Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025394.01.T01 | XP_003612667.1 | 89.787 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 3.13E-144 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025394.01.T01 | Q8S9H7 | 38.674 | 181 | 92 | 5 | 30 | 204 | 65 | 232 | 2.02E-25 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025394.01.T01 | G7K885 | 89.787 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 1.50e-144 | 412 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580025394.01.T01 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025394.01.T01 | MTR_5g027570 | 89.787 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 3.79e-148 | 412 |
| MsG0580025394.01.T01 | MTR_5g088060 | 58.657 | 283 | 56 | 7 | 3 | 235 | 190 | 461 | 1.17e-89 | 272 |
| MsG0580025394.01.T01 | MTR_5g488160 | 58.657 | 283 | 56 | 7 | 3 | 235 | 190 | 461 | 1.17e-89 | 272 |
| MsG0580025394.01.T01 | MTR_5g027550 | 60.000 | 245 | 69 | 5 | 3 | 235 | 2 | 229 | 5.60e-87 | 257 |
| MsG0580025394.01.T01 | MTR_5g088010 | 57.647 | 255 | 53 | 4 | 30 | 235 | 1 | 249 | 1.13e-84 | 252 |
| MsG0580025394.01.T01 | MTR_1g111830 | 40.667 | 150 | 71 | 4 | 59 | 204 | 85 | 220 | 4.36e-24 | 96.7 |
| MsG0580025394.01.T01 | MTR_8g063600 | 41.481 | 135 | 67 | 3 | 37 | 169 | 56 | 180 | 9.72e-24 | 96.7 |
| MsG0580025394.01.T01 | MTR_5g081860 | 36.571 | 175 | 93 | 4 | 30 | 193 | 66 | 233 | 9.42e-23 | 94.0 |
| MsG0580025394.01.T01 | MTR_4g111975 | 31.707 | 205 | 107 | 6 | 29 | 206 | 45 | 243 | 3.04e-22 | 93.2 |
| MsG0580025394.01.T01 | MTR_3g462790 | 54.321 | 81 | 34 | 2 | 85 | 164 | 137 | 215 | 4.62e-21 | 90.1 |
| MsG0580025394.01.T01 | MTR_7g067080 | 41.732 | 127 | 61 | 4 | 84 | 208 | 129 | 244 | 5.64e-21 | 89.7 |
| MsG0580025394.01.T01 | MTR_5g069710 | 54.321 | 81 | 34 | 2 | 85 | 164 | 122 | 200 | 8.66e-21 | 89.4 |
| MsG0580025394.01.T01 | MTR_8g063870 | 53.333 | 75 | 35 | 0 | 95 | 169 | 92 | 166 | 9.15e-21 | 88.6 |
| MsG0580025394.01.T01 | MTR_4g100630 | 37.931 | 116 | 68 | 3 | 45 | 160 | 47 | 158 | 1.43e-20 | 89.0 |
| MsG0580025394.01.T01 | MTR_2g100930 | 51.389 | 72 | 33 | 1 | 91 | 162 | 105 | 174 | 9.82e-20 | 87.0 |
| MsG0580025394.01.T01 | MTR_3g104370 | 47.727 | 88 | 41 | 2 | 85 | 171 | 85 | 168 | 3.62e-19 | 83.6 |
| MsG0580025394.01.T01 | MTR_1g048660 | 52.857 | 70 | 31 | 1 | 97 | 166 | 14 | 81 | 4.07e-18 | 77.0 |
| MsG0580025394.01.T01 | MTR_6g092540 | 51.429 | 70 | 32 | 1 | 91 | 160 | 93 | 160 | 5.69e-18 | 81.3 |
| MsG0580025394.01.T01 | MTR_8g101650 | 50.000 | 70 | 32 | 1 | 91 | 160 | 101 | 167 | 3.14e-17 | 79.0 |
| MsG0580025394.01.T01 | MTR_4g107230 | 53.846 | 65 | 29 | 1 | 78 | 141 | 66 | 130 | 3.29e-17 | 79.0 |
| MsG0580025394.01.T01 | MTR_5g037080 | 50.617 | 81 | 32 | 2 | 66 | 142 | 73 | 149 | 7.55e-17 | 78.6 |
| MsG0580025394.01.T01 | MTR_5g075760 | 50.000 | 88 | 38 | 3 | 96 | 182 | 106 | 188 | 3.75e-16 | 75.1 |
| MsG0580025394.01.T01 | MTR_5g075790 | 48.864 | 88 | 39 | 3 | 96 | 182 | 114 | 196 | 1.23e-14 | 70.9 |
| MsG0580025394.01.T01 | MTR_4g015130 | 50.847 | 59 | 27 | 1 | 105 | 163 | 3 | 59 | 1.54e-14 | 67.4 |
| MsG0580025394.01.T01 | MTR_0036s0260 | 37.975 | 79 | 47 | 1 | 95 | 173 | 28 | 104 | 2.30e-14 | 69.7 |
| MsG0580025394.01.T01 | MTR_1g033620 | 50.000 | 62 | 29 | 1 | 110 | 171 | 20 | 79 | 5.60e-14 | 69.3 |
| MsG0580025394.01.T01 | MTR_8g072990 | 46.269 | 67 | 36 | 0 | 90 | 156 | 95 | 161 | 6.16e-14 | 69.3 |
| MsG0580025394.01.T01 | MTR_1g083180 | 46.753 | 77 | 39 | 2 | 94 | 169 | 60 | 135 | 7.38e-14 | 68.2 |
| MsG0580025394.01.T01 | MTR_2g090305 | 34.343 | 99 | 61 | 2 | 95 | 191 | 28 | 124 | 2.86e-13 | 66.6 |
| MsG0580025394.01.T01 | MTR_6g043490 | 41.558 | 77 | 42 | 1 | 92 | 165 | 104 | 180 | 1.08e-12 | 65.9 |
| MsG0580025394.01.T01 | MTR_3g070110 | 47.500 | 80 | 34 | 3 | 96 | 168 | 96 | 174 | 1.27e-12 | 65.1 |
| MsG0580025394.01.T01 | MTR_6g043480 | 42.647 | 68 | 36 | 1 | 90 | 154 | 102 | 169 | 3.82e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025394.01.T01 | AT5G08520 | 41.935 | 124 | 58 | 2 | 60 | 171 | 71 | 192 | 2.62e-23 | 95.9 |
| MsG0580025394.01.T01 | AT5G23650 | 38.961 | 154 | 81 | 4 | 64 | 217 | 92 | 232 | 5.32e-22 | 92.8 |
| MsG0580025394.01.T01 | AT5G04760 | 52.500 | 80 | 36 | 1 | 83 | 162 | 87 | 164 | 6.01e-22 | 90.5 |
| MsG0580025394.01.T01 | AT3G10580 | 31.551 | 187 | 103 | 5 | 22 | 206 | 39 | 202 | 7.93e-22 | 91.3 |
| MsG0580025394.01.T01 | AT5G58900 | 57.333 | 75 | 29 | 2 | 91 | 164 | 137 | 209 | 1.42e-21 | 90.9 |
| MsG0580025394.01.T01 | AT3G10580 | 37.121 | 132 | 73 | 4 | 79 | 206 | 77 | 202 | 1.53e-21 | 90.9 |
| MsG0580025394.01.T01 | AT3G11280 | 40.152 | 132 | 71 | 3 | 81 | 206 | 113 | 242 | 2.32e-21 | 90.1 |
| MsG0580025394.01.T01 | AT3G11280 | 40.152 | 132 | 71 | 3 | 81 | 206 | 113 | 242 | 2.32e-21 | 90.1 |
| MsG0580025394.01.T01 | AT1G49010 | 48.837 | 86 | 41 | 2 | 87 | 171 | 126 | 209 | 2.47e-21 | 90.9 |
| MsG0580025394.01.T01 | AT2G38090 | 51.220 | 82 | 37 | 2 | 84 | 164 | 130 | 209 | 4.13e-20 | 87.4 |
| MsG0580025394.01.T01 | AT5G47390 | 45.455 | 99 | 47 | 3 | 84 | 181 | 89 | 181 | 6.82e-20 | 87.4 |
| MsG0580025394.01.T01 | AT5G61620 | 53.750 | 80 | 31 | 2 | 84 | 163 | 101 | 174 | 1.48e-19 | 85.9 |
| MsG0580025394.01.T01 | AT5G05790 | 48.352 | 91 | 41 | 2 | 80 | 166 | 116 | 204 | 3.61e-19 | 84.3 |
| MsG0580025394.01.T01 | AT5G05790 | 48.352 | 91 | 41 | 2 | 80 | 166 | 116 | 204 | 3.61e-19 | 84.3 |
| MsG0580025394.01.T01 | AT5G01200 | 53.333 | 75 | 32 | 2 | 91 | 164 | 142 | 214 | 4.44e-19 | 84.0 |
| MsG0580025394.01.T01 | AT5G56840 | 50.000 | 70 | 34 | 1 | 91 | 160 | 87 | 155 | 3.25e-17 | 78.2 |
| MsG0580025394.01.T01 | AT1G74840 | 50.000 | 76 | 34 | 1 | 66 | 141 | 71 | 142 | 8.09e-17 | 77.4 |
| MsG0580025394.01.T01 | AT1G74840 | 50.000 | 76 | 34 | 1 | 66 | 141 | 71 | 142 | 9.26e-17 | 77.4 |
| MsG0580025394.01.T01 | AT3G16350 | 51.351 | 74 | 34 | 2 | 70 | 142 | 112 | 184 | 1.15e-16 | 78.6 |
| MsG0580025394.01.T01 | AT1G19000 | 61.538 | 52 | 20 | 0 | 90 | 141 | 97 | 148 | 1.98e-16 | 77.0 |
| MsG0580025394.01.T01 | AT1G19000 | 61.538 | 52 | 20 | 0 | 90 | 141 | 97 | 148 | 1.98e-16 | 77.0 |
| MsG0580025394.01.T01 | AT1G70000 | 58.621 | 58 | 20 | 1 | 85 | 142 | 92 | 145 | 2.83e-16 | 76.3 |
| MsG0580025394.01.T01 | AT1G70000 | 58.621 | 58 | 20 | 1 | 85 | 142 | 92 | 145 | 2.83e-16 | 76.3 |
| MsG0580025394.01.T01 | AT4G09450 | 48.649 | 74 | 36 | 1 | 90 | 163 | 86 | 157 | 9.59e-16 | 73.6 |
| MsG0580025394.01.T01 | AT3G10590 | 45.455 | 88 | 43 | 2 | 78 | 163 | 92 | 176 | 3.84e-14 | 69.3 |
Find 43 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTACATCTTTCACATTT+TGG | 0.117923 | 5:-17955561 | None:intergenic |
| TGAGAAGATGCGCGACTTAT+TGG | 0.189075 | 5:+17955804 | MsG0580025394.01.T01:CDS |
| TGTGATGTATAGGTTGTTTC+TGG | 0.210646 | 5:+17955429 | MsG0580025394.01.T01:intron |
| TCCAATCGGTTCTACAATTC+CGG | 0.270420 | 5:+17955768 | MsG0580025394.01.T01:CDS |
| TTAGCTTCATTACTTCCTTC+AGG | 0.334459 | 5:-17954675 | None:intergenic |
| TTTGCTTCACGACTTCCTTC+TGG | 0.354439 | 5:-17954720 | None:intergenic |
| TTCTCAAGTTTCTCTATATC+CGG | 0.389268 | 5:-17955787 | None:intergenic |
| GCATGGCTAGCAATTTGAAT+TGG | 0.406712 | 5:-17955520 | None:intergenic |
| TGGAAGGAATCTCATCTTGT+TGG | 0.427279 | 5:-17955657 | None:intergenic |
| TTGTGCTTGCTTTGTCCAAT+CGG | 0.442636 | 5:+17955754 | MsG0580025394.01.T01:CDS |
| AGATATTTCAAAAGAATTTG+TGG | 0.448838 | 5:+17955486 | MsG0580025394.01.T01:CDS |
| TTCACGACTTCCTTCTGGTA+CGG | 0.484099 | 5:-17954715 | None:intergenic |
| CAAAGAGAGGGCGTAGGGAA+AGG | 0.497543 | 5:+17954739 | MsG0580025394.01.T01:CDS |
| AAAGAGAGGGCGTAGGGAAA+GGG | 0.499642 | 5:+17954740 | MsG0580025394.01.T01:CDS |
| ATCATTAGAGTTTAGAATTG+CGG | 0.501416 | 5:-17954625 | None:intergenic |
| TGTTATAGGAACATGGAAGA+AGG | 0.512958 | 5:+17954468 | None:intergenic |
| GGAAGTAATGAAGCTAACTT+AGG | 0.518501 | 5:+17954681 | MsG0580025394.01.T01:CDS |
| GATACAAGCTTAAACAAGAA+TGG | 0.522087 | 5:+17955610 | MsG0580025394.01.T01:CDS |
| ATGTGAAAGATGTAGAGAAG+AGG | 0.526828 | 5:+17955566 | MsG0580025394.01.T01:CDS |
| TGTATAGGTTGTTTCTGGAG+GGG | 0.528745 | 5:+17955434 | MsG0580025394.01.T01:intron |
| TGTTCCATGCTATTCTCAGA+GGG | 0.542367 | 5:-17954552 | None:intergenic |
| ATGTATAGGTTGTTTCTGGA+GGG | 0.542704 | 5:+17955433 | MsG0580025394.01.T01:intron |
| GTCTGTTGCATTCCTTGAGG+AGG | 0.550846 | 5:-17955700 | None:intergenic |
| TTGTTCCATGCTATTCTCAG+AGG | 0.560192 | 5:-17954553 | None:intergenic |
| TAGGGAAAGGGTACATTGGA+CGG | 0.560493 | 5:+17954752 | MsG0580025394.01.T01:CDS |
| TCCGGAATTGTAGAACCGAT+TGG | 0.561152 | 5:-17955769 | None:intergenic |
| GTGAAGCAAAGAGAGGGCGT+AGG | 0.568855 | 5:+17954733 | MsG0580025394.01.T01:CDS |
| GGCGTAGGGAAAGGGTACAT+TGG | 0.572735 | 5:+17954748 | MsG0580025394.01.T01:CDS |
| GAAAGGGTACATTGGACGGA+AGG | 0.584172 | 5:+17954756 | MsG0580025394.01.T01:CDS |
| CAAAATGAAACTCCTCCTCA+AGG | 0.584892 | 5:+17955688 | MsG0580025394.01.T01:CDS |
| GGACAAAGCAAGCACAACAT+AGG | 0.584982 | 5:-17955748 | None:intergenic |
| TGAAGCAAAGAGAGGGCGTA+GGG | 0.595570 | 5:+17954734 | MsG0580025394.01.T01:CDS |
| CAAGCTGAGTCCGTACCAGA+AGG | 0.598531 | 5:+17954705 | MsG0580025394.01.T01:CDS |
| GATGTATAGGTTGTTTCTGG+AGG | 0.607647 | 5:+17955432 | MsG0580025394.01.T01:intron |
| CAAGCTGAGTCAGTACCTGA+AGG | 0.616539 | 5:+17954660 | MsG0580025394.01.T01:CDS |
| CGACACTGATGTCATTGAGT+CGG | 0.619037 | 5:+17954593 | MsG0580025394.01.T01:CDS |
| AGATCCCTCTGAGAATAGCA+TGG | 0.623635 | 5:+17954548 | MsG0580025394.01.T01:CDS |
| ATCATATCGATTTAAATGAG+CGG | 0.624082 | 5:+17954514 | MsG0580025394.01.T01:CDS |
| TCATTTAAATCGATATGATG+AGG | 0.628741 | 5:-17954510 | None:intergenic |
| GGAAGTCGTGAAGCAAAGAG+AGG | 0.632062 | 5:+17954726 | MsG0580025394.01.T01:CDS |
| GAAGTCGTGAAGCAAAGAGA+GGG | 0.647998 | 5:+17954727 | MsG0580025394.01.T01:CDS |
| ATTAGAGTTTAGAATTGCGG+CGG | 0.650972 | 5:-17954622 | None:intergenic |
| TGTGTCTGTTGCATTCCTTG+AGG | 0.673315 | 5:-17955703 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTAAATATATATCAAT+TGG | - | Chr5:17955127-17955146 | None:intergenic | 10.0% |
| !! | TAGAATTGAAAAAAAAAATA+TGG | - | Chr5:17955011-17955030 | None:intergenic | 10.0% |
| !!! | TTTTTTTTCAATTCTATTTT+AGG | + | Chr5:17955015-17955034 | MsG0580025394.01.T01:intron | 10.0% |
| !! | AAAATATATATCACTTCCAA+AGG | - | Chr5:17954808-17954827 | None:intergenic | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | + | Chr5:17955486-17955505 | MsG0580025394.01.T01:CDS | 20.0% |
| !!! | AAAAACTTAGTTGTTTTGAA+TGG | + | Chr5:17954946-17954965 | MsG0580025394.01.T01:intron | 20.0% |
| !!! | TACAAATGGAAATTTTGTTT+TGG | + | Chr5:17954873-17954892 | MsG0580025394.01.T01:intron | 20.0% |
| !!! | TGGAAGTGATATATATTTTT+TGG | + | Chr5:17954809-17954828 | MsG0580025394.01.T01:intron | 20.0% |
| !!! | TTCTATAATTTGTGATGTAT+AGG | + | Chr5:17955419-17955438 | MsG0580025394.01.T01:intron | 20.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | + | Chr5:17955252-17955271 | MsG0580025394.01.T01:intron | 25.0% |
| ! | ATGATTAAGGAATGTACAAA+TGG | + | Chr5:17954859-17954878 | MsG0580025394.01.T01:intron | 25.0% |
| ! | TAAGTATTCAATCTATCCTT+TGG | + | Chr5:17954789-17954808 | MsG0580025394.01.T01:intron | 25.0% |
| ! | TCATTTAAATCGATATGATG+AGG | - | Chr5:17954513-17954532 | None:intergenic | 25.0% |
| !! | ATCATTAGAGTTTAGAATTG+CGG | - | Chr5:17954628-17954647 | None:intergenic | 25.0% |
| !!! | ATCATATCGATTTAAATGAG+CGG | + | Chr5:17954514-17954533 | MsG0580025394.01.T01:CDS | 25.0% |
| !!! | TTGGTGGATAAAGAATTTTT+GGG | - | Chr5:17955545-17955564 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGAATTTT+TGG | - | Chr5:17955546-17955565 | None:intergenic | 25.0% |
| GATACAAGCTTAAACAAGAA+TGG | + | Chr5:17955610-17955629 | MsG0580025394.01.T01:CDS | 30.0% | |
| TTCTCAAGTTTCTCTATATC+CGG | - | Chr5:17955790-17955809 | None:intergenic | 30.0% | |
| ! | TCAAGTGTTTGCATTGTTTT+GGG | + | Chr5:17955312-17955331 | MsG0580025394.01.T01:intron | 30.0% |
| ! | TCTCTACATCTTTCACATTT+TGG | - | Chr5:17955564-17955583 | None:intergenic | 30.0% |
| ! | TTCAAGTGTTTGCATTGTTT+TGG | + | Chr5:17955311-17955330 | MsG0580025394.01.T01:intron | 30.0% |
| !! | AGTTTCATTTTGCTGCTTAA+TGG | - | Chr5:17955680-17955699 | None:intergenic | 30.0% |
| AATGTTAACTAGTGTCCCAA+GGG | - | Chr5:17954982-17955001 | None:intergenic | 35.0% | |
| ATGTGAAAGATGTAGAGAAG+AGG | + | Chr5:17955566-17955585 | MsG0580025394.01.T01:CDS | 35.0% | |
| ATTCCTTAATCATTGCCCTA+AGG | - | Chr5:17954852-17954871 | None:intergenic | 35.0% | |
| GGAAGTAATGAAGCTAACTT+AGG | + | Chr5:17954681-17954700 | MsG0580025394.01.T01:CDS | 35.0% | |
| TAATGTTAACTAGTGTCCCA+AGG | - | Chr5:17954983-17955002 | None:intergenic | 35.0% | |
| TTAGCTTCATTACTTCCTTC+AGG | - | Chr5:17954678-17954697 | None:intergenic | 35.0% | |
| TTCCTTAATCATTGCCCTAA+GGG | - | Chr5:17954851-17954870 | None:intergenic | 35.0% | |
| ! | ATTAGAGTTTAGAATTGCGG+CGG | - | Chr5:17954625-17954644 | None:intergenic | 35.0% |
| ! | CTACATCTTTCACATTTTGG+TGG | - | Chr5:17955561-17955580 | None:intergenic | 35.0% |
| ! | TGTGATGTATAGGTTGTTTC+TGG | + | Chr5:17955429-17955448 | MsG0580025394.01.T01:intron | 35.0% |
| !! | ATGTATAGGTTGTTTCTGGA+GGG | + | Chr5:17955433-17955452 | MsG0580025394.01.T01:intron | 35.0% |
| !! | GGATAAAGAATTTTTGGGCA+TGG | - | Chr5:17955540-17955559 | None:intergenic | 35.0% |
| !! | TCATTTTGCTGCTTAATGGA+AGG | - | Chr5:17955676-17955695 | None:intergenic | 35.0% |
| AATGGTTAACCAATGCCCTT+GGG | + | Chr5:17954964-17954983 | MsG0580025394.01.T01:intron | 40.0% | |
| CAAAATGAAACTCCTCCTCA+AGG | + | Chr5:17955688-17955707 | MsG0580025394.01.T01:CDS | 40.0% | |
| GCATGGCTAGCAATTTGAAT+TGG | - | Chr5:17955523-17955542 | None:intergenic | 40.0% | |
| TGGAAGGAATCTCATCTTGT+TGG | - | Chr5:17955660-17955679 | None:intergenic | 40.0% | |
| TGTTCCATGCTATTCTCAGA+GGG | - | Chr5:17954555-17954574 | None:intergenic | 40.0% | |
| TTGTGCTTGCTTTGTCCAAT+CGG | + | Chr5:17955754-17955773 | MsG0580025394.01.T01:CDS | 40.0% | |
| TTGTTCCATGCTATTCTCAG+AGG | - | Chr5:17954556-17954575 | None:intergenic | 40.0% | |
| ! | TCCAATCGGTTCTACAATTC+CGG | + | Chr5:17955768-17955787 | MsG0580025394.01.T01:CDS | 40.0% |
| !! | GATGTATAGGTTGTTTCTGG+AGG | + | Chr5:17955432-17955451 | MsG0580025394.01.T01:intron | 40.0% |
| !! | TGTATAGGTTGTTTCTGGAG+GGG | + | Chr5:17955434-17955453 | MsG0580025394.01.T01:intron | 40.0% |
| AAAAACATGGTAGGGGACGT+TGG | + | Chr5:17955461-17955480 | MsG0580025394.01.T01:CDS | 45.0% | |
| AGGGGCTTGAAAAACATGGT+AGG | + | Chr5:17955452-17955471 | MsG0580025394.01.T01:CDS | 45.0% | |
| CGACACTGATGTCATTGAGT+CGG | + | Chr5:17954593-17954612 | MsG0580025394.01.T01:CDS | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+GGG | + | Chr5:17954727-17954746 | MsG0580025394.01.T01:CDS | 45.0% | |
| GAATGGTTAACCAATGCCCT+TGG | + | Chr5:17954963-17954982 | MsG0580025394.01.T01:intron | 45.0% | |
| GGACAAAGCAAGCACAACAT+AGG | - | Chr5:17955751-17955770 | None:intergenic | 45.0% | |
| GGGCTTGAAAAACATGGTAG+GGG | + | Chr5:17955454-17955473 | MsG0580025394.01.T01:CDS | 45.0% | |
| GGGGCTTGAAAAACATGGTA+GGG | + | Chr5:17955453-17955472 | MsG0580025394.01.T01:CDS | 45.0% | |
| TCCGGAATTGTAGAACCGAT+TGG | - | Chr5:17955772-17955791 | None:intergenic | 45.0% | |
| TGAGAAGATGCGCGACTTAT+TGG | + | Chr5:17955804-17955823 | MsG0580025394.01.T01:CDS | 45.0% | |
| TGCCCTTAGGGCAATGATTA+AGG | + | Chr5:17954846-17954865 | MsG0580025394.01.T01:intron | 45.0% | |
| TGTGTCTGTTGCATTCCTTG+AGG | - | Chr5:17955706-17955725 | None:intergenic | 45.0% | |
| TTCACGACTTCCTTCTGGTA+CGG | - | Chr5:17954718-17954737 | None:intergenic | 45.0% | |
| TTTGCTTCACGACTTCCTTC+TGG | - | Chr5:17954723-17954742 | None:intergenic | 45.0% | |
| ! | AGATCCCTCTGAGAATAGCA+TGG | + | Chr5:17954548-17954567 | MsG0580025394.01.T01:CDS | 45.0% |
| ! | TAGGGAAAGGGTACATTGGA+CGG | + | Chr5:17954752-17954771 | MsG0580025394.01.T01:CDS | 45.0% |
| CAAGCTGAGTCAGTACCTGA+AGG | + | Chr5:17954660-17954679 | MsG0580025394.01.T01:CDS | 50.0% | |
| CTGGAGGGGCTTGAAAAACA+TGG | + | Chr5:17955448-17955467 | MsG0580025394.01.T01:CDS | 50.0% | |
| GGAAGTCGTGAAGCAAAGAG+AGG | + | Chr5:17954726-17954745 | MsG0580025394.01.T01:CDS | 50.0% | |
| GTCTGTTGCATTCCTTGAGG+AGG | - | Chr5:17955703-17955722 | None:intergenic | 50.0% | |
| ! | AAAGAGAGGGCGTAGGGAAA+GGG | + | Chr5:17954740-17954759 | MsG0580025394.01.T01:CDS | 50.0% |
| ! | AACTAGTGTCCCAAGGGCAT+TGG | - | Chr5:17954976-17954995 | None:intergenic | 50.0% |
| ! | AATCATTGCCCTAAGGGCAC+TGG | - | Chr5:17954845-17954864 | None:intergenic | 50.0% |
| ! | GAAAGGGTACATTGGACGGA+AGG | + | Chr5:17954756-17954775 | MsG0580025394.01.T01:CDS | 50.0% |
| ! | TGAAGCAAAGAGAGGGCGTA+GGG | + | Chr5:17954734-17954753 | MsG0580025394.01.T01:CDS | 50.0% |
| CAAGCTGAGTCCGTACCAGA+AGG | + | Chr5:17954705-17954724 | MsG0580025394.01.T01:CDS | 55.0% | |
| CTTGCCAACCAGTGCCCTTA+GGG | + | Chr5:17954834-17954853 | MsG0580025394.01.T01:intron | 55.0% | |
| TCTTGCCAACCAGTGCCCTT+AGG | + | Chr5:17954833-17954852 | MsG0580025394.01.T01:intron | 55.0% | |
| ! | CAAAGAGAGGGCGTAGGGAA+AGG | + | Chr5:17954739-17954758 | MsG0580025394.01.T01:CDS | 55.0% |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | + | Chr5:17954748-17954767 | MsG0580025394.01.T01:CDS | 55.0% |
| ! | GTGAAGCAAAGAGAGGGCGT+AGG | + | Chr5:17954733-17954752 | MsG0580025394.01.T01:CDS | 55.0% |
| !! | ATTGCCCTAAGGGCACTGGT+TGG | - | Chr5:17954841-17954860 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 17954480 | 17955846 | 17954480 | ID=MsG0580025394.01;Name=MsG0580025394.01 |
| Chr5 | mRNA | 17954480 | 17955846 | 17954480 | ID=MsG0580025394.01.T01;Parent=MsG0580025394.01;Name=MsG0580025394.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0|0|1|1|1|2|0|237 |
| Chr5 | exon | 17954480 | 17954787 | 17954480 | ID=MsG0580025394.01.T01:exon:4406;Parent=MsG0580025394.01.T01 |
| Chr5 | exon | 17955441 | 17955846 | 17955441 | ID=MsG0580025394.01.T01:exon:4407;Parent=MsG0580025394.01.T01 |
| Chr5 | CDS | 17954480 | 17954787 | 17954480 | ID=MsG0580025394.01.T01:cds;Parent=MsG0580025394.01.T01 |
| Chr5 | CDS | 17955441 | 17955846 | 17955441 | ID=MsG0580025394.01.T01:cds;Parent=MsG0580025394.01.T01 |
| Gene Sequence |
| Protein sequence |
