Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580027495.01.T01 | AES97839.1 | 71.429 | 252 | 21 | 4 | 1 | 251 | 25 | 226 | 9.51E-100 | 306 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580027495.01.T01 | Q84WU6 | 31.955 | 266 | 132 | 9 | 1 | 221 | 81 | 342 | 1.43E-27 | 115 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580027495.01.T01 | G7K9Z0 | 71.429 | 252 | 21 | 4 | 1 | 251 | 25 | 226 | 4.54e-100 | 306 |
Gene ID | Type | Classification |
---|---|---|
MsG0580027495.01.T01 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580027495.01.T01 | MTR_5g060770 | 71.429 | 252 | 21 | 4 | 1 | 251 | 25 | 226 | 1.15e-103 | 306 |
MsG0580027495.01.T01 | MTR_5g060780 | 70.168 | 238 | 64 | 5 | 1 | 233 | 79 | 314 | 4.97e-102 | 304 |
MsG0580027495.01.T01 | MTR_5g460920 | 70.168 | 238 | 64 | 5 | 1 | 233 | 79 | 314 | 2.11e-101 | 302 |
MsG0580027495.01.T01 | MTR_5g061890 | 65.490 | 255 | 80 | 6 | 1 | 250 | 79 | 330 | 1.90e-99 | 297 |
MsG0580027495.01.T01 | MTR_5g060630 | 54.044 | 272 | 85 | 9 | 1 | 233 | 79 | 349 | 5.67e-81 | 254 |
MsG0580027495.01.T01 | MTR_5g460740 | 54.044 | 272 | 85 | 9 | 1 | 233 | 79 | 349 | 5.67e-81 | 254 |
MsG0580027495.01.T01 | MTR_5g460910 | 60.714 | 252 | 26 | 5 | 1 | 251 | 42 | 221 | 8.09e-79 | 242 |
MsG0580027495.01.T01 | MTR_5g061220 | 51.481 | 270 | 85 | 10 | 1 | 233 | 86 | 346 | 6.51e-71 | 228 |
MsG0580027495.01.T01 | MTR_1g058210 | 47.876 | 259 | 119 | 7 | 1 | 248 | 79 | 332 | 5.24e-62 | 202 |
MsG0580027495.01.T01 | MTR_5g040740 | 46.586 | 249 | 103 | 10 | 1 | 233 | 79 | 313 | 1.21e-52 | 177 |
MsG0580027495.01.T01 | MTR_5g040880 | 44.262 | 244 | 114 | 8 | 1 | 233 | 78 | 310 | 8.62e-52 | 177 |
MsG0580027495.01.T01 | MTR_2g024430 | 45.306 | 245 | 110 | 9 | 1 | 233 | 88 | 320 | 4.33e-50 | 173 |
MsG0580027495.01.T01 | MTR_2g006270 | 44.061 | 261 | 124 | 11 | 1 | 250 | 82 | 331 | 3.13e-49 | 169 |
MsG0580027495.01.T01 | MTR_2g006380 | 41.803 | 244 | 116 | 9 | 1 | 233 | 89 | 317 | 1.52e-43 | 154 |
MsG0580027495.01.T01 | MTR_5g082140 | 40.800 | 250 | 118 | 10 | 1 | 233 | 79 | 315 | 9.25e-43 | 152 |
MsG0580027495.01.T01 | MTR_3g073420 | 36.194 | 268 | 113 | 10 | 1 | 219 | 84 | 342 | 4.35e-33 | 127 |
MsG0580027495.01.T01 | MTR_5g062960 | 55.238 | 105 | 44 | 3 | 147 | 250 | 1 | 103 | 1.23e-28 | 108 |
MsG0580027495.01.T01 | MTR_1g064430 | 31.579 | 266 | 113 | 10 | 1 | 204 | 91 | 349 | 1.19e-24 | 103 |
MsG0580027495.01.T01 | MTR_1g064430 | 31.579 | 266 | 113 | 10 | 1 | 204 | 104 | 362 | 1.52e-24 | 103 |
MsG0580027495.01.T01 | MTR_5g062970 | 44.361 | 133 | 62 | 4 | 1 | 121 | 102 | 234 | 6.78e-23 | 94.7 |
MsG0580027495.01.T01 | MTR_4g058930 | 30.705 | 241 | 108 | 8 | 34 | 219 | 108 | 344 | 6.87e-23 | 98.6 |
MsG0580027495.01.T01 | MTR_4g058930 | 30.705 | 241 | 108 | 8 | 34 | 219 | 108 | 344 | 7.07e-23 | 98.6 |
MsG0580027495.01.T01 | MTR_2g094570 | 28.571 | 273 | 131 | 9 | 1 | 219 | 75 | 337 | 1.31e-22 | 97.8 |
MsG0580027495.01.T01 | MTR_2g094570 | 28.571 | 273 | 131 | 9 | 1 | 219 | 75 | 337 | 1.34e-22 | 97.8 |
MsG0580027495.01.T01 | MTR_2g094570 | 28.571 | 273 | 131 | 9 | 1 | 219 | 131 | 393 | 1.60e-22 | 97.8 |
MsG0580027495.01.T01 | MTR_1g094960 | 31.897 | 232 | 108 | 8 | 34 | 219 | 117 | 344 | 9.50e-22 | 95.5 |
MsG0580027495.01.T01 | MTR_7g101275 | 30.876 | 217 | 126 | 8 | 34 | 233 | 91 | 300 | 9.54e-22 | 94.4 |
MsG0580027495.01.T01 | MTR_7g101280 | 26.275 | 255 | 121 | 8 | 34 | 229 | 130 | 376 | 5.21e-17 | 81.3 |
MsG0580027495.01.T01 | MTR_0041s0110 | 26.275 | 255 | 121 | 8 | 34 | 229 | 130 | 376 | 5.21e-17 | 81.3 |
MsG0580027495.01.T01 | MTR_0041s0120 | 28.085 | 235 | 121 | 9 | 34 | 233 | 91 | 312 | 2.28e-16 | 79.0 |
MsG0580027495.01.T01 | MTR_2g018690 | 29.457 | 258 | 135 | 12 | 1 | 230 | 93 | 331 | 7.40e-16 | 78.2 |
MsG0580027495.01.T01 | MTR_2g014770 | 25.946 | 185 | 124 | 5 | 35 | 207 | 158 | 341 | 1.54e-15 | 77.0 |
MsG0580027495.01.T01 | MTR_2g014770 | 25.946 | 185 | 124 | 5 | 35 | 207 | 158 | 341 | 1.55e-15 | 77.0 |
MsG0580027495.01.T01 | MTR_4g088210 | 25.946 | 185 | 124 | 5 | 35 | 207 | 148 | 331 | 2.05e-15 | 76.6 |
MsG0580027495.01.T01 | MTR_8g079492 | 29.224 | 219 | 118 | 9 | 35 | 230 | 44 | 248 | 2.12e-15 | 76.6 |
MsG0580027495.01.T01 | MTR_4g088210 | 25.946 | 185 | 124 | 5 | 35 | 207 | 148 | 331 | 2.42e-15 | 76.6 |
MsG0580027495.01.T01 | MTR_2g093740 | 31.188 | 202 | 112 | 9 | 25 | 203 | 20 | 217 | 6.46e-15 | 75.1 |
MsG0580027495.01.T01 | MTR_2g093740 | 31.188 | 202 | 112 | 9 | 25 | 203 | 150 | 347 | 7.38e-15 | 75.1 |
MsG0580027495.01.T01 | MTR_2g093740 | 31.188 | 202 | 112 | 9 | 25 | 203 | 20 | 217 | 7.52e-15 | 75.1 |
MsG0580027495.01.T01 | MTR_2g093740 | 31.188 | 202 | 112 | 9 | 25 | 203 | 150 | 347 | 7.65e-15 | 75.1 |
MsG0580027495.01.T01 | MTR_4g060460 | 27.273 | 286 | 162 | 13 | 35 | 280 | 166 | 445 | 8.61e-15 | 74.7 |
MsG0580027495.01.T01 | MTR_2g093740 | 31.188 | 202 | 112 | 9 | 25 | 203 | 150 | 347 | 9.36e-15 | 74.7 |
MsG0580027495.01.T01 | MTR_4g124900 | 28.333 | 180 | 118 | 4 | 35 | 203 | 126 | 305 | 1.28e-14 | 74.3 |
MsG0580027495.01.T01 | MTR_2g043250 | 28.333 | 180 | 118 | 4 | 35 | 203 | 126 | 305 | 1.34e-14 | 74.3 |
MsG0580027495.01.T01 | MTR_4g124900 | 28.333 | 180 | 118 | 4 | 35 | 203 | 126 | 305 | 1.40e-14 | 74.3 |
MsG0580027495.01.T01 | MTR_5g076270 | 27.755 | 245 | 133 | 10 | 1 | 219 | 94 | 320 | 1.76e-14 | 73.9 |
MsG0580027495.01.T01 | MTR_4g060460 | 31.579 | 190 | 109 | 9 | 35 | 208 | 166 | 350 | 2.06e-14 | 73.6 |
MsG0580027495.01.T01 | MTR_3g064050 | 27.826 | 230 | 126 | 9 | 1 | 204 | 96 | 311 | 2.44e-14 | 73.6 |
MsG0580027495.01.T01 | MTR_2g005240 | 26.721 | 247 | 145 | 9 | 1 | 226 | 92 | 323 | 7.24e-14 | 72.0 |
MsG0580027495.01.T01 | MTR_8g100050 | 26.596 | 188 | 121 | 5 | 34 | 207 | 161 | 345 | 3.83e-13 | 69.7 |
MsG0580027495.01.T01 | MTR_8g100050 | 26.596 | 188 | 121 | 5 | 34 | 207 | 161 | 345 | 4.51e-13 | 69.7 |
MsG0580027495.01.T01 | MTR_8g079492 | 27.953 | 254 | 144 | 11 | 1 | 230 | 92 | 330 | 6.38e-13 | 69.3 |
MsG0580027495.01.T01 | MTR_8g079492 | 27.953 | 254 | 144 | 11 | 1 | 230 | 92 | 330 | 6.44e-13 | 69.3 |
MsG0580027495.01.T01 | MTR_7g062540 | 26.180 | 233 | 144 | 9 | 1 | 216 | 83 | 304 | 2.02e-12 | 67.8 |
MsG0580027495.01.T01 | MTR_4g021580 | 26.446 | 242 | 155 | 9 | 1 | 229 | 88 | 319 | 2.45e-12 | 67.4 |
MsG0580027495.01.T01 | MTR_4g021580 | 26.446 | 242 | 155 | 9 | 1 | 229 | 88 | 319 | 2.47e-12 | 67.4 |
MsG0580027495.01.T01 | MTR_2g093740 | 28.837 | 215 | 113 | 9 | 25 | 203 | 20 | 230 | 5.29e-12 | 66.2 |
MsG0580027495.01.T01 | MTR_2g093740 | 28.837 | 215 | 113 | 9 | 25 | 203 | 150 | 360 | 6.29e-12 | 66.2 |
MsG0580027495.01.T01 | MTR_2g093740 | 28.837 | 215 | 113 | 9 | 25 | 203 | 150 | 360 | 6.44e-12 | 66.2 |
MsG0580027495.01.T01 | MTR_2g093740 | 28.837 | 215 | 113 | 9 | 25 | 203 | 20 | 230 | 7.29e-12 | 65.9 |
MsG0580027495.01.T01 | MTR_2g093740 | 28.182 | 220 | 118 | 9 | 25 | 208 | 150 | 365 | 8.60e-12 | 65.9 |
MsG0580027495.01.T01 | MTR_8g446900 | 27.119 | 177 | 114 | 5 | 34 | 196 | 61 | 236 | 2.16e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580027495.01.T01 | AT1G77850 | 31.955 | 266 | 132 | 9 | 1 | 221 | 81 | 342 | 1.17e-28 | 115 |
MsG0580027495.01.T01 | AT1G77850 | 31.955 | 266 | 132 | 9 | 1 | 221 | 81 | 342 | 1.46e-28 | 115 |
MsG0580027495.01.T01 | AT4G30080 | 31.179 | 263 | 123 | 11 | 24 | 235 | 109 | 364 | 3.93e-23 | 99.4 |
MsG0580027495.01.T01 | AT2G28350 | 27.888 | 251 | 125 | 8 | 21 | 219 | 97 | 343 | 1.23e-20 | 92.0 |
MsG0580027495.01.T01 | AT2G28350 | 27.888 | 251 | 125 | 8 | 21 | 219 | 97 | 343 | 1.27e-20 | 92.0 |
MsG0580027495.01.T01 | AT2G33860 | 29.474 | 190 | 113 | 7 | 35 | 208 | 2 | 186 | 3.02e-17 | 81.6 |
MsG0580027495.01.T01 | AT2G33860 | 29.474 | 190 | 113 | 7 | 35 | 208 | 159 | 343 | 4.04e-17 | 81.6 |
MsG0580027495.01.T01 | AT1G30330 | 30.396 | 227 | 124 | 9 | 1 | 204 | 95 | 310 | 1.95e-16 | 79.7 |
MsG0580027495.01.T01 | AT1G30330 | 30.396 | 227 | 124 | 9 | 1 | 204 | 95 | 310 | 1.95e-16 | 79.7 |
MsG0580027495.01.T01 | AT5G37020 | 27.559 | 254 | 145 | 11 | 1 | 230 | 92 | 330 | 1.70e-15 | 77.0 |
MsG0580027495.01.T01 | AT5G37020 | 27.559 | 254 | 145 | 11 | 1 | 230 | 92 | 330 | 1.72e-15 | 77.0 |
MsG0580027495.01.T01 | AT5G37020 | 28.311 | 219 | 120 | 9 | 35 | 230 | 31 | 235 | 1.82e-15 | 77.0 |
MsG0580027495.01.T01 | AT1G59750 | 27.049 | 244 | 154 | 9 | 1 | 230 | 91 | 324 | 2.24e-15 | 76.6 |
MsG0580027495.01.T01 | AT1G59750 | 27.049 | 244 | 154 | 9 | 1 | 230 | 91 | 324 | 2.33e-15 | 76.6 |
MsG0580027495.01.T01 | AT1G59750 | 27.049 | 244 | 154 | 9 | 1 | 230 | 91 | 324 | 2.76e-15 | 76.3 |
MsG0580027495.01.T01 | AT1G59750 | 27.049 | 244 | 154 | 9 | 1 | 230 | 91 | 324 | 2.76e-15 | 76.3 |
MsG0580027495.01.T01 | AT2G46530 | 28.636 | 220 | 131 | 8 | 1 | 203 | 112 | 322 | 3.99e-15 | 75.9 |
MsG0580027495.01.T01 | AT2G46530 | 28.636 | 220 | 131 | 8 | 1 | 203 | 91 | 301 | 4.52e-15 | 75.5 |
MsG0580027495.01.T01 | AT1G34390 | 26.437 | 261 | 165 | 8 | 2 | 248 | 97 | 344 | 6.78e-15 | 75.1 |
MsG0580027495.01.T01 | AT1G30330 | 30.396 | 227 | 124 | 9 | 1 | 204 | 93 | 308 | 1.30e-14 | 74.3 |
MsG0580027495.01.T01 | AT5G62000 | 25.328 | 229 | 138 | 7 | 1 | 207 | 130 | 347 | 2.36e-14 | 73.6 |
MsG0580027495.01.T01 | AT5G62000 | 25.328 | 229 | 138 | 7 | 1 | 207 | 130 | 347 | 2.36e-14 | 73.6 |
MsG0580027495.01.T01 | AT5G62000 | 25.328 | 229 | 138 | 7 | 1 | 207 | 130 | 347 | 2.36e-14 | 73.6 |
MsG0580027495.01.T01 | AT5G62000 | 25.328 | 229 | 138 | 7 | 1 | 207 | 130 | 347 | 2.36e-14 | 73.6 |
MsG0580027495.01.T01 | AT5G62000 | 25.328 | 229 | 138 | 7 | 1 | 207 | 130 | 347 | 2.36e-14 | 73.6 |
MsG0580027495.01.T01 | AT1G34310 | 27.419 | 248 | 146 | 10 | 2 | 233 | 97 | 326 | 4.56e-14 | 72.8 |
MsG0580027495.01.T01 | AT3G61830 | 27.273 | 220 | 134 | 8 | 1 | 203 | 95 | 305 | 4.68e-14 | 72.4 |
MsG0580027495.01.T01 | AT3G61830 | 27.273 | 220 | 134 | 8 | 1 | 203 | 44 | 254 | 4.91e-14 | 72.4 |
MsG0580027495.01.T01 | AT1G35520 | 26.639 | 244 | 145 | 10 | 2 | 229 | 97 | 322 | 7.59e-14 | 72.0 |
MsG0580027495.01.T01 | AT2G46530 | 28.500 | 200 | 120 | 7 | 18 | 203 | 24 | 214 | 1.04e-13 | 71.2 |
MsG0580027495.01.T01 | AT1G34410 | 25.940 | 266 | 164 | 10 | 1 | 248 | 96 | 346 | 1.25e-13 | 71.2 |
MsG0580027495.01.T01 | AT5G20730 | 29.508 | 183 | 117 | 5 | 32 | 202 | 124 | 306 | 2.29e-13 | 70.9 |
MsG0580027495.01.T01 | AT5G20730 | 29.508 | 183 | 117 | 5 | 32 | 202 | 124 | 306 | 2.55e-13 | 70.5 |
MsG0580027495.01.T01 | AT5G20730 | 30.055 | 183 | 115 | 6 | 32 | 202 | 124 | 305 | 3.74e-13 | 70.1 |
MsG0580027495.01.T01 | AT4G23980 | 24.521 | 261 | 178 | 7 | 1 | 248 | 82 | 336 | 1.30e-12 | 68.2 |
MsG0580027495.01.T01 | AT4G23980 | 24.521 | 261 | 178 | 7 | 1 | 248 | 82 | 336 | 1.32e-12 | 68.2 |
MsG0580027495.01.T01 | AT1G35240 | 26.038 | 265 | 163 | 10 | 2 | 248 | 97 | 346 | 1.35e-12 | 68.2 |
MsG0580027495.01.T01 | AT5G60450 | 28.293 | 205 | 123 | 8 | 24 | 208 | 160 | 360 | 2.44e-12 | 67.4 |
MsG0580027495.01.T01 | AT5G60450 | 28.293 | 205 | 123 | 8 | 24 | 208 | 136 | 336 | 2.46e-12 | 67.4 |
MsG0580027495.01.T01 | AT1G35540 | 25.806 | 248 | 150 | 10 | 2 | 233 | 97 | 326 | 2.49e-12 | 67.4 |
MsG0580027495.01.T01 | AT1G19220 | 36.634 | 101 | 54 | 3 | 35 | 125 | 126 | 226 | 8.80e-12 | 65.9 |
MsG0580027495.01.T01 | AT1G19850 | 31.111 | 135 | 83 | 3 | 1 | 125 | 113 | 247 | 1.07e-11 | 65.9 |
MsG0580027495.01.T01 | AT1G19850 | 31.111 | 135 | 83 | 3 | 1 | 125 | 124 | 258 | 1.10e-11 | 65.5 |
Find 65 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATGAAAACAACAGAATCTT+TGG | 0.216238 | 5:-62050874 | None:intergenic |
ATGAAGATTGGTTGGGAATC+TGG | 0.244310 | 5:+62051110 | MsG0580027495.01.T01:CDS |
CCTCCTCCTCCTGTTGTTCC+TGG | 0.246154 | 5:+62050609 | MsG0580027495.01.T01:CDS |
ATTCTTCCAATGTCCCTAAT+TGG | 0.255553 | 5:+62051225 | MsG0580027495.01.T01:CDS |
TGTTTCCATCGTCGTCTTCT+TGG | 0.258015 | 5:-62050632 | None:intergenic |
ACCTCAAGAATGTGCCAATT+AGG | 0.262799 | 5:-62051239 | None:intergenic |
CTTTCACCTGTTTCAGCTGC+AGG | 0.305850 | 5:-62050948 | None:intergenic |
GGCAACAAGTCAGCCGATTT+AGG | 0.332336 | 5:-62052255 | None:intergenic |
AGATATTAGTTGGAATTTGC+AGG | 0.349043 | 5:+62050913 | MsG0580027495.01.T01:CDS |
GACTTCCCTGCAGCTGAAAC+AGG | 0.367664 | 5:+62050942 | MsG0580027495.01.T01:CDS |
CCTCAAGAATGTGCCAATTA+GGG | 0.384917 | 5:-62051238 | None:intergenic |
CAGCTGGCATGCAGGGAGCC+AGG | 0.385904 | 5:+62052106 | MsG0580027495.01.T01:intron |
AGATTCCCAACCAATCTTCA+TGG | 0.388833 | 5:-62051108 | None:intergenic |
AAGAATCTGATACAGATAAA+TGG | 0.391533 | 5:-62052134 | None:intergenic |
GATTTCACCAAGTCAAGCTT+TGG | 0.394718 | 5:-62050738 | None:intergenic |
GGAACAACAGGAGGAGGAGG+AGG | 0.408299 | 5:-62050606 | None:intergenic |
GGAGGATATTGGGCAGTTAC+CGG | 0.415046 | 5:-62050585 | None:intergenic |
CCATCGTCGTCTTCTTGGCC+AGG | 0.419252 | 5:-62050627 | None:intergenic |
CGACCTTAAAAGCCAAGAAT+GGG | 0.432454 | 5:+62050779 | MsG0580027495.01.T01:CDS |
ATACATTGGCAGTCCTAAAT+CGG | 0.439684 | 5:+62052242 | MsG0580027495.01.T01:CDS |
TCTGCTGGAAAGATATTAGT+TGG | 0.452740 | 5:+62050903 | MsG0580027495.01.T01:CDS |
TCTTCTTGGCCAGGAACAAC+AGG | 0.455566 | 5:-62050618 | None:intergenic |
GTAGATGATTCCATGAAGAT+TGG | 0.467615 | 5:+62051098 | MsG0580027495.01.T01:CDS |
TCACACCATTTCCTAGCTGT+TGG | 0.474083 | 5:-62051053 | None:intergenic |
TACCGGAGTGAGGAGCAGTT+TGG | 0.479172 | 5:-62050568 | None:intergenic |
ATTATCCAACAGCTAGGAAA+TGG | 0.485842 | 5:+62051048 | MsG0580027495.01.T01:CDS |
ATGATTCCATGAAGATTGGT+TGG | 0.491255 | 5:+62051102 | MsG0580027495.01.T01:CDS |
TGATTCCATGAAGATTGGTT+GGG | 0.496383 | 5:+62051103 | MsG0580027495.01.T01:CDS |
GACAAGGGTGATGGTTTCAT+CGG | 0.500866 | 5:+62052171 | MsG0580027495.01.T01:CDS |
CCGACCTTAAAAGCCAAGAA+TGG | 0.501034 | 5:+62050778 | MsG0580027495.01.T01:CDS |
GATCTTTCCAAAGCTTGACT+TGG | 0.502331 | 5:+62050731 | MsG0580027495.01.T01:CDS |
CCAGGAACAACAGGAGGAGG+AGG | 0.515849 | 5:-62050609 | None:intergenic |
ACTTGTTGCTTGGTTCATTG+AGG | 0.515871 | 5:-62052276 | None:intergenic |
CTGAAACAGGTGAAAGAGGC+AGG | 0.517841 | 5:+62050955 | MsG0580027495.01.T01:CDS |
TTTGAATGCAGTGGAATTGG+CGG | 0.522289 | 5:+62050998 | MsG0580027495.01.T01:CDS |
TTTCACCTGTTTCAGCTGCA+GGG | 0.529812 | 5:-62050947 | None:intergenic |
AAAGGCATATTATCAGCCTA+AGG | 0.530867 | 5:+62051178 | MsG0580027495.01.T01:CDS |
ACAAGGGTGATGGTTTCATC+GGG | 0.532238 | 5:+62052172 | MsG0580027495.01.T01:CDS |
CCCTAATTGGCACATTCTTG+AGG | 0.538147 | 5:+62051238 | MsG0580027495.01.T01:CDS |
CGCCAAACTGCTCCTCACTC+CGG | 0.538251 | 5:+62050566 | MsG0580027495.01.T01:CDS |
TACAGATAAATGGTCATGCC+TGG | 0.539273 | 5:-62052124 | None:intergenic |
ATCGGGAACAGTACAATGGA+AGG | 0.547072 | 5:+62052189 | MsG0580027495.01.T01:CDS |
AAGGCATATTATCAGCCTAA+GGG | 0.550266 | 5:+62051179 | MsG0580027495.01.T01:CDS |
GCAGCTGAAACAGGTGAAAG+AGG | 0.552603 | 5:+62050951 | MsG0580027495.01.T01:CDS |
ACAGTAGAGATTGTCCCCTT+AGG | 0.555913 | 5:-62051194 | None:intergenic |
AGACGAGTCTTCAAATTCAA+AGG | 0.557318 | 5:+62051160 | MsG0580027495.01.T01:CDS |
AATGTGCCAATTAGGGACAT+TGG | 0.568650 | 5:-62051231 | None:intergenic |
TGGCCAGGAACAACAGGAGG+AGG | 0.574874 | 5:-62050612 | None:intergenic |
GGAATTGGCGGACAAGAACA+TGG | 0.578093 | 5:+62051010 | MsG0580027495.01.T01:CDS |
TTGTGTATTATCCAACAGCT+AGG | 0.584708 | 5:+62051042 | MsG0580027495.01.T01:CDS |
TCAGTAGACTACGTACTGGC+TGG | 0.603214 | 5:+62050820 | MsG0580027495.01.T01:CDS |
CAGGAATTTAACTGAGAGTG+CGG | 0.604399 | 5:+62050974 | MsG0580027495.01.T01:CDS |
ATCAAGTCAGCGCATTCATG+AGG | 0.615421 | 5:-62050711 | None:intergenic |
AAACTCAGTAGACTACGTAC+TGG | 0.617424 | 5:+62050816 | MsG0580027495.01.T01:CDS |
TCTGACACAGAGCTATACAT+TGG | 0.617625 | 5:+62052228 | MsG0580027495.01.T01:CDS |
AGTACAATGGAAGGGTTGAG+TGG | 0.621430 | 5:+62052198 | MsG0580027495.01.T01:CDS |
ACCTTAAAAGCCAAGAATGG+GGG | 0.634733 | 5:+62050781 | MsG0580027495.01.T01:CDS |
GACCTTAAAAGCCAAGAATG+GGG | 0.635286 | 5:+62050780 | MsG0580027495.01.T01:CDS |
AGGCATATTATCAGCCTAAG+GGG | 0.646519 | 5:+62051180 | MsG0580027495.01.T01:CDS |
ATTGGGCAGTTACCGGAGTG+AGG | 0.647004 | 5:-62050578 | None:intergenic |
TTTCATCGGGAACAGTACAA+TGG | 0.656817 | 5:+62052185 | MsG0580027495.01.T01:CDS |
TCTTGGCCAGGAACAACAGG+AGG | 0.662003 | 5:-62050615 | None:intergenic |
TCGGGAACAGTACAATGGAA+GGG | 0.662848 | 5:+62052190 | MsG0580027495.01.T01:CDS |
CCTGGCCAAGAAGACGACGA+TGG | 0.698976 | 5:+62050627 | MsG0580027495.01.T01:CDS |
TAGTCTACTGAGTTTCACGT+AGG | 0.730433 | 5:-62050808 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGAAAAGTTTCTTATCAAT+TGG | - | Chr5:62051670-62051689 | None:intergenic | 20.0% |
!! | TCAAACAAATCATGAAATTA+TGG | - | Chr5:62051328-62051347 | None:intergenic | 20.0% |
!!! | CAATGTTTTAGAATTACATT+TGG | - | Chr5:62051488-62051507 | None:intergenic | 20.0% |
!!! | TTTGTATTTTGCAAGATTTT+AGG | - | Chr5:62051844-62051863 | None:intergenic | 20.0% |
! | AAGAATCTGATACAGATAAA+TGG | - | Chr5:62052137-62052156 | None:intergenic | 25.0% |
! | AATTAACCTATGATAAAGAG+GGG | - | Chr5:62051813-62051832 | None:intergenic | 25.0% |
! | AGAAGAATATGGAATTTGTA+GGG | - | Chr5:62051965-62051984 | None:intergenic | 25.0% |
! | CAATTAACCTATGATAAAGA+GGG | - | Chr5:62051814-62051833 | None:intergenic | 25.0% |
! | CTCTTTATCATAGGTTAATT+GGG | + | Chr5:62051813-62051832 | MsG0580027495.01.T01:intron | 25.0% |
!!! | AACAATCGATTCTAAAATGT+TGG | - | Chr5:62051539-62051558 | None:intergenic | 25.0% |
!!! | TCAAAAGTTTTGAATGACAA+GGG | + | Chr5:62052156-62052175 | MsG0580027495.01.T01:CDS | 25.0% |
!!! | TTCAAAAGTTTTGAATGACA+AGG | + | Chr5:62052155-62052174 | MsG0580027495.01.T01:CDS | 25.0% |
AAGAATATGGAATTTGTAGG+GGG | - | Chr5:62051963-62051982 | None:intergenic | 30.0% | |
AGATATTAGTTGGAATTTGC+AGG | + | Chr5:62050913-62050932 | MsG0580027495.01.T01:CDS | 30.0% | |
ATACAAACATAGTCAATCCT+TGG | + | Chr5:62051857-62051876 | MsG0580027495.01.T01:intron | 30.0% | |
CATGAAAACAACAGAATCTT+TGG | - | Chr5:62050877-62050896 | None:intergenic | 30.0% | |
CCAATTAACCTATGATAAAG+AGG | - | Chr5:62051815-62051834 | None:intergenic | 30.0% | |
CCTCTTTATCATAGGTTAAT+TGG | + | Chr5:62051812-62051831 | MsG0580027495.01.T01:intron | 30.0% | |
GAAGAATATGGAATTTGTAG+GGG | - | Chr5:62051964-62051983 | None:intergenic | 30.0% | |
GAGAAGAATATGGAATTTGT+AGG | - | Chr5:62051966-62051985 | None:intergenic | 30.0% | |
GAGTTACCTAATTCAACAAT+GGG | + | Chr5:62052045-62052064 | MsG0580027495.01.T01:intron | 30.0% | |
GTAATTGATGGAGAAGAATA+TGG | - | Chr5:62051976-62051995 | None:intergenic | 30.0% | |
TACAATGAGAAATGCTTAGA+AGG | - | Chr5:62051603-62051622 | None:intergenic | 30.0% | |
TTATCATAGGTTAATTGGGA+TGG | + | Chr5:62051817-62051836 | MsG0580027495.01.T01:intron | 30.0% | |
! | ACATTTGGAACTTATCCTAT+AGG | - | Chr5:62051473-62051492 | None:intergenic | 30.0% |
! | GTTTGATAATTGTGTTGAAG+TGG | + | Chr5:62051342-62051361 | MsG0580027495.01.T01:intron | 30.0% |
!! | GATTCTGATAATTTTTCAGC+TGG | + | Chr5:62052090-62052109 | MsG0580027495.01.T01:intron | 30.0% |
!!! | GTCTAGGACTTTTTTTTGAA+GGG | - | Chr5:62051924-62051943 | None:intergenic | 30.0% |
!!! | TGTCTAGGACTTTTTTTTGA+AGG | - | Chr5:62051925-62051944 | None:intergenic | 30.0% |
AAACACTCCTATTGCTAAGT+AGG | + | Chr5:62051622-62051641 | MsG0580027495.01.T01:intron | 35.0% | |
AAGGATCCCATTGTTGAATT+AGG | - | Chr5:62052054-62052073 | None:intergenic | 35.0% | |
AAGGCATATTATCAGCCTAA+GGG | + | Chr5:62051179-62051198 | MsG0580027495.01.T01:CDS | 35.0% | |
ACTCCTACATAGCAATGAAA+AGG | - | Chr5:62052029-62052048 | None:intergenic | 35.0% | |
ACTTCGTAGATTCTTCTGTT+TGG | + | Chr5:62051427-62051446 | MsG0580027495.01.T01:intron | 35.0% | |
AGAATATGGAATTTGTAGGG+GGG | - | Chr5:62051962-62051981 | None:intergenic | 35.0% | |
AGACGAGTCTTCAAATTCAA+AGG | + | Chr5:62051160-62051179 | MsG0580027495.01.T01:CDS | 35.0% | |
ATACATTGGCAGTCCTAAAT+CGG | + | Chr5:62052242-62052261 | MsG0580027495.01.T01:CDS | 35.0% | |
ATGATTCCATGAAGATTGGT+TGG | + | Chr5:62051102-62051121 | MsG0580027495.01.T01:CDS | 35.0% | |
ATTATCCAACAGCTAGGAAA+TGG | + | Chr5:62051048-62051067 | MsG0580027495.01.T01:CDS | 35.0% | |
ATTCTTCCAATGTCCCTAAT+TGG | + | Chr5:62051225-62051244 | MsG0580027495.01.T01:CDS | 35.0% | |
ATTCTTCCCCTCTTTATCAT+AGG | + | Chr5:62051804-62051823 | MsG0580027495.01.T01:intron | 35.0% | |
CTCCTACATAGCAATGAAAA+GGG | - | Chr5:62052028-62052047 | None:intergenic | 35.0% | |
GGAGTTACCTAATTCAACAA+TGG | + | Chr5:62052044-62052063 | MsG0580027495.01.T01:intron | 35.0% | |
GTAGATGATTCCATGAAGAT+TGG | + | Chr5:62051098-62051117 | MsG0580027495.01.T01:CDS | 35.0% | |
TATGATAAAGAGGGGAAGAA+TGG | - | Chr5:62051805-62051824 | None:intergenic | 35.0% | |
TCAAGATCCTACTTAGCAAT+AGG | - | Chr5:62051632-62051651 | None:intergenic | 35.0% | |
TCTGCTGGAAAGATATTAGT+TGG | + | Chr5:62050903-62050922 | MsG0580027495.01.T01:CDS | 35.0% | |
TTGTGTATTATCCAACAGCT+AGG | + | Chr5:62051042-62051061 | MsG0580027495.01.T01:CDS | 35.0% | |
! | AAAGGCATATTATCAGCCTA+AGG | + | Chr5:62051178-62051197 | MsG0580027495.01.T01:CDS | 35.0% |
! | GAAATGGTGTGATTTTGTGA+TGG | + | Chr5:62051064-62051083 | MsG0580027495.01.T01:CDS | 35.0% |
! | GTTTTCATGAAAAACTCTGC+TGG | + | Chr5:62050888-62050907 | MsG0580027495.01.T01:CDS | 35.0% |
! | TGATTCCATGAAGATTGGTT+GGG | + | Chr5:62051103-62051122 | MsG0580027495.01.T01:CDS | 35.0% |
! | TTCCCTTTTCATTGCTATGT+AGG | + | Chr5:62052023-62052042 | MsG0580027495.01.T01:intron | 35.0% |
!! | CGATTCTAAAATGTTGGAGA+TGG | - | Chr5:62051533-62051552 | None:intergenic | 35.0% |
!! | TGTTGTGAGAGTTTTGACAT+AGG | - | Chr5:62050664-62050683 | None:intergenic | 35.0% |
!!! | GGACTTTTTTTTGAAGGGAA+TGG | - | Chr5:62051919-62051938 | None:intergenic | 35.0% |
!!! | TGATTTTGTGATGGATGCTA+AGG | + | Chr5:62051073-62051092 | MsG0580027495.01.T01:CDS | 35.0% |
AAACATAGTCAATCCTTGGC+AGG | + | Chr5:62051861-62051880 | MsG0580027495.01.T01:intron | 40.0% | |
AAACTCAGTAGACTACGTAC+TGG | + | Chr5:62050816-62050835 | MsG0580027495.01.T01:CDS | 40.0% | |
AATGTGCCAATTAGGGACAT+TGG | - | Chr5:62051234-62051253 | None:intergenic | 40.0% | |
ACCTCAAGAATGTGCCAATT+AGG | - | Chr5:62051242-62051261 | None:intergenic | 40.0% | |
ACCTTAAAAGCCAAGAATGG+GGG | + | Chr5:62050781-62050800 | MsG0580027495.01.T01:CDS | 40.0% | |
AGATTCCCAACCAATCTTCA+TGG | - | Chr5:62051111-62051130 | None:intergenic | 40.0% | |
AGGCATATTATCAGCCTAAG+GGG | + | Chr5:62051180-62051199 | MsG0580027495.01.T01:CDS | 40.0% | |
ATAGCAATGAAAAGGGAAGC+TGG | - | Chr5:62052021-62052040 | None:intergenic | 40.0% | |
CAGGAATTTAACTGAGAGTG+CGG | + | Chr5:62050974-62050993 | MsG0580027495.01.T01:CDS | 40.0% | |
CCTCAAGAATGTGCCAATTA+GGG | - | Chr5:62051241-62051260 | None:intergenic | 40.0% | |
CGACCTTAAAAGCCAAGAAT+GGG | + | Chr5:62050779-62050798 | MsG0580027495.01.T01:CDS | 40.0% | |
GACCTTAAAAGCCAAGAATG+GGG | + | Chr5:62050780-62050799 | MsG0580027495.01.T01:CDS | 40.0% | |
GATCTTTCCAAAGCTTGACT+TGG | + | Chr5:62050731-62050750 | MsG0580027495.01.T01:CDS | 40.0% | |
GATTTCACCAAGTCAAGCTT+TGG | - | Chr5:62050741-62050760 | None:intergenic | 40.0% | |
TACAGATAAATGGTCATGCC+TGG | - | Chr5:62052127-62052146 | None:intergenic | 40.0% | |
TAGTCTACTGAGTTTCACGT+AGG | - | Chr5:62050811-62050830 | None:intergenic | 40.0% | |
TATCAGAATCCAACCACGTT+TGG | - | Chr5:62052080-62052099 | None:intergenic | 40.0% | |
TCTGACACAGAGCTATACAT+TGG | + | Chr5:62052228-62052247 | MsG0580027495.01.T01:CDS | 40.0% | |
TTTCATCGGGAACAGTACAA+TGG | + | Chr5:62052185-62052204 | MsG0580027495.01.T01:CDS | 40.0% | |
TTTGAATGCAGTGGAATTGG+CGG | + | Chr5:62050998-62051017 | MsG0580027495.01.T01:CDS | 40.0% | |
! | ATGAAGATTGGTTGGGAATC+TGG | + | Chr5:62051110-62051129 | MsG0580027495.01.T01:CDS | 40.0% |
! | GGTATTGAGGCAGTAATTGA+TGG | - | Chr5:62051988-62052007 | None:intergenic | 40.0% |
!! | AAGCTAGCTTTGTGTCCTAT+AGG | + | Chr5:62051455-62051474 | MsG0580027495.01.T01:intron | 40.0% |
!! | AATTTTTCAGCTGGCATGCA+GGG | + | Chr5:62052099-62052118 | MsG0580027495.01.T01:intron | 40.0% |
!! | GTTTTGAATGACAAGGGTGA+TGG | + | Chr5:62052162-62052181 | MsG0580027495.01.T01:CDS | 40.0% |
!! | TAATTTTTCAGCTGGCATGC+AGG | + | Chr5:62052098-62052117 | MsG0580027495.01.T01:intron | 40.0% |
!!! | CCATTCTTGGCTTTTAAGGT+CGG | - | Chr5:62050781-62050800 | None:intergenic | 40.0% |
!!! | GGTTTTGAATGCAGTGGAAT+TGG | + | Chr5:62050995-62051014 | MsG0580027495.01.T01:CDS | 40.0% |
ACAGTAGAGATTGTCCCCTT+AGG | - | Chr5:62051197-62051216 | None:intergenic | 45.0% | |
AGTACAATGGAAGGGTTGAG+TGG | + | Chr5:62052198-62052217 | MsG0580027495.01.T01:CDS | 45.0% | |
ATCAAGTCAGCGCATTCATG+AGG | - | Chr5:62050714-62050733 | None:intergenic | 45.0% | |
ATCCTTGAACCAAACGTGGT+TGG | + | Chr5:62052068-62052087 | MsG0580027495.01.T01:intron | 45.0% | |
ATCGGGAACAGTACAATGGA+AGG | + | Chr5:62052189-62052208 | MsG0580027495.01.T01:CDS | 45.0% | |
CCCTAATTGGCACATTCTTG+AGG | + | Chr5:62051238-62051257 | MsG0580027495.01.T01:CDS | 45.0% | |
CCGACCTTAAAAGCCAAGAA+TGG | + | Chr5:62050778-62050797 | MsG0580027495.01.T01:CDS | 45.0% | |
GAAGAACACTGAGCATGTCT+AGG | - | Chr5:62051940-62051959 | None:intergenic | 45.0% | |
GGGAATGGTAGATCTAGTGA+AGG | - | Chr5:62051904-62051923 | None:intergenic | 45.0% | |
GTTGGAGATGGAGACTCTAA+TGG | - | Chr5:62051521-62051540 | None:intergenic | 45.0% | |
TCACACCATTTCCTAGCTGT+TGG | - | Chr5:62051056-62051075 | None:intergenic | 45.0% | |
TCGGGAACAGTACAATGGAA+GGG | + | Chr5:62052190-62052209 | MsG0580027495.01.T01:CDS | 45.0% | |
TGTTTCCATCGTCGTCTTCT+TGG | - | Chr5:62050635-62050654 | None:intergenic | 45.0% | |
TTTCACCTGTTTCAGCTGCA+GGG | - | Chr5:62050950-62050969 | None:intergenic | 45.0% | |
! | ACAAGGGTGATGGTTTCATC+GGG | + | Chr5:62052172-62052191 | MsG0580027495.01.T01:CDS | 45.0% |
! | ATCCAACCACGTTTGGTTCA+AGG | - | Chr5:62052073-62052092 | None:intergenic | 45.0% |
! | GACAAGGGTGATGGTTTCAT+CGG | + | Chr5:62052171-62052190 | MsG0580027495.01.T01:CDS | 45.0% |
!! | ACCCCCATTCTTGGCTTTTA+AGG | - | Chr5:62050785-62050804 | None:intergenic | 45.0% |
AAAAGGGAAGCTGGTGGTAG+AGG | - | Chr5:62052012-62052031 | None:intergenic | 50.0% | |
AGGAGGAGGAGGAGGATATT+GGG | - | Chr5:62050598-62050617 | None:intergenic | 50.0% | |
CTGAAACAGGTGAAAGAGGC+AGG | + | Chr5:62050955-62050974 | MsG0580027495.01.T01:CDS | 50.0% | |
CTTTCACCTGTTTCAGCTGC+AGG | - | Chr5:62050951-62050970 | None:intergenic | 50.0% | |
GCAATGAAAAGGGAAGCTGG+TGG | - | Chr5:62052018-62052037 | None:intergenic | 50.0% | |
GCAGCTGAAACAGGTGAAAG+AGG | + | Chr5:62050951-62050970 | MsG0580027495.01.T01:CDS | 50.0% | |
GGAGGATATTGGGCAGTTAC+CGG | - | Chr5:62050588-62050607 | None:intergenic | 50.0% | |
TCTTCTTGGCCAGGAACAAC+AGG | - | Chr5:62050621-62050640 | None:intergenic | 50.0% | |
TGGGATCCTTGAACCAAACG+TGG | + | Chr5:62052064-62052083 | MsG0580027495.01.T01:intron | 50.0% | |
TTGCAAGCTTCAACCTGCCA+AGG | - | Chr5:62051877-62051896 | None:intergenic | 50.0% | |
! | GGAATTGGCGGACAAGAACA+TGG | + | Chr5:62051010-62051029 | MsG0580027495.01.T01:CDS | 50.0% |
! | GGCAACAAGTCAGCCGATTT+AGG | - | Chr5:62052258-62052277 | None:intergenic | 50.0% |
! | TCAGTAGACTACGTACTGGC+TGG | + | Chr5:62050820-62050839 | MsG0580027495.01.T01:CDS | 50.0% |
!!! | GAGTGCGGTTTTGAATGCAG+TGG | + | Chr5:62050989-62051008 | MsG0580027495.01.T01:CDS | 50.0% |
ATTGGGCAGTTACCGGAGTG+AGG | - | Chr5:62050581-62050600 | None:intergenic | 55.0% | |
GACTTCCCTGCAGCTGAAAC+AGG | + | Chr5:62050942-62050961 | MsG0580027495.01.T01:CDS | 55.0% | |
GAGGAGGAGGAGGAGGATAT+TGG | - | Chr5:62050599-62050618 | None:intergenic | 55.0% | |
TACCGGAGTGAGGAGCAGTT+TGG | - | Chr5:62050571-62050590 | None:intergenic | 55.0% | |
TCTTGGCCAGGAACAACAGG+AGG | - | Chr5:62050618-62050637 | None:intergenic | 55.0% | |
TGGTGGTAGAGGCGGTATTG+AGG | - | Chr5:62052001-62052020 | None:intergenic | 55.0% | |
ACAACAGGAGGAGGAGGAGG+AGG | - | Chr5:62050606-62050625 | None:intergenic | 60.0% | |
AGGGAAGCTGGTGGTAGAGG+CGG | - | Chr5:62052009-62052028 | None:intergenic | 60.0% | |
CCAGGAACAACAGGAGGAGG+AGG | - | Chr5:62050612-62050631 | None:intergenic | 60.0% | |
CCATCGTCGTCTTCTTGGCC+AGG | - | Chr5:62050630-62050649 | None:intergenic | 60.0% | |
CCTCCTCCTCCTGTTGTTCC+TGG | + | Chr5:62050609-62050628 | MsG0580027495.01.T01:CDS | 60.0% | |
CCTGGCCAAGAAGACGACGA+TGG | + | Chr5:62050627-62050646 | MsG0580027495.01.T01:CDS | 60.0% | |
CGCCAAACTGCTCCTCACTC+CGG | + | Chr5:62050566-62050585 | MsG0580027495.01.T01:CDS | 60.0% | |
CGTAGGTGCACCCCCATTCT+TGG | - | Chr5:62050794-62050813 | None:intergenic | 60.0% | |
GGAACAACAGGAGGAGGAGG+AGG | - | Chr5:62050609-62050628 | None:intergenic | 60.0% | |
TGGCCAGGAACAACAGGAGG+AGG | - | Chr5:62050615-62050634 | None:intergenic | 60.0% | |
CAGCTGGCATGCAGGGAGCC+AGG | + | Chr5:62052106-62052125 | MsG0580027495.01.T01:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 62050561 | 62052284 | 62050561 | ID=MsG0580027495.01;Name=MsG0580027495.01 |
Chr5 | mRNA | 62050561 | 62052284 | 62050561 | ID=MsG0580027495.01.T01;Parent=MsG0580027495.01;Name=MsG0580027495.01.T01;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|0|0.5|2|0|287 |
Chr5 | exon | 62050561 | 62051259 | 62050561 | ID=MsG0580027495.01.T01:exon:22464;Parent=MsG0580027495.01.T01 |
Chr5 | exon | 62052120 | 62052284 | 62052120 | ID=MsG0580027495.01.T01:exon:22465;Parent=MsG0580027495.01.T01 |
Chr5 | CDS | 62050561 | 62051259 | 62050561 | ID=MsG0580027495.01.T01:cds;Parent=MsG0580027495.01.T01 |
Chr5 | CDS | 62052120 | 62052284 | 62052120 | ID=MsG0580027495.01.T01:cds;Parent=MsG0580027495.01.T01 |
Gene Sequence |
Protein sequence |