AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028219.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028219.01.T01 MTR_5g069480 69.608 204 26 4 11 181 197 397 1.48e-74 230
MsG0580028219.01.T01 MTR_3g082630 53.968 189 51 5 27 181 212 398 8.05e-51 169
MsG0580028219.01.T01 MTR_5g069480 93.056 72 5 0 11 82 197 268 1.16e-41 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028219.01.T01 AT3G07650 43.005 193 85 6 8 181 173 359 1.61e-34 125
MsG0580028219.01.T01 AT3G07650 43.005 193 85 6 8 181 173 359 1.61e-34 125
MsG0580028219.01.T01 AT3G07650 43.005 193 85 6 8 181 173 359 1.61e-34 125
MsG0580028219.01.T01 AT3G07650 43.005 193 85 6 8 181 173 359 1.61e-34 125
MsG0580028219.01.T01 AT5G48250 40.758 211 67 8 8 181 171 360 7.42e-31 115

Find 37 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGCAGCATTGCTGCATTC+TGG 0.314142 5:+76784394 None:intergenic
CAATGCTGTCATGCATTATA+AGG 0.348032 5:-76782658 MsG0580028219.01.T01:CDS
GAAAGGCCGTTCGTCAAAGC+TGG 0.410051 5:-76781421 MsG0580028219.01.T01:CDS
CTTCTCACAGGGAGCCTCCC+TGG 0.430627 5:-76782725 MsG0580028219.01.T01:intron
AGCAGATTGAATAGAATTCT+CGG 0.457491 5:+76782689 None:intergenic
GCAGATTGAATAGAATTCTC+GGG 0.465896 5:+76782690 None:intergenic
CACATGCCAAGGGCCGAGCC+TGG 0.473497 5:+76784351 None:intergenic
CTCGGGGCAAGGAGGACACC+AGG 0.476613 5:+76782707 None:intergenic
AGCTCACCTTGCACATGCCA+AGG 0.485851 5:+76784340 None:intergenic
TAAGTACCAGGCTCGGCCCT+TGG 0.490016 5:-76784357 MsG0580028219.01.T01:CDS
ATAGTGCAGGAGCTTTATGC+TGG 0.498770 5:+76785359 None:intergenic
CAGCTTCTGGTTGACTCAAA+GGG 0.501666 5:+76781380 None:intergenic
CAGATTCAATATTAAGTACC+AGG 0.515169 5:-76784369 MsG0580028219.01.T01:CDS
TGATTTCAACATAGATGAGA+TGG 0.515486 5:-76785314 MsG0580028219.01.T01:CDS
CTCGGCCCTTGGCATGTGCA+AGG 0.528760 5:-76784346 MsG0580028219.01.T01:CDS
AAAGGCCGTTCGTCAAAGCT+GGG 0.532849 5:-76781420 MsG0580028219.01.T01:CDS
GTTTCCCCAGCTTTGACGAA+CGG 0.538903 5:+76781415 None:intergenic
TGAATAGAATTCTCGGGGCA+AGG 0.546742 5:+76782696 None:intergenic
GATGTCAGAAAACGCGTGAA+AGG 0.547529 5:-76781438 MsG0580028219.01.T01:CDS
CAGCATTGCTGCATTCTGGT+TGG 0.554970 5:+76784398 None:intergenic
AAAGACATGTCTGCTAGTGC+TGG 0.564402 5:-76785193 MsG0580028219.01.T01:CDS
TTATCATCTTCACATAGTGC+AGG 0.566113 5:+76785346 None:intergenic
TCAAGGCGCTGTTGCTGCTG+AGG 0.568931 5:-76785158 MsG0580028219.01.T01:intron
GGCATGTGCAAGGTGAGCTA+CGG 0.586766 5:-76784336 MsG0580028219.01.T01:intron
TCAATATTAAGTACCAGGCT+CGG 0.589557 5:-76784364 MsG0580028219.01.T01:CDS
ATATGCTTCTCAGAAGGCGA+GGG 0.602807 5:-76781463 MsG0580028219.01.T01:CDS
AGTAAGATATGCTTCTCAGA+AGG 0.605674 5:-76781469 MsG0580028219.01.T01:CDS
GCTCACCTTGCACATGCCAA+GGG 0.607203 5:+76784341 None:intergenic
TGTGAAGATGATAAGTTGCT+TGG 0.611126 5:-76785337 MsG0580028219.01.T01:CDS
TCGGGGCAAGGAGGACACCA+GGG 0.628096 5:+76782708 None:intergenic
CAGATTGAATAGAATTCTCG+GGG 0.628312 5:+76782691 None:intergenic
GATATGCTTCTCAGAAGGCG+AGG 0.633409 5:-76781464 MsG0580028219.01.T01:CDS
TAGTGCAGGAGCTTTATGCT+GGG 0.635300 5:+76785360 None:intergenic
GCTGGTGATTCAAATTGTCA+AGG 0.642760 5:-76785175 MsG0580028219.01.T01:CDS
GGGCAAGGAGGACACCAGGG+AGG 0.662427 5:+76782711 None:intergenic
AAGGCCGTTCGTCAAAGCTG+GGG 0.706549 5:-76781419 MsG0580028219.01.T01:CDS
ATAGAATTCTCGGGGCAAGG+AGG 0.730840 5:+76782699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAATCATAGATATAT+TGG - Chr5:76782542-76782561 MsG0580028219.01.T01:intron 10.0%
!!! AAATGTATTTTAAATTGTAA+TGG + Chr5:76782685-76782704 None:intergenic 10.0%
!!! ATAATTGCTAATTTTAATTT+CGG - Chr5:76782791-76782810 MsG0580028219.01.T01:intron 10.0%
!!! ATTGAAAGATTTTAATATAT+GGG + Chr5:76783666-76783685 None:intergenic 10.0%
!!! CAATATATTATATTTTTGTT+TGG - Chr5:76783687-76783706 MsG0580028219.01.T01:intron 10.0%
!!! GATTTTTTTTTTGAAATATA+TGG + Chr5:76783635-76783654 None:intergenic 10.0%
!!! TATTGAAAGATTTTAATATA+TGG + Chr5:76783667-76783686 None:intergenic 10.0%
!! AAATAAAATAATACTACTTG+TGG - Chr5:76784740-76784759 MsG0580028219.01.T01:intron 15.0%
!! ATTATATACTTTCAAATAGT+TGG + Chr5:76783531-76783550 None:intergenic 15.0%
!! ATTGAAAATAACACTTATAA+TGG + Chr5:76782827-76782846 None:intergenic 15.0%
!! CTTTAAATGTCTATAAAAAA+CGG + Chr5:76784390-76784409 None:intergenic 15.0%
!! TAAACTTCAAATGAATATAA+AGG + Chr5:76782151-76782170 None:intergenic 15.0%
!!! AATTGTGCTTTTTTTTTATT+AGG - Chr5:76782872-76782891 MsG0580028219.01.T01:intron 15.0%
!!! ATTGTGCTTTTTTTTTATTA+GGG - Chr5:76782873-76782892 MsG0580028219.01.T01:intron 15.0%
!!! TGCTATATTTTTTTTTTTTG+AGG + Chr5:76782491-76782510 None:intergenic 15.0%
!! AAATGAATATAAAGGACTTA+AGG + Chr5:76782143-76782162 None:intergenic 20.0%
!! TTAAAGTAGTTGCAAATATA+TGG - Chr5:76785051-76785070 MsG0580028219.01.T01:intron 20.0%
!!! AAAGATTTTAATATATGGGA+TGG + Chr5:76783662-76783681 None:intergenic 20.0%
!!! CTGAACAGTTATTTATTTTA+CGG - Chr5:76782959-76782978 MsG0580028219.01.T01:intron 20.0%
!!! GAAAGAATAAGAGATTTTTA+AGG + Chr5:76784526-76784545 None:intergenic 20.0%
!!! TATCTAAACTTCTGTTTTTA+GGG - Chr5:76782329-76782348 MsG0580028219.01.T01:intron 20.0%
!!! TATTTATAGTTTGCTTTTGT+TGG - Chr5:76784549-76784568 MsG0580028219.01.T01:intron 20.0%
!!! TGCAACTACTTTAAAAATAA+GGG + Chr5:76785045-76785064 None:intergenic 20.0%
!!! TGCTATTTTGCATTTAAAAT+TGG - Chr5:76785119-76785138 MsG0580028219.01.T01:intron 20.0%
!!! TGTGTCTAAGAATTTTTTAT+AGG - Chr5:76783804-76783823 MsG0580028219.01.T01:intron 20.0%
!!! TTGATCATAGTTTTAAAACT+CGG + Chr5:76784011-76784030 None:intergenic 20.0%
!!! TTGCAACTACTTTAAAAATA+AGG + Chr5:76785046-76785065 None:intergenic 20.0%
!!! TTGTGCTTTTTTTTTATTAG+GGG - Chr5:76782874-76782893 MsG0580028219.01.T01:intron 20.0%
!!! TTTTATAGACATTTAAAGCT+AGG - Chr5:76784392-76784411 MsG0580028219.01.T01:CDS 20.0%
!!! TTTTTTTGAAATATATGGGA+TGG + Chr5:76783630-76783649 None:intergenic 20.0%
! AATAATACTACTTGTGGAAA+TGG - Chr5:76784746-76784765 MsG0580028219.01.T01:intron 25.0%
! AATTTATTGAAACAGTGACT+CGG + Chr5:76783858-76783877 None:intergenic 25.0%
! ATATTTAATACCTTCTCCAA+TGG - Chr5:76785017-76785036 MsG0580028219.01.T01:intron 25.0%
! ATTTGCCTTTCTAATTATCT+AGG + Chr5:76783460-76783479 None:intergenic 25.0%
! CAATTACATACATAACTACT+AGG - Chr5:76782659-76782678 MsG0580028219.01.T01:CDS 25.0%
! CCAAAATTATAGCTAACAAA+GGG + Chr5:76781661-76781680 None:intergenic 25.0%
! GATACTATTTACATATCCAA+TGG - Chr5:76784174-76784193 MsG0580028219.01.T01:intron 25.0%
! TAAAATTATATCAACGCCAT+TGG + Chr5:76784193-76784212 None:intergenic 25.0%
! TCTCTATTGATCTTATTCTT+AGG - Chr5:76784489-76784508 MsG0580028219.01.T01:intron 25.0%
! TTACTTATAATCTCAAAGCT+TGG - Chr5:76785229-76785248 MsG0580028219.01.T01:CDS 25.0%
! TTTGCCTTTCTAATTATCTA+GGG + Chr5:76783459-76783478 None:intergenic 25.0%
!! CGTTGATATAATTTTACTTG+TGG - Chr5:76784197-76784216 MsG0580028219.01.T01:intron 25.0%
!! TAGGAATGTGTTATTATTCA+TGG + Chr5:76784346-76784365 None:intergenic 25.0%
!! TATTAAGTGTTGTCAAATAG+TGG - Chr5:76781883-76781902 MsG0580028219.01.T01:intron 25.0%
!! TTTTGAACTTGAGAACTATA+CGG - Chr5:76781487-76781506 MsG0580028219.01.T01:intron 25.0%
!!! AAGAGATTTTTAAGGTAGTT+TGG + Chr5:76784518-76784537 None:intergenic 25.0%
!!! AAGAGCATAGTTTTAAAAAC+CGG - Chr5:76783041-76783060 MsG0580028219.01.T01:intron 25.0%
!!! ACAGTTATTTATTTTACGGA+AGG - Chr5:76782963-76782982 MsG0580028219.01.T01:intron 25.0%
!!! ATCTAAACTTCTGTTTTTAG+GGG - Chr5:76782330-76782349 MsG0580028219.01.T01:intron 25.0%
!!! ATTGCTAATTTTAATTTCGG+TGG - Chr5:76782794-76782813 MsG0580028219.01.T01:intron 25.0%
!!! CGGACACTATAATTTTTTAT+AGG + Chr5:76783887-76783906 None:intergenic 25.0%
!!! GAAGGTATTAAATATTGTAC+TGG + Chr5:76785012-76785031 None:intergenic 25.0%
!!! GTATCTAAACTTCTGTTTTT+AGG - Chr5:76782328-76782347 MsG0580028219.01.T01:intron 25.0%
!!! TCTGAAGAGTTTTTTGAAAA+TGG - Chr5:76781536-76781555 MsG0580028219.01.T01:intron 25.0%
!!! TTCAGTTTTAGTACTTAACA+GGG + Chr5:76782944-76782963 None:intergenic 25.0%
!!! TTTAAAAATAAGGGTACCAT+TGG + Chr5:76785036-76785055 None:intergenic 25.0%
AAAAATTCTTCGTTTCTGCA+AGG + Chr5:76783255-76783274 None:intergenic 30.0%
AAACTTGAACTAATTGCTAC+TGG - Chr5:76781780-76781799 MsG0580028219.01.T01:intron 30.0%
AACATTAAGTTTCCTTTGGT+AGG - Chr5:76782273-76782292 MsG0580028219.01.T01:intron 30.0%
AGAAATACAAAACCTACCAA+AGG + Chr5:76782288-76782307 None:intergenic 30.0%
AGAGAACATTAAGTTTCCTT+TGG - Chr5:76782269-76782288 MsG0580028219.01.T01:intron 30.0%
AGAGGGATAGAATATTGTAT+TGG - Chr5:76784885-76784904 MsG0580028219.01.T01:intron 30.0%
AGCAGATTGAATAGAATTCT+CGG + Chr5:76784091-76784110 None:intergenic 30.0%
CAGATTCAATATTAAGTACC+AGG - Chr5:76782408-76782427 MsG0580028219.01.T01:intron 30.0%
CATCTGGAAAACCATTAAAA+TGG + Chr5:76784419-76784438 None:intergenic 30.0%
CTCATATTATGTGTCTCATT+TGG + Chr5:76785179-76785198 None:intergenic 30.0%
CTGAAAACTGTGGAATAAAA+AGG + Chr5:76784660-76784679 None:intergenic 30.0%
CTTTCTTATCAAACCTGAAA+TGG + Chr5:76785290-76785309 None:intergenic 30.0%
GAAACCCTAGATAATTAGAA+AGG - Chr5:76783452-76783471 MsG0580028219.01.T01:intron 30.0%
GCCAAAATTATAGCTAACAA+AGG + Chr5:76781662-76781681 None:intergenic 30.0%
GCGGTAGTAATAAATAGAAT+AGG - Chr5:76784697-76784716 MsG0580028219.01.T01:intron 30.0%
GTAATAGTTATTCTTCTCAG+TGG + Chr5:76784923-76784942 None:intergenic 30.0%
TAAAACTATGATCAAGAGTG+TGG - Chr5:76784016-76784035 MsG0580028219.01.T01:intron 30.0%
TACAATATTCTATCCCTCTT+TGG + Chr5:76784884-76784903 None:intergenic 30.0%
TCTTAGACACAACTTTGATT+AGG + Chr5:76783795-76783814 None:intergenic 30.0%
TGATTTCAACATAGATGAGA+TGG - Chr5:76781463-76781482 MsG0580028219.01.T01:CDS 30.0%
TGGTGTAAAACAATGAGAAT+AGG + Chr5:76784326-76784345 None:intergenic 30.0%
TTCAAATTCACACAAATGCT+CGG + Chr5:76782623-76782642 None:intergenic 30.0%
TTCAGTTCACTGAAATGATT+AGG - Chr5:76784675-76784694 MsG0580028219.01.T01:intron 30.0%
TTGATTTCTCTACAATGCAA+AGG + Chr5:76782004-76782023 None:intergenic 30.0%
! CAATCAAACCTTTCATTTTC+TGG - Chr5:76782986-76783005 MsG0580028219.01.T01:intron 30.0%
! CCCTTTGTTAGCTATAATTT+TGG - Chr5:76781658-76781677 MsG0580028219.01.T01:intron 30.0%
! TAAAGCTAGGTCCATTTTAA+TGG - Chr5:76784405-76784424 MsG0580028219.01.T01:CDS 30.0%
! TCTCCTTGTTTAACACTTAA+CGG + Chr5:76783340-76783359 None:intergenic 30.0%
! TGGAATAAAAAGGTATAGCA+TGG + Chr5:76784650-76784669 None:intergenic 30.0%
!! ATATAGCACTCAAAAGTGTT+AGG - Chr5:76782503-76782522 MsG0580028219.01.T01:intron 30.0%
!! GTTCAGTTTTAGTACTTAAC+AGG + Chr5:76782945-76782964 None:intergenic 30.0%
!!! CATGTTTTTTGTTATGGTCT+TGG - Chr5:76784253-76784272 MsG0580028219.01.T01:intron 30.0%
!!! GAAGAGTTTTTTGAAAATGG+TGG - Chr5:76781539-76781558 MsG0580028219.01.T01:intron 30.0%
!!! TCTGCTCATGTTTTTTGTTA+TGG - Chr5:76784247-76784266 MsG0580028219.01.T01:intron 30.0%
AAACGCATAATATGAGACAG+AGG + Chr5:76784948-76784967 None:intergenic 35.0%
AACGCATAATATGAGACAGA+GGG + Chr5:76784947-76784966 None:intergenic 35.0%
AGTAAGATATGCTTCTCAGA+AGG - Chr5:76785308-76785327 MsG0580028219.01.T01:CDS 35.0%
AGTTCACTGAAATGATTAGG+CGG - Chr5:76784678-76784697 MsG0580028219.01.T01:intron 35.0%
ATAGAATCCACTTGAGTCAT+TGG - Chr5:76782582-76782601 MsG0580028219.01.T01:intron 35.0%
CAATAGAGACATTAGAGAGA+AGG + Chr5:76784478-76784497 None:intergenic 35.0%
CAATGCTGTCATGCATTATA+AGG - Chr5:76784119-76784138 MsG0580028219.01.T01:intron 35.0%
CAGATTGAATAGAATTCTCG+GGG + Chr5:76784089-76784108 None:intergenic 35.0%
CTCAGTTATGTGACATGTAA+CGG + Chr5:76781707-76781726 None:intergenic 35.0%
GAAAAACCTTAGACAACATC+TGG + Chr5:76784435-76784454 None:intergenic 35.0%
GATATAAGCCCACAAACAAA+GGG + Chr5:76783493-76783512 None:intergenic 35.0%
GCAGATTGAATAGAATTCTC+GGG + Chr5:76784090-76784109 None:intergenic 35.0%
GTTAACAAAGATACTAGTGC+TGG - Chr5:76783010-76783029 MsG0580028219.01.T01:intron 35.0%
GTTCACAAAGTGTATGGTAA+TGG + Chr5:76784591-76784610 None:intergenic 35.0%
TAGTTCGTTCACAAAGTGTA+TGG + Chr5:76784597-76784616 None:intergenic 35.0%
TATCACTATTGCACCAATGT+TGG + Chr5:76781750-76781769 None:intergenic 35.0%
TCAAAGCTTGGTTGCTATAT+GGG - Chr5:76785241-76785260 MsG0580028219.01.T01:CDS 35.0%
TCAAATTCACACAAATGCTC+GGG + Chr5:76782622-76782641 None:intergenic 35.0%
TCAATATTAAGTACCAGGCT+CGG - Chr5:76782413-76782432 MsG0580028219.01.T01:intron 35.0%
TGATATAAGCCCACAAACAA+AGG + Chr5:76783494-76783513 None:intergenic 35.0%
TGTGAAGATGATAAGTTGCT+TGG - Chr5:76781440-76781459 MsG0580028219.01.T01:CDS 35.0%
TGTTAACGCCAGAAAATGAA+AGG + Chr5:76782997-76783016 None:intergenic 35.0%
TTATCATCTTCACATAGTGC+AGG + Chr5:76781434-76781453 None:intergenic 35.0%
TTCATAGTGTTGTCCAATAC+CGG - Chr5:76781803-76781822 MsG0580028219.01.T01:intron 35.0%
TTTCAGTGAACTGAAAACTG+TGG + Chr5:76784670-76784689 None:intergenic 35.0%
! GTTATGATGAATGCCATTTC+AGG - Chr5:76785274-76785293 MsG0580028219.01.T01:CDS 35.0%
! TTTGATAGAGTTGATCGAGT+AGG + Chr5:76784365-76784384 None:intergenic 35.0%
!! ACATTTTTGCCCTTTGTTTG+TGG - Chr5:76783481-76783500 MsG0580028219.01.T01:intron 35.0%
!! CATTTTTGCCCTTTGTTTGT+GGG - Chr5:76783482-76783501 MsG0580028219.01.T01:intron 35.0%
!!! CATAGTTTTAAAAACCGGAC+CGG - Chr5:76783046-76783065 MsG0580028219.01.T01:intron 35.0%
!!! CATAGTTTTAAAACTCGGCT+CGG + Chr5:76784006-76784025 None:intergenic 35.0%
AATGAATGCAGGAGCAAGAT+AGG - Chr5:76783369-76783388 MsG0580028219.01.T01:intron 40.0%
ACTACTTGTGGAAATGGTGA+TGG - Chr5:76784752-76784771 MsG0580028219.01.T01:intron 40.0%
ACTTCTTCAATGCTTCTCAC+AGG - Chr5:76784040-76784059 MsG0580028219.01.T01:intron 40.0%
ATAATGCGATCAGCCAAAGA+GGG - Chr5:76784868-76784887 MsG0580028219.01.T01:intron 40.0%
ATTTCGCTACACTATTGCAC+CGG + Chr5:76781825-76781844 None:intergenic 40.0%
CCACCGTTAAGTGTTAAACA+AGG - Chr5:76783334-76783353 MsG0580028219.01.T01:intron 40.0%
CTCAAAGCTTGGTTGCTATA+TGG - Chr5:76785240-76785259 MsG0580028219.01.T01:CDS 40.0%
CTCTAGACTGATCTTCTAGT+CGG - Chr5:76782032-76782051 MsG0580028219.01.T01:intron 40.0%
CTTCTTCAATGCTTCTCACA+GGG - Chr5:76784041-76784060 MsG0580028219.01.T01:intron 40.0%
GAAAAACATGTCGATAGAGC+AGG - Chr5:76783295-76783314 MsG0580028219.01.T01:intron 40.0%
GACTATACGACAGATTGACT+CGG + Chr5:76783217-76783236 None:intergenic 40.0%
GAGCAGGAAAAGAAGAAGAA+AGG - Chr5:76783311-76783330 MsG0580028219.01.T01:intron 40.0%
GATGACTCGTTCTTATGACT+CGG + Chr5:76783907-76783926 None:intergenic 40.0%
GCTGGTGATTCAAATTGTCA+AGG - Chr5:76781602-76781621 MsG0580028219.01.T01:intron 40.0%
TGAGTCAATGGTCAAACCAT+GGG + Chr5:76783956-76783975 None:intergenic 40.0%
TGCACAGCTCTATAGGTAAT+GGG + Chr5:76781981-76782000 None:intergenic 40.0%
! CCTTGTTTAACACTTAACGG+TGG + Chr5:76783337-76783356 None:intergenic 40.0%
! GGTTTTCCAGATGTTGTCTA+AGG - Chr5:76784426-76784445 MsG0580028219.01.T01:CDS 40.0%
!! AAAGTGTATGGTAATGGCTG+AGG + Chr5:76784585-76784604 None:intergenic 40.0%
!! AAGTGTATGGTAATGGCTGA+GGG + Chr5:76784584-76784603 None:intergenic 40.0%
!! AATAAGGGTACCATTGGAGA+AGG + Chr5:76785030-76785049 None:intergenic 40.0%
!! GGTGTTTTTGCTCACAATTC+AGG - Chr5:76784773-76784792 MsG0580028219.01.T01:intron 40.0%
AAAGACATGTCTGCTAGTGC+TGG - Chr5:76781584-76781603 MsG0580028219.01.T01:intron 45.0%
AAGCGGTTCGAGTCAGTAAT+CGG - Chr5:76783109-76783128 MsG0580028219.01.T01:intron 45.0%
AATGCAGGAGCAAGATAGGT+TGG - Chr5:76783373-76783392 MsG0580028219.01.T01:intron 45.0%
ACCAATGTTGGACAACACTG+AGG + Chr5:76781738-76781757 None:intergenic 45.0%
ACCGAGTTTGGACGTTATAC+CGG + Chr5:76783162-76783181 None:intergenic 45.0%
ACCGGTATAACGTCCAAACT+CGG - Chr5:76783158-76783177 MsG0580028219.01.T01:intron 45.0%
ATATGCTTCTCAGAAGGCGA+GGG - Chr5:76785314-76785333 MsG0580028219.01.T01:CDS 45.0%
CATAATGCGATCAGCCAAAG+AGG - Chr5:76784867-76784886 MsG0580028219.01.T01:intron 45.0%
CGGCTGAGTTAGCATTTGAA+AGG - Chr5:76783400-76783419 MsG0580028219.01.T01:intron 45.0%
CGTCCAAACTCGGTTAAAAC+CGG - Chr5:76783168-76783187 MsG0580028219.01.T01:intron 45.0%
CTCAAGACCAATGACTCAAG+TGG + Chr5:76782592-76782611 None:intergenic 45.0%
CTCCGCTCTCGTAGTAAAAT+AGG + Chr5:76782900-76782919 None:intergenic 45.0%
CTGAGTCAATGGTCAAACCA+TGG + Chr5:76783957-76783976 None:intergenic 45.0%
GAGCTGTGTGAAATGAATGC+AGG - Chr5:76783358-76783377 MsG0580028219.01.T01:intron 45.0%
GATGTCAGAAAACGCGTGAA+AGG - Chr5:76785339-76785358 MsG0580028219.01.T01:CDS 45.0%
GGCTATAGCACTTAGCATAG+TGG - Chr5:76781904-76781923 MsG0580028219.01.T01:intron 45.0%
GTGCACAGCTCTATAGGTAA+TGG + Chr5:76781982-76782001 None:intergenic 45.0%
GTTCGAGTCAGTAATCGGAT+CGG - Chr5:76783114-76783133 MsG0580028219.01.T01:intron 45.0%
TCCTCAGTGTTGTCCAACAT+TGG - Chr5:76781734-76781753 MsG0580028219.01.T01:intron 45.0%
TGAATAGAATTCTCGGGGCA+AGG + Chr5:76784084-76784103 None:intergenic 45.0%
TGCTCACTATCACCAGAGAT+CGG + Chr5:76782092-76782111 None:intergenic 45.0%
TTGAGGCTCCTAAGATTACG+AGG + Chr5:76782474-76782493 None:intergenic 45.0%
! ATAGTGCAGGAGCTTTATGC+TGG + Chr5:76781421-76781440 None:intergenic 45.0%
! CTACACTATTGCACCGGTAT+TGG + Chr5:76781819-76781838 None:intergenic 45.0%
! GGCCTATTTTACTACGAGAG+CGG - Chr5:76782895-76782914 MsG0580028219.01.T01:intron 45.0%
! TAGTGCAGGAGCTTTATGCT+GGG + Chr5:76781420-76781439 None:intergenic 45.0%
! TCTTGTTATCTCCCGATCTC+TGG - Chr5:76782077-76782096 MsG0580028219.01.T01:intron 45.0%
!! AGCCTCCAGTTTTATAGGGA+CGG - Chr5:76782918-76782937 MsG0580028219.01.T01:intron 45.0%
!! CACTTGAGTCATTGGTCTTG+AGG - Chr5:76782590-76782609 MsG0580028219.01.T01:intron 45.0%
!! GTTTTTAGGGGTCATCAGCA+AGG - Chr5:76782342-76782361 MsG0580028219.01.T01:intron 45.0%
!! TTTTAAAAACCGGACCGGAC+CGG - Chr5:76783051-76783070 MsG0580028219.01.T01:intron 45.0%
!!! TCACCGGTTTTAACCGAGTT+TGG + Chr5:76783174-76783193 None:intergenic 45.0%
!!! ATTTTTTTTTTGAAATATAT+GGG + Chr5:76783634-76783653 None:intergenic 5.0%
AAAGGCCGTTCGTCAAAGCT+GGG - Chr5:76785357-76785376 MsG0580028219.01.T01:CDS 50.0%
ATAGAATTCTCGGGGCAAGG+AGG + Chr5:76784081-76784100 None:intergenic 50.0%
ATGGTCAAACCATGGGTCAC+TGG + Chr5:76783949-76783968 None:intergenic 50.0%
CAGCATTGCTGCATTCTGGT+TGG + Chr5:76782382-76782401 None:intergenic 50.0%
GATATGCTTCTCAGAAGGCG+AGG - Chr5:76785313-76785332 MsG0580028219.01.T01:CDS 50.0%
GATGCAGCATTGCTGCATTC+TGG + Chr5:76782386-76782405 None:intergenic 50.0%
GCTCACTATCACCAGAGATC+GGG + Chr5:76782091-76782110 None:intergenic 50.0%
GGATCGGACATGCAATCGAA+CGG - Chr5:76783130-76783149 MsG0580028219.01.T01:intron 50.0%
TGCAAGGCTACAGTGATGCT+AGG + Chr5:76783239-76783258 None:intergenic 50.0%
TGCAATCGAACGGTGAGAAC+CGG - Chr5:76783140-76783159 MsG0580028219.01.T01:intron 50.0%
TGGTTGAACCGCATGGGAAT+CGG + Chr5:76783929-76783948 None:intergenic 50.0%
! CAGGAGCAAGATAGGTTGGA+CGG - Chr5:76783377-76783396 MsG0580028219.01.T01:intron 50.0%
! GCAAAGGTGCACAGCTCTAT+AGG + Chr5:76781988-76782007 None:intergenic 50.0%
! GTTTCCCCAGCTTTGACGAA+CGG + Chr5:76785365-76785384 None:intergenic 50.0%
! TGCACTGGTCACTGAGTCAA+TGG + Chr5:76783968-76783987 None:intergenic 50.0%
!! AGCGGAGCCTCCAGTTTTAT+AGG - Chr5:76782913-76782932 MsG0580028219.01.T01:intron 50.0%
!! GCGGAGCCTCCAGTTTTATA+GGG - Chr5:76782914-76782933 MsG0580028219.01.T01:intron 50.0%
!!! TGACTCGCCGGTTTTCCAAA+CGG - Chr5:76783191-76783210 MsG0580028219.01.T01:intron 50.0%
AAGGCCGTTCGTCAAAGCTG+GGG - Chr5:76785358-76785377 MsG0580028219.01.T01:CDS 55.0%
AGCTCACCTTGCACATGCCA+AGG + Chr5:76782440-76782459 None:intergenic 55.0%
CAGGGCCGTCCCTATAAAAC+TGG + Chr5:76782926-76782945 None:intergenic 55.0%
CGAGTCATCCGATTCCCATG+CGG - Chr5:76783918-76783937 MsG0580028219.01.T01:intron 55.0%
GAAAGGCCGTTCGTCAAAGC+TGG - Chr5:76785356-76785375 MsG0580028219.01.T01:CDS 55.0%
GACTCGGCCGTTTGGAAAAC+CGG + Chr5:76783201-76783220 None:intergenic 55.0%
GCTCACCTTGCACATGCCAA+GGG + Chr5:76782439-76782458 None:intergenic 55.0%
GCTCCTAAGATTACGAGGCC+CGG + Chr5:76782469-76782488 None:intergenic 55.0%
GGCATGTGCAAGGTGAGCTA+CGG - Chr5:76782441-76782460 MsG0580028219.01.T01:intron 55.0%
GGCCGTCCCTATAAAACTGG+AGG + Chr5:76782923-76782942 None:intergenic 55.0%
GGTTAAAACCGGTGACTCGC+CGG - Chr5:76783179-76783198 MsG0580028219.01.T01:intron 55.0%
TTGGAAAACCGGCGAGTCAC+CGG + Chr5:76783190-76783209 None:intergenic 55.0%
! GAGCAAGATAGGTTGGACGG+CGG - Chr5:76783380-76783399 MsG0580028219.01.T01:intron 55.0%
! GGTCACTGGTTGAACCGCAT+GGG + Chr5:76783935-76783954 None:intergenic 55.0%
!! GACAGATTGACTCGGCCGTT+TGG + Chr5:76783209-76783228 None:intergenic 55.0%
ACTCGAACCGCTTACCCTCC+CGG + Chr5:76783102-76783121 None:intergenic 60.0%
GCGGTTCAACCAGTGACCCA+TGG - Chr5:76783937-76783956 MsG0580028219.01.T01:intron 60.0%
GTGCCGGGCCTCGTAATCTT+AGG - Chr5:76782463-76782482 MsG0580028219.01.T01:intron 60.0%
TAAGTACCAGGCTCGGCCCT+TGG - Chr5:76782420-76782439 MsG0580028219.01.T01:intron 60.0%
TGCAAGGTGAGCTACGGTGC+CGG - Chr5:76782447-76782466 MsG0580028219.01.T01:intron 60.0%
! GGGTCACTGGTTGAACCGCA+TGG + Chr5:76783936-76783955 None:intergenic 60.0%
!! AACTCGGCTCGGTCACGACT+CGG + Chr5:76783995-76784014 None:intergenic 60.0%
!! TCAAGGCGCTGTTGCTGCTG+AGG - Chr5:76781619-76781638 MsG0580028219.01.T01:intron 60.0%
AAAAACCGGACCGGACCGGC+CGG - Chr5:76783055-76783074 MsG0580028219.01.T01:intron 65.0%
CTCGGCCCTTGGCATGTGCA+AGG - Chr5:76782431-76782450 MsG0580028219.01.T01:intron 65.0%
CTTCTCACAGGGAGCCTCCC+TGG - Chr5:76784052-76784071 MsG0580028219.01.T01:intron 65.0%
GCAAGGTGAGCTACGGTGCC+GGG - Chr5:76782448-76782467 MsG0580028219.01.T01:intron 65.0%
TCGGGGCAAGGAGGACACCA+GGG + Chr5:76784072-76784091 None:intergenic 65.0%
! TCACGACTCGGCAGGTGCAC+TGG + Chr5:76783983-76784002 None:intergenic 65.0%
AACCGGTCGGACCGGGAACC+GGG - Chr5:76783081-76783100 MsG0580028219.01.T01:intron 70.0%
ACCGGACCGGCCGGTTGAAC+CGG - Chr5:76783064-76783083 MsG0580028219.01.T01:intron 70.0%
CACATGCCAAGGGCCGAGCC+TGG + Chr5:76782429-76782448 None:intergenic 70.0%
CCGCTTACCCTCCCGGTTCC+CGG + Chr5:76783095-76783114 None:intergenic 70.0%
CCGGGAACCGGGAGGGTAAG+CGG - Chr5:76783092-76783111 MsG0580028219.01.T01:intron 70.0%
CCGGTTGAACCGGTCGGACC+GGG - Chr5:76783074-76783093 MsG0580028219.01.T01:intron 70.0%
CTCGGGGCAAGGAGGACACC+AGG + Chr5:76784073-76784092 None:intergenic 70.0%
GAACCGGTCGGACCGGGAAC+CGG - Chr5:76783080-76783099 MsG0580028219.01.T01:intron 70.0%
GACCGGCCGGTTGAACCGGT+CGG - Chr5:76783068-76783087 MsG0580028219.01.T01:intron 70.0%
GCCGGTTGAACCGGTCGGAC+CGG - Chr5:76783073-76783092 MsG0580028219.01.T01:intron 70.0%
GGGCAAGGAGGACACCAGGG+AGG + Chr5:76784069-76784088 None:intergenic 70.0%
TTCAACCGGCCGGTCCGGTC+CGG + Chr5:76783063-76783082 None:intergenic 70.0%
! ACCGGTTCAACCGGCCGGTC+CGG + Chr5:76783068-76783087 None:intergenic 70.0%
! CCCGGTCCGACCGGTTCAAC+CGG + Chr5:76783077-76783096 None:intergenic 70.0%
! GTCCGACCGGTTCAACCGGC+CGG + Chr5:76783073-76783092 None:intergenic 70.0%
CTCCCGGTTCCCGGTCCGAC+CGG + Chr5:76783086-76783105 None:intergenic 75.0%
GGTCGGACCGGGAACCGGGA+GGG - Chr5:76783085-76783104 MsG0580028219.01.T01:intron 75.0%
!! CGGCTCGGTCACGACTCGGC+AGG + Chr5:76783991-76784010 None:intergenic 75.0%
! CGGTCGGACCGGGAACCGGG+AGG - Chr5:76783084-76783103 MsG0580028219.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 76781395 76785404 76781395 ID=MsG0580028219.01;Name=MsG0580028219.01
Chr5 mRNA 76781395 76785404 76781395 ID=MsG0580028219.01.T01;Parent=MsG0580028219.01;Name=MsG0580028219.01.T01;_AED=0.30;_eAED=0.32;_QI=0|0|0|1|1|1|4|0|187
Chr5 exon 76785159 76785404 76785159 ID=MsG0580028219.01.T01:exon:24091;Parent=MsG0580028219.01.T01
Chr5 exon 76784337 76784449 76784337 ID=MsG0580028219.01.T01:exon:24090;Parent=MsG0580028219.01.T01
Chr5 exon 76782642 76782737 76782642 ID=MsG0580028219.01.T01:exon:24089;Parent=MsG0580028219.01.T01
Chr5 exon 76781395 76781503 76781395 ID=MsG0580028219.01.T01:exon:24088;Parent=MsG0580028219.01.T01
Chr5 CDS 76785159 76785404 76785159 ID=MsG0580028219.01.T01:cds;Parent=MsG0580028219.01.T01
Chr5 CDS 76784337 76784449 76784337 ID=MsG0580028219.01.T01:cds;Parent=MsG0580028219.01.T01
Chr5 CDS 76782642 76782737 76782642 ID=MsG0580028219.01.T01:cds;Parent=MsG0580028219.01.T01
Chr5 CDS 76781395 76781503 76781395 ID=MsG0580028219.01.T01:cds;Parent=MsG0580028219.01.T01
Gene Sequence

>MsG0580028219.01.T01

ATGTTGAATGCAGTTACTATGTCCCAGCATAAAGCTCCTGCACTATGTGAAGATGATAAGTTGCTTGGTGATTTCAACATAGATGAGATGGATTTTGAACTTGAGAACTATACGGAACTTTTTGACTTTGCTCTCAACTACTCTGAAGAGTTTTTTGAAAATGGTGGTATTGATAGCTTATTTGAGAGAAAAGACATGTCTGCTAGTGCTGGTGATTCAAATTGTCAAGGCGCTGTTGCTGCTGAGGGGTCATCAGCAAGGTTTGTTAGTGCTATCCAACCAGAATGCAGCAATGCTGCATCTGCAGATTCAATATTAAGTACCAGGCTCGGCCCTTGGCATGTGCAAGGTGAGCTACGGGAGCCTCCCTGGTGTCCTCCTTGCCCCGAGAATTCTATTCAATCTGCTAATCGCAGCAATGCTGTCATGCATTATAAGGAAAGAAAAAATCGAAAGTTTGATAAGAAAGTAAGATATGCTTCTCAGAAGGCGAGGGCTGATGTCAGAAAACGCGTGAAAGGCCGTTCGTCAAAGCTGGGGAAACATACGATTACGACCCTTTGA
Protein sequence

>MsG0580028219.01.T01

MLNAVTMSQHKAPALCEDDKLLGDFNIDEMDFELENYTELFDFALNYSEEFFENGGIDSLFERKDMSASAGDSNCQGAVAAEGSSARFVSAIQPECSNAASADSILSTRLGPWHVQGELREPPWCPPCPENSIQSANRSNAVMHYKERKNRKFDKKVRYASQKARADVRKRVKGRSSKLGKHTITTL*