Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029034.01.T01 | XP_003616452.1 | 96.354 | 192 | 6 | 1 | 20 | 210 | 1 | 192 | 1.57E-134 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029034.01.T01 | Q9LHS8 | 51.596 | 188 | 72 | 4 | 20 | 205 | 1 | 171 | 1.18E-57 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029034.01.T01 | G7KGT3 | 96.354 | 192 | 6 | 1 | 20 | 210 | 1 | 192 | 7.50e-135 | 385 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580029034.01.T01 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029034.01.T01 | MTR_5g080470 | 96.354 | 192 | 6 | 1 | 20 | 210 | 1 | 192 | 1.90e-138 | 385 |
| MsG0580029034.01.T01 | MTR_7g096610 | 62.500 | 120 | 45 | 0 | 20 | 139 | 2 | 121 | 3.10e-52 | 168 |
| MsG0580029034.01.T01 | MTR_1g070205 | 72.165 | 97 | 27 | 0 | 27 | 123 | 13 | 109 | 2.68e-49 | 160 |
| MsG0580029034.01.T01 | MTR_7g096530 | 64.000 | 100 | 36 | 0 | 21 | 120 | 9 | 108 | 2.14e-45 | 150 |
| MsG0580029034.01.T01 | MTR_6g027710 | 53.782 | 119 | 55 | 0 | 25 | 143 | 39 | 157 | 2.40e-44 | 148 |
| MsG0580029034.01.T01 | MTR_8g036105 | 59.434 | 106 | 43 | 0 | 24 | 129 | 16 | 121 | 1.18e-43 | 145 |
| MsG0580029034.01.T01 | MTR_8g036085 | 62.264 | 106 | 40 | 0 | 27 | 132 | 24 | 129 | 1.28e-43 | 146 |
| MsG0580029034.01.T01 | MTR_1g070220 | 48.611 | 144 | 61 | 2 | 24 | 167 | 13 | 143 | 4.58e-42 | 141 |
| MsG0580029034.01.T01 | MTR_7g074990 | 64.646 | 99 | 35 | 0 | 27 | 125 | 21 | 119 | 1.65e-41 | 140 |
| MsG0580029034.01.T01 | MTR_7g075230 | 41.053 | 190 | 92 | 5 | 24 | 196 | 10 | 196 | 2.16e-39 | 134 |
| MsG0580029034.01.T01 | MTR_7g033800 | 55.670 | 97 | 42 | 1 | 25 | 121 | 10 | 105 | 1.12e-33 | 119 |
| MsG0580029034.01.T01 | MTR_3g071590 | 54.082 | 98 | 44 | 1 | 25 | 122 | 7 | 103 | 3.59e-33 | 117 |
| MsG0580029034.01.T01 | MTR_5g083230 | 38.824 | 170 | 77 | 4 | 22 | 186 | 2 | 149 | 4.16e-33 | 117 |
| MsG0580029034.01.T01 | MTR_6g027700 | 37.356 | 174 | 90 | 2 | 20 | 191 | 1 | 157 | 1.42e-32 | 117 |
| MsG0580029034.01.T01 | MTR_4g105170 | 47.368 | 114 | 59 | 1 | 23 | 136 | 8 | 120 | 1.95e-32 | 116 |
| MsG0580029034.01.T01 | MTR_4g083680 | 50.000 | 104 | 51 | 1 | 19 | 122 | 8 | 110 | 4.95e-32 | 114 |
| MsG0580029034.01.T01 | MTR_3g031660 | 47.934 | 121 | 56 | 3 | 22 | 136 | 2 | 121 | 6.45e-32 | 114 |
| MsG0580029034.01.T01 | MTR_6g005070 | 52.577 | 97 | 45 | 1 | 25 | 121 | 8 | 103 | 1.12e-31 | 112 |
| MsG0580029034.01.T01 | MTR_3g077240 | 51.485 | 101 | 48 | 1 | 21 | 121 | 5 | 104 | 1.21e-31 | 114 |
| MsG0580029034.01.T01 | MTR_2g068760 | 51.961 | 102 | 48 | 1 | 19 | 120 | 6 | 106 | 1.72e-31 | 112 |
| MsG0580029034.01.T01 | MTR_6g005080 | 51.546 | 97 | 46 | 1 | 25 | 121 | 9 | 104 | 3.38e-30 | 108 |
| MsG0580029034.01.T01 | MTR_3g094690 | 51.515 | 99 | 47 | 1 | 25 | 123 | 46 | 143 | 3.84e-30 | 111 |
| MsG0580029034.01.T01 | MTR_5g083960 | 50.505 | 99 | 48 | 1 | 25 | 123 | 38 | 135 | 4.01e-30 | 110 |
| MsG0580029034.01.T01 | MTR_5g083010 | 44.340 | 106 | 58 | 1 | 24 | 129 | 9 | 113 | 6.13e-30 | 109 |
| MsG0580029034.01.T01 | MTR_5g017950 | 52.577 | 97 | 45 | 1 | 25 | 121 | 7 | 102 | 6.48e-30 | 113 |
| MsG0580029034.01.T01 | MTR_3g073690 | 46.667 | 105 | 55 | 1 | 24 | 128 | 7 | 110 | 7.09e-30 | 110 |
| MsG0580029034.01.T01 | MTR_3g071420 | 47.475 | 99 | 51 | 1 | 24 | 122 | 12 | 109 | 1.37e-29 | 108 |
| MsG0580029034.01.T01 | MTR_3g452660 | 36.686 | 169 | 89 | 5 | 20 | 179 | 1 | 160 | 1.58e-29 | 111 |
| MsG0580029034.01.T01 | MTR_3g094690 | 51.515 | 99 | 46 | 2 | 25 | 123 | 46 | 142 | 2.09e-28 | 107 |
| MsG0580029034.01.T01 | MTR_2g093310 | 47.917 | 96 | 49 | 1 | 25 | 120 | 32 | 126 | 2.46e-27 | 103 |
| MsG0580029034.01.T01 | MTR_4g060950 | 46.018 | 113 | 52 | 3 | 25 | 136 | 23 | 127 | 4.89e-27 | 102 |
| MsG0580029034.01.T01 | MTR_5g075020 | 53.659 | 82 | 37 | 1 | 25 | 106 | 42 | 122 | 2.81e-25 | 99.0 |
| MsG0580029034.01.T01 | MTR_5g075020 | 53.659 | 82 | 37 | 1 | 25 | 106 | 46 | 126 | 3.23e-25 | 99.0 |
| MsG0580029034.01.T01 | MTR_1g095850 | 46.809 | 94 | 49 | 1 | 27 | 120 | 73 | 165 | 6.68e-25 | 97.8 |
| MsG0580029034.01.T01 | MTR_8g040900 | 50.575 | 87 | 42 | 1 | 20 | 106 | 1 | 86 | 1.71e-24 | 96.7 |
| MsG0580029034.01.T01 | MTR_7g028905 | 42.308 | 104 | 59 | 1 | 25 | 128 | 4 | 106 | 1.12e-23 | 91.7 |
| MsG0580029034.01.T01 | MTR_5g093010 | 42.157 | 102 | 58 | 1 | 27 | 128 | 6 | 106 | 2.00e-23 | 91.7 |
| MsG0580029034.01.T01 | MTR_4g107450 | 38.384 | 99 | 60 | 1 | 22 | 120 | 6 | 103 | 6.92e-19 | 83.2 |
| MsG0580029034.01.T01 | MTR_8g017090 | 35.922 | 103 | 65 | 1 | 26 | 128 | 12 | 113 | 7.95e-19 | 83.2 |
| MsG0580029034.01.T01 | MTR_6g011250 | 35.922 | 103 | 64 | 2 | 27 | 128 | 10 | 111 | 3.69e-17 | 76.3 |
| MsG0580029034.01.T01 | MTR_8g079660 | 37.255 | 102 | 63 | 1 | 27 | 128 | 9 | 109 | 3.83e-17 | 77.8 |
| MsG0580029034.01.T01 | MTR_8g079620 | 38.235 | 102 | 62 | 1 | 27 | 128 | 9 | 109 | 1.56e-16 | 75.9 |
| MsG0580029034.01.T01 | MTR_6g011230 | 39.506 | 81 | 48 | 1 | 26 | 106 | 11 | 90 | 6.69e-16 | 73.6 |
| MsG0580029034.01.T01 | MTR_2g100020 | 32.323 | 99 | 66 | 1 | 22 | 120 | 15 | 112 | 1.21e-15 | 73.9 |
| MsG0580029034.01.T01 | MTR_6g011200 | 32.692 | 104 | 68 | 2 | 26 | 128 | 9 | 111 | 1.81e-15 | 73.2 |
| MsG0580029034.01.T01 | MTR_5g085390 | 33.654 | 104 | 67 | 2 | 26 | 128 | 9 | 111 | 4.76e-14 | 68.9 |
| MsG0580029034.01.T01 | MTR_8g079580 | 35.789 | 95 | 59 | 2 | 27 | 120 | 9 | 102 | 2.15e-13 | 67.0 |
| MsG0580029034.01.T01 | MTR_4g099230 | 30.097 | 103 | 70 | 2 | 27 | 128 | 3 | 104 | 1.04e-12 | 63.9 |
| MsG0580029034.01.T01 | MTR_4g088035 | 31.111 | 90 | 61 | 1 | 25 | 114 | 5 | 93 | 1.07e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029034.01.T01 | AT5G06080 | 51.596 | 188 | 72 | 4 | 20 | 205 | 1 | 171 | 1.21e-58 | 182 |
| MsG0580029034.01.T01 | AT3G58190 | 68.868 | 106 | 33 | 0 | 27 | 132 | 12 | 117 | 1.29e-50 | 164 |
| MsG0580029034.01.T01 | AT2G42440 | 60.656 | 122 | 43 | 1 | 20 | 136 | 1 | 122 | 1.49e-49 | 162 |
| MsG0580029034.01.T01 | AT2G42430 | 45.304 | 181 | 76 | 3 | 22 | 185 | 11 | 185 | 5.39e-47 | 155 |
| MsG0580029034.01.T01 | AT3G03760 | 60.714 | 112 | 44 | 0 | 25 | 136 | 50 | 161 | 4.12e-46 | 154 |
| MsG0580029034.01.T01 | AT4G00210 | 64.000 | 100 | 36 | 0 | 21 | 120 | 6 | 105 | 4.62e-46 | 152 |
| MsG0580029034.01.T01 | AT2G31310 | 62.500 | 104 | 39 | 0 | 20 | 123 | 1 | 104 | 8.35e-45 | 148 |
| MsG0580029034.01.T01 | AT2G45420 | 64.356 | 101 | 36 | 0 | 29 | 129 | 40 | 140 | 6.95e-43 | 145 |
| MsG0580029034.01.T01 | AT4G00220 | 60.396 | 101 | 40 | 0 | 29 | 129 | 20 | 120 | 9.13e-41 | 139 |
| MsG0580029034.01.T01 | AT2G45410 | 59.783 | 92 | 37 | 0 | 29 | 120 | 19 | 110 | 6.20e-38 | 130 |
| MsG0580029034.01.T01 | AT3G27650 | 55.670 | 97 | 42 | 1 | 25 | 121 | 38 | 133 | 4.99e-34 | 119 |
| MsG0580029034.01.T01 | AT5G63090 | 48.276 | 116 | 59 | 1 | 23 | 138 | 8 | 122 | 6.74e-33 | 117 |
| MsG0580029034.01.T01 | AT5G63090 | 48.276 | 116 | 59 | 1 | 23 | 138 | 8 | 122 | 6.74e-33 | 117 |
| MsG0580029034.01.T01 | AT5G63090 | 48.276 | 116 | 59 | 1 | 23 | 138 | 8 | 122 | 6.74e-33 | 117 |
| MsG0580029034.01.T01 | AT5G63090 | 48.276 | 116 | 59 | 1 | 23 | 138 | 8 | 122 | 6.74e-33 | 117 |
| MsG0580029034.01.T01 | AT2G30130 | 51.923 | 104 | 48 | 2 | 20 | 122 | 1 | 103 | 4.84e-32 | 115 |
| MsG0580029034.01.T01 | AT1G31320 | 51.579 | 95 | 45 | 1 | 19 | 113 | 6 | 99 | 6.21e-31 | 112 |
| MsG0580029034.01.T01 | AT5G66870 | 50.000 | 102 | 50 | 1 | 20 | 121 | 1 | 101 | 2.23e-29 | 111 |
| MsG0580029034.01.T01 | AT2G28500 | 45.133 | 113 | 56 | 2 | 25 | 132 | 54 | 165 | 4.05e-29 | 108 |
| MsG0580029034.01.T01 | AT2G30340 | 51.515 | 99 | 47 | 1 | 25 | 123 | 52 | 149 | 4.83e-29 | 109 |
| MsG0580029034.01.T01 | AT2G30340 | 51.515 | 99 | 47 | 1 | 25 | 123 | 51 | 148 | 5.26e-29 | 109 |
| MsG0580029034.01.T01 | AT1G07900 | 45.536 | 112 | 53 | 2 | 25 | 136 | 32 | 135 | 1.62e-28 | 106 |
| MsG0580029034.01.T01 | AT3G11090 | 44.037 | 109 | 59 | 2 | 25 | 132 | 10 | 117 | 1.64e-28 | 105 |
| MsG0580029034.01.T01 | AT3G26660 | 46.809 | 94 | 49 | 1 | 27 | 120 | 6 | 98 | 1.94e-28 | 103 |
| MsG0580029034.01.T01 | AT1G16530 | 38.462 | 143 | 84 | 3 | 25 | 166 | 13 | 152 | 2.81e-28 | 104 |
| MsG0580029034.01.T01 | AT3G26620 | 46.809 | 94 | 49 | 1 | 27 | 120 | 6 | 98 | 3.26e-28 | 103 |
| MsG0580029034.01.T01 | AT2G23660 | 47.917 | 96 | 49 | 1 | 25 | 120 | 4 | 98 | 3.08e-26 | 103 |
| MsG0580029034.01.T01 | AT2G23660 | 47.917 | 96 | 49 | 1 | 25 | 120 | 4 | 98 | 3.08e-26 | 103 |
| MsG0580029034.01.T01 | AT2G23660 | 47.917 | 96 | 49 | 1 | 25 | 120 | 4 | 98 | 3.08e-26 | 103 |
| MsG0580029034.01.T01 | AT1G65620 | 56.098 | 82 | 35 | 1 | 25 | 106 | 8 | 88 | 1.01e-25 | 99.4 |
| MsG0580029034.01.T01 | AT1G65620 | 56.098 | 82 | 35 | 1 | 25 | 106 | 8 | 88 | 1.01e-25 | 99.4 |
| MsG0580029034.01.T01 | AT1G65620 | 56.098 | 82 | 35 | 1 | 25 | 106 | 8 | 88 | 1.01e-25 | 99.4 |
| MsG0580029034.01.T01 | AT1G65620 | 56.098 | 82 | 35 | 1 | 25 | 106 | 8 | 88 | 1.01e-25 | 99.4 |
| MsG0580029034.01.T01 | AT1G65620 | 56.098 | 82 | 35 | 1 | 25 | 106 | 8 | 88 | 1.01e-25 | 99.4 |
| MsG0580029034.01.T01 | AT2G40470 | 51.220 | 82 | 39 | 1 | 25 | 106 | 19 | 99 | 8.68e-25 | 96.7 |
| MsG0580029034.01.T01 | AT2G40470 | 51.220 | 82 | 39 | 1 | 25 | 106 | 44 | 124 | 1.17e-24 | 97.1 |
| MsG0580029034.01.T01 | AT3G50510 | 40.351 | 114 | 67 | 1 | 19 | 132 | 5 | 117 | 6.23e-24 | 94.7 |
| MsG0580029034.01.T01 | AT3G50510 | 40.351 | 114 | 67 | 1 | 19 | 132 | 5 | 117 | 6.23e-24 | 94.7 |
| MsG0580029034.01.T01 | AT3G13850 | 36.893 | 103 | 64 | 1 | 26 | 128 | 36 | 137 | 1.58e-19 | 84.3 |
| MsG0580029034.01.T01 | AT5G35900 | 39.796 | 98 | 56 | 3 | 25 | 121 | 4 | 99 | 7.13e-18 | 79.0 |
| MsG0580029034.01.T01 | AT3G47870 | 32.075 | 106 | 71 | 1 | 22 | 127 | 32 | 136 | 3.21e-17 | 79.0 |
| MsG0580029034.01.T01 | AT1G06280 | 36.842 | 76 | 47 | 1 | 26 | 101 | 24 | 98 | 1.58e-15 | 72.4 |
| MsG0580029034.01.T01 | AT1G72980 | 31.683 | 101 | 68 | 1 | 22 | 122 | 9 | 108 | 2.04e-13 | 67.0 |
| MsG0580029034.01.T01 | AT4G22700 | 33.333 | 96 | 61 | 2 | 27 | 121 | 6 | 99 | 4.46e-12 | 62.8 |
Find 40 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCAGTGCATAAGGTTTA+TGG | 0.160867 | 5:+90692171 | MsG0580029034.01.T01:CDS |
| CGCATGCAAGATCCTATTTA+TGG | 0.202738 | 5:+90692282 | MsG0580029034.01.T01:CDS |
| ATGATCCAAAACTTTGATTA+TGG | 0.255926 | 5:-90693112 | None:intergenic |
| TATTACCATAATCAAAGTTT+TGG | 0.276932 | 5:+90693107 | MsG0580029034.01.T01:CDS |
| GTTCCATTATTTGAGTTCAT+TGG | 0.312585 | 5:-90693080 | None:intergenic |
| CAAGAGGAGATAGATATTCT+TGG | 0.321470 | 5:+90693002 | MsG0580029034.01.T01:CDS |
| CTTTGGAAAATGACAGGGTT+TGG | 0.324866 | 5:+90692051 | MsG0580029034.01.T01:CDS |
| GGATTTCCAGAGCCTTTATA+TGG | 0.325475 | 5:+90693167 | MsG0580029034.01.T01:CDS |
| TCTGGAAATCCTTGTGCATT+AGG | 0.337625 | 5:-90693155 | None:intergenic |
| ACATTAGAGAAGTTCTTATC+AGG | 0.342216 | 5:+90693206 | MsG0580029034.01.T01:CDS |
| TGAGCAACACAACCATAAAT+AGG | 0.353770 | 5:-90692294 | None:intergenic |
| GCACCAATGAACTCAAATAA+TGG | 0.356387 | 5:+90693077 | MsG0580029034.01.T01:CDS |
| CACCCTTGGTTCAAGCATAA+TGG | 0.370662 | 5:+90693254 | MsG0580029034.01.T01:CDS |
| GCCTGTTCATAGGAGAAGTA+TGG | 0.380890 | 5:-90692135 | None:intergenic |
| GAGTTGGAATCACCATATAA+AGG | 0.394155 | 5:-90693179 | None:intergenic |
| GAAAGACTTTCATAAAACTT+TGG | 0.404593 | 5:+90692034 | MsG0580029034.01.T01:CDS |
| TCCATACTTCTCCTATGAAC+AGG | 0.425422 | 5:+90692134 | MsG0580029034.01.T01:CDS |
| CTTCTCTAATGTATTTGAGT+TGG | 0.427053 | 5:-90693195 | None:intergenic |
| CACTATATCTTATGAAGCCT+TGG | 0.435812 | 5:+90692257 | MsG0580029034.01.T01:CDS |
| ATGAGTTGAAGCCTGTTCAT+AGG | 0.437710 | 5:-90692145 | None:intergenic |
| GAATCACCATATAAAGGCTC+TGG | 0.448083 | 5:-90693173 | None:intergenic |
| ATAAAACTTTGGAAAATGAC+AGG | 0.453003 | 5:+90692045 | MsG0580029034.01.T01:CDS |
| CACTAGCACACTTTCTCCTT+AGG | 0.465254 | 5:-90692098 | None:intergenic |
| AGGGCTTCTTGAACCACCCT+TGG | 0.469455 | 5:+90693240 | MsG0580029034.01.T01:CDS |
| TATCTATGCATTGCAACATC+AGG | 0.488764 | 5:+90692317 | MsG0580029034.01.T01:CDS |
| GTGGAGCATGCAAGTTCCTA+AGG | 0.513337 | 5:+90692082 | MsG0580029034.01.T01:CDS |
| CTCCATTATGCTTGAACCAA+GGG | 0.523653 | 5:-90693256 | None:intergenic |
| AGGATCTTGCATGCGAGCCA+AGG | 0.545581 | 5:-90692274 | None:intergenic |
| AGATATTCTTGGAAGTGTAA+TGG | 0.550072 | 5:+90693013 | MsG0580029034.01.T01:CDS |
| TCTCCATTATGCTTGAACCA+AGG | 0.563541 | 5:-90693257 | None:intergenic |
| TAATGGAGACATGAAGAACT+AGG | 0.571172 | 5:+90693271 | MsG0580029034.01.T01:CDS |
| ACAGGGTTTGGCTCATCATG+TGG | 0.589293 | 5:+90692063 | MsG0580029034.01.T01:CDS |
| CATTATGCTTGAACCAAGGG+TGG | 0.607660 | 5:-90693253 | None:intergenic |
| AGTGTTAGTGTTGTGAATTG+TGG | 0.611640 | 5:+90693044 | MsG0580029034.01.T01:CDS |
| GCAGGTTGCTAGCTTGCAAG+AGG | 0.615316 | 5:+90692986 | MsG0580029034.01.T01:intron |
| CTTATCAGGAATTGATCAAG+AGG | 0.617949 | 5:+90693220 | MsG0580029034.01.T01:CDS |
| TAAAACTTTGGAAAATGACA+GGG | 0.628064 | 5:+90692046 | MsG0580029034.01.T01:CDS |
| TTATCAGGAATTGATCAAGA+GGG | 0.643489 | 5:+90693221 | MsG0580029034.01.T01:CDS |
| GGCTTCATAAGATATAGTGA+TGG | 0.646623 | 5:-90692253 | None:intergenic |
| GAGCTAATTCCTAATGCACA+AGG | 0.651993 | 5:+90693146 | MsG0580029034.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTCAACATAAAAAAAAAATT+AGG | + | Chr5:90692877-90692896 | MsG0580029034.01.T01:intron | 15.0% |
| !!! | TTTCTAGTTGTATTTTTTTT+TGG | - | Chr5:90692018-90692037 | None:intergenic | 15.0% |
| !! | ATTCAATTCATTTGTAAGTA+AGG | - | Chr5:90692800-90692819 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTCAAAATCATGA+TGG | + | Chr5:90692658-90692677 | MsG0580029034.01.T01:intron | 20.0% |
| !!! | TATTACCATAATCAAAGTTT+TGG | + | Chr5:90693107-90693126 | MsG0580029034.01.T01:CDS | 20.0% |
| ! | AAAATGCGGTAAAATATGAT+CGG | + | Chr5:90692410-90692429 | MsG0580029034.01.T01:intron | 25.0% |
| ! | AATTCATTTGTAAGTAAGGA+TGG | - | Chr5:90692796-90692815 | None:intergenic | 25.0% |
| ! | ATGATCCAAAACTTTGATTA+TGG | - | Chr5:90693115-90693134 | None:intergenic | 25.0% |
| ! | ATGCATCAATATATAAGCAA+TGG | - | Chr5:90692715-90692734 | None:intergenic | 25.0% |
| ! | GAAAGACTTTCATAAAACTT+TGG | + | Chr5:90692034-90692053 | MsG0580029034.01.T01:CDS | 25.0% |
| !! | ATAAAACTTTGGAAAATGAC+AGG | + | Chr5:90692045-90692064 | MsG0580029034.01.T01:CDS | 25.0% |
| !! | TAAAACTTTGGAAAATGACA+GGG | + | Chr5:90692046-90692065 | MsG0580029034.01.T01:CDS | 25.0% |
| !!! | GTGCAAAAATTTTAAAACCT+TGG | - | Chr5:90692540-90692559 | None:intergenic | 25.0% |
| AATGGATACTAGAAATGTAG+CGG | - | Chr5:90692697-90692716 | None:intergenic | 30.0% | |
| ACATTAGAGAAGTTCTTATC+AGG | + | Chr5:90693206-90693225 | MsG0580029034.01.T01:CDS | 30.0% | |
| ATATCCATATAATGCGACTT+TGG | + | Chr5:90692589-90692608 | MsG0580029034.01.T01:intron | 30.0% | |
| CTTCTCTAATGTATTTGAGT+TGG | - | Chr5:90693198-90693217 | None:intergenic | 30.0% | |
| CTTTATATTGCACCAAAATG+CGG | + | Chr5:90692396-90692415 | MsG0580029034.01.T01:intron | 30.0% | |
| TTATCAGGAATTGATCAAGA+GGG | + | Chr5:90693221-90693240 | MsG0580029034.01.T01:CDS | 30.0% | |
| TTTCTTATGTGTAATTGTGC+AGG | + | Chr5:90692968-90692987 | MsG0580029034.01.T01:intron | 30.0% | |
| ! | AGATATTCTTGGAAGTGTAA+TGG | + | Chr5:90693013-90693032 | MsG0580029034.01.T01:CDS | 30.0% |
| ! | GATCATATTTTACCGCATTT+TGG | - | Chr5:90692411-90692430 | None:intergenic | 30.0% |
| ! | GTTCCATTATTTGAGTTCAT+TGG | - | Chr5:90693083-90693102 | None:intergenic | 30.0% |
| ! | TTTTGGATCATACTTGGATA+TGG | + | Chr5:90693124-90693143 | MsG0580029034.01.T01:CDS | 30.0% |
| !! | GCATCACTTCTATTTTGAAT+AGG | - | Chr5:90692231-90692250 | None:intergenic | 30.0% |
| !!! | ACAACCATGGTTTTAAATTG+TGG | - | Chr5:90692507-90692526 | None:intergenic | 30.0% |
| !!! | ATTTTAAAACCTTGGTTGTG+CGG | - | Chr5:90692532-90692551 | None:intergenic | 30.0% |
| !!! | TCAAAGTTTTGGATCATACT+TGG | + | Chr5:90693118-90693137 | MsG0580029034.01.T01:CDS | 30.0% |
| AATCTAACTAGCATCCACAA+CGG | - | Chr5:90692461-90692480 | None:intergenic | 35.0% | |
| AGGCCAAAAAATTCTCTACA+CGG | + | Chr5:90692897-90692916 | MsG0580029034.01.T01:intron | 35.0% | |
| AGTGTTAGTGTTGTGAATTG+TGG | + | Chr5:90693044-90693063 | MsG0580029034.01.T01:CDS | 35.0% | |
| ATGACCTACACATAATTGTG+GGG | + | Chr5:90692922-90692941 | MsG0580029034.01.T01:intron | 35.0% | |
| CAAGAGGAGATAGATATTCT+TGG | + | Chr5:90693002-90693021 | MsG0580029034.01.T01:CDS | 35.0% | |
| CACTATATCTTATGAAGCCT+TGG | + | Chr5:90692257-90692276 | MsG0580029034.01.T01:CDS | 35.0% | |
| CATGACCTACACATAATTGT+GGG | + | Chr5:90692921-90692940 | MsG0580029034.01.T01:intron | 35.0% | |
| CTTATCAGGAATTGATCAAG+AGG | + | Chr5:90693220-90693239 | MsG0580029034.01.T01:CDS | 35.0% | |
| GAGTTGGAATCACCATATAA+AGG | - | Chr5:90693182-90693201 | None:intergenic | 35.0% | |
| GCACCAATGAACTCAAATAA+TGG | + | Chr5:90693077-90693096 | MsG0580029034.01.T01:CDS | 35.0% | |
| GGCTTCATAAGATATAGTGA+TGG | - | Chr5:90692256-90692275 | None:intergenic | 35.0% | |
| GTTGATATTGTGGAAAGTTG+TGG | + | Chr5:90692564-90692583 | MsG0580029034.01.T01:intron | 35.0% | |
| TATCTATGCATTGCAACATC+AGG | + | Chr5:90692317-90692336 | MsG0580029034.01.T01:CDS | 35.0% | |
| TGAGCAACACAACCATAAAT+AGG | - | Chr5:90692297-90692316 | None:intergenic | 35.0% | |
| TTGCACAATCGTTGATATTG+TGG | + | Chr5:90692554-90692573 | MsG0580029034.01.T01:intron | 35.0% | |
| ! | CAGACCACAATTTAAAACCA+TGG | + | Chr5:90692500-90692519 | MsG0580029034.01.T01:intron | 35.0% |
| !! | TCATTTTTCAGCAGTGCATA+AGG | + | Chr5:90692164-90692183 | MsG0580029034.01.T01:CDS | 35.0% |
| CACATAATTGTGGGGTGTAA+TGG | + | Chr5:90692930-90692949 | MsG0580029034.01.T01:intron | 40.0% | |
| CCACAATTATGTGTAGGTCA+TGG | - | Chr5:90692923-90692942 | None:intergenic | 40.0% | |
| CCATGACCTACACATAATTG+TGG | + | Chr5:90692920-90692939 | MsG0580029034.01.T01:intron | 40.0% | |
| CGCATGCAAGATCCTATTTA+TGG | + | Chr5:90692282-90692301 | MsG0580029034.01.T01:CDS | 40.0% | |
| CTCCATTATGCTTGAACCAA+GGG | - | Chr5:90693259-90693278 | None:intergenic | 40.0% | |
| GAATCACCATATAAAGGCTC+TGG | - | Chr5:90693176-90693195 | None:intergenic | 40.0% | |
| GAGCTAATTCCTAATGCACA+AGG | + | Chr5:90693146-90693165 | MsG0580029034.01.T01:CDS | 40.0% | |
| GATCCAGAAAGTTGGAGTAA+TGG | - | Chr5:90692774-90692793 | None:intergenic | 40.0% | |
| GGATTTCCAGAGCCTTTATA+TGG | + | Chr5:90693167-90693186 | MsG0580029034.01.T01:CDS | 40.0% | |
| TAAGGATGGATCCAGAAAGT+TGG | - | Chr5:90692782-90692801 | None:intergenic | 40.0% | |
| TACACCCCACAATTATGTGT+AGG | - | Chr5:90692929-90692948 | None:intergenic | 40.0% | |
| TCAGCAGTGCATAAGGTTTA+TGG | + | Chr5:90692171-90692190 | MsG0580029034.01.T01:CDS | 40.0% | |
| TCCATACTTCTCCTATGAAC+AGG | + | Chr5:90692134-90692153 | MsG0580029034.01.T01:CDS | 40.0% | |
| TCTCCATTATGCTTGAACCA+AGG | - | Chr5:90693260-90693279 | None:intergenic | 40.0% | |
| TCTGGAAATCCTTGTGCATT+AGG | - | Chr5:90693158-90693177 | None:intergenic | 40.0% | |
| TGCACCAAAGTCGCATTATA+TGG | - | Chr5:90692596-90692615 | None:intergenic | 40.0% | |
| TGTGGATGCTAGTTAGATTG+TGG | + | Chr5:90692462-90692481 | MsG0580029034.01.T01:intron | 40.0% | |
| TTGCAATTGTAATGCCGTTG+TGG | + | Chr5:90692444-90692463 | MsG0580029034.01.T01:intron | 40.0% | |
| ! | ATGAGTTGAAGCCTGTTCAT+AGG | - | Chr5:90692148-90692167 | None:intergenic | 40.0% |
| ! | ATGCGACTTTGGTGCATATT+TGG | + | Chr5:90692600-90692619 | MsG0580029034.01.T01:intron | 40.0% |
| ! | CTTTGGAAAATGACAGGGTT+TGG | + | Chr5:90692051-90692070 | MsG0580029034.01.T01:CDS | 40.0% |
| ! | GTGGTCTGCAACATCAATTT+TGG | - | Chr5:90692488-90692507 | None:intergenic | 40.0% |
| !!! | TGGCCGTGTAGAGAATTTTT+TGG | - | Chr5:90692903-90692922 | None:intergenic | 40.0% |
| CACCCTTGGTTCAAGCATAA+TGG | + | Chr5:90693254-90693273 | MsG0580029034.01.T01:CDS | 45.0% | |
| CACTAGCACACTTTCTCCTT+AGG | - | Chr5:90692101-90692120 | None:intergenic | 45.0% | |
| CATTATGCTTGAACCAAGGG+TGG | - | Chr5:90693256-90693275 | None:intergenic | 45.0% | |
| CCAGAAAGTTGGAGTAATGG+AGG | - | Chr5:90692771-90692790 | None:intergenic | 45.0% | |
| CCTCCATTACTCCAACTTTC+TGG | + | Chr5:90692768-90692787 | MsG0580029034.01.T01:intron | 45.0% | |
| GCCTGTTCATAGGAGAAGTA+TGG | - | Chr5:90692138-90692157 | None:intergenic | 45.0% | |
| GCGGTAAAATATGATCGGTG+TGG | + | Chr5:90692415-90692434 | MsG0580029034.01.T01:intron | 45.0% | |
| GTGGAGCATGCAAGTTCCTA+AGG | + | Chr5:90692082-90692101 | MsG0580029034.01.T01:CDS | 50.0% | |
| TTGTGGGGTGTAATGGCAAG+AGG | + | Chr5:90692937-90692956 | MsG0580029034.01.T01:intron | 50.0% | |
| ! | ACAGGGTTTGGCTCATCATG+TGG | + | Chr5:90692063-90692082 | MsG0580029034.01.T01:CDS | 50.0% |
| AGGATCTTGCATGCGAGCCA+AGG | - | Chr5:90692277-90692296 | None:intergenic | 55.0% | |
| AGGGCTTCTTGAACCACCCT+TGG | + | Chr5:90693240-90693259 | MsG0580029034.01.T01:CDS | 55.0% | |
| TGGTTGTGACCGCACAACCA+AGG | + | Chr5:90692520-90692539 | MsG0580029034.01.T01:intron | 55.0% | |
| TGGTTGTGCGGTCACAACCA+TGG | - | Chr5:90692520-90692539 | None:intergenic | 55.0% | |
| ! | GCAGGTTGCTAGCTTGCAAG+AGG | + | Chr5:90692986-90693005 | MsG0580029034.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 90692003 | 90693292 | 90692003 | ID=MsG0580029034.01;Name=MsG0580029034.01 |
| Chr5 | mRNA | 90692003 | 90693292 | 90692003 | ID=MsG0580029034.01.T01;Parent=MsG0580029034.01;Name=MsG0580029034.01.T01;_AED=0.29;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|212 |
| Chr5 | exon | 90692003 | 90692338 | 90692003 | ID=MsG0580029034.01.T01:exon:17694;Parent=MsG0580029034.01.T01 |
| Chr5 | exon | 90692990 | 90693292 | 90692990 | ID=MsG0580029034.01.T01:exon:17695;Parent=MsG0580029034.01.T01 |
| Chr5 | CDS | 90692003 | 90692338 | 90692003 | ID=MsG0580029034.01.T01:cds;Parent=MsG0580029034.01.T01 |
| Chr5 | CDS | 90692990 | 90693292 | 90692990 | ID=MsG0580029034.01.T01:cds;Parent=MsG0580029034.01.T01 |
| Gene Sequence |
| Protein sequence |
