AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026626.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026626.01.T01 MTR_4g119600 79.008 262 47 3 1 255 1 261 1.13e-148 419
MsG0580026626.01.T01 MTR_8g103800 72.549 255 46 2 1 255 1 231 3.57e-127 362
MsG0580026626.01.T01 MTR_6g075990 77.293 229 44 2 1 222 19 246 2.74e-125 357
MsG0580026626.01.T01 MTR_4g057975 79.000 200 42 0 1 200 1 200 9.11e-114 325
MsG0580026626.01.T01 MTR_8g095070 64.981 257 52 5 1 251 1 225 8.67e-108 312
MsG0580026626.01.T01 MTR_8g107490 77.273 198 30 2 58 255 44 226 1.61e-107 313
MsG0580026626.01.T01 MTR_3g067290 74.648 213 35 2 1 213 28 221 6.52e-103 298
MsG0580026626.01.T01 MTR_5g031650 76.963 191 36 2 12 195 34 223 3.57e-102 297
MsG0580026626.01.T01 MTR_1g098990 65.198 227 40 3 1 220 1 195 4.25e-96 283
MsG0580026626.01.T01 MTR_8g009330 73.370 184 41 3 1 178 24 205 5.85e-89 263
MsG0580026626.01.T01 MTR_8g020433 58.039 255 61 4 1 255 1 209 4.88e-88 269
MsG0580026626.01.T01 MTR_0116s0050 67.000 200 33 2 20 218 4 171 5.67e-88 259
MsG0580026626.01.T01 MTR_1g052890 85.039 127 19 0 131 257 1 127 1.48e-74 230
MsG0580026626.01.T01 MTR_2g096070 66.162 198 22 3 58 255 83 235 3.17e-74 241
MsG0580026626.01.T01 MTR_5g046245 69.466 131 40 0 129 259 5 135 2.48e-61 193
MsG0580026626.01.T01 MTR_5g046245 69.565 69 21 0 122 190 142 210 9.22e-27 104
MsG0580026626.01.T01 MTR_3g015530 48.035 229 92 4 16 232 1 214 1.24e-60 192
MsG0580026626.01.T01 MTR_8g463940 66.187 139 41 1 1 133 31 169 1.62e-58 184
MsG0580026626.01.T01 MTR_7g060350 55.051 198 61 4 1 192 1 176 1.09e-57 182
MsG0580026626.01.T01 MTR_6g018990 59.524 168 29 3 1 161 1 136 3.55e-57 179
MsG0580026626.01.T01 MTR_0341s0040 72.727 121 26 2 1 114 1 121 6.19e-56 176
MsG0580026626.01.T01 MTR_3g077875 47.030 202 103 2 33 233 61 259 1.98e-55 180
MsG0580026626.01.T01 MTR_4g057300 56.604 159 68 1 97 255 1 158 3.89e-55 181
MsG0580026626.01.T01 MTR_5g018790 90.000 100 10 0 156 255 1 100 3.99e-55 189
MsG0580026626.01.T01 MTR_0219s0080 65.414 133 41 1 1 128 1 133 1.22e-54 172
MsG0580026626.01.T01 MTR_6g037570 69.444 144 36 3 1 137 16 158 2.88e-54 176
MsG0580026626.01.T01 MTR_6g019000 71.901 121 27 2 1 114 1 121 1.61e-53 169
MsG0580026626.01.T01 MTR_3g110070 72.500 120 26 2 1 113 1 120 1.62e-53 170
MsG0580026626.01.T01 MTR_2g026605 69.919 123 30 2 1 116 1 123 7.34e-53 168
MsG0580026626.01.T01 MTR_3g072200 49.083 218 95 5 2 218 8 210 7.69e-53 180
MsG0580026626.01.T01 MTR_5g006100 42.085 259 144 3 1 255 1 257 1.06e-52 182
MsG0580026626.01.T01 MTR_2g030885 65.926 135 40 1 1 129 1 135 2.06e-52 179
MsG0580026626.01.T01 MTR_0340s0010 71.074 121 28 2 1 114 43 163 2.46e-52 168
MsG0580026626.01.T01 MTR_3g434990 68.033 122 31 3 1 114 15 136 2.12e-49 160
MsG0580026626.01.T01 MTR_3g462670 41.102 236 101 2 1 236 1 198 9.27e-49 160
MsG0580026626.01.T01 MTR_2g026585 41.102 236 105 4 2 233 8 213 3.94e-48 164
MsG0580026626.01.T01 MTR_8g059020 71.429 112 25 2 1 105 92 203 6.83e-48 159
MsG0580026626.01.T01 MTR_3g467720 90.909 77 7 0 137 213 63 139 2.86e-45 149
MsG0580026626.01.T01 MTR_3g467720 75.000 56 14 0 1 56 7 62 1.52e-21 87.8
MsG0580026626.01.T01 MTR_0156s0040 48.765 162 82 1 97 257 1 162 8.86e-45 149
MsG0580026626.01.T01 MTR_5g046160 41.905 210 106 2 45 254 32 225 5.30e-44 149
MsG0580026626.01.T01 MTR_1g081740 41.784 213 90 3 2 210 7 189 8.96e-43 144
MsG0580026626.01.T01 MTR_6g089230 47.799 159 64 2 94 252 20 159 1.36e-40 140
MsG0580026626.01.T01 MTR_4g120790 38.034 234 105 5 20 245 24 225 1.01e-39 137
MsG0580026626.01.T01 MTR_3g087440 46.707 167 85 2 33 198 61 224 1.84e-39 137
MsG0580026626.01.T01 MTR_2g105460 72.449 98 27 0 3 100 40 137 3.01e-39 144
MsG0580026626.01.T01 MTR_2g105460 85.000 40 6 0 218 257 138 177 3.18e-15 75.5
MsG0580026626.01.T01 MTR_4g051612 70.213 94 22 1 27 114 43 136 3.05e-39 135
MsG0580026626.01.T01 MTR_8g038805 43.333 180 52 5 1 178 1 132 4.17e-39 133
MsG0580026626.01.T01 MTR_6g007833 70.103 97 23 1 1 91 1 97 2.08e-38 133
MsG0580026626.01.T01 MTR_1g058140 55.462 119 53 0 112 230 88 206 3.44e-38 134
MsG0580026626.01.T01 MTR_2g067930 54.545 143 63 2 80 221 55 196 3.53e-38 132
MsG0580026626.01.T01 MTR_4g051638 48.667 150 71 3 25 169 91 239 5.03e-38 134
MsG0580026626.01.T01 MTR_3g034840 39.623 212 110 7 1 195 1 211 8.59e-38 132
MsG0580026626.01.T01 MTR_0599s0020 39.623 212 110 7 1 195 1 211 8.59e-38 132
MsG0580026626.01.T01 MTR_5g098640 58.772 114 41 1 1 108 1 114 9.84e-38 131
MsG0580026626.01.T01 MTR_2g067720 69.792 96 23 2 20 114 26 116 2.90e-37 128
MsG0580026626.01.T01 MTR_7g065910 43.114 167 85 2 90 255 26 183 1.26e-35 130
MsG0580026626.01.T01 MTR_7g050385 47.712 153 73 4 25 172 82 232 1.54e-35 127
MsG0580026626.01.T01 MTR_5g060540 42.328 189 78 3 23 206 8 170 1.77e-35 130
MsG0580026626.01.T01 MTR_6g464570 46.429 140 66 4 49 182 10 146 1.85e-35 124
MsG0580026626.01.T01 MTR_8g445570 61.165 103 39 1 120 222 5 106 2.00e-34 120
MsG0580026626.01.T01 MTR_3g030230 59.615 104 41 1 95 198 69 171 9.77e-34 120
MsG0580026626.01.T01 MTR_8g028020 53.704 108 50 0 147 254 1 108 1.47e-32 116
MsG0580026626.01.T01 MTR_7g106560 55.556 108 48 0 129 236 91 198 4.09e-32 117
MsG0580026626.01.T01 MTR_7g010970 41.935 155 60 3 102 255 6 131 7.16e-32 117
MsG0580026626.01.T01 MTR_7g050365 51.145 131 39 2 103 233 20 125 8.09e-32 116
MsG0580026626.01.T01 MTR_1g012760 35.602 191 117 3 34 223 16 201 2.14e-31 117
MsG0580026626.01.T01 MTR_1g012760 35.602 191 117 3 34 223 27 212 3.44e-31 117
MsG0580026626.01.T01 MTR_6g026910 42.308 156 53 2 100 255 60 178 2.83e-30 114
MsG0580026626.01.T01 MTR_4g100470 41.558 154 76 3 100 252 59 199 8.43e-30 111
MsG0580026626.01.T01 MTR_5g079560 40.223 179 99 4 33 206 57 232 3.08e-29 110
MsG0580026626.01.T01 MTR_1g059880 40.385 156 67 3 2 156 44 174 2.12e-28 107
MsG0580026626.01.T01 MTR_3g437000 46.774 124 62 3 13 135 3 123 3.95e-28 104
MsG0580026626.01.T01 MTR_6g090600 51.456 103 49 1 71 173 1 102 5.94e-28 103
MsG0580026626.01.T01 MTR_2g461140 36.872 179 74 6 41 214 33 177 6.24e-28 105
MsG0580026626.01.T01 MTR_2g090505 29.469 207 140 3 53 255 83 287 1.67e-26 105
MsG0580026626.01.T01 MTR_6g029530 34.826 201 109 4 35 215 468 666 1.86e-26 108
MsG0580026626.01.T01 MTR_0632s0010 50.000 102 51 0 156 257 5 106 2.77e-26 100
MsG0580026626.01.T01 MTR_7g064870 36.628 172 95 5 1 170 1 160 1.12e-25 100
MsG0580026626.01.T01 MTR_3g022615 60.976 82 25 2 1 75 52 133 1.23e-24 95.9
MsG0580026626.01.T01 MTR_1g024995 76.271 59 14 0 1 59 14 72 1.95e-24 94.4
MsG0580026626.01.T01 MTR_4g049670 55.682 88 37 2 78 164 45 131 2.09e-24 95.1
MsG0580026626.01.T01 MTR_1g099140 29.851 201 135 3 59 255 89 287 7.82e-24 100
MsG0580026626.01.T01 MTR_1g043440 50.515 97 48 0 140 236 173 269 1.18e-23 97.4
MsG0580026626.01.T01 MTR_4g113170 55.556 90 40 0 129 218 72 161 2.16e-23 99.4
MsG0580026626.01.T01 MTR_5g070810 44.954 109 57 2 68 175 6 112 7.39e-23 90.5
MsG0580026626.01.T01 MTR_0528s0010 36.434 129 81 1 113 241 7 134 1.12e-22 90.9
MsG0580026626.01.T01 MTR_7g057800 44.000 125 55 2 1 110 1 125 1.87e-22 93.2
MsG0580026626.01.T01 MTR_7g057800 41.935 124 57 2 12 120 133 256 8.93e-21 89.0
MsG0580026626.01.T01 MTR_4g066090 52.874 87 40 1 132 218 68 153 2.69e-22 90.5
MsG0580026626.01.T01 MTR_2g023130 34.375 128 84 0 128 255 58 185 5.41e-22 91.3
MsG0580026626.01.T01 MTR_6g452470 56.098 82 29 2 1 75 122 203 1.48e-21 90.1
MsG0580026626.01.T01 MTR_0360s0020 71.186 59 17 0 1 59 24 82 3.34e-21 85.5
MsG0580026626.01.T01 MTR_7g024830 61.194 67 26 0 156 222 1 67 3.90e-21 84.7
MsG0580026626.01.T01 MTR_8g037210 44.954 109 40 1 147 255 1 89 4.25e-21 89.7
MsG0580026626.01.T01 MTR_8g016360 38.710 124 69 4 49 168 13 133 1.54e-20 85.1
MsG0580026626.01.T01 MTR_2g451070 41.739 115 64 2 1 114 7 119 2.38e-20 84.3
MsG0580026626.01.T01 MTR_1g080040 46.154 104 55 1 102 204 5 108 2.90e-20 84.7
MsG0580026626.01.T01 MTR_5g030790 55.128 78 29 1 1 72 31 108 6.46e-20 82.8
MsG0580026626.01.T01 MTR_2g073060 44.681 94 51 1 28 121 76 168 1.76e-19 83.2
MsG0580026626.01.T01 MTR_7g034570 38.462 117 63 1 96 212 74 181 2.31e-19 83.6
MsG0580026626.01.T01 MTR_3g116710 31.098 164 107 3 47 206 72 233 2.62e-19 84.7
MsG0580026626.01.T01 MTR_1g081020 67.213 61 14 1 1 55 32 92 2.68e-19 80.5
MsG0580026626.01.T01 MTR_3g455770 66.667 66 15 2 1 59 7 72 3.71e-19 80.5
MsG0580026626.01.T01 MTR_4g048360 61.538 65 19 1 1 59 1 65 5.01e-19 80.1
MsG0580026626.01.T01 MTR_1g075420 41.284 109 60 2 33 140 22 127 1.16e-18 80.1
MsG0580026626.01.T01 MTR_5g032220 25.604 207 132 2 53 255 71 259 1.47e-18 85.1
MsG0580026626.01.T01 MTR_7g056020 27.184 206 124 3 53 255 383 565 1.58e-18 85.1
MsG0580026626.01.T01 MTR_7g055617 68.852 61 13 1 1 55 1 61 3.32e-18 82.4
MsG0580026626.01.T01 MTR_3g045850 47.059 85 42 1 33 117 55 136 4.74e-18 79.0
MsG0580026626.01.T01 MTR_4g132765 40.952 105 50 1 151 255 305 397 5.79e-18 83.6
MsG0580026626.01.T01 MTR_4g051890 58.065 62 26 0 147 208 1 62 2.29e-17 74.7
MsG0580026626.01.T01 MTR_6g077970 69.091 55 10 2 22 69 44 98 4.54e-17 74.7
MsG0580026626.01.T01 MTR_8g446840 61.404 57 22 0 141 197 23 79 1.56e-16 72.8
MsG0580026626.01.T01 MTR_5g015710 42.342 111 60 2 33 142 59 166 2.35e-16 75.9
MsG0580026626.01.T01 MTR_5g055912 58.824 51 21 0 129 179 10 60 5.70e-16 70.9
MsG0580026626.01.T01 MTR_5g060510 41.958 143 53 4 25 162 41 158 9.16e-16 73.6
MsG0580026626.01.T01 MTR_1g075860 47.368 76 37 1 33 108 32 104 1.53e-15 71.6
MsG0580026626.01.T01 MTR_5g072970 33.333 114 69 1 128 241 35 141 1.77e-15 74.7
MsG0580026626.01.T01 MTR_2g027000 43.038 79 44 1 140 218 98 175 3.35e-15 72.0
MsG0580026626.01.T01 MTR_1g043340 71.429 42 12 0 145 186 3 44 1.55e-14 68.2
MsG0580026626.01.T01 MTR_3g007220 54.237 59 27 0 156 214 1 59 7.09e-14 66.6
MsG0580026626.01.T01 MTR_5g046145 31.579 152 93 4 59 206 125 269 8.79e-14 70.5
MsG0580026626.01.T01 MTR_5g053380 55.556 72 22 2 1 66 1 68 9.66e-14 65.5
MsG0580026626.01.T01 MTR_2g067620 29.487 156 90 3 100 255 1 136 1.43e-12 67.8
MsG0580026626.01.T01 MTR_3g058780 48.148 81 35 2 1 74 1 81 2.00e-12 67.4
MsG0580026626.01.T01 MTR_5g071980 43.333 90 49 1 2 91 8 95 1.24e-11 63.9
MsG0580026626.01.T01 MTR_5g071805 58.824 51 21 0 147 197 1 51 4.51e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 59 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATACAATCGAAGATATTT+TGG 0.130692 5:+40975601 MsG0580026626.01.T01:CDS
GCTTGACATCTCCGGAAATT+TGG 0.174919 5:-40974908 None:intergenic
CATTCTTGCCGGTAGATTAA+AGG 0.261935 5:+40975346 MsG0580026626.01.T01:CDS
CGAAACATCTTCCGCGTTCT+CGG 0.299724 5:-40974862 None:intergenic
TGGGGATTGAACATTCTTAA+TGG 0.302650 5:+40975284 MsG0580026626.01.T01:CDS
AAGTGTATCAAAATATTTCT+TGG 0.307634 5:-40975416 None:intergenic
GGTACATTGTCAAGCAAATA+AGG 0.335641 5:+40975079 MsG0580026626.01.T01:CDS
TCACACACTAGGCGCAATAT+TGG 0.336242 5:-40975143 None:intergenic
TTAGAAGCTTGTTCAATGTT+TGG 0.354318 5:-40974951 None:intergenic
GCCATGGAGCCGACTTTAGA+AGG 0.369702 5:+40975320 MsG0580026626.01.T01:CDS
TTAGAAGGACACATTCTTGC+CGG 0.401340 5:+40975335 MsG0580026626.01.T01:CDS
CGAGAACGCGGAAGATGTTT+CGG 0.401935 5:+40974863 MsG0580026626.01.T01:CDS
TCTTGGAAGCATCTTGCTCT+TGG 0.410023 5:-40975399 None:intergenic
TTAAACAACTTAACGGATGT+TGG 0.423441 5:-40975630 None:intergenic
GCTTGAAGTGGGACGACACC+GGG 0.429884 5:-40974984 None:intergenic
AAGTACGCAAACAAAGGAAT+GGG 0.435440 5:+40975265 MsG0580026626.01.T01:CDS
GTCATCCTCCTTTAATCTAC+CGG 0.444072 5:-40975354 None:intergenic
CAAGATAGAGAAGAATTGCT+TGG 0.447261 5:+40975053 MsG0580026626.01.T01:CDS
GCAATATCTAATCTCGAAGT+TGG 0.455480 5:+40975535 MsG0580026626.01.T01:CDS
AAGATAGAGAAGAATTGCTT+GGG 0.472957 5:+40975054 MsG0580026626.01.T01:CDS
GGCTTGAAGTGGGACGACAC+CGG 0.488907 5:-40974985 None:intergenic
ACCTAGCCGTGTCCACTTCG+TGG 0.493906 5:-40975007 None:intergenic
TTTGGTTTGACTTCAACCTT+AGG 0.495330 5:-40974933 None:intergenic
CGGAGATGTCAAGCCGCCTA+AGG 0.496298 5:+40974917 MsG0580026626.01.T01:CDS
AAAATATGGAAGGCAAATAG+AGG 0.504435 5:+40975497 MsG0580026626.01.T01:CDS
GGGTGCTTGTTCATGATTAG+TGG 0.512698 5:+40975236 MsG0580026626.01.T01:CDS
TCCACTTCGTGGGCTTGAAG+TGG 0.514367 5:-40974996 None:intergenic
CTTAGGCGGCTTGACATCTC+CGG 0.514762 5:-40974916 None:intergenic
AAAGTACGCAAACAAAGGAA+TGG 0.536075 5:+40975264 MsG0580026626.01.T01:CDS
TCCTTCTAAAGTCGGCTCCA+TGG 0.537232 5:-40975321 None:intergenic
CCCACGAAGTGGACACGGCT+AGG 0.556465 5:+40975006 MsG0580026626.01.T01:CDS
ATATCTAATCTCGAAGTTGG+AGG 0.561182 5:+40975538 MsG0580026626.01.T01:CDS
GGTTTGACTTCAACCTTAGG+CGG 0.562963 5:-40974930 None:intergenic
CTAAAGTCGGCTCCATGGCA+TGG 0.565847 5:-40975316 None:intergenic
ACACTAGGCGCAATATTGGA+TGG 0.574037 5:-40975139 None:intergenic
CATTGTCAAGCAAATAAGGC+GGG 0.578385 5:+40975083 MsG0580026626.01.T01:CDS
CCACTTCGTGGGCTTGAAGT+GGG 0.578731 5:-40974995 None:intergenic
CCTAGCCGTGTCCACTTCGT+GGG 0.585282 5:-40975006 None:intergenic
CAACGAGCTCAAGAAAATGC+GGG 0.590199 5:+40975216 MsG0580026626.01.T01:CDS
TTCGAGATTAGATATTGCAA+CGG 0.592456 5:-40975530 None:intergenic
TATTGCGCCTAGTGTGTGAA+AGG 0.599497 5:+40975147 MsG0580026626.01.T01:CDS
AGAATGTGTCCTTCTAAAGT+CGG 0.605253 5:-40975329 None:intergenic
GCTTCTAAATATGTTAGCCC+CGG 0.608055 5:+40974966 MsG0580026626.01.T01:CDS
TAGAGAAGAATTGCTTGGGT+GGG 0.612800 5:+40975058 MsG0580026626.01.T01:CDS
TATAGTAATGACCGAGAACG+CGG 0.612880 5:+40974851 None:intergenic
CTCCACTCCTTTCACACACT+AGG 0.613496 5:-40975154 None:intergenic
TGGAGTTCACAACCATGCCA+TGG 0.616932 5:+40975304 MsG0580026626.01.T01:CDS
TCAAGCCCACGAAGTGGACA+CGG 0.617844 5:+40975001 MsG0580026626.01.T01:CDS
CCCACTTCAAGCCCACGAAG+TGG 0.620403 5:+40974995 MsG0580026626.01.T01:CDS
ATAGAGAAGAATTGCTTGGG+TGG 0.626808 5:+40975057 MsG0580026626.01.T01:CDS
TCTTGCCGGTAGATTAAAGG+AGG 0.642088 5:+40975349 MsG0580026626.01.T01:CDS
TTCACATTTGTCATGCAATG+TGG 0.642856 5:-40975452 None:intergenic
ACTTATTACTCAAGAACACA+TGG 0.643139 5:+40975572 MsG0580026626.01.T01:CDS
ACAACGAGCTCAAGAAAATG+CGG 0.647525 5:+40975215 MsG0580026626.01.T01:CDS
CGCCTAGTGTGTGAAAGGAG+TGG 0.648821 5:+40975152 MsG0580026626.01.T01:CDS
ATATCAAAGTACGCAAACAA+AGG 0.650764 5:+40975259 MsG0580026626.01.T01:CDS
CTTGAAGTGGGACGACACCG+GGG 0.682631 5:-40974983 None:intergenic
ACATTGTCAAGCAAATAAGG+CGG 0.684221 5:+40975082 MsG0580026626.01.T01:CDS
AGTACGCAAACAAAGGAATG+GGG 0.691993 5:+40975266 MsG0580026626.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGCTTTGTTTTTTTTTTTTT+AGG - Chr5:40975191-40975210 None:intergenic 15.0%
!! AAGTGTATCAAAATATTTCT+TGG - Chr5:40975419-40975438 None:intergenic 20.0%
!!! AATACAATCGAAGATATTTT+GGG + Chr5:40975602-40975621 MsG0580026626.01.T01:CDS 20.0%
!!! TAATACAATCGAAGATATTT+TGG + Chr5:40975601-40975620 MsG0580026626.01.T01:CDS 20.0%
! ACAATGAACGTCAAAAAATA+TGG + Chr5:40975483-40975502 MsG0580026626.01.T01:CDS 25.0%
AAAATATGGAAGGCAAATAG+AGG + Chr5:40975497-40975516 MsG0580026626.01.T01:CDS 30.0%
AAGATAGAGAAGAATTGCTT+GGG + Chr5:40975054-40975073 MsG0580026626.01.T01:CDS 30.0%
ACTTATTACTCAAGAACACA+TGG + Chr5:40975572-40975591 MsG0580026626.01.T01:CDS 30.0%
ATATCAAAGTACGCAAACAA+AGG + Chr5:40975259-40975278 MsG0580026626.01.T01:CDS 30.0%
TGAACGTCAAAAAATATGGA+AGG + Chr5:40975487-40975506 MsG0580026626.01.T01:CDS 30.0%
TTCGAGATTAGATATTGCAA+CGG - Chr5:40975533-40975552 None:intergenic 30.0%
! CGTAATTTTGTCCAAATTTC+CGG + Chr5:40974897-40974916 MsG0580026626.01.T01:CDS 30.0%
! TTAGAAGCTTGTTCAATGTT+TGG - Chr5:40974954-40974973 None:intergenic 30.0%
AAAGTACGCAAACAAAGGAA+TGG + Chr5:40975264-40975283 MsG0580026626.01.T01:CDS 35.0%
AAGTACGCAAACAAAGGAAT+GGG + Chr5:40975265-40975284 MsG0580026626.01.T01:CDS 35.0%
ACATTGTCAAGCAAATAAGG+CGG + Chr5:40975082-40975101 MsG0580026626.01.T01:CDS 35.0%
ATATCTAATCTCGAAGTTGG+AGG + Chr5:40975538-40975557 MsG0580026626.01.T01:CDS 35.0%
CAAGATAGAGAAGAATTGCT+TGG + Chr5:40975053-40975072 MsG0580026626.01.T01:CDS 35.0%
GCAATATCTAATCTCGAAGT+TGG + Chr5:40975535-40975554 MsG0580026626.01.T01:CDS 35.0%
GGTACATTGTCAAGCAAATA+AGG + Chr5:40975079-40975098 MsG0580026626.01.T01:CDS 35.0%
TGGGGATTGAACATTCTTAA+TGG + Chr5:40975284-40975303 MsG0580026626.01.T01:CDS 35.0%
TTCACATTTGTCATGCAATG+TGG - Chr5:40975455-40975474 None:intergenic 35.0%
!! AGAATGTGTCCTTCTAAAGT+CGG - Chr5:40975332-40975351 None:intergenic 35.0%
!! TTTGGTTTGACTTCAACCTT+AGG - Chr5:40974936-40974955 None:intergenic 35.0%
ACAACGAGCTCAAGAAAATG+CGG + Chr5:40975215-40975234 MsG0580026626.01.T01:CDS 40.0%
AGTACGCAAACAAAGGAATG+GGG + Chr5:40975266-40975285 MsG0580026626.01.T01:CDS 40.0%
ATAGAGAAGAATTGCTTGGG+TGG + Chr5:40975057-40975076 MsG0580026626.01.T01:CDS 40.0%
CATTCTTGCCGGTAGATTAA+AGG + Chr5:40975346-40975365 MsG0580026626.01.T01:CDS 40.0%
CATTGTCAAGCAAATAAGGC+GGG + Chr5:40975083-40975102 MsG0580026626.01.T01:CDS 40.0%
GCTTCTAAATATGTTAGCCC+CGG + Chr5:40974966-40974985 MsG0580026626.01.T01:CDS 40.0%
GTCATCCTCCTTTAATCTAC+CGG - Chr5:40975357-40975376 None:intergenic 40.0%
TAGAGAAGAATTGCTTGGGT+GGG + Chr5:40975058-40975077 MsG0580026626.01.T01:CDS 40.0%
TTAGAAGGACACATTCTTGC+CGG + Chr5:40975335-40975354 MsG0580026626.01.T01:CDS 40.0%
ACACTAGGCGCAATATTGGA+TGG - Chr5:40975142-40975161 None:intergenic 45.0%
CAACGAGCTCAAGAAAATGC+GGG + Chr5:40975216-40975235 MsG0580026626.01.T01:CDS 45.0%
GCTTGACATCTCCGGAAATT+TGG - Chr5:40974911-40974930 None:intergenic 45.0%
GGGTGCTTGTTCATGATTAG+TGG + Chr5:40975236-40975255 MsG0580026626.01.T01:CDS 45.0%
TATTGCGCCTAGTGTGTGAA+AGG + Chr5:40975147-40975166 MsG0580026626.01.T01:CDS 45.0%
TCACACACTAGGCGCAATAT+TGG - Chr5:40975146-40975165 None:intergenic 45.0%
TCTTGCCGGTAGATTAAAGG+AGG + Chr5:40975349-40975368 MsG0580026626.01.T01:CDS 45.0%
! GGTTTGACTTCAACCTTAGG+CGG - Chr5:40974933-40974952 None:intergenic 45.0%
!! TCTTGGAAGCATCTTGCTCT+TGG - Chr5:40975402-40975421 None:intergenic 45.0%
CGAAACATCTTCCGCGTTCT+CGG - Chr5:40974865-40974884 None:intergenic 50.0%
CGAGAACGCGGAAGATGTTT+CGG + Chr5:40974863-40974882 MsG0580026626.01.T01:CDS 50.0%
CTCCACTCCTTTCACACACT+AGG - Chr5:40975157-40975176 None:intergenic 50.0%
TGGAGTTCACAACCATGCCA+TGG + Chr5:40975304-40975323 MsG0580026626.01.T01:CDS 50.0%
!! TCCTTCTAAAGTCGGCTCCA+TGG - Chr5:40975324-40975343 None:intergenic 50.0%
CCACTTCGTGGGCTTGAAGT+GGG - Chr5:40974998-40975017 None:intergenic 55.0%
CGCCTAGTGTGTGAAAGGAG+TGG + Chr5:40975152-40975171 MsG0580026626.01.T01:CDS 55.0%
CTTAGGCGGCTTGACATCTC+CGG - Chr5:40974919-40974938 None:intergenic 55.0%
TCAAGCCCACGAAGTGGACA+CGG + Chr5:40975001-40975020 MsG0580026626.01.T01:CDS 55.0%
TCCACTTCGTGGGCTTGAAG+TGG - Chr5:40974999-40975018 None:intergenic 55.0%
! CTAAAGTCGGCTCCATGGCA+TGG - Chr5:40975319-40975338 None:intergenic 55.0%
! GCCATGGAGCCGACTTTAGA+AGG + Chr5:40975320-40975339 MsG0580026626.01.T01:CDS 55.0%
ACCTAGCCGTGTCCACTTCG+TGG - Chr5:40975010-40975029 None:intergenic 60.0%
CCCACTTCAAGCCCACGAAG+TGG + Chr5:40974995-40975014 MsG0580026626.01.T01:CDS 60.0%
CCTAGCCGTGTCCACTTCGT+GGG - Chr5:40975009-40975028 None:intergenic 60.0%
CGGAGATGTCAAGCCGCCTA+AGG + Chr5:40974917-40974936 MsG0580026626.01.T01:CDS 60.0%
CTTGAAGTGGGACGACACCG+GGG - Chr5:40974986-40975005 None:intergenic 60.0%
GCTTGAAGTGGGACGACACC+GGG - Chr5:40974987-40975006 None:intergenic 60.0%
GGCTTGAAGTGGGACGACAC+CGG - Chr5:40974988-40975007 None:intergenic 60.0%
CCCACGAAGTGGACACGGCT+AGG + Chr5:40975006-40975025 MsG0580026626.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 40974858 40975643 40974858 ID=MsG0580026626.01;Name=MsG0580026626.01
Chr5 mRNA 40974858 40975643 40974858 ID=MsG0580026626.01.T01;Parent=MsG0580026626.01;Name=MsG0580026626.01.T01;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|261
Chr5 exon 40974858 40975643 40974858 ID=MsG0580026626.01.T01:exon:9807;Parent=MsG0580026626.01.T01
Chr5 CDS 40974858 40975643 40974858 ID=MsG0580026626.01.T01:cds;Parent=MsG0580026626.01.T01
Gene Sequence

>MsG0580026626.01.T01

ATGACCGAGAACGCGGAAGATGTTTCGGAAGAGACAAAACGTAATTTTGTCCAAATTTCCGGAGATGTCAAGCCGCCTAAGGTTGAAGTCAAACCAAACATTGAACAAGCTTCTAAATATGTTAGCCCCGGTGTCGTCCCACTTCAAGCCCACGAAGTGGACACGGCTAGGTTTTTTTCTGACGACATTAAGTTTCAAGATAGAGAAGAATTGCTTGGGTGGGTACATTGTCAAGCAAATAAGGCGGGATTTACAATTGTTACACAAAGATCAAGCTTGATCCATCCAATATTGCGCCTAGTGTGTGAAAGGAGTGGAGCTCACAAAGTGCCTAAAAAAAAAAAAACAAAGCATGCGACAACGAGCTCAAGAAAATGCGGGTGCTTGTTCATGATTAGTGGATATCAAAGTACGCAAACAAAGGAATGGGGATTGAACATTCTTAATGGAGTTCACAACCATGCCATGGAGCCGACTTTAGAAGGACACATTCTTGCCGGTAGATTAAAGGAGGATGACAAGAAGATTGTACATGACTTGACCAAGAGCAAGATGCTTCCAAGAAATATTTTGATACACTTGAAGAACAAAAGACCACATTGCATGACAAATGTGAAGCAAGTGTACAATGAACGTCAAAAAATATGGAAGGCAAATAGAGGTGACAAGAAGCCGTTGCAATATCTAATCTCGAAGTTGGAGGAGCACAACTATACTTATTACTCAAGAACACATGGTGAAAGTAATACAATCGAAGATATTTTGGGCTCATCCAACATCCGTTAA
Protein sequence

>MsG0580026626.01.T01

MTENAEDVSEETKRNFVQISGDVKPPKVEVKPNIEQASKYVSPGVVPLQAHEVDTARFFSDDIKFQDREELLGWVHCQANKAGFTIVTQRSSLIHPILRLVCERSGAHKVPKKKKTKHATTSSRKCGCLFMISGYQSTQTKEWGLNILNGVHNHAMEPTLEGHILAGRLKEDDKKIVHDLTKSKMLPRNILIHLKNKRPHCMTNVKQVYNERQKIWKANRGDKKPLQYLISKLEEHNYTYYSRTHGESNTIEDILGSSNIR*