Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027503.01.T01 | XP_003614897.2 | 88.491 | 391 | 12 | 1 | 16 | 406 | 1 | 358 | 0 | 705 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027503.01.T01 | Q93ZE2 | 48.78 | 410 | 147 | 7 | 1 | 394 | 1 | 363 | 6.17E-115 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027503.01.T01 | G7K933 | 88.491 | 391 | 12 | 1 | 16 | 406 | 1 | 358 | 0.0 | 705 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580027503.01.T01 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027503.01.T01 | MTR_5g060950 | 88.491 | 391 | 12 | 1 | 16 | 406 | 1 | 358 | 0.0 | 705 |
| MsG0580027503.01.T01 | MTR_3g073560 | 59.843 | 381 | 114 | 4 | 16 | 394 | 1 | 344 | 3.95e-148 | 433 |
| MsG0580027503.01.T01 | MTR_3g087940 | 45.455 | 396 | 172 | 4 | 4 | 394 | 2 | 358 | 3.87e-110 | 328 |
| MsG0580027503.01.T01 | MTR_8g091650 | 43.307 | 381 | 176 | 5 | 14 | 394 | 13 | 353 | 2.76e-92 | 282 |
| MsG0580027503.01.T01 | MTR_8g091650 | 40.097 | 414 | 178 | 5 | 14 | 394 | 13 | 389 | 1.61e-87 | 271 |
| MsG0580027503.01.T01 | MTR_8g091650 | 47.097 | 310 | 130 | 2 | 85 | 394 | 5 | 280 | 5.77e-86 | 263 |
| MsG0580027503.01.T01 | MTR_8g040120 | 46.250 | 320 | 128 | 3 | 82 | 394 | 181 | 463 | 1.86e-82 | 260 |
| MsG0580027503.01.T01 | MTR_7g092750 | 42.388 | 335 | 149 | 4 | 69 | 394 | 60 | 359 | 5.28e-82 | 256 |
| MsG0580027503.01.T01 | MTR_7g089800 | 45.625 | 320 | 130 | 4 | 82 | 394 | 138 | 420 | 6.05e-82 | 258 |
| MsG0580027503.01.T01 | MTR_2g086420 | 46.006 | 313 | 129 | 3 | 82 | 394 | 193 | 465 | 7.65e-82 | 259 |
| MsG0580027503.01.T01 | MTR_2g086420 | 46.006 | 313 | 129 | 3 | 82 | 394 | 194 | 466 | 7.85e-82 | 259 |
| MsG0580027503.01.T01 | MTR_7g089800 | 45.625 | 320 | 130 | 4 | 82 | 394 | 167 | 449 | 8.21e-82 | 258 |
| MsG0580027503.01.T01 | MTR_7g092750 | 42.388 | 335 | 149 | 4 | 69 | 394 | 161 | 460 | 1.06e-80 | 256 |
| MsG0580027503.01.T01 | MTR_4g053250 | 39.410 | 373 | 166 | 6 | 22 | 394 | 146 | 458 | 2.76e-76 | 245 |
| MsG0580027503.01.T01 | MTR_5g054900 | 40.181 | 331 | 154 | 3 | 71 | 394 | 57 | 350 | 3.63e-72 | 230 |
| MsG0580027503.01.T01 | MTR_5g054900 | 40.181 | 331 | 154 | 3 | 71 | 394 | 138 | 431 | 2.09e-71 | 231 |
| MsG0580027503.01.T01 | MTR_5g054900 | 39.577 | 331 | 152 | 4 | 71 | 394 | 57 | 346 | 1.85e-68 | 220 |
| MsG0580027503.01.T01 | MTR_5g054900 | 39.577 | 331 | 152 | 4 | 71 | 394 | 168 | 457 | 2.53e-67 | 221 |
| MsG0580027503.01.T01 | MTR_1g111310 | 41.615 | 322 | 149 | 4 | 77 | 393 | 416 | 703 | 7.29e-67 | 225 |
| MsG0580027503.01.T01 | MTR_1g111310 | 40.252 | 318 | 147 | 3 | 77 | 391 | 49 | 326 | 1.75e-59 | 206 |
| MsG0580027503.01.T01 | MTR_7g092750 | 38.369 | 331 | 142 | 5 | 69 | 394 | 161 | 434 | 1.11e-64 | 213 |
| MsG0580027503.01.T01 | MTR_0126s0080 | 36.096 | 374 | 176 | 8 | 4 | 350 | 122 | 459 | 4.06e-58 | 197 |
| MsG0580027503.01.T01 | MTR_3g044820 | 43.195 | 169 | 89 | 3 | 77 | 238 | 40 | 208 | 8.50e-41 | 144 |
| MsG0580027503.01.T01 | MTR_1g111320 | 64.000 | 50 | 18 | 0 | 82 | 131 | 146 | 195 | 1.40e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027503.01.T01 | AT1G77920 | 48.780 | 410 | 147 | 7 | 1 | 394 | 1 | 363 | 6.29e-116 | 343 |
| MsG0580027503.01.T01 | AT1G22070 | 46.667 | 405 | 158 | 5 | 14 | 398 | 17 | 383 | 8.66e-111 | 330 |
| MsG0580027503.01.T01 | AT5G10030 | 46.447 | 394 | 172 | 4 | 4 | 394 | 2 | 359 | 1.34e-108 | 324 |
| MsG0580027503.01.T01 | AT5G10030 | 46.447 | 394 | 172 | 4 | 4 | 394 | 2 | 359 | 1.34e-108 | 324 |
| MsG0580027503.01.T01 | AT5G10030 | 46.447 | 394 | 172 | 4 | 4 | 394 | 2 | 359 | 1.34e-108 | 324 |
| MsG0580027503.01.T01 | AT5G10030 | 46.447 | 394 | 172 | 4 | 4 | 394 | 2 | 359 | 1.34e-108 | 324 |
| MsG0580027503.01.T01 | AT5G10030 | 46.447 | 394 | 172 | 4 | 4 | 394 | 2 | 359 | 1.34e-108 | 324 |
| MsG0580027503.01.T01 | AT5G65210 | 44.913 | 403 | 182 | 5 | 4 | 402 | 2 | 368 | 3.84e-108 | 323 |
| MsG0580027503.01.T01 | AT5G65210 | 44.913 | 403 | 182 | 5 | 4 | 402 | 2 | 368 | 3.84e-108 | 323 |
| MsG0580027503.01.T01 | AT5G65210 | 44.913 | 403 | 182 | 5 | 4 | 402 | 2 | 368 | 3.84e-108 | 323 |
| MsG0580027503.01.T01 | AT5G65210 | 44.913 | 403 | 182 | 5 | 4 | 402 | 2 | 368 | 3.84e-108 | 323 |
| MsG0580027503.01.T01 | AT5G65210 | 44.913 | 403 | 182 | 5 | 4 | 402 | 2 | 368 | 3.84e-108 | 323 |
| MsG0580027503.01.T01 | AT5G65210 | 44.913 | 403 | 182 | 5 | 4 | 402 | 2 | 368 | 3.84e-108 | 323 |
| MsG0580027503.01.T01 | AT5G65210 | 48.494 | 332 | 134 | 3 | 72 | 402 | 3 | 298 | 4.16e-98 | 295 |
| MsG0580027503.01.T01 | AT1G08320 | 42.778 | 360 | 154 | 7 | 46 | 394 | 8 | 326 | 2.72e-84 | 261 |
| MsG0580027503.01.T01 | AT1G08320 | 42.778 | 360 | 154 | 7 | 46 | 394 | 8 | 326 | 2.72e-84 | 261 |
| MsG0580027503.01.T01 | AT1G08320 | 42.778 | 360 | 154 | 7 | 46 | 394 | 132 | 450 | 7.34e-83 | 262 |
| MsG0580027503.01.T01 | AT1G08320 | 42.778 | 360 | 154 | 7 | 46 | 394 | 132 | 450 | 7.34e-83 | 262 |
| MsG0580027503.01.T01 | AT1G08320 | 42.778 | 360 | 154 | 7 | 46 | 394 | 132 | 450 | 7.34e-83 | 262 |
| MsG0580027503.01.T01 | AT5G06950 | 44.828 | 319 | 133 | 4 | 82 | 394 | 46 | 327 | 2.20e-79 | 248 |
| MsG0580027503.01.T01 | AT5G06950 | 44.828 | 319 | 133 | 4 | 82 | 394 | 46 | 327 | 2.20e-79 | 248 |
| MsG0580027503.01.T01 | AT5G06950 | 44.828 | 319 | 133 | 4 | 82 | 394 | 46 | 327 | 2.20e-79 | 248 |
| MsG0580027503.01.T01 | AT5G06950 | 44.828 | 319 | 133 | 4 | 82 | 394 | 46 | 327 | 2.20e-79 | 248 |
| MsG0580027503.01.T01 | AT5G06950 | 44.828 | 319 | 133 | 4 | 82 | 394 | 46 | 327 | 2.20e-79 | 248 |
| MsG0580027503.01.T01 | AT5G06839 | 42.899 | 338 | 145 | 3 | 72 | 394 | 108 | 412 | 7.77e-79 | 249 |
| MsG0580027503.01.T01 | AT5G06839 | 42.899 | 338 | 145 | 3 | 72 | 394 | 151 | 455 | 1.59e-78 | 250 |
| MsG0580027503.01.T01 | AT5G06839 | 42.183 | 339 | 147 | 3 | 72 | 394 | 108 | 413 | 8.29e-78 | 247 |
| MsG0580027503.01.T01 | AT3G12250 | 44.514 | 319 | 134 | 4 | 82 | 394 | 19 | 300 | 1.28e-77 | 243 |
| MsG0580027503.01.T01 | AT3G12250 | 44.514 | 319 | 134 | 4 | 82 | 394 | 46 | 327 | 1.32e-77 | 243 |
| MsG0580027503.01.T01 | AT3G12250 | 44.514 | 319 | 134 | 4 | 82 | 394 | 46 | 327 | 1.32e-77 | 243 |
| MsG0580027503.01.T01 | AT3G12250 | 44.514 | 319 | 134 | 4 | 82 | 394 | 46 | 327 | 1.32e-77 | 243 |
| MsG0580027503.01.T01 | AT3G12250 | 44.514 | 319 | 134 | 4 | 82 | 394 | 46 | 327 | 1.32e-77 | 243 |
| MsG0580027503.01.T01 | AT3G12250 | 44.514 | 319 | 134 | 4 | 82 | 394 | 40 | 321 | 1.56e-77 | 243 |
| MsG0580027503.01.T01 | AT3G12250 | 44.514 | 319 | 134 | 4 | 82 | 394 | 71 | 352 | 6.63e-77 | 243 |
| MsG0580027503.01.T01 | AT5G06960 | 43.260 | 319 | 138 | 3 | 82 | 394 | 46 | 327 | 3.24e-76 | 240 |
| MsG0580027503.01.T01 | AT5G06960 | 43.260 | 319 | 138 | 3 | 82 | 394 | 46 | 327 | 3.24e-76 | 240 |
| MsG0580027503.01.T01 | AT5G06960 | 43.260 | 319 | 138 | 3 | 82 | 394 | 26 | 307 | 3.55e-76 | 239 |
| MsG0580027503.01.T01 | AT1G68640 | 40.181 | 331 | 153 | 4 | 72 | 394 | 156 | 449 | 7.89e-66 | 217 |
| MsG0580027503.01.T01 | AT4G18690 | 27.542 | 236 | 148 | 6 | 158 | 382 | 18 | 241 | 1.95e-13 | 70.9 |
Find 73 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTGGATGTCGGTTATA+TGG | 0.184139 | 5:-62161737 | MsG0580027503.01.T01:CDS |
| TCTTTGTTTGAAATTGAATA+TGG | 0.229069 | 5:-62161607 | MsG0580027503.01.T01:CDS |
| TATAGTCTATATTCGTTAAT+AGG | 0.259373 | 5:-62161310 | MsG0580027503.01.T01:intron |
| CAAGCTGATCCCTTGGATTT+CGG | 0.267505 | 5:-62160784 | MsG0580027503.01.T01:CDS |
| TTTATACAGAAACAGTTTAT+TGG | 0.277561 | 5:-62161752 | MsG0580027503.01.T01:CDS |
| ATTTCTTCAATATATATATA+TGG | 0.278278 | 5:-62160281 | MsG0580027503.01.T01:three_prime_UTR |
| TGCTCAAGGCTTGTTGGCTA+TGG | 0.316587 | 5:-62160452 | MsG0580027503.01.T01:CDS |
| ATCCTCCTATCCAAAGAAAA+AGG | 0.354680 | 5:+62161386 | None:intergenic |
| TTATGTTCATCTTCAACATT+GGG | 0.356119 | 5:+62162660 | None:intergenic |
| TCATTCAAATTCTCAAGTTT+CGG | 0.363992 | 5:+62160913 | None:intergenic |
| GCTGAAGATGCACTGTCAAT+AGG | 0.369583 | 5:-62160844 | MsG0580027503.01.T01:CDS |
| CTTATGTTCATCTTCAACAT+TGG | 0.379233 | 5:+62162659 | None:intergenic |
| GCTCAAGGCTTGTTGGCTAT+GGG | 0.379556 | 5:-62160451 | MsG0580027503.01.T01:CDS |
| CTAACCTGAGTTTATTGTTC+CGG | 0.383626 | 5:+62161708 | None:intergenic |
| CTCAACTAATCGCGCCGAAA+AGG | 0.387136 | 5:-62162769 | MsG0580027503.01.T01:CDS |
| AATAAGATAATAGTAATTAG+TGG | 0.395383 | 5:+62161334 | None:intergenic |
| TCAAGCTGCTCAAGGCTTGT+TGG | 0.395796 | 5:-62160458 | MsG0580027503.01.T01:CDS |
| ACAGGCTTATGTTCAACAAC+TGG | 0.406023 | 5:-62161936 | MsG0580027503.01.T01:intron |
| ACTACGGTTTGTATAGCTCT+TGG | 0.411035 | 5:-62160212 | MsG0580027503.01.T01:three_prime_UTR |
| CTTTCAGATGGCTGCTGCCA+TGG | 0.412683 | 5:-62160752 | MsG0580027503.01.T01:CDS |
| TATCGAGAAAACAAGAAAAC+AGG | 0.417815 | 5:-62161876 | MsG0580027503.01.T01:intron |
| CTTTGCAGGCAGATCACCTT+AGG | 0.420677 | 5:-62160522 | MsG0580027503.01.T01:intron |
| TTATTGGATGTCGGTTATAT+GGG | 0.423086 | 5:-62161736 | MsG0580027503.01.T01:CDS |
| CCTCCCACATAGTCACTTGA+AGG | 0.428980 | 5:+62162726 | None:intergenic |
| AAGGTTCTCTTGATTCTTGA+GGG | 0.435161 | 5:+62162511 | None:intergenic |
| CCCTTGGATTTCGGAAACTA+CGG | 0.436857 | 5:-62160775 | MsG0580027503.01.T01:CDS |
| CAAGAATCAAGAGAACCTTC+TGG | 0.437311 | 5:-62162507 | MsG0580027503.01.T01:CDS |
| TACTGCTTCTCCTTTGTCCA+TGG | 0.443791 | 5:+62160735 | None:intergenic |
| CTGAAGATGCACTGTCAATA+GGG | 0.444666 | 5:-62160843 | MsG0580027503.01.T01:CDS |
| CTACGGTTTGTATAGCTCTT+GGG | 0.447566 | 5:-62160211 | MsG0580027503.01.T01:three_prime_UTR |
| GACAAAGGAGAAGCAGTAGA+AGG | 0.456711 | 5:-62160730 | MsG0580027503.01.T01:CDS |
| AGTGTTGAGTAGGGTAGAAA+TGG | 0.460652 | 5:+62160371 | None:intergenic |
| CAACATTCAAGCTGATCCCT+TGG | 0.462368 | 5:-62160791 | MsG0580027503.01.T01:CDS |
| TCTTAATTTGAGTGTTGAGT+AGG | 0.465347 | 5:+62160361 | None:intergenic |
| GTCGGTTATATGGGAACGTC+CGG | 0.469360 | 5:-62161727 | MsG0580027503.01.T01:CDS |
| GAAGGTTCTCTTGATTCTTG+AGG | 0.474792 | 5:+62162510 | None:intergenic |
| TGTTGTTGATCATACTCTGC+TGG | 0.478454 | 5:+62160809 | None:intergenic |
| TCTATTTAATCTCTGGCGTA+TGG | 0.481044 | 5:-62161426 | MsG0580027503.01.T01:CDS |
| ATGTCACGCATCTTATCAAT+TGG | 0.485700 | 5:-62160481 | MsG0580027503.01.T01:CDS |
| CTCAAGGCTTGTTGGCTATG+GGG | 0.490238 | 5:-62160450 | MsG0580027503.01.T01:CDS |
| CTTAATTTGAGTGTTGAGTA+GGG | 0.496496 | 5:+62160362 | None:intergenic |
| CATAAGTAGCATGGAGAACA+AGG | 0.509417 | 5:-62162642 | MsG0580027503.01.T01:intron |
| CACATAGTCACTTGAAGGAA+TGG | 0.522645 | 5:+62162731 | None:intergenic |
| CATTCCTTCAAGTGACTATG+TGG | 0.523116 | 5:-62162730 | MsG0580027503.01.T01:CDS |
| TCAAGGCTTGTTGGCTATGG+GGG | 0.523504 | 5:-62160449 | MsG0580027503.01.T01:CDS |
| AGATGCACTGTCAATAGGGT+TGG | 0.527361 | 5:-62160839 | MsG0580027503.01.T01:CDS |
| ATAACAGAGTTTGTTGCCTA+AGG | 0.529419 | 5:+62160506 | None:intergenic |
| TTGAAATTGAATATGGACGT+TGG | 0.536052 | 5:-62161600 | MsG0580027503.01.T01:CDS |
| TCAATTGGTCAAGCTGCTCA+AGG | 0.536456 | 5:-62160466 | MsG0580027503.01.T01:CDS |
| TTCGCACTCTTAGTTCATTG+TGG | 0.540430 | 5:-62160411 | MsG0580027503.01.T01:CDS |
| TATTCAAGAACCTGTTCCTA+AGG | 0.542554 | 5:-62162469 | MsG0580027503.01.T01:intron |
| TAGATTGAAGCTCATGCAGT+TGG | 0.542577 | 5:-62161906 | MsG0580027503.01.T01:CDS |
| CGGAAACTACGGCTTTCAGA+TGG | 0.543160 | 5:-62160764 | MsG0580027503.01.T01:CDS |
| AATGAAAGCAGAAGCTGCAA+AGG | 0.554661 | 5:-62161458 | MsG0580027503.01.T01:CDS |
| AGAAACAGTTTATTGGATGT+CGG | 0.555658 | 5:-62161745 | MsG0580027503.01.T01:CDS |
| ATAAGATAATAGTAATTAGT+GGG | 0.559727 | 5:+62161335 | None:intergenic |
| GTAGTATGAACTTTGCATCA+TGG | 0.582510 | 5:+62160230 | None:intergenic |
| GCCGTAGTTTCCGAAATCCA+AGG | 0.586415 | 5:+62160774 | None:intergenic |
| GAAGATGAACATAAGTAGCA+TGG | 0.592197 | 5:-62162651 | MsG0580027503.01.T01:CDS |
| TGTACATTTAGAATTTGTGA+TGG | 0.598170 | 5:+62161358 | None:intergenic |
| GCGCGGCTGCTCGAAAATGT+CGG | 0.599361 | 5:-62162040 | MsG0580027503.01.T01:CDS |
| ATGGCTGCTGCCATGGACAA+AGG | 0.602885 | 5:-62160745 | MsG0580027503.01.T01:CDS |
| GTCTCTTGATCATCTCCAGA+AGG | 0.603267 | 5:+62162492 | None:intergenic |
| ATGATGCAAAGTTCATACTA+CGG | 0.611426 | 5:-62160228 | MsG0580027503.01.T01:three_prime_UTR |
| CTCTGGCGTATGGAAATCAC+CGG | 0.616184 | 5:-62161416 | MsG0580027503.01.T01:CDS |
| TTCATCTACTTGTCGAGAGT+AGG | 0.630773 | 5:-62161507 | MsG0580027503.01.T01:CDS |
| CCGTAGTTTCCGAAATCCAA+GGG | 0.636532 | 5:+62160775 | None:intergenic |
| CCTTCAAGTGACTATGTGGG+AGG | 0.650193 | 5:-62162726 | MsG0580027503.01.T01:CDS |
| ATTCCTTCAAGTGACTATGT+GGG | 0.664208 | 5:-62162729 | MsG0580027503.01.T01:CDS |
| ACGTCCGGAACAATAAACTC+AGG | 0.666698 | 5:-62161712 | MsG0580027503.01.T01:intron |
| CTTGCTGAGATGATAAACGC+AGG | 0.683767 | 5:+62160866 | None:intergenic |
| TATGTTCATCTTCAACATTG+GGG | 0.698417 | 5:+62162661 | None:intergenic |
| ACGTCAAGCACAGAATCGCG+CGG | 0.719929 | 5:-62162057 | MsG0580027503.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAATATAAAATCATAATT+TGG | - | Chr5:62162277-62162296 | MsG0580027503.01.T01:intron | 10.0% |
| !! | ATTTCTTCAATATATATATA+TGG | - | Chr5:62162687-62162706 | MsG0580027503.01.T01:CDS | 10.0% |
| !! | AATAAGATAATAGTAATTAG+TGG | + | Chr5:62161637-62161656 | None:intergenic | 15.0% |
| !! | AGTAGAAAAAATTGAAATAA+CGG | - | Chr5:62160540-62160559 | MsG0580027503.01.T01:intron | 15.0% |
| !! | ATAAGATAATAGTAATTAGT+GGG | + | Chr5:62161636-62161655 | None:intergenic | 15.0% |
| !! | GTTGTAAAAATTGAATTTAT+AGG | - | Chr5:62160963-62160982 | MsG0580027503.01.T01:CDS | 15.0% |
| !! | TAAAAATTGAATTTATAGGA+AGG | - | Chr5:62160967-62160986 | MsG0580027503.01.T01:CDS | 15.0% |
| !!! | AATTAATTTTTTTTGACAGA+AGG | + | Chr5:62160811-62160830 | None:intergenic | 15.0% |
| !! | TATAGTCTATATTCGTTAAT+AGG | - | Chr5:62161658-62161677 | MsG0580027503.01.T01:intron | 20.0% |
| !! | TTTATACAGAAACAGTTTAT+TGG | - | Chr5:62161216-62161235 | MsG0580027503.01.T01:intron | 20.0% |
| !! | TTTATATAAAATAGAGGAAG+AGG | + | Chr5:62161146-62161165 | None:intergenic | 20.0% |
| !! | TTTGAAAAAGATTTGAGTAT+TGG | + | Chr5:62161492-62161511 | None:intergenic | 20.0% |
| !!! | ATAGTTTTAACATAGTATCA+TGG | - | Chr5:62160771-62160790 | MsG0580027503.01.T01:CDS | 20.0% |
| !!! | GAATTTCTATTTTGTTTCTA+TGG | - | Chr5:62160364-62160383 | MsG0580027503.01.T01:CDS | 20.0% |
| !!! | TCTTTGTTTGAAATTGAATA+TGG | - | Chr5:62161361-62161380 | MsG0580027503.01.T01:CDS | 20.0% |
| ! | ATCTGTAAGAAAAAGTCAAA+TGG | + | Chr5:62162028-62162047 | None:intergenic | 25.0% |
| ! | GTTTCTCAATATCTATGTAT+AGG | - | Chr5:62160881-62160900 | MsG0580027503.01.T01:CDS | 25.0% |
| ! | TCATTCAAATTCTCAAGTTT+CGG | + | Chr5:62162058-62162077 | None:intergenic | 25.0% |
| ! | TCGTTAATAGGTCAAAATAA+AGG | - | Chr5:62161670-62161689 | MsG0580027503.01.T01:intron | 25.0% |
| ! | TTAAAGAGAATTGTTTAGCT+TGG | - | Chr5:62160829-62160848 | MsG0580027503.01.T01:CDS | 25.0% |
| ! | TTATGTTCATCTTCAACATT+GGG | + | Chr5:62160311-62160330 | None:intergenic | 25.0% |
| !! | GATGTTTTCTATTTAATCTC+TGG | - | Chr5:62161535-62161554 | MsG0580027503.01.T01:CDS | 25.0% |
| !! | TAAGGATGACGATTTTTATA+TGG | + | Chr5:62161123-62161142 | None:intergenic | 25.0% |
| !! | TGATGTAATTTTATCACCTT+AGG | + | Chr5:62160518-62160537 | None:intergenic | 25.0% |
| !! | TGTACATTTAGAATTTGTGA+TGG | + | Chr5:62161613-62161632 | None:intergenic | 25.0% |
| AAAGACGAGAAAAATAACAC+TGG | - | Chr5:62160571-62160590 | MsG0580027503.01.T01:intron | 30.0% | |
| AATTTAAACTTCGTCTCTTG+CGG | - | Chr5:62161807-62161826 | MsG0580027503.01.T01:intron | 30.0% | |
| ACGAATTTACAACTGTTTAG+AGG | - | Chr5:62161783-62161802 | MsG0580027503.01.T01:intron | 30.0% | |
| AGAAACAGTTTATTGGATGT+CGG | - | Chr5:62161223-62161242 | MsG0580027503.01.T01:intron | 30.0% | |
| ATAAAATAGAGGAAGAGGTA+AGG | + | Chr5:62161141-62161160 | None:intergenic | 30.0% | |
| ATGATGCAAAGTTCATACTA+CGG | - | Chr5:62162740-62162759 | MsG0580027503.01.T01:CDS | 30.0% | |
| CTTATGTTCATCTTCAACAT+TGG | + | Chr5:62160312-62160331 | None:intergenic | 30.0% | |
| GTGTATTAGAATTCAAACGT+GGG | - | Chr5:62162355-62162374 | MsG0580027503.01.T01:intron | 30.0% | |
| TATCCATATTTATCCTTGCA+GGG | - | Chr5:62161193-62161212 | MsG0580027503.01.T01:intron | 30.0% | |
| TATCGAGAAAACAAGAAAAC+AGG | - | Chr5:62161092-62161111 | MsG0580027503.01.T01:intron | 30.0% | |
| TATGTTCATCTTCAACATTG+GGG | + | Chr5:62160310-62160329 | None:intergenic | 30.0% | |
| TGTGTATTAGAATTCAAACG+TGG | - | Chr5:62162354-62162373 | MsG0580027503.01.T01:intron | 30.0% | |
| TTATCCATATTTATCCTTGC+AGG | - | Chr5:62161192-62161211 | MsG0580027503.01.T01:intron | 30.0% | |
| TTGAAATTGAATATGGACGT+TGG | - | Chr5:62161368-62161387 | MsG0580027503.01.T01:CDS | 30.0% | |
| TTTGTATGTTTGTGATTCAC+AGG | - | Chr5:62161014-62161033 | MsG0580027503.01.T01:intron | 30.0% | |
| ! | AATTTTATCACCTTAGGAAC+AGG | + | Chr5:62160512-62160531 | None:intergenic | 30.0% |
| ! | TCATACATGTTCATCCTTTT+CGG | + | Chr5:62160216-62160235 | None:intergenic | 30.0% |
| ! | TTATTGGATGTCGGTTATAT+GGG | - | Chr5:62161232-62161251 | MsG0580027503.01.T01:intron | 30.0% |
| ! | TTTATTGGATGTCGGTTATA+TGG | - | Chr5:62161231-62161250 | MsG0580027503.01.T01:intron | 30.0% |
| !! | AGTAGAAGGTTTTGTAATTC+AGG | - | Chr5:62162252-62162271 | MsG0580027503.01.T01:intron | 30.0% |
| !! | CTTAATTTGAGTGTTGAGTA+GGG | + | Chr5:62162609-62162628 | None:intergenic | 30.0% |
| !! | TCTTAATTTGAGTGTTGAGT+AGG | + | Chr5:62162610-62162629 | None:intergenic | 30.0% |
| AAACCCTGCAAGGATAAATA+TGG | + | Chr5:62161199-62161218 | None:intergenic | 35.0% | |
| AAGGTTCTCTTGATTCTTGA+GGG | + | Chr5:62160460-62160479 | None:intergenic | 35.0% | |
| ATCCTCCTATCCAAAGAAAA+AGG | + | Chr5:62161585-62161604 | None:intergenic | 35.0% | |
| ATGTCACGCATCTTATCAAT+TGG | - | Chr5:62162487-62162506 | MsG0580027503.01.T01:CDS | 35.0% | |
| ATTCCTTCAAGTGACTATGT+GGG | - | Chr5:62160239-62160258 | MsG0580027503.01.T01:three_prime_UTR | 35.0% | |
| CTAACCTGAGTTTATTGTTC+CGG | + | Chr5:62161263-62161282 | None:intergenic | 35.0% | |
| GAAGATGAACATAAGTAGCA+TGG | - | Chr5:62160317-62160336 | MsG0580027503.01.T01:three_prime_UTR | 35.0% | |
| GTAGTATGAACTTTGCATCA+TGG | + | Chr5:62162741-62162760 | None:intergenic | 35.0% | |
| TAGCTTGGAAGAGTTCATAA+TGG | - | Chr5:62160844-62160863 | MsG0580027503.01.T01:CDS | 35.0% | |
| TATTAGAATTCAAACGTGGG+TGG | - | Chr5:62162358-62162377 | MsG0580027503.01.T01:intron | 35.0% | |
| TATTCAAGAACCTGTTCCTA+AGG | - | Chr5:62160499-62160518 | MsG0580027503.01.T01:CDS | 35.0% | |
| TCAGCTCAGTGGTAAAATAA+TGG | + | Chr5:62161841-62161860 | None:intergenic | 35.0% | |
| TCTATTTAATCTCTGGCGTA+TGG | - | Chr5:62161542-62161561 | MsG0580027503.01.T01:CDS | 35.0% | |
| ! | GCATTTTTCTTCTTCTTTGC+AGG | - | Chr5:62162432-62162451 | MsG0580027503.01.T01:intron | 35.0% |
| ! | TGTCATTTCATGTAAACCTC+AGG | - | Chr5:62161943-62161962 | MsG0580027503.01.T01:intron | 35.0% |
| !! | ATAACAGAGTTTGTTGCCTA+AGG | + | Chr5:62162465-62162484 | None:intergenic | 35.0% |
| !! | TGACTTTTTCTTACAGATCG+TGG | - | Chr5:62162030-62162049 | MsG0580027503.01.T01:CDS | 35.0% |
| AATGAAAGCAGAAGCTGCAA+AGG | - | Chr5:62161510-62161529 | MsG0580027503.01.T01:CDS | 40.0% | |
| ACAGGCTTATGTTCAACAAC+TGG | - | Chr5:62161032-62161051 | MsG0580027503.01.T01:intron | 40.0% | |
| ACTACGGTTTGTATAGCTCT+TGG | - | Chr5:62162756-62162775 | MsG0580027503.01.T01:CDS | 40.0% | |
| ATCAGACATAACATGTGTCG+TGG | - | Chr5:62162322-62162341 | MsG0580027503.01.T01:intron | 40.0% | |
| CAAGAATCAAGAGAACCTTC+TGG | - | Chr5:62160461-62160480 | MsG0580027503.01.T01:CDS | 40.0% | |
| CACATAGTCACTTGAAGGAA+TGG | + | Chr5:62160240-62160259 | None:intergenic | 40.0% | |
| CATAAGTAGCATGGAGAACA+AGG | - | Chr5:62160326-62160345 | MsG0580027503.01.T01:three_prime_UTR | 40.0% | |
| CATTCCTTCAAGTGACTATG+TGG | - | Chr5:62160238-62160257 | MsG0580027503.01.T01:three_prime_UTR | 40.0% | |
| CTACGGTTTGTATAGCTCTT+GGG | - | Chr5:62162757-62162776 | MsG0580027503.01.T01:CDS | 40.0% | |
| CTGAAGATGCACTGTCAATA+GGG | - | Chr5:62162125-62162144 | MsG0580027503.01.T01:intron | 40.0% | |
| GAAGGTTCTCTTGATTCTTG+AGG | + | Chr5:62160461-62160480 | None:intergenic | 40.0% | |
| GTTTCTGTATAAACCCTGCA+AGG | + | Chr5:62161209-62161228 | None:intergenic | 40.0% | |
| TAGATTGAAGCTCATGCAGT+TGG | - | Chr5:62161062-62161081 | MsG0580027503.01.T01:intron | 40.0% | |
| TGTTGTTGATCATACTCTGC+TGG | + | Chr5:62162162-62162181 | None:intergenic | 40.0% | |
| TTCATCTACTTGTCGAGAGT+AGG | - | Chr5:62161461-62161480 | MsG0580027503.01.T01:CDS | 40.0% | |
| TTCGCACTCTTAGTTCATTG+TGG | - | Chr5:62162557-62162576 | MsG0580027503.01.T01:intron | 40.0% | |
| ! | AAAATGTCGGCTGCGAAAAA+AGG | - | Chr5:62160941-62160960 | MsG0580027503.01.T01:CDS | 40.0% |
| ! | AGGACATGTTTCTATAGCGT+CGG | - | Chr5:62161963-62161982 | MsG0580027503.01.T01:intron | 40.0% |
| ! | AGTGTTGAGTAGGGTAGAAA+TGG | + | Chr5:62162600-62162619 | None:intergenic | 40.0% |
| ! | CTTATGATTTGTCAGCTCAG+TGG | + | Chr5:62161852-62161871 | None:intergenic | 40.0% |
| ! | GAACGCCTTTTTCTTTGGAT+AGG | - | Chr5:62161577-62161596 | MsG0580027503.01.T01:CDS | 40.0% |
| ACGTCCGGAACAATAAACTC+AGG | - | Chr5:62161256-62161275 | MsG0580027503.01.T01:intron | 45.0% | |
| AGATGCACTGTCAATAGGGT+TGG | - | Chr5:62162129-62162148 | MsG0580027503.01.T01:intron | 45.0% | |
| CAACATTCAAGCTGATCCCT+TGG | - | Chr5:62162177-62162196 | MsG0580027503.01.T01:intron | 45.0% | |
| CAAGCTGATCCCTTGGATTT+CGG | - | Chr5:62162184-62162203 | MsG0580027503.01.T01:intron | 45.0% | |
| CCCTTGGATTTCGGAAACTA+CGG | - | Chr5:62162193-62162212 | MsG0580027503.01.T01:intron | 45.0% | |
| CCGTAGTTTCCGAAATCCAA+GGG | + | Chr5:62162196-62162215 | None:intergenic | 45.0% | |
| CGCTATAGAAACATGTCCTG+AGG | + | Chr5:62161962-62161981 | None:intergenic | 45.0% | |
| CTTCGTCTCTTGCGGTTATA+TGG | - | Chr5:62161815-62161834 | MsG0580027503.01.T01:intron | 45.0% | |
| CTTGCTGAGATGATAAACGC+AGG | + | Chr5:62162105-62162124 | None:intergenic | 45.0% | |
| GACAAAGGAGAAGCAGTAGA+AGG | - | Chr5:62162238-62162257 | MsG0580027503.01.T01:intron | 45.0% | |
| GCTGAAGATGCACTGTCAAT+AGG | - | Chr5:62162124-62162143 | MsG0580027503.01.T01:intron | 45.0% | |
| GTCTCTTGATCATCTCCAGA+AGG | + | Chr5:62160479-62160498 | None:intergenic | 45.0% | |
| TACTGCTTCTCCTTTGTCCA+TGG | + | Chr5:62162236-62162255 | None:intergenic | 45.0% | |
| TCAATTGGTCAAGCTGCTCA+AGG | - | Chr5:62162502-62162521 | MsG0580027503.01.T01:CDS | 45.0% | |
| TCCTGTCATGTTTCGAAGCA+GGG | - | Chr5:62161335-62161354 | MsG0580027503.01.T01:CDS | 45.0% | |
| ! | CGCCTTTTTCTTTGGATAGG+AGG | - | Chr5:62161580-62161599 | MsG0580027503.01.T01:CDS | 45.0% |
| !! | CAAAGAAAAAGGCGTTCGAC+CGG | + | Chr5:62161574-62161593 | None:intergenic | 45.0% |
| !! | AAATAATTTATATAAAATAG+AGG | + | Chr5:62161152-62161171 | None:intergenic | 5.0% |
| !!! | TTTTAAAAAATATAATTTTG+AGG | + | Chr5:62161312-62161331 | None:intergenic | 5.0% |
| CCTCCCACATAGTCACTTGA+AGG | + | Chr5:62160245-62160264 | None:intergenic | 50.0% | |
| CCTTCAAGTGACTATGTGGG+AGG | - | Chr5:62160242-62160261 | MsG0580027503.01.T01:three_prime_UTR | 50.0% | |
| CGGAAACTACGGCTTTCAGA+TGG | - | Chr5:62162204-62162223 | MsG0580027503.01.T01:intron | 50.0% | |
| CTCAACTAATCGCGCCGAAA+AGG | - | Chr5:62160199-62160218 | MsG0580027503.01.T01:three_prime_UTR | 50.0% | |
| CTCTGGCGTATGGAAATCAC+CGG | - | Chr5:62161552-62161571 | MsG0580027503.01.T01:CDS | 50.0% | |
| CTTTGCAGGCAGATCACCTT+AGG | - | Chr5:62162446-62162465 | MsG0580027503.01.T01:intron | 50.0% | |
| GCCGTAGTTTCCGAAATCCA+AGG | + | Chr5:62162197-62162216 | None:intergenic | 50.0% | |
| GTCCTGTCATGTTTCGAAGC+AGG | - | Chr5:62161334-62161353 | MsG0580027503.01.T01:CDS | 50.0% | |
| GTCGGTTATATGGGAACGTC+CGG | - | Chr5:62161241-62161260 | MsG0580027503.01.T01:intron | 50.0% | |
| TCAAGCTGCTCAAGGCTTGT+TGG | - | Chr5:62162510-62162529 | MsG0580027503.01.T01:CDS | 50.0% | |
| TCCCTGCTTCGAAACATGAC+AGG | + | Chr5:62161339-62161358 | None:intergenic | 50.0% | |
| ! | CGGTCGAACGCCTTTTTCTT+TGG | - | Chr5:62161572-62161591 | MsG0580027503.01.T01:CDS | 50.0% |
| !! | AAGCGTGTGTTGACTAGACG+AGG | - | Chr5:62161869-62161888 | MsG0580027503.01.T01:intron | 50.0% |
| !! | CTCAAGGCTTGTTGGCTATG+GGG | - | Chr5:62162518-62162537 | MsG0580027503.01.T01:CDS | 50.0% |
| !! | GCTCAAGGCTTGTTGGCTAT+GGG | - | Chr5:62162517-62162536 | MsG0580027503.01.T01:CDS | 50.0% |
| !! | TCAAGGCTTGTTGGCTATGG+GGG | - | Chr5:62162519-62162538 | MsG0580027503.01.T01:CDS | 50.0% |
| !! | TGCTCAAGGCTTGTTGGCTA+TGG | - | Chr5:62162516-62162535 | MsG0580027503.01.T01:CDS | 50.0% |
| ACGTCAAGCACAGAATCGCG+CGG | - | Chr5:62160911-62160930 | MsG0580027503.01.T01:CDS | 55.0% | |
| ATGGCTGCTGCCATGGACAA+AGG | - | Chr5:62162223-62162242 | MsG0580027503.01.T01:intron | 55.0% | |
| CTTTCAGATGGCTGCTGCCA+TGG | - | Chr5:62162216-62162235 | MsG0580027503.01.T01:intron | 55.0% | |
| GCGCGGCTGCTCGAAAATGT+CGG | - | Chr5:62160928-62160947 | MsG0580027503.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 62160148 | 62162842 | 62160148 | ID=MsG0580027503.01;Name=MsG0580027503.01 |
| Chr5 | mRNA | 62160148 | 62162842 | 62160148 | ID=MsG0580027503.01.T01;Parent=MsG0580027503.01;Name=MsG0580027503.01.T01;_AED=0.43;_eAED=0.45;_QI=29|0.85|0.75|1|0.57|0.62|8|215|406 |
| Chr5 | exon | 62160148 | 62160536 | 62160148 | ID=MsG0580027503.01.T01:exon:13689;Parent=MsG0580027503.01.T01 |
| Chr5 | exon | 62160717 | 62160991 | 62160717 | ID=MsG0580027503.01.T01:exon:13688;Parent=MsG0580027503.01.T01 |
| Chr5 | exon | 62161311 | 62161634 | 62161311 | ID=MsG0580027503.01.T01:exon:13687;Parent=MsG0580027503.01.T01 |
| Chr5 | exon | 62161713 | 62161776 | 62161713 | ID=MsG0580027503.01.T01:exon:13686;Parent=MsG0580027503.01.T01 |
| Chr5 | exon | 62161877 | 62161954 | 62161877 | ID=MsG0580027503.01.T01:exon:13685;Parent=MsG0580027503.01.T01 |
| Chr5 | exon | 62162028 | 62162087 | 62162028 | ID=MsG0580027503.01.T01:exon:13684;Parent=MsG0580027503.01.T01 |
| Chr5 | exon | 62162470 | 62162544 | 62162470 | ID=MsG0580027503.01.T01:exon:13683;Parent=MsG0580027503.01.T01 |
| Chr5 | exon | 62162643 | 62162842 | 62162643 | ID=MsG0580027503.01.T01:exon:13682;Parent=MsG0580027503.01.T01 |
| Chr5 | five_prime_UTR | 62162814 | 62162842 | 62162814 | ID=MsG0580027503.01.T01:five_prime_utr;Parent=MsG0580027503.01.T01 |
| Chr5 | CDS | 62162643 | 62162813 | 62162643 | ID=MsG0580027503.01.T01:cds;Parent=MsG0580027503.01.T01 |
| Chr5 | CDS | 62162470 | 62162544 | 62162470 | ID=MsG0580027503.01.T01:cds;Parent=MsG0580027503.01.T01 |
| Chr5 | CDS | 62162028 | 62162087 | 62162028 | ID=MsG0580027503.01.T01:cds;Parent=MsG0580027503.01.T01 |
| Chr5 | CDS | 62161877 | 62161954 | 62161877 | ID=MsG0580027503.01.T01:cds;Parent=MsG0580027503.01.T01 |
| Chr5 | CDS | 62161713 | 62161776 | 62161713 | ID=MsG0580027503.01.T01:cds;Parent=MsG0580027503.01.T01 |
| Chr5 | CDS | 62161311 | 62161634 | 62161311 | ID=MsG0580027503.01.T01:cds;Parent=MsG0580027503.01.T01 |
| Chr5 | CDS | 62160717 | 62160991 | 62160717 | ID=MsG0580027503.01.T01:cds;Parent=MsG0580027503.01.T01 |
| Chr5 | CDS | 62160363 | 62160536 | 62160363 | ID=MsG0580027503.01.T01:cds;Parent=MsG0580027503.01.T01 |
| Chr5 | three_prime_UTR | 62160148 | 62160362 | 62160148 | ID=MsG0580027503.01.T01:three_prime_utr;Parent=MsG0580027503.01.T01 |
| Gene Sequence |
| Protein sequence |
