AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027495.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027495.01.T01 MTR_5g060770 71.429 252 21 4 1 251 25 226 1.15e-103 306
MsG0580027495.01.T01 MTR_5g060780 70.168 238 64 5 1 233 79 314 4.97e-102 304
MsG0580027495.01.T01 MTR_5g460920 70.168 238 64 5 1 233 79 314 2.11e-101 302
MsG0580027495.01.T01 MTR_5g061890 65.490 255 80 6 1 250 79 330 1.90e-99 297
MsG0580027495.01.T01 MTR_5g060630 54.044 272 85 9 1 233 79 349 5.67e-81 254
MsG0580027495.01.T01 MTR_5g460740 54.044 272 85 9 1 233 79 349 5.67e-81 254
MsG0580027495.01.T01 MTR_5g460910 60.714 252 26 5 1 251 42 221 8.09e-79 242
MsG0580027495.01.T01 MTR_5g061220 51.481 270 85 10 1 233 86 346 6.51e-71 228
MsG0580027495.01.T01 MTR_1g058210 47.876 259 119 7 1 248 79 332 5.24e-62 202
MsG0580027495.01.T01 MTR_5g040740 46.586 249 103 10 1 233 79 313 1.21e-52 177
MsG0580027495.01.T01 MTR_5g040880 44.262 244 114 8 1 233 78 310 8.62e-52 177
MsG0580027495.01.T01 MTR_2g024430 45.306 245 110 9 1 233 88 320 4.33e-50 173
MsG0580027495.01.T01 MTR_2g006270 44.061 261 124 11 1 250 82 331 3.13e-49 169
MsG0580027495.01.T01 MTR_2g006380 41.803 244 116 9 1 233 89 317 1.52e-43 154
MsG0580027495.01.T01 MTR_5g082140 40.800 250 118 10 1 233 79 315 9.25e-43 152
MsG0580027495.01.T01 MTR_3g073420 36.194 268 113 10 1 219 84 342 4.35e-33 127
MsG0580027495.01.T01 MTR_5g062960 55.238 105 44 3 147 250 1 103 1.23e-28 108
MsG0580027495.01.T01 MTR_1g064430 31.579 266 113 10 1 204 91 349 1.19e-24 103
MsG0580027495.01.T01 MTR_1g064430 31.579 266 113 10 1 204 104 362 1.52e-24 103
MsG0580027495.01.T01 MTR_5g062970 44.361 133 62 4 1 121 102 234 6.78e-23 94.7
MsG0580027495.01.T01 MTR_4g058930 30.705 241 108 8 34 219 108 344 6.87e-23 98.6
MsG0580027495.01.T01 MTR_4g058930 30.705 241 108 8 34 219 108 344 7.07e-23 98.6
MsG0580027495.01.T01 MTR_2g094570 28.571 273 131 9 1 219 75 337 1.31e-22 97.8
MsG0580027495.01.T01 MTR_2g094570 28.571 273 131 9 1 219 75 337 1.34e-22 97.8
MsG0580027495.01.T01 MTR_2g094570 28.571 273 131 9 1 219 131 393 1.60e-22 97.8
MsG0580027495.01.T01 MTR_1g094960 31.897 232 108 8 34 219 117 344 9.50e-22 95.5
MsG0580027495.01.T01 MTR_7g101275 30.876 217 126 8 34 233 91 300 9.54e-22 94.4
MsG0580027495.01.T01 MTR_7g101280 26.275 255 121 8 34 229 130 376 5.21e-17 81.3
MsG0580027495.01.T01 MTR_0041s0110 26.275 255 121 8 34 229 130 376 5.21e-17 81.3
MsG0580027495.01.T01 MTR_0041s0120 28.085 235 121 9 34 233 91 312 2.28e-16 79.0
MsG0580027495.01.T01 MTR_2g018690 29.457 258 135 12 1 230 93 331 7.40e-16 78.2
MsG0580027495.01.T01 MTR_2g014770 25.946 185 124 5 35 207 158 341 1.54e-15 77.0
MsG0580027495.01.T01 MTR_2g014770 25.946 185 124 5 35 207 158 341 1.55e-15 77.0
MsG0580027495.01.T01 MTR_4g088210 25.946 185 124 5 35 207 148 331 2.05e-15 76.6
MsG0580027495.01.T01 MTR_8g079492 29.224 219 118 9 35 230 44 248 2.12e-15 76.6
MsG0580027495.01.T01 MTR_4g088210 25.946 185 124 5 35 207 148 331 2.42e-15 76.6
MsG0580027495.01.T01 MTR_2g093740 31.188 202 112 9 25 203 20 217 6.46e-15 75.1
MsG0580027495.01.T01 MTR_2g093740 31.188 202 112 9 25 203 150 347 7.38e-15 75.1
MsG0580027495.01.T01 MTR_2g093740 31.188 202 112 9 25 203 20 217 7.52e-15 75.1
MsG0580027495.01.T01 MTR_2g093740 31.188 202 112 9 25 203 150 347 7.65e-15 75.1
MsG0580027495.01.T01 MTR_4g060460 27.273 286 162 13 35 280 166 445 8.61e-15 74.7
MsG0580027495.01.T01 MTR_2g093740 31.188 202 112 9 25 203 150 347 9.36e-15 74.7
MsG0580027495.01.T01 MTR_4g124900 28.333 180 118 4 35 203 126 305 1.28e-14 74.3
MsG0580027495.01.T01 MTR_2g043250 28.333 180 118 4 35 203 126 305 1.34e-14 74.3
MsG0580027495.01.T01 MTR_4g124900 28.333 180 118 4 35 203 126 305 1.40e-14 74.3
MsG0580027495.01.T01 MTR_5g076270 27.755 245 133 10 1 219 94 320 1.76e-14 73.9
MsG0580027495.01.T01 MTR_4g060460 31.579 190 109 9 35 208 166 350 2.06e-14 73.6
MsG0580027495.01.T01 MTR_3g064050 27.826 230 126 9 1 204 96 311 2.44e-14 73.6
MsG0580027495.01.T01 MTR_2g005240 26.721 247 145 9 1 226 92 323 7.24e-14 72.0
MsG0580027495.01.T01 MTR_8g100050 26.596 188 121 5 34 207 161 345 3.83e-13 69.7
MsG0580027495.01.T01 MTR_8g100050 26.596 188 121 5 34 207 161 345 4.51e-13 69.7
MsG0580027495.01.T01 MTR_8g079492 27.953 254 144 11 1 230 92 330 6.38e-13 69.3
MsG0580027495.01.T01 MTR_8g079492 27.953 254 144 11 1 230 92 330 6.44e-13 69.3
MsG0580027495.01.T01 MTR_7g062540 26.180 233 144 9 1 216 83 304 2.02e-12 67.8
MsG0580027495.01.T01 MTR_4g021580 26.446 242 155 9 1 229 88 319 2.45e-12 67.4
MsG0580027495.01.T01 MTR_4g021580 26.446 242 155 9 1 229 88 319 2.47e-12 67.4
MsG0580027495.01.T01 MTR_2g093740 28.837 215 113 9 25 203 20 230 5.29e-12 66.2
MsG0580027495.01.T01 MTR_2g093740 28.837 215 113 9 25 203 150 360 6.29e-12 66.2
MsG0580027495.01.T01 MTR_2g093740 28.837 215 113 9 25 203 150 360 6.44e-12 66.2
MsG0580027495.01.T01 MTR_2g093740 28.837 215 113 9 25 203 20 230 7.29e-12 65.9
MsG0580027495.01.T01 MTR_2g093740 28.182 220 118 9 25 208 150 365 8.60e-12 65.9
MsG0580027495.01.T01 MTR_8g446900 27.119 177 114 5 34 196 61 236 2.16e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027495.01.T01 AT1G77850 31.955 266 132 9 1 221 81 342 1.17e-28 115
MsG0580027495.01.T01 AT1G77850 31.955 266 132 9 1 221 81 342 1.46e-28 115
MsG0580027495.01.T01 AT4G30080 31.179 263 123 11 24 235 109 364 3.93e-23 99.4
MsG0580027495.01.T01 AT2G28350 27.888 251 125 8 21 219 97 343 1.23e-20 92.0
MsG0580027495.01.T01 AT2G28350 27.888 251 125 8 21 219 97 343 1.27e-20 92.0
MsG0580027495.01.T01 AT2G33860 29.474 190 113 7 35 208 2 186 3.02e-17 81.6
MsG0580027495.01.T01 AT2G33860 29.474 190 113 7 35 208 159 343 4.04e-17 81.6
MsG0580027495.01.T01 AT1G30330 30.396 227 124 9 1 204 95 310 1.95e-16 79.7
MsG0580027495.01.T01 AT1G30330 30.396 227 124 9 1 204 95 310 1.95e-16 79.7
MsG0580027495.01.T01 AT5G37020 27.559 254 145 11 1 230 92 330 1.70e-15 77.0
MsG0580027495.01.T01 AT5G37020 27.559 254 145 11 1 230 92 330 1.72e-15 77.0
MsG0580027495.01.T01 AT5G37020 28.311 219 120 9 35 230 31 235 1.82e-15 77.0
MsG0580027495.01.T01 AT1G59750 27.049 244 154 9 1 230 91 324 2.24e-15 76.6
MsG0580027495.01.T01 AT1G59750 27.049 244 154 9 1 230 91 324 2.33e-15 76.6
MsG0580027495.01.T01 AT1G59750 27.049 244 154 9 1 230 91 324 2.76e-15 76.3
MsG0580027495.01.T01 AT1G59750 27.049 244 154 9 1 230 91 324 2.76e-15 76.3
MsG0580027495.01.T01 AT2G46530 28.636 220 131 8 1 203 112 322 3.99e-15 75.9
MsG0580027495.01.T01 AT2G46530 28.636 220 131 8 1 203 91 301 4.52e-15 75.5
MsG0580027495.01.T01 AT1G34390 26.437 261 165 8 2 248 97 344 6.78e-15 75.1
MsG0580027495.01.T01 AT1G30330 30.396 227 124 9 1 204 93 308 1.30e-14 74.3
MsG0580027495.01.T01 AT5G62000 25.328 229 138 7 1 207 130 347 2.36e-14 73.6
MsG0580027495.01.T01 AT5G62000 25.328 229 138 7 1 207 130 347 2.36e-14 73.6
MsG0580027495.01.T01 AT5G62000 25.328 229 138 7 1 207 130 347 2.36e-14 73.6
MsG0580027495.01.T01 AT5G62000 25.328 229 138 7 1 207 130 347 2.36e-14 73.6
MsG0580027495.01.T01 AT5G62000 25.328 229 138 7 1 207 130 347 2.36e-14 73.6
MsG0580027495.01.T01 AT1G34310 27.419 248 146 10 2 233 97 326 4.56e-14 72.8
MsG0580027495.01.T01 AT3G61830 27.273 220 134 8 1 203 95 305 4.68e-14 72.4
MsG0580027495.01.T01 AT3G61830 27.273 220 134 8 1 203 44 254 4.91e-14 72.4
MsG0580027495.01.T01 AT1G35520 26.639 244 145 10 2 229 97 322 7.59e-14 72.0
MsG0580027495.01.T01 AT2G46530 28.500 200 120 7 18 203 24 214 1.04e-13 71.2
MsG0580027495.01.T01 AT1G34410 25.940 266 164 10 1 248 96 346 1.25e-13 71.2
MsG0580027495.01.T01 AT5G20730 29.508 183 117 5 32 202 124 306 2.29e-13 70.9
MsG0580027495.01.T01 AT5G20730 29.508 183 117 5 32 202 124 306 2.55e-13 70.5
MsG0580027495.01.T01 AT5G20730 30.055 183 115 6 32 202 124 305 3.74e-13 70.1
MsG0580027495.01.T01 AT4G23980 24.521 261 178 7 1 248 82 336 1.30e-12 68.2
MsG0580027495.01.T01 AT4G23980 24.521 261 178 7 1 248 82 336 1.32e-12 68.2
MsG0580027495.01.T01 AT1G35240 26.038 265 163 10 2 248 97 346 1.35e-12 68.2
MsG0580027495.01.T01 AT5G60450 28.293 205 123 8 24 208 160 360 2.44e-12 67.4
MsG0580027495.01.T01 AT5G60450 28.293 205 123 8 24 208 136 336 2.46e-12 67.4
MsG0580027495.01.T01 AT1G35540 25.806 248 150 10 2 233 97 326 2.49e-12 67.4
MsG0580027495.01.T01 AT1G19220 36.634 101 54 3 35 125 126 226 8.80e-12 65.9
MsG0580027495.01.T01 AT1G19850 31.111 135 83 3 1 125 113 247 1.07e-11 65.9
MsG0580027495.01.T01 AT1G19850 31.111 135 83 3 1 125 124 258 1.10e-11 65.5

Find 65 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAAAACAACAGAATCTT+TGG 0.216238 5:-62050874 None:intergenic
ATGAAGATTGGTTGGGAATC+TGG 0.244310 5:+62051110 MsG0580027495.01.T01:CDS
CCTCCTCCTCCTGTTGTTCC+TGG 0.246154 5:+62050609 MsG0580027495.01.T01:CDS
ATTCTTCCAATGTCCCTAAT+TGG 0.255553 5:+62051225 MsG0580027495.01.T01:CDS
TGTTTCCATCGTCGTCTTCT+TGG 0.258015 5:-62050632 None:intergenic
ACCTCAAGAATGTGCCAATT+AGG 0.262799 5:-62051239 None:intergenic
CTTTCACCTGTTTCAGCTGC+AGG 0.305850 5:-62050948 None:intergenic
GGCAACAAGTCAGCCGATTT+AGG 0.332336 5:-62052255 None:intergenic
AGATATTAGTTGGAATTTGC+AGG 0.349043 5:+62050913 MsG0580027495.01.T01:CDS
GACTTCCCTGCAGCTGAAAC+AGG 0.367664 5:+62050942 MsG0580027495.01.T01:CDS
CCTCAAGAATGTGCCAATTA+GGG 0.384917 5:-62051238 None:intergenic
CAGCTGGCATGCAGGGAGCC+AGG 0.385904 5:+62052106 MsG0580027495.01.T01:intron
AGATTCCCAACCAATCTTCA+TGG 0.388833 5:-62051108 None:intergenic
AAGAATCTGATACAGATAAA+TGG 0.391533 5:-62052134 None:intergenic
GATTTCACCAAGTCAAGCTT+TGG 0.394718 5:-62050738 None:intergenic
GGAACAACAGGAGGAGGAGG+AGG 0.408299 5:-62050606 None:intergenic
GGAGGATATTGGGCAGTTAC+CGG 0.415046 5:-62050585 None:intergenic
CCATCGTCGTCTTCTTGGCC+AGG 0.419252 5:-62050627 None:intergenic
CGACCTTAAAAGCCAAGAAT+GGG 0.432454 5:+62050779 MsG0580027495.01.T01:CDS
ATACATTGGCAGTCCTAAAT+CGG 0.439684 5:+62052242 MsG0580027495.01.T01:CDS
TCTGCTGGAAAGATATTAGT+TGG 0.452740 5:+62050903 MsG0580027495.01.T01:CDS
TCTTCTTGGCCAGGAACAAC+AGG 0.455566 5:-62050618 None:intergenic
GTAGATGATTCCATGAAGAT+TGG 0.467615 5:+62051098 MsG0580027495.01.T01:CDS
TCACACCATTTCCTAGCTGT+TGG 0.474083 5:-62051053 None:intergenic
TACCGGAGTGAGGAGCAGTT+TGG 0.479172 5:-62050568 None:intergenic
ATTATCCAACAGCTAGGAAA+TGG 0.485842 5:+62051048 MsG0580027495.01.T01:CDS
ATGATTCCATGAAGATTGGT+TGG 0.491255 5:+62051102 MsG0580027495.01.T01:CDS
TGATTCCATGAAGATTGGTT+GGG 0.496383 5:+62051103 MsG0580027495.01.T01:CDS
GACAAGGGTGATGGTTTCAT+CGG 0.500866 5:+62052171 MsG0580027495.01.T01:CDS
CCGACCTTAAAAGCCAAGAA+TGG 0.501034 5:+62050778 MsG0580027495.01.T01:CDS
GATCTTTCCAAAGCTTGACT+TGG 0.502331 5:+62050731 MsG0580027495.01.T01:CDS
CCAGGAACAACAGGAGGAGG+AGG 0.515849 5:-62050609 None:intergenic
ACTTGTTGCTTGGTTCATTG+AGG 0.515871 5:-62052276 None:intergenic
CTGAAACAGGTGAAAGAGGC+AGG 0.517841 5:+62050955 MsG0580027495.01.T01:CDS
TTTGAATGCAGTGGAATTGG+CGG 0.522289 5:+62050998 MsG0580027495.01.T01:CDS
TTTCACCTGTTTCAGCTGCA+GGG 0.529812 5:-62050947 None:intergenic
AAAGGCATATTATCAGCCTA+AGG 0.530867 5:+62051178 MsG0580027495.01.T01:CDS
ACAAGGGTGATGGTTTCATC+GGG 0.532238 5:+62052172 MsG0580027495.01.T01:CDS
CCCTAATTGGCACATTCTTG+AGG 0.538147 5:+62051238 MsG0580027495.01.T01:CDS
CGCCAAACTGCTCCTCACTC+CGG 0.538251 5:+62050566 MsG0580027495.01.T01:CDS
TACAGATAAATGGTCATGCC+TGG 0.539273 5:-62052124 None:intergenic
ATCGGGAACAGTACAATGGA+AGG 0.547072 5:+62052189 MsG0580027495.01.T01:CDS
AAGGCATATTATCAGCCTAA+GGG 0.550266 5:+62051179 MsG0580027495.01.T01:CDS
GCAGCTGAAACAGGTGAAAG+AGG 0.552603 5:+62050951 MsG0580027495.01.T01:CDS
ACAGTAGAGATTGTCCCCTT+AGG 0.555913 5:-62051194 None:intergenic
AGACGAGTCTTCAAATTCAA+AGG 0.557318 5:+62051160 MsG0580027495.01.T01:CDS
AATGTGCCAATTAGGGACAT+TGG 0.568650 5:-62051231 None:intergenic
TGGCCAGGAACAACAGGAGG+AGG 0.574874 5:-62050612 None:intergenic
GGAATTGGCGGACAAGAACA+TGG 0.578093 5:+62051010 MsG0580027495.01.T01:CDS
TTGTGTATTATCCAACAGCT+AGG 0.584708 5:+62051042 MsG0580027495.01.T01:CDS
TCAGTAGACTACGTACTGGC+TGG 0.603214 5:+62050820 MsG0580027495.01.T01:CDS
CAGGAATTTAACTGAGAGTG+CGG 0.604399 5:+62050974 MsG0580027495.01.T01:CDS
ATCAAGTCAGCGCATTCATG+AGG 0.615421 5:-62050711 None:intergenic
AAACTCAGTAGACTACGTAC+TGG 0.617424 5:+62050816 MsG0580027495.01.T01:CDS
TCTGACACAGAGCTATACAT+TGG 0.617625 5:+62052228 MsG0580027495.01.T01:CDS
AGTACAATGGAAGGGTTGAG+TGG 0.621430 5:+62052198 MsG0580027495.01.T01:CDS
ACCTTAAAAGCCAAGAATGG+GGG 0.634733 5:+62050781 MsG0580027495.01.T01:CDS
GACCTTAAAAGCCAAGAATG+GGG 0.635286 5:+62050780 MsG0580027495.01.T01:CDS
AGGCATATTATCAGCCTAAG+GGG 0.646519 5:+62051180 MsG0580027495.01.T01:CDS
ATTGGGCAGTTACCGGAGTG+AGG 0.647004 5:-62050578 None:intergenic
TTTCATCGGGAACAGTACAA+TGG 0.656817 5:+62052185 MsG0580027495.01.T01:CDS
TCTTGGCCAGGAACAACAGG+AGG 0.662003 5:-62050615 None:intergenic
TCGGGAACAGTACAATGGAA+GGG 0.662848 5:+62052190 MsG0580027495.01.T01:CDS
CCTGGCCAAGAAGACGACGA+TGG 0.698976 5:+62050627 MsG0580027495.01.T01:CDS
TAGTCTACTGAGTTTCACGT+AGG 0.730433 5:-62050808 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAAGTTTCTTATCAAT+TGG - Chr5:62051670-62051689 None:intergenic 20.0%
!! TCAAACAAATCATGAAATTA+TGG - Chr5:62051328-62051347 None:intergenic 20.0%
!!! CAATGTTTTAGAATTACATT+TGG - Chr5:62051488-62051507 None:intergenic 20.0%
!!! TTTGTATTTTGCAAGATTTT+AGG - Chr5:62051844-62051863 None:intergenic 20.0%
! AAGAATCTGATACAGATAAA+TGG - Chr5:62052137-62052156 None:intergenic 25.0%
! AATTAACCTATGATAAAGAG+GGG - Chr5:62051813-62051832 None:intergenic 25.0%
! AGAAGAATATGGAATTTGTA+GGG - Chr5:62051965-62051984 None:intergenic 25.0%
! CAATTAACCTATGATAAAGA+GGG - Chr5:62051814-62051833 None:intergenic 25.0%
! CTCTTTATCATAGGTTAATT+GGG + Chr5:62051813-62051832 MsG0580027495.01.T01:intron 25.0%
!!! AACAATCGATTCTAAAATGT+TGG - Chr5:62051539-62051558 None:intergenic 25.0%
!!! TCAAAAGTTTTGAATGACAA+GGG + Chr5:62052156-62052175 MsG0580027495.01.T01:CDS 25.0%
!!! TTCAAAAGTTTTGAATGACA+AGG + Chr5:62052155-62052174 MsG0580027495.01.T01:CDS 25.0%
AAGAATATGGAATTTGTAGG+GGG - Chr5:62051963-62051982 None:intergenic 30.0%
AGATATTAGTTGGAATTTGC+AGG + Chr5:62050913-62050932 MsG0580027495.01.T01:CDS 30.0%
ATACAAACATAGTCAATCCT+TGG + Chr5:62051857-62051876 MsG0580027495.01.T01:intron 30.0%
CATGAAAACAACAGAATCTT+TGG - Chr5:62050877-62050896 None:intergenic 30.0%
CCAATTAACCTATGATAAAG+AGG - Chr5:62051815-62051834 None:intergenic 30.0%
CCTCTTTATCATAGGTTAAT+TGG + Chr5:62051812-62051831 MsG0580027495.01.T01:intron 30.0%
GAAGAATATGGAATTTGTAG+GGG - Chr5:62051964-62051983 None:intergenic 30.0%
GAGAAGAATATGGAATTTGT+AGG - Chr5:62051966-62051985 None:intergenic 30.0%
GAGTTACCTAATTCAACAAT+GGG + Chr5:62052045-62052064 MsG0580027495.01.T01:intron 30.0%
GTAATTGATGGAGAAGAATA+TGG - Chr5:62051976-62051995 None:intergenic 30.0%
TACAATGAGAAATGCTTAGA+AGG - Chr5:62051603-62051622 None:intergenic 30.0%
TTATCATAGGTTAATTGGGA+TGG + Chr5:62051817-62051836 MsG0580027495.01.T01:intron 30.0%
! ACATTTGGAACTTATCCTAT+AGG - Chr5:62051473-62051492 None:intergenic 30.0%
! GTTTGATAATTGTGTTGAAG+TGG + Chr5:62051342-62051361 MsG0580027495.01.T01:intron 30.0%
!! GATTCTGATAATTTTTCAGC+TGG + Chr5:62052090-62052109 MsG0580027495.01.T01:intron 30.0%
!!! GTCTAGGACTTTTTTTTGAA+GGG - Chr5:62051924-62051943 None:intergenic 30.0%
!!! TGTCTAGGACTTTTTTTTGA+AGG - Chr5:62051925-62051944 None:intergenic 30.0%
AAACACTCCTATTGCTAAGT+AGG + Chr5:62051622-62051641 MsG0580027495.01.T01:intron 35.0%
AAGGATCCCATTGTTGAATT+AGG - Chr5:62052054-62052073 None:intergenic 35.0%
AAGGCATATTATCAGCCTAA+GGG + Chr5:62051179-62051198 MsG0580027495.01.T01:CDS 35.0%
ACTCCTACATAGCAATGAAA+AGG - Chr5:62052029-62052048 None:intergenic 35.0%
ACTTCGTAGATTCTTCTGTT+TGG + Chr5:62051427-62051446 MsG0580027495.01.T01:intron 35.0%
AGAATATGGAATTTGTAGGG+GGG - Chr5:62051962-62051981 None:intergenic 35.0%
AGACGAGTCTTCAAATTCAA+AGG + Chr5:62051160-62051179 MsG0580027495.01.T01:CDS 35.0%
ATACATTGGCAGTCCTAAAT+CGG + Chr5:62052242-62052261 MsG0580027495.01.T01:CDS 35.0%
ATGATTCCATGAAGATTGGT+TGG + Chr5:62051102-62051121 MsG0580027495.01.T01:CDS 35.0%
ATTATCCAACAGCTAGGAAA+TGG + Chr5:62051048-62051067 MsG0580027495.01.T01:CDS 35.0%
ATTCTTCCAATGTCCCTAAT+TGG + Chr5:62051225-62051244 MsG0580027495.01.T01:CDS 35.0%
ATTCTTCCCCTCTTTATCAT+AGG + Chr5:62051804-62051823 MsG0580027495.01.T01:intron 35.0%
CTCCTACATAGCAATGAAAA+GGG - Chr5:62052028-62052047 None:intergenic 35.0%
GGAGTTACCTAATTCAACAA+TGG + Chr5:62052044-62052063 MsG0580027495.01.T01:intron 35.0%
GTAGATGATTCCATGAAGAT+TGG + Chr5:62051098-62051117 MsG0580027495.01.T01:CDS 35.0%
TATGATAAAGAGGGGAAGAA+TGG - Chr5:62051805-62051824 None:intergenic 35.0%
TCAAGATCCTACTTAGCAAT+AGG - Chr5:62051632-62051651 None:intergenic 35.0%
TCTGCTGGAAAGATATTAGT+TGG + Chr5:62050903-62050922 MsG0580027495.01.T01:CDS 35.0%
TTGTGTATTATCCAACAGCT+AGG + Chr5:62051042-62051061 MsG0580027495.01.T01:CDS 35.0%
! AAAGGCATATTATCAGCCTA+AGG + Chr5:62051178-62051197 MsG0580027495.01.T01:CDS 35.0%
! GAAATGGTGTGATTTTGTGA+TGG + Chr5:62051064-62051083 MsG0580027495.01.T01:CDS 35.0%
! GTTTTCATGAAAAACTCTGC+TGG + Chr5:62050888-62050907 MsG0580027495.01.T01:CDS 35.0%
! TGATTCCATGAAGATTGGTT+GGG + Chr5:62051103-62051122 MsG0580027495.01.T01:CDS 35.0%
! TTCCCTTTTCATTGCTATGT+AGG + Chr5:62052023-62052042 MsG0580027495.01.T01:intron 35.0%
!! CGATTCTAAAATGTTGGAGA+TGG - Chr5:62051533-62051552 None:intergenic 35.0%
!! TGTTGTGAGAGTTTTGACAT+AGG - Chr5:62050664-62050683 None:intergenic 35.0%
!!! GGACTTTTTTTTGAAGGGAA+TGG - Chr5:62051919-62051938 None:intergenic 35.0%
!!! TGATTTTGTGATGGATGCTA+AGG + Chr5:62051073-62051092 MsG0580027495.01.T01:CDS 35.0%
AAACATAGTCAATCCTTGGC+AGG + Chr5:62051861-62051880 MsG0580027495.01.T01:intron 40.0%
AAACTCAGTAGACTACGTAC+TGG + Chr5:62050816-62050835 MsG0580027495.01.T01:CDS 40.0%
AATGTGCCAATTAGGGACAT+TGG - Chr5:62051234-62051253 None:intergenic 40.0%
ACCTCAAGAATGTGCCAATT+AGG - Chr5:62051242-62051261 None:intergenic 40.0%
ACCTTAAAAGCCAAGAATGG+GGG + Chr5:62050781-62050800 MsG0580027495.01.T01:CDS 40.0%
AGATTCCCAACCAATCTTCA+TGG - Chr5:62051111-62051130 None:intergenic 40.0%
AGGCATATTATCAGCCTAAG+GGG + Chr5:62051180-62051199 MsG0580027495.01.T01:CDS 40.0%
ATAGCAATGAAAAGGGAAGC+TGG - Chr5:62052021-62052040 None:intergenic 40.0%
CAGGAATTTAACTGAGAGTG+CGG + Chr5:62050974-62050993 MsG0580027495.01.T01:CDS 40.0%
CCTCAAGAATGTGCCAATTA+GGG - Chr5:62051241-62051260 None:intergenic 40.0%
CGACCTTAAAAGCCAAGAAT+GGG + Chr5:62050779-62050798 MsG0580027495.01.T01:CDS 40.0%
GACCTTAAAAGCCAAGAATG+GGG + Chr5:62050780-62050799 MsG0580027495.01.T01:CDS 40.0%
GATCTTTCCAAAGCTTGACT+TGG + Chr5:62050731-62050750 MsG0580027495.01.T01:CDS 40.0%
GATTTCACCAAGTCAAGCTT+TGG - Chr5:62050741-62050760 None:intergenic 40.0%
TACAGATAAATGGTCATGCC+TGG - Chr5:62052127-62052146 None:intergenic 40.0%
TAGTCTACTGAGTTTCACGT+AGG - Chr5:62050811-62050830 None:intergenic 40.0%
TATCAGAATCCAACCACGTT+TGG - Chr5:62052080-62052099 None:intergenic 40.0%
TCTGACACAGAGCTATACAT+TGG + Chr5:62052228-62052247 MsG0580027495.01.T01:CDS 40.0%
TTTCATCGGGAACAGTACAA+TGG + Chr5:62052185-62052204 MsG0580027495.01.T01:CDS 40.0%
TTTGAATGCAGTGGAATTGG+CGG + Chr5:62050998-62051017 MsG0580027495.01.T01:CDS 40.0%
! ATGAAGATTGGTTGGGAATC+TGG + Chr5:62051110-62051129 MsG0580027495.01.T01:CDS 40.0%
! GGTATTGAGGCAGTAATTGA+TGG - Chr5:62051988-62052007 None:intergenic 40.0%
!! AAGCTAGCTTTGTGTCCTAT+AGG + Chr5:62051455-62051474 MsG0580027495.01.T01:intron 40.0%
!! AATTTTTCAGCTGGCATGCA+GGG + Chr5:62052099-62052118 MsG0580027495.01.T01:intron 40.0%
!! GTTTTGAATGACAAGGGTGA+TGG + Chr5:62052162-62052181 MsG0580027495.01.T01:CDS 40.0%
!! TAATTTTTCAGCTGGCATGC+AGG + Chr5:62052098-62052117 MsG0580027495.01.T01:intron 40.0%
!!! CCATTCTTGGCTTTTAAGGT+CGG - Chr5:62050781-62050800 None:intergenic 40.0%
!!! GGTTTTGAATGCAGTGGAAT+TGG + Chr5:62050995-62051014 MsG0580027495.01.T01:CDS 40.0%
ACAGTAGAGATTGTCCCCTT+AGG - Chr5:62051197-62051216 None:intergenic 45.0%
AGTACAATGGAAGGGTTGAG+TGG + Chr5:62052198-62052217 MsG0580027495.01.T01:CDS 45.0%
ATCAAGTCAGCGCATTCATG+AGG - Chr5:62050714-62050733 None:intergenic 45.0%
ATCCTTGAACCAAACGTGGT+TGG + Chr5:62052068-62052087 MsG0580027495.01.T01:intron 45.0%
ATCGGGAACAGTACAATGGA+AGG + Chr5:62052189-62052208 MsG0580027495.01.T01:CDS 45.0%
CCCTAATTGGCACATTCTTG+AGG + Chr5:62051238-62051257 MsG0580027495.01.T01:CDS 45.0%
CCGACCTTAAAAGCCAAGAA+TGG + Chr5:62050778-62050797 MsG0580027495.01.T01:CDS 45.0%
GAAGAACACTGAGCATGTCT+AGG - Chr5:62051940-62051959 None:intergenic 45.0%
GGGAATGGTAGATCTAGTGA+AGG - Chr5:62051904-62051923 None:intergenic 45.0%
GTTGGAGATGGAGACTCTAA+TGG - Chr5:62051521-62051540 None:intergenic 45.0%
TCACACCATTTCCTAGCTGT+TGG - Chr5:62051056-62051075 None:intergenic 45.0%
TCGGGAACAGTACAATGGAA+GGG + Chr5:62052190-62052209 MsG0580027495.01.T01:CDS 45.0%
TGTTTCCATCGTCGTCTTCT+TGG - Chr5:62050635-62050654 None:intergenic 45.0%
TTTCACCTGTTTCAGCTGCA+GGG - Chr5:62050950-62050969 None:intergenic 45.0%
! ACAAGGGTGATGGTTTCATC+GGG + Chr5:62052172-62052191 MsG0580027495.01.T01:CDS 45.0%
! ATCCAACCACGTTTGGTTCA+AGG - Chr5:62052073-62052092 None:intergenic 45.0%
! GACAAGGGTGATGGTTTCAT+CGG + Chr5:62052171-62052190 MsG0580027495.01.T01:CDS 45.0%
!! ACCCCCATTCTTGGCTTTTA+AGG - Chr5:62050785-62050804 None:intergenic 45.0%
AAAAGGGAAGCTGGTGGTAG+AGG - Chr5:62052012-62052031 None:intergenic 50.0%
AGGAGGAGGAGGAGGATATT+GGG - Chr5:62050598-62050617 None:intergenic 50.0%
CTGAAACAGGTGAAAGAGGC+AGG + Chr5:62050955-62050974 MsG0580027495.01.T01:CDS 50.0%
CTTTCACCTGTTTCAGCTGC+AGG - Chr5:62050951-62050970 None:intergenic 50.0%
GCAATGAAAAGGGAAGCTGG+TGG - Chr5:62052018-62052037 None:intergenic 50.0%
GCAGCTGAAACAGGTGAAAG+AGG + Chr5:62050951-62050970 MsG0580027495.01.T01:CDS 50.0%
GGAGGATATTGGGCAGTTAC+CGG - Chr5:62050588-62050607 None:intergenic 50.0%
TCTTCTTGGCCAGGAACAAC+AGG - Chr5:62050621-62050640 None:intergenic 50.0%
TGGGATCCTTGAACCAAACG+TGG + Chr5:62052064-62052083 MsG0580027495.01.T01:intron 50.0%
TTGCAAGCTTCAACCTGCCA+AGG - Chr5:62051877-62051896 None:intergenic 50.0%
! GGAATTGGCGGACAAGAACA+TGG + Chr5:62051010-62051029 MsG0580027495.01.T01:CDS 50.0%
! GGCAACAAGTCAGCCGATTT+AGG - Chr5:62052258-62052277 None:intergenic 50.0%
! TCAGTAGACTACGTACTGGC+TGG + Chr5:62050820-62050839 MsG0580027495.01.T01:CDS 50.0%
!!! GAGTGCGGTTTTGAATGCAG+TGG + Chr5:62050989-62051008 MsG0580027495.01.T01:CDS 50.0%
ATTGGGCAGTTACCGGAGTG+AGG - Chr5:62050581-62050600 None:intergenic 55.0%
GACTTCCCTGCAGCTGAAAC+AGG + Chr5:62050942-62050961 MsG0580027495.01.T01:CDS 55.0%
GAGGAGGAGGAGGAGGATAT+TGG - Chr5:62050599-62050618 None:intergenic 55.0%
TACCGGAGTGAGGAGCAGTT+TGG - Chr5:62050571-62050590 None:intergenic 55.0%
TCTTGGCCAGGAACAACAGG+AGG - Chr5:62050618-62050637 None:intergenic 55.0%
TGGTGGTAGAGGCGGTATTG+AGG - Chr5:62052001-62052020 None:intergenic 55.0%
ACAACAGGAGGAGGAGGAGG+AGG - Chr5:62050606-62050625 None:intergenic 60.0%
AGGGAAGCTGGTGGTAGAGG+CGG - Chr5:62052009-62052028 None:intergenic 60.0%
CCAGGAACAACAGGAGGAGG+AGG - Chr5:62050612-62050631 None:intergenic 60.0%
CCATCGTCGTCTTCTTGGCC+AGG - Chr5:62050630-62050649 None:intergenic 60.0%
CCTCCTCCTCCTGTTGTTCC+TGG + Chr5:62050609-62050628 MsG0580027495.01.T01:CDS 60.0%
CCTGGCCAAGAAGACGACGA+TGG + Chr5:62050627-62050646 MsG0580027495.01.T01:CDS 60.0%
CGCCAAACTGCTCCTCACTC+CGG + Chr5:62050566-62050585 MsG0580027495.01.T01:CDS 60.0%
CGTAGGTGCACCCCCATTCT+TGG - Chr5:62050794-62050813 None:intergenic 60.0%
GGAACAACAGGAGGAGGAGG+AGG - Chr5:62050609-62050628 None:intergenic 60.0%
TGGCCAGGAACAACAGGAGG+AGG - Chr5:62050615-62050634 None:intergenic 60.0%
CAGCTGGCATGCAGGGAGCC+AGG + Chr5:62052106-62052125 MsG0580027495.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 62050561 62052284 62050561 ID=MsG0580027495.01;Name=MsG0580027495.01
Chr5 mRNA 62050561 62052284 62050561 ID=MsG0580027495.01.T01;Parent=MsG0580027495.01;Name=MsG0580027495.01.T01;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|0|0.5|2|0|287
Chr5 exon 62050561 62051259 62050561 ID=MsG0580027495.01.T01:exon:22464;Parent=MsG0580027495.01.T01
Chr5 exon 62052120 62052284 62052120 ID=MsG0580027495.01.T01:exon:22465;Parent=MsG0580027495.01.T01
Chr5 CDS 62050561 62051259 62050561 ID=MsG0580027495.01.T01:cds;Parent=MsG0580027495.01.T01
Chr5 CDS 62052120 62052284 62052120 ID=MsG0580027495.01.T01:cds;Parent=MsG0580027495.01.T01
Gene Sequence

>MsG0580027495.01.T01

GTTTTCGCCAAACTGCTCCTCACTCCGGTAACTGCCCAATATCCTCCTCCTCCTCCTCCTGTTGTTCCTGGCCAAGAAGACGACGATGGAAACAATCTTTCCTATGTCAAAACTCTCACAACAACTGATACTAAATCTGTATTCAATATACCTCATGAATGCGCTGACTTGATCTTTCCAAAGCTTGACTTGGTGAAATCTCAAAACATCACTGTCACCGACCTTAAAAGCCAAGAATGGGGGTGCACCTACGTGAAACTCAGTAGACTACGTACTGGCTGGTCTCACTTTGTGAAAGAGAAGAAACTCGTCGCCAAAGATTCTGTTGTTTTCATGAAAAACTCTGCTGGAAAGATATTAGTTGGAATTTGCAGGAACACTGACTTCCCTGCAGCTGAAACAGGTGAAAGAGGCAGGAATTTAACTGAGAGTGCGGTTTTGAATGCAGTGGAATTGGCGGACAAGAACATGGAGTTTGAAGTTGTGTATTATCCAACAGCTAGGAAATGGTGTGATTTTGTGATGGATGCTAAGGTTGTAGATGATTCCATGAAGATTGGTTGGGAATCTGGAATTAGAGTCAAACTTACGTTGAAGAAAGACGAGTCTTCAAATTCAAAGGCATATTATCAGCCTAAGGGGACAATCTCTACTGTCTTTAATTATTCTTCCAATGTCCCTAATTGGCACATTCTTGAGGGAGCCAGGCATGACCATTTATCTGTATCAGATTCTTCAAAAGTTTTGAATGACAAGGGTGATGGTTTCATCGGGAACAGTACAATGGAAGGGTTGAGTGGTACTTTGTCTGACACAGAGCTATACATTGGCAGTCCTAAATCGGCTGACTTGTTGCCTCAATGA

Protein sequence

>MsG0580027495.01.T01

VFAKLLLTPVTAQYPPPPPPVVPGQEDDDGNNLSYVKTLTTTDTKSVFNIPHECADLIFPKLDLVKSQNITVTDLKSQEWGCTYVKLSRLRTGWSHFVKEKKLVAKDSVVFMKNSAGKILVGICRNTDFPAAETGERGRNLTESAVLNAVELADKNMEFEVVYYPTARKWCDFVMDAKVVDDSMKIGWESGIRVKLTLKKDESSNSKAYYQPKGTISTVFNYSSNVPNWHILEGARHDHLSVSDSSKVLNDKGDGFIGNSTMEGLSGTLSDTELYIGSPKSADLLPQ*