATTAAGAGAG+AGG - Chr5:17931615-17931634 None:intergenic 30.0%
TTAACGTCTTGTCAATAATC+CGG + Chr5:17932723-17932742 MsG0580025393.01.T01:intron 30.0%
TTTAATTAATATGGGACGGA+GGG - Chr5:17934521-17934540 None:intergenic 30.0%
! ATCTGTATTGATCCAATGAA+AGG + Chr5:17931772-17931791 MsG0580025393.01.T01:intron 30.0%
! CATATCAATTGGTAGCTATA+AGG - Chr5:17934991-17935010 None:intergenic 30.0%
! GGTTTAGATTGTAGATTTTC+CGG - Chr5:17934946-17934965 None:intergenic 30.0%
! TCTCAAGTTTGTTCATATCA+GGG - Chr5:17935557-17935576 None:intergenic 30.0%
! TTACAGTTACGGATTTTGAA+AGG - Chr5:17931494-17931513 None:intergenic 30.0%
! TTATATTAAGGACTTTGAGG+TGG + Chr5:17929963-17929982 MsG0580025393.01.T01:intron 30.0%
! TTCTCAAGTTTGTTCATATC+AGG - Chr5:17935558-17935577 None:intergenic 30.0%
! TTTTGTTACAGGAATATGGA+AGG + Chr5:17933485-17933504 MsG0580025393.01.T01:intron 30.0%
!! AGTAGTCTTATAAAAAGGGA+CGG + Chr5:17934695-17934714 MsG0580025393.01.T01:intron 30.0%
!! GGTTTTGTCATGTAACATAA+AGG + Chr5:17930697-17930716 MsG0580025393.01.T01:intron 30.0%
!! GTCATTGTCCTTGTTATTTA+AGG - Chr5:17935472-17935491 None:intergenic 30.0%
!! TATATTAAGGACTTTGAGGT+GGG + Chr5:17929964-17929983 MsG0580025393.01.T01:intron 30.0%
!! TATTGTGTCGTTGTTGTTTA+AGG - Chr5:17935400-17935419 None:intergenic 30.0%
!!! AATGTTTTCAAGTCTAAGAG+CGG - Chr5:17930286-17930305 None:intergenic 30.0%
!!! GGAATTTCATGTTTTTCAAG+AGG - Chr5:17935432-17935451 None:intergenic 30.0%
!!! TTTTTTACCTCTCACTTTAC+TGG - Chr5:17935101-17935120 None:intergenic 30.0%
AACCCAACAAATGTATCAGT+TGG + Chr5:17935503-17935522 MsG0580025393.01.T01:CDS 35.0%
AAGCAAAAAGGACGAGTAAT+AGG - Chr5:17933034-17933053 None:intergenic 35.0%
ACTAGCTATGAGATGACAAT+TGG - Chr5:17934867-17934886 None:intergenic 35.0%
AGGTAAAACCACAAAAAAGG+AGG - Chr5:17933014-17933033 None:intergenic 35.0%
ATAAGAGCTTAAGAGAGACT+AGG - Chr5:17931523-17931542 None:intergenic 35.0%
ATATGTAGGTCGTTTCTACA+GGG + Chr5:17935210-17935229 MsG0580025393.01.T01:intron 35.0%
ATCTAATGACTAGACACTCA+AGG + Chr5:17934912-17934931 MsG0580025393.01.T01:intron 35.0%
CAAGATTTCTGCACTTTAAG+AGG + Chr5:17931721-17931740 MsG0580025393.01.T01:intron 35.0%
CAATTGTGATCATTCAGTTG+TGG + Chr5:17933137-17933156 MsG0580025393.01.T01:intron 35.0%
CACAGCTACCTTAAATAACA+AGG + Chr5:17935461-17935480 MsG0580025393.01.T01:CDS 35.0%
CTCTTAAGCTCTTATTCACT+TGG + Chr5:17931528-17931547 MsG0580025393.01.T01:intron 35.0%
GAAATCATGAAGCAAAGAGA+GGG + Chr5:17933726-17933745 MsG0580025393.01.T01:CDS 35.0%
GACCATACATCAAAGCAAAA+AGG - Chr5:17933046-17933065 None:intergenic 35.0%
GCAAAGATAATCTTGGAGTA+AGG + Chr5:17934199-17934218 MsG0580025393.01.T01:intron 35.0%
GGGTTATATTAAGGACTTTG+AGG + Chr5:17929960-17929979 MsG0580025393.01.T01:CDS 35.0%
GTACTTGACTAATCATGTTG+AGG + Chr5:17930387-17930406 MsG0580025393.01.T01:intron 35.0%
TAAAACCACAAAAAAGGAGG+AGG - Chr5:17933011-17933030 None:intergenic 35.0%
TAAGAGCTTAAGAGAGACTA+GGG - Chr5:17931522-17931541 None:intergenic 35.0%
TCTAATGACTAGACACTCAA+GGG + Chr5:17934913-17934932 MsG0580025393.01.T01:intron 35.0%
TTGAATACCAGTAAAGTGAG+AGG + Chr5:17935091-17935110 MsG0580025393.01.T01:intron 35.0%
TTTGCTTCATGATTTCCTTC+TGG - Chr5:17933722-17933741 None:intergenic 35.0%
! AGAACTTTTGATGTGATGGT+TGG - Chr5:17934756-17934775 None:intergenic 35.0%
! ATTAGAGTTTGGAATTGCGA+CGG - Chr5:17933639-17933658 None:intergenic 35.0%
! ATTTCTCTTGTTATGCAGGA+GGG - Chr5:17930440-17930459 None:intergenic 35.0%
! CTAGGGTATCTTTACAGTTA+CGG - Chr5:17931505-17931524 None:intergenic 35.0%
! GCAAGTGTTTGCATTGTTTT+GGG + Chr5:17935127-17935146 MsG0580025393.01.T01:intron 35.0%
! GTCCTTTTTGCTTTGATGTA+TGG + Chr5:17933041-17933060 MsG0580025393.01.T01:intron 35.0%
! TATTTCTCTTGTTATGCAGG+AGG - Chr5:17930441-17930460 None:intergenic 35.0%
! TCAATTGGTAGCTATAAGGA+CGG - Chr5:17934987-17935006 None:intergenic 35.0%
! TCTCTATTTCTTTGGCAGTT+TGG - Chr5:17935344-17935363 None:intergenic 35.0%
! TGCAAGTGTTTGCATTGTTT+TGG + Chr5:17935126-17935145 MsG0580025393.01.T01:intron 35.0%
!! TTAATTTGTGGTTGCAGTTG+TGG + Chr5:17933110-17933129 MsG0580025393.01.T01:intron 35.0%
AAAGTTGTGATGCCTCTACT+AGG - Chr5:17931591-17931610 None:intergenic 40.0%
AACGCTTTCTATCACAAGCA+AGG - Chr5:17931694-17931713 None:intergenic 40.0%
ACTTCTCTCCTAATAGAGTG+GGG + Chr5:17934224-17934243 MsG0580025393.01.T01:intron 40.0%
AGGCCAACTGATACATTTGT+TGG - Chr5:17935509-17935528 None:intergenic 40.0%
CAAAAAAGGAGGAGGAAGAT+TGG - Chr5:17933003-17933022 None:intergenic 40.0%
CGCTCTTGAAAAGGAACATA+TGG + Chr5:17932148-17932167 MsG0580025393.01.T01:intron 40.0%
CTATTATCCGTCAACGAAGA+AGG + Chr5:17931551-17931570 MsG0580025393.01.T01:intron 40.0%
CTGTTATCAGTCAACAGAGA+AGG + Chr5:17931640-17931659 MsG0580025393.01.T01:intron 40.0%
GAACAAACCTTCTTCGTTGA+CGG - Chr5:17931561-17931580 None:intergenic 40.0%
GACTTCTCTCCTAATAGAGT+GGG + Chr5:17934223-17934242 MsG0580025393.01.T01:intron 40.0%
GATATGTAGGTCGTTTCTAC+AGG + Chr5:17935209-17935228 MsG0580025393.01.T01:intron 40.0%
GCATGACTAGCAATTTGAGT+TGG - Chr5:17935300-17935319 None:intergenic 40.0%
GGAAATCATGAAGCAAAGAG+AGG + Chr5:17933725-17933744 MsG0580025393.01.T01:CDS 40.0%
GGCCAACTGATACATTTGTT+GGG - Chr5:17935508-17935527 None:intergenic 40.0%
TATGTAGGTCGTTTCTACAG+GGG + Chr5:17935211-17935230 MsG0580025393.01.T01:intron 40.0%
TCAAGTGCGGGGTTATATTA+AGG + Chr5:17929951-17929970 MsG0580025393.01.T01:CDS 40.0%
TCATTCAGTTGTGGTTATCG+CGG + Chr5:17933146-17933165 MsG0580025393.01.T01:intron 40.0%
TGACTAGATTCTCGTAACGT+TGG - Chr5:17930780-17930799 None:intergenic 40.0%
TGACTTCTCTCCTAATAGAG+TGG + Chr5:17934222-17934241 MsG0580025393.01.T01:intron 40.0%
TGTCAAGTATCTCTCGTTGT+TGG - Chr5:17933592-17933611 None:intergenic 40.0%
TGTTCGTTTGAACCTAGTAG+AGG + Chr5:17931576-17931595 MsG0580025393.01.T01:intron 40.0%
! AGTCTTATAAAAAGGGACGG+AGG + Chr5:17934698-17934717 MsG0580025393.01.T01:intron 40.0%
! CTATTTCTTTGGCAGTTTGG+TGG - Chr5:17935341-17935360 None:intergenic 40.0%
! CTCATTTTCTCTCTCATGTC+TGG + Chr5:17932916-17932935 MsG0580025393.01.T01:intron 40.0%
! TAAGGAAAGGGTACATTGGA+CGG + Chr5:17933751-17933770 MsG0580025393.01.T01:CDS 40.0%
! TTTAAGGTAGCTGTGTCTTG+AGG - Chr5:17935456-17935475 None:intergenic 40.0%
! TTTCTCTTGTTATGCAGGAG+GGG - Chr5:17930439-17930458 None:intergenic 40.0%
!! AGTACCGATTGGATAAAGCA+AGG - Chr5:17935529-17935548 None:intergenic 40.0%
!! TCTCTATATCCGGGTTTTGT+TGG - Chr5:17932225-17932244 None:intergenic 40.0%
!! TTGGCCTTGCTTTATCCAAT+CGG + Chr5:17935522-17935541 MsG0580025393.01.T01:CDS 40.0%
!!! AGACACTTGTTTTTGTCTGC+CGG - Chr5:17932745-17932764 None:intergenic 40.0%
!!! ATCTTCCTCCTCCTTTTTTG+TGG + Chr5:17933003-17933022 MsG0580025393.01.T01:intron 40.0%
!!! GGAGTATCAGTTTTGGAGTA+AGG - Chr5:17934346-17934365 None:intergenic 40.0%
AAAAACATGGTAGGGGACGT+TGG + Chr5:17935238-17935257 MsG0580025393.01.T01:CDS 45.0%
AACGTGAGTTAGCTCAAGTG+CGG + Chr5:17929938-17929957 MsG0580025393.01.T01:CDS 45.0%
AATGACTAGACACTCAAGGG+TGG + Chr5:17934916-17934935 MsG0580025393.01.T01:intron 45.0%
AGGGGGTGAAAAAACATGGT+AGG + Chr5:17935229-17935248 MsG0580025393.01.T01:CDS 45.0%
ATGTAGGTCGTTTCTACAGG+GGG + Chr5:17935212-17935231 MsG0580025393.01.T01:intron 45.0%
ATTCCTATAGAAAGGGACGG+AGG - Chr5:17934368-17934387 None:intergenic 45.0%
CAACGTGACTTAACTCACGT+TGG + Chr5:17929907-17929926 MsG0580025393.01.T01:CDS 45.0%
CAACTCATCCCCACTCTATT+AGG - Chr5:17934235-17934254 None:intergenic 45.0%
CACTTGAGCTAACTCACGTT+CGG - Chr5:17929938-17929957 None:intergenic 45.0%
CATACCAGACGCTCTTGAAA+AGG + Chr5:17932139-17932158 MsG0580025393.01.T01:intron 45.0%
CATATGTAATTGCTACCGCG+CGG - Chr5:17933371-17933390 None:intergenic 45.0%
CGCGGTAGCAATTACATATG+TGG + Chr5:17933371-17933390 MsG0580025393.01.T01:intron 45.0%
CTACAGGGGGTGAAAAAACA+TGG + Chr5:17935225-17935244 MsG0580025393.01.T01:CDS 45.0%
GGGGGTGAAAAAACATGGTA+GGG + Chr5:17935230-17935249 MsG0580025393.01.T01:CDS 45.0%
GGGGTGAAAAAACATGGTAG+GGG + Chr5:17935231-17935250 MsG0580025393.01.T01:CDS 45.0%
TGACACTGATGTCGTTGAGT+CGG + Chr5:17933607-17933626 MsG0580025393.01.T01:CDS 45.0%
TTCCTATAGAAAGGGACGGA+GGG - Chr5:17934367-17934386 None:intergenic 45.0%
TTTGTGGTTGCAGTTGTGGT+CGG + Chr5:17933114-17933133 MsG0580025393.01.T01:intron 45.0%
! AAAGAGAGGGCGTAAGGAAA+GGG + Chr5:17933739-17933758 MsG0580025393.01.T01:CDS 45.0%
! AGAGAAGGTTTGTTCGTGTG+AGG + Chr5:17931655-17931674 MsG0580025393.01.T01:intron 45.0%
! CGGAGGGAGTACATTGAAAT+AGG - Chr5:17934505-17934524 None:intergenic 45.0%
! GCGCAACTTGTTCAACTTGT+TGG + Chr5:17935581-17935600 MsG0580025393.01.T01:CDS 45.0%
! TTGGTAGCTATAAGGACGGT+TGG - Chr5:17934983-17935002 None:intergenic 45.0%
!!! CTTTTCAAGAGCGTCTGGTA+TGG - Chr5:17932141-17932160 None:intergenic 45.0%
!!! TGTTCCTTTTCAAGAGCGTC+TGG - Chr5:17932146-17932165 None:intergenic 45.0%
!! AATTAATATATAAAGAATAT+TGG - Chr5:17932896-17932915 None:intergenic 5.0%
!! TCAAAAAATAAATAAATTAA+AGG + Chr5:17932503-17932522 MsG0580025393.01.T01:intron 5.0%
!! TTATCATATTTAATTAATAT+GGG - Chr5:17934529-17934548 None:intergenic 5.0%
!! TTTATCATATTTAATTAATA+TGG - Chr5:17934530-17934549 None:intergenic 5.0%
!!! AAATATTTTAATTTCTATTT+TGG + Chr5:17934000-17934019 MsG0580025393.01.T01:intron 5.0%
!!! AATATATATTTTTATTTTGA+AGG + Chr5:17931269-17931288 MsG0580025393.01.T01:intron 5.0%
!!! AATATTTTAATTTCTATTTT+GGG + Chr5:17934001-17934020 MsG0580025393.01.T01:intron 5.0%
AAGGTAGCTGTGTCTTGAGG+AGG - Chr5:17935453-17935472 None:intergenic 50.0%
ACGTGAGTTAGCTCAAGTGC+GGG + Chr5:17929939-17929958 MsG0580025393.01.T01:CDS 50.0%
GACACTGATGTCGTTGAGTC+GGG + Chr5:17933608-17933627 MsG0580025393.01.T01:CDS 50.0%
GGTTGCGGTGTGTCTACAAT+CGG - Chr5:17933350-17933369 None:intergenic 50.0%
GTTGGTCCATGCTACTCTCA+GGG - Chr5:17933574-17933593 None:intergenic 50.0%
TGCGGTCATCCAACAAAACC+CGG + Chr5:17932213-17932232 MsG0580025393.01.T01:intron 50.0%
TGTTGGTCCATGCTACTCTC+AGG - Chr5:17933575-17933594 None:intergenic 50.0%
TTGGTCCATGCTACTCTCAG+GGG - Chr5:17933573-17933592 None:intergenic 50.0%
! CAAAGAGAGGGCGTAAGGAA+AGG + Chr5:17933738-17933757 MsG0580025393.01.T01:CDS 50.0%
! GAAAGGGTACATTGGACGGA+AGG + Chr5:17933755-17933774 MsG0580025393.01.T01:CDS 50.0%
! GGCGTAAGGAAAGGGTACAT+TGG + Chr5:17933747-17933766 MsG0580025393.01.T01:CDS 50.0%
! TGAAGCAAAGAGAGGGCGTA+AGG + Chr5:17933733-17933752 MsG0580025393.01.T01:CDS 50.0%
!!! GACGGAGGGAGTATCAGTTT+TGG - Chr5:17934353-17934372 None:intergenic 50.0%
AGATCCCCCTGAGAGTAGCA+TGG + Chr5:17933565-17933584 MsG0580025393.01.T01:CDS 55.0%
CAAGCTGAGTCAGTGCCAGA+AGG + Chr5:17933704-17933723 MsG0580025393.01.T01:CDS 55.0%
CGTGAGTTAGCTCAAGTGCG+GGG + Chr5:17929940-17929959 MsG0580025393.01.T01:CDS 55.0%
CTCCCTCCGTCCCTTTCTAT+AGG + Chr5:17934362-17934381 MsG0580025393.01.T01:intron 55.0%
GACACTCAAGGGTGGAGAAC+CGG + Chr5:17934924-17934943 MsG0580025393.01.T01:intron 55.0%
TAATTGCTACCGCGCGGTTG+CGG - Chr5:17933365-17933384 None:intergenic 55.0%
TGGTCCATGCTACTCTCAGG+GGG - Chr5:17933572-17933591 None:intergenic 55.0%
! GAGTTTGGAATTGCGACGGC+AGG - Chr5:17933635-17933654 None:intergenic 55.0%
!! CGGTTGGTCTACATGTGCCT+AGG - Chr5:17934967-17934986 None:intergenic 55.0%
!! TCAGGGAGTGCAGTACCGAT+TGG - Chr5:17935540-17935559 None:intergenic 55.0%
GCGGTGTGTCTACAATCGGC+AGG - Chr5:17933346-17933365 None:intergenic 60.0%
GTAGACACACCGCAACCGCG+CGG + Chr5:17933353-17933372 MsG0580025393.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 17929898 17935617 17929898 ID=MsG0580025393.01;Name=MsG0580025393.01
Chr5 mRNA 17929898 17935617 17929898 ID=MsG0580025393.01.T01;Parent=MsG0580025393.01;Name=MsG0580025393.01.T01;_AED=0.49;_eAED=0.58;_QI=0|0|0|1|1|1|4|0|274
Chr5 exon 17929898 17929981 17929898 ID=MsG0580025393.01.T01:exon:4402;Parent=MsG0580025393.01.T01
Chr5 exon 17930616 17930665 17930616 ID=MsG0580025393.01.T01:exon:4403;Parent=MsG0580025393.01.T01
Chr5 exon 17933496 17933786 17933496 ID=MsG0580025393.01.T01:exon:4404;Parent=MsG0580025393.01.T01
Chr5 exon 17935218 17935617 17935218 ID=MsG0580025393.01.T01:exon:4405;Parent=MsG0580025393.01.T01
Chr5 CDS 17929898 17929981 17929898 ID=MsG0580025393.01.T01:cds;Parent=MsG0580025393.01.T01
Chr5 CDS 17930616 17930665 17930616 ID=MsG0580025393.01.T01:cds;Parent=MsG0580025393.01.T01
Chr5 CDS 17933496 17933786 17933496 ID=MsG0580025393.01.T01:cds;Parent=MsG0580025393.01.T01
Chr5 CDS 17935218 17935617 17935218 ID=MsG0580025393.01.T01:cds;Parent=MsG0580025393.01.T01
Gene Sequence

>MsG0580025393.01.T01

ATGTTGGATCAACGTGACTTAACTCACGTTGGTGCTACCGAACGTGAGTTAGCTCAAGTGCGGGGTTATATTAAGGACTTTGAGAGGCGACACAATGCACGCCTTGTGTTCAATATAGATATAAGGAAAAATAGGAATATGGAAGGAAGAAAAGTTCAACAATTACCTCATCATATTGATCTAAATGAGCGGACTTCAATTCAAGATCCCCCTGAGAGTAGCATGGACCAACAACGAGAGATACTTGACACTGATGTCGTTGAGTCGGGTCCTGCCGTCGCAATTCCAAACTCTAATGATAATAACGTCGCAACTCTAAACTCTAATGATAATAACTTAGTTCAAGCTGAGTCAGTGCCAGAAGGAAATCATGAAGCAAAGAGAGGGCGTAAGGAAAGGGTACATTGGACGGAAGGTGAACATAAGTCGTTTCTACAGGGGGTGAAAAAACATGGTAGGGGACGTTGGAAAGATATTTCAAAAGAATTTGTGCGAACAAAAACTCCAACTCAAATTGCTAGTCATGCTCAAAAATACTTTGTTCACCACCAAACTGCCAAAGAAATAGAGAAGAAGAAAAAGAGAAGAAGTATTCACGACATAACCTTAAACAACAACGACACAATAGTCACTCTCCCTCTTGAAAAACATGAAATTCCTCCTCAAGACACAGCTACCTTAAATAACAAGGACAATGACAACTTGCAACAAACCCAACAAATGTATCAGTTGGCCTTGCTTTATCCAATCGGTACTGCACTCCCTGATATGAACAAACTTGAGAAGATGCGCAACTTGTTCAACTTGTTGGCAAAAGACCTTTGA
Protein sequence

>MsG0580025393.01.T01

MLDQRDLTHVGATERELAQVRGYIKDFERRHNARLVFNIDIRKNRNMEGRKVQQLPHHIDLNERTSIQDPPESSMDQQREILDTDVVESGPAVAIPNSNDNNVATLNSNDNNLVQAESVPEGNHEAKRGRKERVHWTEGEHKSFLQGVKKHGRGRWKDISKEFVRTKTPTQIASHAQKYFVHHQTAKEIEKKKKRRSIHDITLNNNDTIVTLPLEKHEIPPQDTATLNNKDNDNLQQTQQMYQLALLYPIGTALPDMNKLEKMRNLFNLLAKDL*