AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027489.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027489.01.T01 MTR_5g061890 93.987 316 19 0 1 316 1 316 0.0 614
MsG0580027489.01.T01 MTR_5g060780 93.671 316 20 0 1 316 1 316 0.0 612
MsG0580027489.01.T01 MTR_5g460920 93.671 316 20 0 1 316 1 316 0.0 610
MsG0580027489.01.T01 MTR_5g061220 55.620 347 117 8 1 316 8 348 2.50e-118 351
MsG0580027489.01.T01 MTR_5g060630 56.497 354 113 7 1 316 1 351 1.17e-114 342
MsG0580027489.01.T01 MTR_5g460740 56.497 354 113 7 1 316 1 351 1.17e-114 342
MsG0580027489.01.T01 MTR_1g058210 56.269 327 124 8 1 316 1 319 2.79e-109 325
MsG0580027489.01.T01 MTR_2g024430 51.818 330 129 13 1 316 9 322 6.71e-95 290
MsG0580027489.01.T01 MTR_5g040740 51.818 330 128 11 1 315 1 314 8.26e-91 277
MsG0580027489.01.T01 MTR_5g040880 49.371 318 138 8 8 315 7 311 2.31e-90 279
MsG0580027489.01.T01 MTR_5g082140 45.399 326 149 10 6 316 6 317 4.11e-79 248
MsG0580027489.01.T01 MTR_5g060770 57.031 256 64 5 61 314 7 218 6.44e-78 242
MsG0580027489.01.T01 MTR_2g006270 45.846 325 148 11 6 316 7 317 9.20e-78 244
MsG0580027489.01.T01 MTR_2g006380 44.410 322 150 12 6 315 14 318 1.86e-74 236
MsG0580027489.01.T01 MTR_5g062970 58.163 196 66 7 12 195 38 229 3.20e-64 203
MsG0580027489.01.T01 MTR_5g460910 49.624 266 65 8 52 314 14 213 2.50e-58 191
MsG0580027489.01.T01 MTR_3g073420 34.734 357 171 10 9 315 16 360 5.28e-56 191
MsG0580027489.01.T01 MTR_2g094570 34.916 358 172 12 9 315 8 355 2.41e-50 177
MsG0580027489.01.T01 MTR_2g094570 34.916 358 172 12 9 315 8 355 3.04e-50 177
MsG0580027489.01.T01 MTR_2g094570 34.358 358 174 12 9 315 64 411 4.62e-50 177
MsG0580027489.01.T01 MTR_1g064430 35.150 367 167 13 9 315 24 379 2.10e-49 175
MsG0580027489.01.T01 MTR_1g064430 35.150 367 167 13 9 315 37 392 2.13e-49 175
MsG0580027489.01.T01 MTR_1g094960 33.795 361 171 13 9 315 16 362 2.74e-49 174
MsG0580027489.01.T01 MTR_4g058930 34.615 364 171 12 9 315 9 362 3.62e-47 168
MsG0580027489.01.T01 MTR_4g058930 34.615 364 171 12 9 315 9 362 4.58e-47 168
MsG0580027489.01.T01 MTR_7g101275 32.177 317 173 11 22 314 2 300 6.02e-41 147
MsG0580027489.01.T01 MTR_7g101280 29.101 378 178 12 9 315 28 386 6.60e-41 151
MsG0580027489.01.T01 MTR_0041s0110 29.101 378 178 12 9 315 28 386 6.60e-41 151
MsG0580027489.01.T01 MTR_0041s0120 30.982 326 177 11 22 314 2 312 6.33e-37 137
MsG0580027489.01.T01 MTR_2g014770 29.870 308 187 10 4 289 43 343 1.97e-34 132
MsG0580027489.01.T01 MTR_2g014770 29.870 308 187 10 4 289 43 343 2.56e-34 132
MsG0580027489.01.T01 MTR_2g018690 30.247 324 203 10 9 315 20 337 1.72e-32 127
MsG0580027489.01.T01 MTR_2g005240 28.701 331 192 9 12 316 23 335 1.63e-31 124
MsG0580027489.01.T01 MTR_7g062540 28.076 317 211 7 12 316 14 325 1.22e-30 122
MsG0580027489.01.T01 MTR_1g024025 31.034 290 184 8 12 287 43 330 1.71e-30 122
MsG0580027489.01.T01 MTR_4g021580 27.760 317 212 7 12 316 19 330 3.55e-30 120
MsG0580027489.01.T01 MTR_4g021580 27.760 317 212 7 12 316 19 330 4.74e-30 120
MsG0580027489.01.T01 MTR_8g100050 28.750 320 205 9 12 315 59 371 5.05e-30 120
MsG0580027489.01.T01 MTR_8g100050 28.750 320 205 9 12 315 59 371 6.96e-30 120
MsG0580027489.01.T01 MTR_4g088210 28.710 310 175 11 12 289 38 333 7.31e-30 120
MsG0580027489.01.T01 MTR_4g088210 28.710 310 175 11 12 289 38 333 9.04e-30 119
MsG0580027489.01.T01 MTR_8g027440 29.245 318 205 9 12 316 29 339 1.64e-29 119
MsG0580027489.01.T01 MTR_5g076270 29.907 321 202 10 12 315 24 338 2.00e-29 119
MsG0580027489.01.T01 MTR_5g062960 64.045 89 31 1 227 315 1 88 3.69e-29 111
MsG0580027489.01.T01 MTR_8g079492 28.743 334 194 12 9 315 20 336 6.12e-29 117
MsG0580027489.01.T01 MTR_8g079492 28.743 334 194 12 9 315 20 336 6.18e-29 117
MsG0580027489.01.T01 MTR_3g064050 29.836 305 190 9 12 300 26 322 1.03e-28 116
MsG0580027489.01.T01 MTR_4g124900 28.483 323 208 9 9 315 20 335 2.47e-27 112
MsG0580027489.01.T01 MTR_4g124900 28.483 323 208 9 9 315 20 335 2.63e-27 112
MsG0580027489.01.T01 MTR_2g043250 29.321 324 204 11 9 315 20 335 2.82e-27 112
MsG0580027489.01.T01 MTR_2g093740 30.508 295 169 10 12 276 56 344 3.44e-27 112
MsG0580027489.01.T01 MTR_2g093740 30.508 295 169 10 12 276 56 344 4.09e-27 112
MsG0580027489.01.T01 MTR_2g093740 30.508 295 169 10 12 276 56 344 4.17e-27 112
MsG0580027489.01.T01 MTR_4g060460 29.870 308 184 10 12 291 54 357 1.79e-25 107
MsG0580027489.01.T01 MTR_4g060460 29.870 308 184 10 12 291 54 357 2.23e-25 107
MsG0580027489.01.T01 MTR_2g093740 29.221 308 169 11 12 276 56 357 4.38e-24 103
MsG0580027489.01.T01 MTR_2g093740 29.221 308 169 11 12 276 56 357 5.38e-24 102
MsG0580027489.01.T01 MTR_2g093740 29.221 308 169 11 12 276 56 357 6.05e-24 102
MsG0580027489.01.T01 MTR_8g101360 28.793 323 209 10 9 315 28 345 4.14e-23 100
MsG0580027489.01.T01 MTR_8g446900 28.755 233 141 9 61 276 12 236 1.25e-17 83.2
MsG0580027489.01.T01 MTR_8g079492 27.341 267 160 9 70 315 1 254 3.76e-17 82.8
MsG0580027489.01.T01 MTR_5g046120 35.897 117 69 3 50 160 12 128 5.96e-14 68.2
MsG0580027489.01.T01 MTR_2g093740 29.082 196 118 7 101 276 20 214 1.04e-12 68.9
MsG0580027489.01.T01 MTR_2g093740 29.082 196 118 7 101 276 20 214 1.06e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027489.01.T01 AT1G77850 33.711 353 179 12 8 315 15 357 4.53e-55 189
MsG0580027489.01.T01 AT1G77850 33.711 353 179 12 8 315 15 357 5.41e-55 189
MsG0580027489.01.T01 AT4G30080 33.894 357 177 12 9 315 16 363 7.85e-46 165
MsG0580027489.01.T01 AT2G28350 32.065 368 176 13 9 315 7 361 1.17e-44 161
MsG0580027489.01.T01 AT2G28350 32.065 368 176 13 9 315 7 361 1.36e-44 162
MsG0580027489.01.T01 AT2G46530 31.288 326 188 11 12 316 42 352 3.76e-35 134
MsG0580027489.01.T01 AT2G46530 31.288 326 188 11 12 316 21 331 5.35e-35 134
MsG0580027489.01.T01 AT3G61830 30.247 324 194 11 12 316 25 335 5.65e-35 134
MsG0580027489.01.T01 AT1G59750 30.960 323 195 11 12 316 22 334 1.93e-33 130
MsG0580027489.01.T01 AT1G59750 30.960 323 195 11 12 316 22 334 1.93e-33 130
MsG0580027489.01.T01 AT1G59750 30.960 323 195 11 12 316 22 334 1.93e-33 130
MsG0580027489.01.T01 AT1G59750 30.960 323 195 11 12 316 22 334 2.04e-33 130
MsG0580027489.01.T01 AT1G35520 31.343 335 172 15 12 316 27 333 5.99e-32 125
MsG0580027489.01.T01 AT1G34390 30.462 325 186 12 12 316 27 331 7.47e-32 125
MsG0580027489.01.T01 AT5G37020 31.173 324 194 13 12 315 22 336 9.15e-32 125
MsG0580027489.01.T01 AT5G37020 31.173 324 194 13 12 315 22 336 1.20e-31 125
MsG0580027489.01.T01 AT1G30330 30.132 302 193 7 12 300 23 319 2.23e-31 124
MsG0580027489.01.T01 AT1G30330 30.132 302 193 7 12 300 25 321 2.36e-31 124
MsG0580027489.01.T01 AT1G30330 30.132 302 193 7 12 300 25 321 2.36e-31 124
MsG0580027489.01.T01 AT1G34310 30.838 334 181 13 9 316 24 333 3.92e-31 123
MsG0580027489.01.T01 AT5G62000 28.135 327 198 10 12 315 61 373 3.83e-30 120
MsG0580027489.01.T01 AT5G62000 28.135 327 198 10 12 315 61 373 4.19e-30 120
MsG0580027489.01.T01 AT5G62000 28.135 327 198 10 12 315 61 373 4.19e-30 120
MsG0580027489.01.T01 AT5G62000 28.135 327 198 10 12 315 61 373 4.19e-30 120
MsG0580027489.01.T01 AT5G62000 28.135 327 198 10 12 315 61 373 4.19e-30 120
MsG0580027489.01.T01 AT4G23980 28.213 319 208 8 12 316 12 323 4.33e-30 120
MsG0580027489.01.T01 AT4G23980 28.213 319 208 8 12 316 12 323 4.44e-30 120
MsG0580027489.01.T01 AT1G34410 29.909 331 182 13 12 316 27 333 4.77e-30 120
MsG0580027489.01.T01 AT2G33860 31.359 287 168 9 12 275 54 334 8.02e-30 119
MsG0580027489.01.T01 AT1G35540 30.149 335 176 15 12 316 27 333 2.72e-29 118
MsG0580027489.01.T01 AT1G35240 30.149 335 176 15 12 316 27 333 1.53e-28 115
MsG0580027489.01.T01 AT1G34170 29.688 320 184 13 12 311 25 323 4.99e-28 114
MsG0580027489.01.T01 AT1G19850 31.228 285 175 9 7 272 38 320 2.28e-27 112
MsG0580027489.01.T01 AT1G19850 31.228 285 175 9 7 272 49 331 2.33e-27 112
MsG0580027489.01.T01 AT1G43950 32.353 204 118 6 12 203 27 222 2.43e-27 107
MsG0580027489.01.T01 AT5G60450 30.375 293 171 11 12 276 65 352 4.14e-26 109
MsG0580027489.01.T01 AT5G60450 30.375 293 171 11 12 276 41 328 4.36e-26 108
MsG0580027489.01.T01 AT1G19220 29.825 285 177 7 9 276 20 298 1.08e-25 108
MsG0580027489.01.T01 AT5G20730 30.450 289 183 8 9 282 21 306 3.28e-25 106
MsG0580027489.01.T01 AT5G20730 30.450 289 183 8 9 282 21 306 3.91e-25 106
MsG0580027489.01.T01 AT1G34170 33.175 211 114 7 12 204 25 226 6.67e-25 105
MsG0580027489.01.T01 AT1G34170 33.175 211 114 7 12 204 25 226 7.42e-25 104
MsG0580027489.01.T01 AT5G20730 29.861 288 185 7 9 282 21 305 8.63e-25 105
MsG0580027489.01.T01 AT3G61830 30.037 273 164 9 59 316 24 284 9.26e-23 99.0
MsG0580027489.01.T01 AT2G46530 29.185 233 143 7 94 316 24 244 1.86e-16 80.1
MsG0580027489.01.T01 AT2G33860 31.461 178 108 6 111 275 1 177 3.62e-16 79.3
MsG0580027489.01.T01 AT5G37020 29.918 244 150 10 85 315 6 241 7.92e-15 75.5

Find 77 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGCATATCTGCCATATTT+TGG 0.143600 5:-61989886 None:intergenic
TGTCTCCATCATCGTCTTCT+TGG 0.236516 5:-61990154 None:intergenic
AACTGATGAGATTAAGGTTT+TGG 0.252605 5:+61990514 MsG0580027489.01.T01:CDS
TAAACTTTAGAGTGAATCTT+TGG 0.260426 5:-61989927 None:intergenic
ATTCTTCTAATGTCCCTAAT+TGG 0.268826 5:+61990762 MsG0580027489.01.T01:CDS
GATGACAATTTCTCAGCTTA+AGG 0.289847 5:+61990715 MsG0580027489.01.T01:CDS
GAATTTAACTGATGAGATTA+AGG 0.298587 5:+61990508 MsG0580027489.01.T01:CDS
GATCTTTCCCAAGCTTGATT+TGG 0.314401 5:+61990256 MsG0580027489.01.T01:CDS
ACCTCAAGCATGCGCCAATT+AGG 0.318991 5:-61990776 None:intergenic
ATGAAGATTGGTTGGAAATC+TGG 0.337904 5:+61990644 MsG0580027489.01.T01:CDS
CTACTTCCCACGAGGTCATC+TGG 0.355762 5:+61989950 MsG0580027489.01.T01:CDS
CCTCAAGCATGCGCCAATTA+GGG 0.367711 5:-61990775 None:intergenic
ATCTTTGGAATCTTGACGTC+GGG 0.375178 5:-61989912 None:intergenic
TCCATCATCGTCTTCTTGGC+CGG 0.379595 5:-61990150 None:intergenic
AGATTTCCAACCAATCTTCA+TGG 0.383662 5:-61990642 None:intergenic
ATGACAATTTCTCAGCTTAA+GGG 0.392754 5:+61990716 MsG0580027489.01.T01:CDS
CTCGTGTGGAACCCAAAATA+TGG 0.402726 5:+61989874 MsG0580027489.01.T01:CDS
GCCGGGAACTACAGGAGGAG+GGG 0.417463 5:-61990132 None:intergenic
CGCTTCATCTGTAGTGAACT+TGG 0.424216 5:-61990471 None:intergenic
AATTCCGACAGATATCTTTC+CGG 0.425831 5:-61990438 None:intergenic
CTTGGTCAGTTACGGGAGTC+AGG 0.426329 5:-61990106 None:intergenic
TGGCCGGGAACTACAGGAGG+AGG 0.428083 5:-61990134 None:intergenic
CGACCTTAAAAGCCGAGAAT+GGG 0.441124 5:+61990304 MsG0580027489.01.T01:CDS
TGGAATCTTGACGTCGGGGC+CGG 0.443805 5:-61989907 None:intergenic
GACTCGTCCAAATCAAGCTT+GGG 0.456946 5:-61990263 None:intergenic
GTGTATTATCCGACAGCTAT+TGG 0.461034 5:+61990578 MsG0580027489.01.T01:CDS
TCTTCTTGGCCGGGAACTAC+AGG 0.462528 5:-61990140 None:intergenic
CCATCATCGTCTTCTTGGCC+GGG 0.465753 5:-61990149 None:intergenic
TACGGGAGTCAGGAGCAGTT+TGG 0.469490 5:-61990096 None:intergenic
CCGGGAACTACAGGAGGAGG+GGG 0.475602 5:-61990131 None:intergenic
GTTGACGATGCCATGAAGAT+TGG 0.477758 5:+61990632 MsG0580027489.01.T01:CDS
GATGAAAACAACAGAATCGT+TGG 0.490573 5:-61990405 None:intergenic
AGACTCGTCCAAATCAAGCT+TGG 0.490804 5:-61990264 None:intergenic
GAAGATTCATATTTCTTCAA+AGG 0.492904 5:-61990683 None:intergenic
ATGGTTCTTGTGGCAGCAGT+AGG 0.493323 5:-61989990 None:intergenic
CCGACCTTAAAAGCCGAGAA+TGG 0.494002 5:+61990303 MsG0580027489.01.T01:CDS
GAGACGATGCATGGAATGGA+TGG 0.515792 5:-61990029 None:intergenic
TCATCCTCTGCCACCTCGTG+TGG 0.517268 5:+61989860 MsG0580027489.01.T01:CDS
AATCTCAGTAGATTACATAC+TGG 0.519388 5:+61990347 MsG0580027489.01.T01:CDS
CCCTAATTGGCGCATGCTTG+AGG 0.522896 5:+61990775 MsG0580027489.01.T01:CDS
GGTTCCACACGAGGTGGCAG+AGG 0.527487 5:-61989864 None:intergenic
GGAAGAGACGATGCATGGAA+TGG 0.530637 5:-61990033 None:intergenic
TGGTTCTTGTGGCAGCAGTA+GGG 0.533159 5:-61989989 None:intergenic
AGATATCTGTCGGAATTCGC+AGG 0.543135 5:+61990444 MsG0580027489.01.T01:CDS
ACTACAGATGAAGCGGATGA+AGG 0.543135 5:+61990479 MsG0580027489.01.T01:CDS
TTTGGATGCAGTGGAATTGG+CGG 0.544683 5:+61990532 MsG0580027489.01.T01:CDS
ACGATGCCATGAAGATTGGT+TGG 0.558168 5:+61990636 MsG0580027489.01.T01:CDS
TCAGTAGATTACATACTGGC+TGG 0.560711 5:+61990351 MsG0580027489.01.T01:CDS
CCCGGCCAAGAAGACGATGA+TGG 0.562611 5:+61990149 MsG0580027489.01.T01:CDS
GGTTCTTGTGGCAGCAGTAG+GGG 0.568653 5:-61989988 None:intergenic
ATTATCCGACAGCTATTGGT+TGG 0.574808 5:+61990582 MsG0580027489.01.T01:CDS
GGCCGGGAACTACAGGAGGA+GGG 0.579671 5:-61990133 None:intergenic
TGGACGGTAACGATCAAGAA+TGG 0.583957 5:-61990009 None:intergenic
CAAGTTCACTACAGATGAAG+CGG 0.584809 5:+61990472 MsG0580027489.01.T01:CDS
AAAATATGGCAGATATGCGC+CGG 0.589425 5:+61989888 MsG0580027489.01.T01:CDS
TGACAATTTCTCAGCTTAAG+GGG 0.599563 5:+61990717 MsG0580027489.01.T01:CDS
TAATCTACTGAGATTTGCAT+AGG 0.604127 5:-61990339 None:intergenic
TCAACGGAAGAGACGATGCA+TGG 0.604313 5:-61990038 None:intergenic
GCAAAGACCTCGTCGGTGTG+AGG 0.608714 5:-61990074 None:intergenic
GACCTTAAAAGCCGAGAATG+GGG 0.616896 5:+61990305 MsG0580027489.01.T01:CDS
CGATGCATGGAATGGATGGA+CGG 0.620709 5:-61990025 None:intergenic
ACAGATGAAGCGGATGAAGG+AGG 0.630115 5:+61990482 MsG0580027489.01.T01:CDS
AATCTTTGGAATCTTGACGT+CGG 0.630358 5:-61989913 None:intergenic
ACGATCAAGAATGGTTCTTG+TGG 0.631537 5:-61990000 None:intergenic
TCACGCCAACCAATAGCTGT+CGG 0.635734 5:-61990587 None:intergenic
TCTGCCGGAAAGATATCTGT+CGG 0.642648 5:+61990434 MsG0580027489.01.T01:CDS
AGGATCAACAAAGAGATCAA+CGG 0.651533 5:-61990054 None:intergenic
ACCTTAAAAGCCGAGAATGG+GGG 0.652954 5:+61990306 MsG0580027489.01.T01:CDS
TGTTGATCCTCACACCGACG+AGG 0.655379 5:+61990067 MsG0580027489.01.T01:CDS
TCTTGGCCGGGAACTACAGG+AGG 0.657068 5:-61990137 None:intergenic
CAGTTTGGCAAAGACCTCGT+CGG 0.663811 5:-61990081 None:intergenic
AGGTGGCAGAGGATGAGACA+TGG 0.663852 5:-61989853 None:intergenic
TCTTTGGAATCTTGACGTCG+GGG 0.665271 5:-61989911 None:intergenic
ATCAAGTTAGAGCATTCGAT+AGG 0.670484 5:-61990236 None:intergenic
CATGTTCCAGATGACCTCGT+GGG 0.672658 5:-61989956 None:intergenic
GCATGTTCCAGATGACCTCG+TGG 0.672744 5:-61989957 None:intergenic
AAAGTTTACTACTTCCCACG+AGG 0.761653 5:+61989942 MsG0580027489.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GAAGATTCATATTTCTTCAA+AGG - Chr5:61990686-61990705 None:intergenic 25.0%
! GAATTTAACTGATGAGATTA+AGG + Chr5:61990508-61990527 MsG0580027489.01.T01:CDS 25.0%
!!! TAAACTTTAGAGTGAATCTT+TGG - Chr5:61989930-61989949 None:intergenic 25.0%
AATCTCAGTAGATTACATAC+TGG + Chr5:61990347-61990366 MsG0580027489.01.T01:CDS 30.0%
ATGACAATTTCTCAGCTTAA+GGG + Chr5:61990716-61990735 MsG0580027489.01.T01:CDS 30.0%
ATTCTTCTAATGTCCCTAAT+TGG + Chr5:61990762-61990781 MsG0580027489.01.T01:CDS 30.0%
TAATCTACTGAGATTTGCAT+AGG - Chr5:61990342-61990361 None:intergenic 30.0%
! AACTGATGAGATTAAGGTTT+TGG + Chr5:61990514-61990533 MsG0580027489.01.T01:CDS 30.0%
AATTCCGACAGATATCTTTC+CGG - Chr5:61990441-61990460 None:intergenic 35.0%
AGATTTCCAACCAATCTTCA+TGG - Chr5:61990645-61990664 None:intergenic 35.0%
AGGATCAACAAAGAGATCAA+CGG - Chr5:61990057-61990076 None:intergenic 35.0%
GATGAAAACAACAGAATCGT+TGG - Chr5:61990408-61990427 None:intergenic 35.0%
GATGACAATTTCTCAGCTTA+AGG + Chr5:61990715-61990734 MsG0580027489.01.T01:CDS 35.0%
TGACAATTTCTCAGCTTAAG+GGG + Chr5:61990717-61990736 MsG0580027489.01.T01:CDS 35.0%
! ATCAAGTTAGAGCATTCGAT+AGG - Chr5:61990239-61990258 None:intergenic 35.0%
! ATGAAGATTGGTTGGAAATC+TGG + Chr5:61990644-61990663 MsG0580027489.01.T01:CDS 35.0%
! GTTTTCATCAAAAACTCTGC+CGG + Chr5:61990419-61990438 MsG0580027489.01.T01:CDS 35.0%
!! AATCTTTGGAATCTTGACGT+CGG - Chr5:61989916-61989935 None:intergenic 35.0%
AAAATATGGCAGATATGCGC+CGG + Chr5:61989888-61989907 MsG0580027489.01.T01:CDS 40.0%
AAAGTTTACTACTTCCCACG+AGG + Chr5:61989942-61989961 MsG0580027489.01.T01:CDS 40.0%
ACGATCAAGAATGGTTCTTG+TGG - Chr5:61990003-61990022 None:intergenic 40.0%
ATTATCCGACAGCTATTGGT+TGG + Chr5:61990582-61990601 MsG0580027489.01.T01:CDS 40.0%
CAAGTTCACTACAGATGAAG+CGG + Chr5:61990472-61990491 MsG0580027489.01.T01:CDS 40.0%
GATCTTTCCCAAGCTTGATT+TGG + Chr5:61990256-61990275 MsG0580027489.01.T01:CDS 40.0%
GTGTATTATCCGACAGCTAT+TGG + Chr5:61990578-61990597 MsG0580027489.01.T01:CDS 40.0%
TATATGTGTACCCCCATTCT+CGG - Chr5:61990319-61990338 None:intergenic 40.0%
TCAGTAGATTACATACTGGC+TGG + Chr5:61990351-61990370 MsG0580027489.01.T01:CDS 40.0%
! GCGCATATCTGCCATATTTT+GGG - Chr5:61989888-61989907 None:intergenic 40.0%
!! ATCTTTGGAATCTTGACGTC+GGG - Chr5:61989915-61989934 None:intergenic 40.0%
!! TATTGGTTGGCGTGATTTTG+TGG + Chr5:61990595-61990614 MsG0580027489.01.T01:CDS 40.0%
!!! GATTAAGGTTTTGGATGCAG+TGG + Chr5:61990523-61990542 MsG0580027489.01.T01:CDS 40.0%
ACCTTAAAAGCCGAGAATGG+GGG + Chr5:61990306-61990325 MsG0580027489.01.T01:CDS 45.0%
ACGATGCCATGAAGATTGGT+TGG + Chr5:61990636-61990655 MsG0580027489.01.T01:CDS 45.0%
ACTACAGATGAAGCGGATGA+AGG + Chr5:61990479-61990498 MsG0580027489.01.T01:CDS 45.0%
AGACTCGTCCAAATCAAGCT+TGG - Chr5:61990267-61990286 None:intergenic 45.0%
AGATATCTGTCGGAATTCGC+AGG + Chr5:61990444-61990463 MsG0580027489.01.T01:CDS 45.0%
CGACCTTAAAAGCCGAGAAT+GGG + Chr5:61990304-61990323 MsG0580027489.01.T01:CDS 45.0%
CGCTTCATCTGTAGTGAACT+TGG - Chr5:61990474-61990493 None:intergenic 45.0%
CTCGTGTGGAACCCAAAATA+TGG + Chr5:61989874-61989893 MsG0580027489.01.T01:CDS 45.0%
GACCTTAAAAGCCGAGAATG+GGG + Chr5:61990305-61990324 MsG0580027489.01.T01:CDS 45.0%
GACTCGTCCAAATCAAGCTT+GGG - Chr5:61990266-61990285 None:intergenic 45.0%
GTTGACGATGCCATGAAGAT+TGG + Chr5:61990632-61990651 MsG0580027489.01.T01:CDS 45.0%
TCTGCCGGAAAGATATCTGT+CGG + Chr5:61990434-61990453 MsG0580027489.01.T01:CDS 45.0%
TGGACGGTAACGATCAAGAA+TGG - Chr5:61990012-61990031 None:intergenic 45.0%
TGTCTCCATCATCGTCTTCT+TGG - Chr5:61990157-61990176 None:intergenic 45.0%
TTTGGATGCAGTGGAATTGG+CGG + Chr5:61990532-61990551 MsG0580027489.01.T01:CDS 45.0%
! GGCGCATATCTGCCATATTT+TGG - Chr5:61989889-61989908 None:intergenic 45.0%
!! TCTTTGGAATCTTGACGTCG+GGG - Chr5:61989914-61989933 None:intergenic 45.0%
!!! CATATTTTGGGTTCCACACG+AGG - Chr5:61989876-61989895 None:intergenic 45.0%
!!! CCATTCTCGGCTTTTAAGGT+CGG - Chr5:61990306-61990325 None:intergenic 45.0%
!!! GGTTTTGGATGCAGTGGAAT+TGG + Chr5:61990529-61990548 MsG0580027489.01.T01:CDS 45.0%
ACAGATGAAGCGGATGAAGG+AGG + Chr5:61990482-61990501 MsG0580027489.01.T01:CDS 50.0%
ACCTCAAGCATGCGCCAATT+AGG - Chr5:61990779-61990798 None:intergenic 50.0%
AGGGGGTTCTTGGTCAGTTA+CGG - Chr5:61990117-61990136 None:intergenic 50.0%
ATGGTTCTTGTGGCAGCAGT+AGG - Chr5:61989993-61990012 None:intergenic 50.0%
CAGTTTGGCAAAGACCTCGT+CGG - Chr5:61990084-61990103 None:intergenic 50.0%
CATGTTCCAGATGACCTCGT+GGG - Chr5:61989959-61989978 None:intergenic 50.0%
CCGACCTTAAAAGCCGAGAA+TGG + Chr5:61990303-61990322 MsG0580027489.01.T01:CDS 50.0%
CCTCAAGCATGCGCCAATTA+GGG - Chr5:61990778-61990797 None:intergenic 50.0%
CGATGCATGGAATGGATGGA+CGG - Chr5:61990028-61990047 None:intergenic 50.0%
GAGACGATGCATGGAATGGA+TGG - Chr5:61990032-61990051 None:intergenic 50.0%
GGAAGAGACGATGCATGGAA+TGG - Chr5:61990036-61990055 None:intergenic 50.0%
TCAACGGAAGAGACGATGCA+TGG - Chr5:61990041-61990060 None:intergenic 50.0%
TCACGCCAACCAATAGCTGT+CGG - Chr5:61990590-61990609 None:intergenic 50.0%
TCCATCATCGTCTTCTTGGC+CGG - Chr5:61990153-61990172 None:intergenic 50.0%
TGGTTCTTGTGGCAGCAGTA+GGG - Chr5:61989992-61990011 None:intergenic 50.0%
! ACCCCCATTCTCGGCTTTTA+AGG - Chr5:61990310-61990329 None:intergenic 50.0%
! TGGTTGGCGTGATTTTGTGG+TGG + Chr5:61990598-61990617 MsG0580027489.01.T01:CDS 50.0%
!!! ATTTTGGGTTCCACACGAGG+TGG - Chr5:61989873-61989892 None:intergenic 50.0%
CCATCATCGTCTTCTTGGCC+GGG - Chr5:61990152-61990171 None:intergenic 55.0%
CCCTAATTGGCGCATGCTTG+AGG + Chr5:61990775-61990794 MsG0580027489.01.T01:CDS 55.0%
CTACTTCCCACGAGGTCATC+TGG + Chr5:61989950-61989969 MsG0580027489.01.T01:CDS 55.0%
CTTGGTCAGTTACGGGAGTC+AGG - Chr5:61990109-61990128 None:intergenic 55.0%
GCATGTTCCAGATGACCTCG+TGG - Chr5:61989960-61989979 None:intergenic 55.0%
GGGGGTTCTTGGTCAGTTAC+GGG - Chr5:61990116-61990135 None:intergenic 55.0%
GGTTCTTGTGGCAGCAGTAG+GGG - Chr5:61989991-61990010 None:intergenic 55.0%
TACGGGAGTCAGGAGCAGTT+TGG - Chr5:61990099-61990118 None:intergenic 55.0%
TCTTCTTGGCCGGGAACTAC+AGG - Chr5:61990143-61990162 None:intergenic 55.0%
TGTTGATCCTCACACCGACG+AGG + Chr5:61990067-61990086 MsG0580027489.01.T01:CDS 55.0%
CCCGGCCAAGAAGACGATGA+TGG + Chr5:61990149-61990168 MsG0580027489.01.T01:CDS 60.0%
CTACAGGAGGAGGGGGTTCT+TGG - Chr5:61990127-61990146 None:intergenic 60.0%
GCAAAGACCTCGTCGGTGTG+AGG - Chr5:61990077-61990096 None:intergenic 60.0%
TCATCCTCTGCCACCTCGTG+TGG + Chr5:61989860-61989879 MsG0580027489.01.T01:CDS 60.0%
TCTTGGCCGGGAACTACAGG+AGG - Chr5:61990140-61990159 None:intergenic 60.0%
TGGAATCTTGACGTCGGGGC+CGG - Chr5:61989910-61989929 None:intergenic 60.0%
CCCCCTCCTCCTGTAGTTCC+CGG + Chr5:61990131-61990150 MsG0580027489.01.T01:CDS 65.0%
CCGGGAACTACAGGAGGAGG+GGG - Chr5:61990134-61990153 None:intergenic 65.0%
GCCGGGAACTACAGGAGGAG+GGG - Chr5:61990135-61990154 None:intergenic 65.0%
GGCCGGGAACTACAGGAGGA+GGG - Chr5:61990136-61990155 None:intergenic 65.0%
GGTTCCACACGAGGTGGCAG+AGG - Chr5:61989867-61989886 None:intergenic 65.0%
TGGCCGGGAACTACAGGAGG+AGG - Chr5:61990137-61990156 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 61989855 61990814 61989855 ID=MsG0580027489.01;Name=MsG0580027489.01
Chr5 mRNA 61989855 61990814 61989855 ID=MsG0580027489.01.T01;Parent=MsG0580027489.01;Name=MsG0580027489.01.T01;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|319
Chr5 exon 61989855 61990814 61989855 ID=MsG0580027489.01.T01:exon:13618;Parent=MsG0580027489.01.T01
Chr5 CDS 61989855 61990814 61989855 ID=MsG0580027489.01.T01:cds;Parent=MsG0580027489.01.T01
Gene Sequence

>MsG0580027489.01.T01

ATGTCTCATCCTCTGCCACCTCGTGTGGAACCCAAAATATGGCAGATATGCGCCGGCCCCGACGTCAAGATTCCAAAGATTCACTCTAAAGTTTACTACTTCCCACGAGGTCATCTGGAACATGCATGTTCTTCCCCTACTGCTGCCACAAGAACCATTCTTGATCGTTACCGTCCATCCATTCCATGCATCGTCTCTTCCGTTGATCTCTTTGTTGATCCTCACACCGACGAGGTCTTTGCCAAACTGCTCCTGACTCCCGTAACTGACCAAGAACCCCCTCCTCCTGTAGTTCCCGGCCAAGAAGACGATGATGGAGACAATCTTGTTATCTATGTCAAGACTCTCACACAATCTGATTGTGCAAGAGTATTATGCGTACCTATCGAATGCTCTAACTTGATCTTTCCCAAGCTTGATTTGGACGAGTCTCAGAGCATCACTGTCACCGACCTTAAAAGCCGAGAATGGGGGTACACATATACCTATGCAAATCTCAGTAGATTACATACTGGCTGGTTAAATTTTGTACGAGAGAAGAAACTTGTCGCCAACGATTCTGTTGTTTTCATCAAAAACTCTGCCGGAAAGATATCTGTCGGAATTCGCAGGAACACCAAGTTCACTACAGATGAAGCGGATGAAGGAGGCGAGAATTTAACTGATGAGATTAAGGTTTTGGATGCAGTGGAATTGGCGGAGAAGAACACAGCATTTGATGTTGTGTATTATCCGACAGCTATTGGTTGGCGTGATTTTGTGGTGGATGCTAAGACTGTTGACGATGCCATGAAGATTGGTTGGAAATCTGGAATGAGAGTGAAACTTCCTTTGAAGAAATATGAATCTTCAAGTTCAAAGATGACAATTTCTCAGCTTAAGGGGACAATCTCTTTTGTCTTTAATGATTCTTCTAATGTCCCTAATTGGCGCATGCTTGAGGTACATATGCTTTCTTAA
Protein sequence

>MsG0580027489.01.T01

MSHPLPPRVEPKIWQICAGPDVKIPKIHSKVYYFPRGHLEHACSSPTAATRTILDRYRPSIPCIVSSVDLFVDPHTDEVFAKLLLTPVTDQEPPPPVVPGQEDDDGDNLVIYVKTLTQSDCARVLCVPIECSNLIFPKLDLDESQSITVTDLKSREWGYTYTYANLSRLHTGWLNFVREKKLVANDSVVFIKNSAGKISVGIRRNTKFTTDEADEGGENLTDEIKVLDAVELAEKNTAFDVVYYPTAIGWRDFVVDAKTVDDAMKIGWKSGMRVKLPLKKYESSSSKMTISQLKGTISFVFNDSSNVPNWRMLEVHMLS*