AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028698.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028698.01.T01 MTR_4g051638 80.556 144 20 1 37 172 92 235 4.15e-78 233
MsG0580028698.01.T01 MTR_7g050385 79.861 144 21 1 37 172 83 226 2.11e-77 231
MsG0580028698.01.T01 MTR_3g072200 77.143 140 29 1 33 172 21 157 6.97e-69 218
MsG0580028698.01.T01 MTR_3g437000 81.452 124 15 1 34 149 7 130 1.67e-68 204
MsG0580028698.01.T01 MTR_1g059880 66.443 149 28 2 34 174 59 193 1.32e-61 190
MsG0580028698.01.T01 MTR_3g015530 68.992 129 32 1 52 172 33 161 1.34e-60 188
MsG0580028698.01.T01 MTR_1g081740 63.399 153 12 3 34 172 22 144 7.07e-56 174
MsG0580028698.01.T01 MTR_2g026585 62.987 154 13 3 34 173 23 146 3.12e-55 179
MsG0580028698.01.T01 MTR_4g049670 66.429 140 24 2 34 173 17 133 1.88e-54 169
MsG0580028698.01.T01 MTR_2g451070 74.000 100 18 1 34 125 23 122 3.41e-46 147
MsG0580028698.01.T01 MTR_5g031650 51.389 144 61 3 33 172 55 193 1.44e-41 139
MsG0580028698.01.T01 MTR_2g067930 61.594 138 26 1 36 173 31 141 1.53e-40 135
MsG0580028698.01.T01 MTR_4g119600 53.285 137 59 2 40 172 36 171 2.21e-40 139
MsG0580028698.01.T01 MTR_5g071980 80.952 84 8 1 34 109 23 106 4.11e-40 137
MsG0580028698.01.T01 MTR_8g009330 49.020 153 66 4 30 172 42 192 8.11e-40 135
MsG0580028698.01.T01 MTR_6g075990 52.941 136 59 2 41 172 55 189 1.26e-39 135
MsG0580028698.01.T01 MTR_5g060540 52.381 147 37 3 34 172 8 129 5.09e-38 134
MsG0580028698.01.T01 MTR_4g057975 47.651 149 71 4 29 172 19 165 1.11e-35 123
MsG0580028698.01.T01 MTR_3g030230 82.857 70 12 0 103 172 69 138 1.33e-35 122
MsG0580028698.01.T01 MTR_3g462670 47.945 146 41 2 29 174 19 129 1.93e-35 123
MsG0580028698.01.T01 MTR_5g060510 54.422 147 34 3 32 169 36 158 3.41e-33 116
MsG0580028698.01.T01 MTR_8g107490 52.778 108 50 1 65 172 44 150 6.70e-33 119
MsG0580028698.01.T01 MTR_4g057300 73.529 68 18 0 105 172 1 68 8.54e-33 119
MsG0580028698.01.T01 MTR_6g084740 75.000 76 11 1 34 101 23 98 2.94e-32 113
MsG0580028698.01.T01 MTR_3g034840 43.066 137 69 3 38 172 52 181 6.18e-32 114
MsG0580028698.01.T01 MTR_0599s0020 43.066 137 69 3 38 172 52 181 6.18e-32 114
MsG0580028698.01.T01 MTR_3g077875 43.704 135 67 3 40 172 64 191 1.82e-31 115
MsG0580028698.01.T01 MTR_6g026910 53.846 117 17 2 34 150 23 102 2.64e-29 108
MsG0580028698.01.T01 MTR_6g090600 53.125 96 44 1 78 173 1 95 6.76e-29 103
MsG0580028698.01.T01 MTR_3g087440 45.185 135 65 3 40 172 64 191 1.57e-28 106
MsG0580028698.01.T01 MTR_6g089230 77.778 63 14 0 110 172 28 90 1.98e-28 105
MsG0580028698.01.T01 MTR_6g464570 45.378 119 58 4 59 172 13 129 9.58e-28 102
MsG0580028698.01.T01 MTR_8g038805 60.000 70 28 0 103 172 50 119 9.46e-27 99.0
MsG0580028698.01.T01 MTR_2g073060 53.535 99 37 2 37 127 70 167 4.42e-26 98.2
MsG0580028698.01.T01 MTR_3g067290 45.802 131 62 2 42 172 52 173 6.90e-26 99.0
MsG0580028698.01.T01 MTR_1g058140 40.876 137 34 2 36 172 52 141 6.11e-25 97.1
MsG0580028698.01.T01 MTR_6g037570 49.275 138 54 4 31 153 35 171 8.93e-25 97.1
MsG0580028698.01.T01 MTR_7g057800 50.459 109 33 4 29 118 19 125 5.02e-24 95.1
MsG0580028698.01.T01 MTR_7g057800 48.958 96 40 2 40 127 161 255 7.92e-21 86.7
MsG0580028698.01.T01 MTR_5g006100 42.748 131 68 4 44 172 42 167 7.20e-24 97.8
MsG0580028698.01.T01 MTR_5g079560 40.299 134 71 3 40 171 60 186 1.11e-23 93.6
MsG0580028698.01.T01 MTR_8g463940 47.015 134 57 6 19 139 36 168 3.83e-23 90.9
MsG0580028698.01.T01 MTR_5g046160 40.777 103 59 2 61 163 42 142 6.45e-23 92.0
MsG0580028698.01.T01 MTR_2g096070 48.544 103 47 3 65 165 83 181 1.34e-22 94.4
MsG0580028698.01.T01 MTR_0219s0080 50.000 112 42 5 29 131 19 125 2.59e-22 87.4
MsG0580028698.01.T01 MTR_7g106560 45.946 148 30 6 35 172 20 127 4.90e-22 88.6
MsG0580028698.01.T01 MTR_3g116710 37.719 114 67 2 60 170 78 190 8.08e-21 86.3
MsG0580028698.01.T01 MTR_7g064870 32.639 144 86 3 31 172 21 155 1.29e-20 84.3
MsG0580028698.01.T01 MTR_8g467980 54.286 70 31 1 66 135 76 144 1.34e-20 83.2
MsG0580028698.01.T01 MTR_3g045850 45.918 98 45 3 40 137 58 147 5.74e-20 81.6
MsG0580028698.01.T01 MTR_0340s0010 46.552 116 50 3 32 136 63 177 5.81e-20 82.4
MsG0580028698.01.T01 MTR_0341s0040 44.915 118 53 3 31 137 20 136 7.04e-20 81.3
MsG0580028698.01.T01 MTR_1g075420 46.939 98 44 3 40 137 25 114 8.67e-20 80.9
MsG0580028698.01.T01 MTR_8g445570 72.727 44 12 0 130 173 8 51 9.58e-20 80.1
MsG0580028698.01.T01 MTR_6g029530 37.607 117 65 2 60 169 498 613 1.95e-19 85.1
MsG0580028698.01.T01 MTR_5g070810 43.750 96 49 3 79 172 10 102 2.43e-19 79.3
MsG0580028698.01.T01 MTR_2g067720 52.222 90 38 2 37 122 28 116 4.34e-19 79.0
MsG0580028698.01.T01 MTR_8g103800 35.461 141 57 3 42 172 25 141 5.56e-19 82.0
MsG0580028698.01.T01 MTR_3g110070 48.515 101 40 3 31 120 20 119 1.57e-18 77.8
MsG0580028698.01.T01 MTR_6g019000 47.000 100 41 3 30 118 19 117 2.34e-18 76.6
MsG0580028698.01.T01 MTR_2g026605 44.248 113 48 4 30 131 19 127 2.48e-18 77.0
MsG0580028698.01.T01 MTR_1g099140 36.111 108 65 2 66 170 89 195 2.62e-18 81.6
MsG0580028698.01.T01 MTR_2g090505 35.088 114 70 2 60 170 83 195 3.30e-18 80.5
MsG0580028698.01.T01 MTR_2g030885 41.085 129 65 4 30 148 19 146 6.76e-18 80.5
MsG0580028698.01.T01 MTR_0116s0050 35.172 145 57 3 33 172 6 118 2.43e-17 75.5
MsG0580028698.01.T01 MTR_4g051612 49.474 95 37 4 38 122 43 136 1.77e-16 73.9
MsG0580028698.01.T01 MTR_1g012760 34.821 112 69 2 53 164 28 135 1.89e-16 75.1
MsG0580028698.01.T01 MTR_1g012760 34.821 112 69 2 53 164 39 146 2.07e-16 75.1
MsG0580028698.01.T01 MTR_5g015710 47.525 101 44 3 40 138 62 155 4.16e-16 73.2
MsG0580028698.01.T01 MTR_6g018990 35.862 145 50 4 30 163 19 131 5.59e-16 70.9
MsG0580028698.01.T01 MTR_1g075860 42.149 121 56 5 20 133 10 123 9.86e-16 70.1
MsG0580028698.01.T01 MTR_5g046145 36.190 105 60 2 66 170 125 222 1.18e-15 73.6
MsG0580028698.01.T01 MTR_1g088955 35.385 130 25 2 42 171 25 95 3.66e-15 69.3
MsG0580028698.01.T01 MTR_0156s0040 50.000 70 33 1 105 172 1 70 5.53e-15 69.7
MsG0580028698.01.T01 MTR_4g113170 83.784 37 6 0 136 172 72 108 8.23e-15 71.6
MsG0580028698.01.T01 MTR_8g095070 45.714 105 46 4 30 124 19 122 3.07e-14 68.9
MsG0580028698.01.T01 MTR_7g060350 36.842 152 64 6 31 172 20 149 4.41e-14 67.0
MsG0580028698.01.T01 MTR_3g434990 47.222 72 37 1 65 136 80 150 7.85e-14 65.9
MsG0580028698.01.T01 MTR_8g020433 56.604 53 23 0 120 172 70 122 8.91e-14 68.6
MsG0580028698.01.T01 MTR_5g098640 44.565 92 40 3 31 112 20 110 1.93e-13 65.5
MsG0580028698.01.T01 MTR_7g010970 47.692 65 32 1 110 172 6 70 2.36e-13 65.9
MsG0580028698.01.T01 MTR_7g065910 50.000 60 28 1 106 163 34 93 2.62e-13 67.0
MsG0580028698.01.T01 MTR_2g046540 40.385 104 59 2 21 124 47 147 3.30e-13 64.3
MsG0580028698.01.T01 MTR_8g059020 44.681 94 40 3 31 113 111 203 7.21e-13 65.1
MsG0580028698.01.T01 MTR_8g016360 31.008 129 84 3 45 170 2 128 6.86e-12 60.1
MsG0580028698.01.T01 MTR_1g080040 44.928 69 36 1 106 172 1 69 9.21e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 42 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAATTGGCCATTCTTAA+TGG 0.211843 5:-84918571 MsG0580028698.01.T01:CDS
AGCAAATAGGGCTGGATTTA+CGG 0.276740 5:-84918764 MsG0580028698.01.T01:CDS
AGTGGGAGCTTCAACCTTAA+TGG 0.288479 5:+84918912 None:intergenic
GGAAGACAATGCTTGGAAAT+TGG 0.294672 5:-84918584 MsG0580028698.01.T01:CDS
GTCGTCCTCCGTTAATCTTC+TGG 0.297489 5:+84918502 None:intergenic
AGATAATGTCGATTCCATTA+AGG 0.321813 5:-84918926 MsG0580028698.01.T01:CDS
GGGTCCGTCGACAAGCAAAT+AGG 0.324624 5:-84918777 MsG0580028698.01.T01:CDS
CTGGATTTACGGTTATCATT+AGG 0.337717 5:-84918753 MsG0580028698.01.T01:CDS
GCTTGAAGCCTCAACTTTAA+CGG 0.401956 5:+84918876 None:intergenic
TTTATCTTTCCATGTGTCTT+GGG 0.412580 5:+84918816 None:intergenic
AGGTGCGTGGATATGTCGTT+AGG 0.439715 5:-84918606 MsG0580028698.01.T01:CDS
AACGGAGACTTCGACCTTAG+TGG 0.455932 5:+84918894 None:intergenic
AAGAAATGCTATGTTGGAGT+TGG 0.470876 5:-84918716 MsG0580028698.01.T01:CDS
ACTTCTTGCCAGAAGATTAA+CGG 0.477368 5:-84918510 None:intergenic
GGTCCGTCGACAAGCAAATA+GGG 0.479832 5:-84918776 MsG0580028698.01.T01:CDS
AAAGTGAAGAATGAAACAAT+TGG 0.503254 5:-84918655 MsG0580028698.01.T01:CDS
ACGGAGACTTCGACCTTAGT+GGG 0.503833 5:+84918895 None:intergenic
GAGATGGTTCCGTATGTAGC+AGG 0.516640 5:-84918535 MsG0580028698.01.T01:CDS
CGTCGACAAGCAAATAGGGC+TGG 0.526515 5:-84918772 MsG0580028698.01.T01:CDS
AAAGTGTGGGTGTTTGTTCA+AGG 0.533208 5:-84918626 MsG0580028698.01.T01:CDS
GTTGTGAACGCCATTAAGAA+TGG 0.548117 5:+84918561 None:intergenic
TCGTTAGGGAAGACAATGCT+TGG 0.556018 5:-84918591 MsG0580028698.01.T01:CDS
GGTGCGTGGATATGTCGTTA+GGG 0.556776 5:-84918605 MsG0580028698.01.T01:CDS
CGTCAATTCCGATGTGGACA+CGG 0.557951 5:-84918854 MsG0580028698.01.T01:CDS
CGAAGTCTCCGTTAAAGTTG+AGG 0.568301 5:-84918884 MsG0580028698.01.T01:CDS
TGAAGGAAGAAATGCTATGT+TGG 0.568759 5:-84918722 MsG0580028698.01.T01:CDS
TAAGGTTGAAGCTCCCACTA+AGG 0.569014 5:-84918908 MsG0580028698.01.T01:CDS
AAGAAGTGGCCTGCTACATA+CGG 0.570820 5:+84918526 None:intergenic
TCGTTACATTGAAAAGATGC+CGG 0.574339 5:-84920533 MsG0580028698.01.T01:CDS
CAGCCCTATTTGCTTGTCGA+CGG 0.576051 5:+84918773 None:intergenic
TACAGTTCTTGATCGTGCAC+CGG 0.578448 5:+84920514 None:intergenic
CTACATACGGAACCATCTCA+TGG 0.590860 5:+84918539 None:intergenic
TGTTGGAGTTGGTTTGTGAA+CGG 0.593854 5:-84918705 MsG0580028698.01.T01:CDS
TGGCGTTCACAACCATGAGA+TGG 0.601420 5:-84918551 MsG0580028698.01.T01:CDS
GGGTGTTTGTTCAAGGTGCG+TGG 0.604884 5:-84918619 MsG0580028698.01.T01:CDS
ACAATTGGATCAAGAAAGTG+TGG 0.606195 5:-84918640 MsG0580028698.01.T01:CDS
GTTAATCTTCTGGCAAGAAG+TGG 0.621232 5:+84918512 None:intergenic
ATCATTAGGAGATCTTGTGA+AGG 0.645829 5:-84918739 MsG0580028698.01.T01:CDS
GAAATGAGCCGTGTCCACAT+CGG 0.661366 5:+84918846 None:intergenic
CAATTGGATCAAGAAAGTGT+GGG 0.689965 5:-84918639 MsG0580028698.01.T01:CDS
TTCAAGCGTCAATTCCGATG+TGG 0.715226 5:-84918860 MsG0580028698.01.T01:CDS
GAGTTGGTTTGTGAACGGAG+CGG 0.720933 5:-84918700 MsG0580028698.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAAAGAAAAAAAAAA+TGG + Chr5:84919980-84919999 None:intergenic 10.0%
!! AAACAAAAGAAAAAAAAAAT+GGG + Chr5:84919979-84919998 None:intergenic 10.0%
!! TAAAATAATTAAAACAAAAG+AGG - Chr5:84919328-84919347 MsG0580028698.01.T01:intron 10.0%
!! AAAAAATGGGAAAAAAAATT+TGG + Chr5:84919966-84919985 None:intergenic 15.0%
!! AAAAATGGGAAAAAAAATTT+GGG + Chr5:84919965-84919984 None:intergenic 15.0%
!! AATAGTGAAATTGAATAATA+AGG - Chr5:84919089-84919108 MsG0580028698.01.T01:intron 15.0%
!!! AAAATTGAAAATTTTCTAAG+TGG - Chr5:84919927-84919946 MsG0580028698.01.T01:intron 15.0%
!!! TATAATGATTTCTTTTACTT+TGG - Chr5:84918814-84918833 MsG0580028698.01.T01:CDS 15.0%
!!! TATTCTCATAATTTAAAGTT+CGG - Chr5:84919162-84919181 MsG0580028698.01.T01:intron 15.0%
!! AATTAAATGTATGACAATTC+AGG - Chr5:84919303-84919322 MsG0580028698.01.T01:intron 20.0%
!! ATCAATCAAAACGTAAATTT+GGG - Chr5:84919218-84919237 MsG0580028698.01.T01:intron 20.0%
!! ATTAAAACAAAAGAGGTAAA+AGG - Chr5:84919335-84919354 MsG0580028698.01.T01:intron 20.0%
!! ATTAAATGTATGACAATTCA+GGG - Chr5:84919304-84919323 MsG0580028698.01.T01:intron 20.0%
!! TAAAAGGAAAAAGGAAAATA+GGG - Chr5:84919351-84919370 MsG0580028698.01.T01:intron 20.0%
!! TGTTAACTGTTAAGTAAAAT+TGG - Chr5:84919185-84919204 MsG0580028698.01.T01:intron 20.0%
!!! GAAATGGGTTTTTTTTTTTT+GGG + Chr5:84919695-84919714 None:intergenic 20.0%
!!! GTGATAATTTTTGTTTTCTT+TGG - Chr5:84919116-84919135 MsG0580028698.01.T01:intron 20.0%
!!! TGGATAATTTTCAGTAATTA+AGG - Chr5:84918834-84918853 MsG0580028698.01.T01:CDS 20.0%
!!! TTATAGAACATCTTTTGTTA+TGG - Chr5:84918981-84919000 MsG0580028698.01.T01:intron 20.0%
! AAAAAGTTGCTTATTTGACA+AGG + Chr5:84920130-84920149 None:intergenic 25.0%
! AAAAGGAAAAAGGAAAATAG+GGG - Chr5:84919352-84919371 MsG0580028698.01.T01:intron 25.0%
! AAAGATAAAAACGAATTGCT+CGG - Chr5:84920288-84920307 MsG0580028698.01.T01:intron 25.0%
! AAAGTGAAGAATGAAACAAT+TGG - Chr5:84920435-84920454 MsG0580028698.01.T01:intron 25.0%
! AATCATTATAAAGCTCAAGA+AGG + Chr5:84918804-84918823 None:intergenic 25.0%
! CTATTCTTAGATGTAGTAAT+CGG + Chr5:84918712-84918731 None:intergenic 25.0%
! GAAAAATCAATCAAATGCAA+TGG + Chr5:84919821-84919840 None:intergenic 25.0%
! GACGTCTTATATATAAACTA+TGG - Chr5:84919051-84919070 MsG0580028698.01.T01:intron 25.0%
! GATCAATCAAAACGTAAATT+TGG - Chr5:84919217-84919236 MsG0580028698.01.T01:intron 25.0%
! GTAAAAGGAAAAAGGAAAAT+AGG - Chr5:84919350-84919369 MsG0580028698.01.T01:intron 25.0%
! TATGAAATTTCATAGTCTAC+TGG - Chr5:84918923-84918942 MsG0580028698.01.T01:CDS 25.0%
! TTAAATGTATGACAATTCAG+GGG - Chr5:84919305-84919324 MsG0580028698.01.T01:intron 25.0%
! TTGACACAAAAATTGGAAAT+GGG + Chr5:84919710-84919729 None:intergenic 25.0%
! TTTGACACAAAAATTGGAAA+TGG + Chr5:84919711-84919730 None:intergenic 25.0%
!!! CATGATTTTGACACAAAAAT+TGG + Chr5:84919717-84919736 None:intergenic 25.0%
!!! GGAAATGGGTTTTTTTTTTT+TGG + Chr5:84919696-84919715 None:intergenic 25.0%
!!! TTGCATTTGATTGATTTTTC+TGG - Chr5:84919821-84919840 MsG0580028698.01.T01:intron 25.0%
!!! TTTTTTTTTGGGTATGGTAT+AGG + Chr5:84919684-84919703 None:intergenic 25.0%
AAAGGAAAAAGGAAAATAGG+GGG - Chr5:84919353-84919372 MsG0580028698.01.T01:intron 30.0%
AATGAGTATGGCTAAAATAC+AGG + Chr5:84919442-84919461 None:intergenic 30.0%
ATTTCATAGTCTACTGGTAT+AGG - Chr5:84918929-84918948 MsG0580028698.01.T01:intron 30.0%
CAAAAGAGGTAAAAGGAAAA+AGG - Chr5:84919342-84919361 MsG0580028698.01.T01:intron 30.0%
CTTTCAAACTTGAATGAGTA+TGG + Chr5:84919454-84919473 None:intergenic 30.0%
TTTAACCAGAACTTATTAGC+CGG - Chr5:84919259-84919278 MsG0580028698.01.T01:intron 30.0%
TTTATCTTTCCATGTGTCTT+GGG + Chr5:84920277-84920296 None:intergenic 30.0%
! TTTTATCTTTCCATGTGTCT+TGG + Chr5:84920278-84920297 None:intergenic 30.0%
!! AGATAATGTCGATTCCATTA+AGG - Chr5:84920164-84920183 MsG0580028698.01.T01:intron 30.0%
!! TCATTCTTCACTTTTGTCTT+CGG + Chr5:84920429-84920448 None:intergenic 30.0%
!!! GGGTTTTTTTTTTTTGGGTA+TGG + Chr5:84919690-84919709 None:intergenic 30.0%
!!! TGAAAGTTGCTTTTTTGACA+AGG - Chr5:84919468-84919487 MsG0580028698.01.T01:intron 30.0%
AACAAGTGAATGAACTCAAC+CGG + Chr5:84919281-84919300 None:intergenic 35.0%
AAGAAATGCTATGTTGGAGT+TGG - Chr5:84920374-84920393 MsG0580028698.01.T01:intron 35.0%
ACAATTGGATCAAGAAAGTG+TGG - Chr5:84920450-84920469 MsG0580028698.01.T01:intron 35.0%
ACTGTAATGTAGTGGTATAC+CGG + Chr5:84918607-84918626 None:intergenic 35.0%
AGTATGGCTAAAATACAGGA+TGG + Chr5:84919438-84919457 None:intergenic 35.0%
AGTCATTTCCATGTGTCAAT+TGG + Chr5:84919501-84919520 None:intergenic 35.0%
ATAAAAACGAATTGCTCGGT+TGG - Chr5:84920292-84920311 MsG0580028698.01.T01:intron 35.0%
ATCATTAGGAGATCTTGTGA+AGG - Chr5:84920351-84920370 MsG0580028698.01.T01:intron 35.0%
CTGGATTTACGGTTATCATT+AGG - Chr5:84920337-84920356 MsG0580028698.01.T01:intron 35.0%
GAATACTTCCAATTGACACA+TGG - Chr5:84919490-84919509 MsG0580028698.01.T01:intron 35.0%
GGTTAAAACGAATCGTCAAA+GGG + Chr5:84919246-84919265 None:intergenic 35.0%
GTATACCACTACATTACAGT+CGG - Chr5:84918607-84918626 MsG0580028698.01.T01:CDS 35.0%
TAAAAACGAATTGCTCGGTT+GGG - Chr5:84920293-84920312 MsG0580028698.01.T01:intron 35.0%
TCGTTACATTGAAAAGATGC+CGG - Chr5:84918557-84918576 MsG0580028698.01.T01:CDS 35.0%
TGAAGGAAGAAATGCTATGT+TGG - Chr5:84920368-84920387 MsG0580028698.01.T01:intron 35.0%
TGGAAATTGGCCATTCTTAA+TGG - Chr5:84920519-84920538 MsG0580028698.01.T01:CDS 35.0%
TGGTTAAAACGAATCGTCAA+AGG + Chr5:84919247-84919266 None:intergenic 35.0%
TTTGTCTTGTATGCTGTAAC+TGG + Chr5:84918640-84918659 None:intergenic 35.0%
! ATGGTAGCTAATGTTAGTCT+TGG - Chr5:84919000-84919019 MsG0580028698.01.T01:intron 35.0%
! CAATTGGATCAAGAAAGTGT+GGG - Chr5:84920451-84920470 MsG0580028698.01.T01:intron 35.0%
! GATCAAGAACTGTACTTTTC+CGG - Chr5:84918585-84918604 MsG0580028698.01.T01:CDS 35.0%
! TCAATTTTCTAAGTCCCCAA+CGG + Chr5:84919915-84919934 None:intergenic 35.0%
!! ATAGGGGGAAAAGTATTTGA+AGG - Chr5:84919368-84919387 MsG0580028698.01.T01:intron 35.0%
!! TAGGGGGAAAAGTATTTGAA+GGG - Chr5:84919369-84919388 MsG0580028698.01.T01:intron 35.0%
!! TAGTCTTGGTCTATTTTCGA+TGG - Chr5:84919014-84919033 MsG0580028698.01.T01:intron 35.0%
!! TTTTGGGTATGGTATAGGAA+TGG + Chr5:84919679-84919698 None:intergenic 35.0%
AAAGTGTGGGTGTTTGTTCA+AGG - Chr5:84920464-84920483 MsG0580028698.01.T01:intron 40.0%
AGCAAATAGGGCTGGATTTA+CGG - Chr5:84920326-84920345 MsG0580028698.01.T01:intron 40.0%
ATGAGTGAATAGGTGAGGTA+GGG + Chr5:84919638-84919657 None:intergenic 40.0%
GAGAAAGGTGATGAGTGAAT+AGG + Chr5:84919648-84919667 None:intergenic 40.0%
GCAATCGATCAGCAATGATT+TGG + Chr5:84919743-84919762 None:intergenic 40.0%
GCTTGAAGCCTCAACTTTAA+CGG + Chr5:84920217-84920236 None:intergenic 40.0%
GGAAGACAATGCTTGGAAAT+TGG - Chr5:84920506-84920525 MsG0580028698.01.T01:CDS 40.0%
GGAATGGAATGGAATGAGAA+AGG + Chr5:84919663-84919682 None:intergenic 40.0%
GGTATGGTATAGGAATGGAA+TGG + Chr5:84919674-84919693 None:intergenic 40.0%
GTGTTATCTCTCTGATGAGA+AGG - Chr5:84919138-84919157 MsG0580028698.01.T01:intron 40.0%
GTTGTGAACGCCATTAAGAA+TGG + Chr5:84920532-84920551 None:intergenic 40.0%
TTAGATGTAGTAATCGGCGA+TGG + Chr5:84918706-84918725 None:intergenic 40.0%
TTGTATGCTGTAACTGGCAA+GGG + Chr5:84918634-84918653 None:intergenic 40.0%
! TCTTTTCAACCCAAGACACA+TGG - Chr5:84920265-84920284 MsG0580028698.01.T01:intron 40.0%
!! AATACAGGATGGACTGGAAA+TGG + Chr5:84919427-84919446 None:intergenic 40.0%
!! ATACAGGATGGACTGGAAAT+GGG + Chr5:84919426-84919445 None:intergenic 40.0%
!! TGACCTCATTTTTCGTGTCA+TGG - Chr5:84918668-84918687 MsG0580028698.01.T01:CDS 40.0%
!! TGTTGGAGTTGGTTTGTGAA+CGG - Chr5:84920385-84920404 MsG0580028698.01.T01:intron 40.0%
AAGAAGTGGCCTGCTACATA+CGG + Chr5:84920567-84920586 None:intergenic 45.0%
AGGTGATGAGTGAATAGGTG+AGG + Chr5:84919643-84919662 None:intergenic 45.0%
AGTGGGAGCTTCAACCTTAA+TGG + Chr5:84920181-84920200 None:intergenic 45.0%
CGAAGTCTCCGTTAAAGTTG+AGG - Chr5:84920206-84920225 MsG0580028698.01.T01:intron 45.0%
CTACATACGGAACCATCTCA+TGG + Chr5:84920554-84920573 None:intergenic 45.0%
CTCAACCGGCTAATAAGTTC+TGG + Chr5:84919267-84919286 None:intergenic 45.0%
CTTGTATGCTGTAACTGGCA+AGG + Chr5:84918635-84918654 None:intergenic 45.0%
GATGAGTGAATAGGTGAGGT+AGG + Chr5:84919639-84919658 None:intergenic 45.0%
GGCTAAAATACAGGATGGAC+TGG + Chr5:84919433-84919452 None:intergenic 45.0%
TAAGGTTGAAGCTCCCACTA+AGG - Chr5:84920182-84920201 MsG0580028698.01.T01:intron 45.0%
TACAGTTCTTGATCGTGCAC+CGG + Chr5:84918579-84918598 None:intergenic 45.0%
TCGTTAGGGAAGACAATGCT+TGG - Chr5:84920499-84920518 MsG0580028698.01.T01:intron 45.0%
TGAGTGAATAGGTGAGGTAG+GGG + Chr5:84919637-84919656 None:intergenic 45.0%
TTCAAGCGTCAATTCCGATG+TGG - Chr5:84920230-84920249 MsG0580028698.01.T01:intron 45.0%
!! AATGACTTTAAAGCCCCTGG+CGG - Chr5:84919514-84919533 MsG0580028698.01.T01:intron 45.0%
!! CCTCATTTTTCGTGTCATGG+CGG - Chr5:84918671-84918690 MsG0580028698.01.T01:CDS 45.0%
!! GGAAATGACTTTAAAGCCCC+TGG - Chr5:84919511-84919530 MsG0580028698.01.T01:intron 45.0%
!! TGGACTGGAAATGGGTTGAA+CGG + Chr5:84919418-84919437 None:intergenic 45.0%
!!! TAGGGGTTTCTGGTTTTGGT+GGG + Chr5:84919620-84919639 None:intergenic 45.0%
!!! TTTTTTGTTTTTTTTTTTTA+AGG - Chr5:84918893-84918912 MsG0580028698.01.T01:CDS 5.0%
AACGGAGACTTCGACCTTAG+TGG + Chr5:84920199-84920218 None:intergenic 50.0%
ACGGAGACTTCGACCTTAGT+GGG + Chr5:84920198-84920217 None:intergenic 50.0%
AGCGGCAGTTAACTACTGCT+GGG - Chr5:84919870-84919889 MsG0580028698.01.T01:intron 50.0%
AGCGGTAGTTAACAACCGCT+GGG + Chr5:84919588-84919607 None:intergenic 50.0%
AGGGTCCGACTGTAATGTAG+TGG + Chr5:84918615-84918634 None:intergenic 50.0%
AGGTGCGTGGATATGTCGTT+AGG - Chr5:84920484-84920503 MsG0580028698.01.T01:intron 50.0%
ATAGGTGAGGTAGGGGTTTC+TGG + Chr5:84919630-84919649 None:intergenic 50.0%
CAGCCCTATTTGCTTGTCGA+CGG + Chr5:84920320-84920339 None:intergenic 50.0%
CCGCCATGACACGAAAAATG+AGG + Chr5:84918674-84918693 None:intergenic 50.0%
CGTCAATTCCGATGTGGACA+CGG - Chr5:84920236-84920255 MsG0580028698.01.T01:intron 50.0%
GAAATGAGCCGTGTCCACAT+CGG + Chr5:84920247-84920266 None:intergenic 50.0%
GAGATGGTTCCGTATGTAGC+AGG - Chr5:84920555-84920574 MsG0580028698.01.T01:CDS 50.0%
GGTCCGTCGACAAGCAAATA+GGG - Chr5:84920314-84920333 MsG0580028698.01.T01:intron 50.0%
GGTGCGTGGATATGTCGTTA+GGG - Chr5:84920485-84920504 MsG0580028698.01.T01:intron 50.0%
TAACTACTGCTGGGAGTGAG+CGG - Chr5:84919879-84919898 MsG0580028698.01.T01:intron 50.0%
TAGCGGCAGTTAACTACTGC+TGG - Chr5:84919869-84919888 MsG0580028698.01.T01:intron 50.0%
TCCCAACGACAGTTAACAGC+CGG + Chr5:84919565-84919584 None:intergenic 50.0%
TGGCGTTCACAACCATGAGA+TGG - Chr5:84920539-84920558 MsG0580028698.01.T01:CDS 50.0%
TGTTCTGACACGCGTTGTAG+CGG - Chr5:84919852-84919871 MsG0580028698.01.T01:intron 50.0%
TTTGGTGGGAAAGACACCAG+CGG + Chr5:84919606-84919625 None:intergenic 50.0%
!! GAGTTGGTTTGTGAACGGAG+CGG - Chr5:84920390-84920409 MsG0580028698.01.T01:intron 50.0%
!! GGACTGGAAATGGGTTGAAC+GGG + Chr5:84919417-84919436 None:intergenic 50.0%
!!! GAGGTAGGGGTTTCTGGTTT+TGG + Chr5:84919624-84919643 None:intergenic 50.0%
!!! GTAGGGGTTTCTGGTTTTGG+TGG + Chr5:84919621-84919640 None:intergenic 50.0%
ACTACCGCTGGATGATACGC+CGG - Chr5:84919543-84919562 MsG0580028698.01.T01:intron 55.0%
AGCGGCTGTTAACTGCCGTT+GGG - Chr5:84919897-84919916 MsG0580028698.01.T01:intron 55.0%
AGCGGTAGTTAACTACCGCC+AGG + Chr5:84919532-84919551 None:intergenic 55.0%
CAGCGGTAGTTAACAACCGC+TGG + Chr5:84919589-84919608 None:intergenic 55.0%
CAGCGGTTGTTAACTACCGC+TGG - Chr5:84919587-84919606 MsG0580028698.01.T01:intron 55.0%
CGGTAGTTAACTACCGCCAG+GGG + Chr5:84919530-84919549 None:intergenic 55.0%
CGTCGACAAGCAAATAGGGC+TGG - Chr5:84920318-84920337 MsG0580028698.01.T01:intron 55.0%
GCCGGCTGTTAACTGTCGTT+GGG - Chr5:84919561-84919580 MsG0580028698.01.T01:intron 55.0%
GCGGTAGTTAACTACCGCCA+GGG + Chr5:84919531-84919550 None:intergenic 55.0%
GGGTCCGTCGACAAGCAAAT+AGG - Chr5:84920313-84920332 MsG0580028698.01.T01:intron 55.0%
GGGTGTTTGTTCAAGGTGCG+TGG - Chr5:84920471-84920490 MsG0580028698.01.T01:intron 55.0%
TAACTGTCGTTGGGACCCAG+CGG - Chr5:84919570-84919589 MsG0580028698.01.T01:intron 55.0%
TGGCGGTAGTTAACTACCGC+TGG - Chr5:84919531-84919550 MsG0580028698.01.T01:intron 55.0%
ACAGCCGGCGTATCATCCAG+CGG + Chr5:84919550-84919569 None:intergenic 60.0%
GAGCGGCTGTTAACTGCCGT+TGG - Chr5:84919896-84919915 MsG0580028698.01.T01:intron 60.0%
GCGGCTGTTAACTGCCGTTG+GGG - Chr5:84919898-84919917 MsG0580028698.01.T01:intron 60.0%
! CGCCGGCTGTTAACTGTCGT+TGG - Chr5:84919560-84919579 MsG0580028698.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 84918513 84920599 84918513 ID=MsG0580028698.01;Name=MsG0580028698.01
Chr5 mRNA 84918513 84920599 84918513 ID=MsG0580028698.01.T01;Parent=MsG0580028698.01;Name=MsG0580028698.01.T01;_AED=0.53;_eAED=0.53;_QI=0|0|0|1|1|1|2|0|175
Chr5 exon 84920506 84920599 84920506 ID=MsG0580028698.01.T01:exon:24206;Parent=MsG0580028698.01.T01
Chr5 exon 84918513 84918946 84918513 ID=MsG0580028698.01.T01:exon:24205;Parent=MsG0580028698.01.T01
Chr5 CDS 84920506 84920599 84920506 ID=MsG0580028698.01.T01:cds;Parent=MsG0580028698.01.T01
Chr5 CDS 84918513 84918946 84918513 ID=MsG0580028698.01.T01:cds;Parent=MsG0580028698.01.T01
Gene Sequence

>MsG0580028698.01.T01

ATGGTTAATAGTTCAGACACGATACTCAGCGTTCAAAAGAAGATTCGTTACATTGAAAAGATGCCGGTGCACGATCAAGAACTGTACTTTTCCGATAATGTCGATTCCATTAAGGTTGAAGCTCCCACTAAGGTCGAAGTCTCCGTTAAAGTTGAGGCTTCAAGCGTCAATTCCGATGTGGACACGGCTCATTTCTTTTCAACCCAAGACACATGGAAAGATAAAAACGAATTGCTCGGTTGGGTCCGTCGACAAGCAAATAGGGCTGGATTTACGGTTATCATTAGGAGATCTTGTGAAGGAAGAAATGCTATGTTGGAGTTGGTTTGTGAACGGAGCGGCGAGCACAAAGTACCGAAGACAAAAGTGAAGAATGAAACAATTGGATCAAGAAAGTGTGGGTGTTTGTTCAAGGTGCGTGGATATGTCGTTAGGGAAGACAATGCTTGGAAATTGGCCATTCTTAATGGCGTTCACAACCATGAGATGGTTCCGTATGTAGCAGGCCACTTCTTGCCAGAAGATTAA
Protein sequence

>MsG0580028698.01.T01

MVNSSDTILSVQKKIRYIEKMPVHDQELYFSDNVDSIKVEAPTKVEVSVKVEASSVNSDVDTAHFFSTQDTWKDKNELLGWVRRQANRAGFTVIIRRSCEGRNAMLELVCERSGEHKVPKTKVKNETIGSRKCGCLFKVRGYVVREDNAWKLAILNGVHNHEMVPYVAGHFLPED*