AlfalfaGEDB | MsG0580028437.01

M. sativa cultivar ZhongmuNo.1 / MsG0580028437.01

KEGG: -
GO: GO:0003677
PFAM: PF02362

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028437.01.T01	XP_024637264.1	83.962	106	17	0	1	106	60	165	1.67E-59	190

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028437.01.T01	G7JQ00	83.962	106	17	0	1	106	120	225	3.99e-59	190

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TFs/TRs:

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Gene ID	Type	Classification
MsG0580028437.01.T01	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028437.01.T01	MTR_4g123470	83.962	106	17	0	1	106	120	225	1.01e-62	190
MsG0580028437.01.T01	MTR_7g113060	84.211	38	6	0	68	105	3	40	1.47e-17	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 27 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGATGCTGCCACACTCA+TGG	0.481669	5:-80497482	None:intergenic
AATCGTGATGTTTCACTCTA+AGG	0.342040	5:-80497681	None:intergenic
ACAGGAATGATATTGTCATA+AGG	0.528831	5:-80497721	None:intergenic
ACCCTATCATTCCATGAGTG+TGG	0.630625	5:+80497471	None:intergenic
ACCTTTGAAGTTCCTATCGT+TGG	0.439777	5:+80497511	MsG0580028437.01.T01:CDS
AGGAATTTGCCAAAAGTATG+AGG	0.497368	5:-80497661	None:intergenic
ATCACGATTACCTAATGTTG+TGG	0.515574	5:+80497695	MsG0580028437.01.T01:CDS
ATGTGATGTTCGGAAAAGGT+TGG	0.606400	5:+80497776	MsG0580028437.01.T01:CDS
CACGATTACCTAATGTTGTG+GGG	0.648368	5:+80497697	MsG0580028437.01.T01:CDS
CATAAGGTCCCCACAACATT+AGG	0.363936	5:-80497705	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAGGAATGATATTGTCATA+AGG	-	Chr5:80497724-80497743	None:intergenic	30.0%
AATCGTGATGTTTCACTCTA+AGG	-	Chr5:80497684-80497703	None:intergenic	35.0%
ATCACGATTACCTAATGTTG+TGG	+	Chr5:80497695-80497714	MsG0580028437.01.T01:CDS	35.0%
TCACGATTACCTAATGTTGT+GGG	+	Chr5:80497696-80497715	MsG0580028437.01.T01:CDS	35.0%
TCTGTATATTTGAGTCTCAC+AGG	-	Chr5:80497742-80497761	None:intergenic	35.0%
ATGTGATGTTCGGAAAAGGT+TGG	+	Chr5:80497776-80497795	MsG0580028437.01.T01:CDS	40.0%
CACGATTACCTAATGTTGTG+GGG	+	Chr5:80497697-80497716	MsG0580028437.01.T01:CDS	40.0%
CCAAATGTGATGTTCGGAAA+AGG	+	Chr5:80497772-80497791	MsG0580028437.01.T01:CDS	40.0%
CCCATACCAAATGTGATGTT+CGG	+	Chr5:80497766-80497785	MsG0580028437.01.T01:CDS	40.0%
CCGAACATCACATTTGGTAT+GGG	-	Chr5:80497769-80497788	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	80497484	80497900	80497484	ID=MsG0580028437.01;Name=MsG0580028437.01
Chr5	mRNA	80497484	80497900	80497484	ID=MsG0580028437.01.T01;Parent=MsG0580028437.01;Name=MsG0580028437.01.T01;_AED=0.24;_eAED=0.24;_QI=0\|0\|0\|1\|0\|0\|2\|0\|106
Chr5	exon	80497484	80497558	80497484	ID=MsG0580028437.01.T01:exon:23789;Parent=MsG0580028437.01.T01
Chr5	exon	80497655	80497900	80497655	ID=MsG0580028437.01.T01:exon:23790;Parent=MsG0580028437.01.T01
Chr5	CDS	80497484	80497558	80497484	ID=MsG0580028437.01.T01:cds;Parent=MsG0580028437.01.T01
Chr5	CDS	80497655	80497900	80497655	ID=MsG0580028437.01.T01:cds;Parent=MsG0580028437.01.T01

Gene Sequence	>MsG0580028437.01.T01 ATGAGTGTGGCAGCATCGTTTTATTGTACCTTTGAAGTTCCTATCGTTGGATATGGATCGACGATATCACCGAAGGGACTACCTCATACTTTTGGCAAATTCCTTAGAGTGAAACATCACGATTACCTAATGTTGTGGGGACCTTATGACAATATCATTCCTGTGAGACTCAAATATACAGACGAACCCATACCAAATGTGATGTTCGGAAAAGGTTGGACGAGTTTTTGTGCTGCCAATGGTATTGAGGGCGGAGACGTGTTGATTTTCAAGTGCAAGTGCGTCATGGACGAAAAATATGTTATCGTATCCAAGCGTTAA
Protein sequence	>MsG0580028437.01.T01 MSVAASFYCTFEVPIVGYGSTISPKGLPHTFGKFLRVKHHDYLMLWGPYDNIIPVRLKYTDEPIPNVMFGKGWTSFCAANGIEGGDVLIFKCKCVMDEKYVIVSKR*