AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029221.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029221.01.T01 MTR_4g133120 75.369 203 25 2 1 178 168 370 1.89e-90 292
MsG0580029221.01.T01 MTR_4g133120 93.939 33 2 0 204 236 458 490 1.87e-12 69.7
MsG0580029221.01.T01 MTR_3g110405 82.353 68 12 0 326 393 141 208 1.58e-32 125
MsG0580029221.01.T01 MTR_8g035890 60.870 69 27 0 328 396 122 190 1.65e-21 94.0
MsG0580029221.01.T01 MTR_8g040300 59.420 69 28 0 328 396 116 184 9.83e-21 91.7
MsG0580029221.01.T01 MTR_2g025830 30.653 199 120 6 42 238 178 360 3.57e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029221.01.T01 AT2G25880 82.353 68 12 0 326 393 129 196 9.05e-33 125
MsG0580029221.01.T01 AT4G32830 82.353 68 12 0 326 393 135 202 1.39e-32 125
MsG0580029221.01.T01 AT2G25880 82.353 68 12 0 326 393 142 209 1.54e-32 125
MsG0580029221.01.T01 AT2G25880 82.353 68 12 0 326 393 190 257 5.96e-32 124
MsG0580029221.01.T01 AT2G45490 48.980 98 44 1 305 396 99 196 2.25e-22 95.9
MsG0580029221.01.T01 AT2G45490 48.980 98 44 1 305 396 99 196 5.09e-22 95.9
MsG0580029221.01.T01 AT2G25880 70.000 40 12 0 354 393 125 164 8.09e-12 65.5

Find 101 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTATTGCTGGACTGTTTA+TGG 0.071769 5:+93919604 MsG0580029221.01.T01:CDS
TACATACATGTTAAAGATTT+TGG 0.132587 5:+93922891 MsG0580029221.01.T01:CDS
CTTGCTCACTAATATTAATT+TGG 0.185518 5:+93918619 MsG0580029221.01.T01:CDS
GCTTTCCATGGCAGTATATA+AGG 0.207343 5:-93922482 None:intergenic
AAACCAGAGAACCTTCTTAT+TGG 0.231506 5:+93922525 MsG0580029221.01.T01:CDS
CAAAGGGTTGGTGTTGGTTC+AGG 0.273096 5:+93918981 MsG0580029221.01.T01:CDS
AAGCTCTTAACAGATTTAAC+AGG 0.292225 5:-93918599 None:intergenic
GCAGAATCAGCATCGAGTTT+AGG 0.297402 5:-93918656 None:intergenic
TTTGCCTTATACAGGAAATA+AGG 0.309317 5:+93918741 MsG0580029221.01.T01:intron
CACTAATATTAATTTGGCTT+TGG 0.315056 5:+93918625 MsG0580029221.01.T01:CDS
TGATAGTTTGTTGAGGCATT+TGG 0.361820 5:+93919032 MsG0580029221.01.T01:CDS
CTGTCATTGAAAGGAAGGTT+TGG 0.372290 5:+93921222 MsG0580029221.01.T01:intron
TGTAAATTGTTTAGTAGAGT+TGG 0.376215 5:+93918862 MsG0580029221.01.T01:CDS
GGTCGTTAGACCAATCTATT+AGG 0.390065 5:-93923275 None:intergenic
AATTGAAGTAAGCTTGAAAA+TGG 0.393954 5:-93923296 None:intergenic
GTAAATTGTTTAGTAGAGTT+GGG 0.397413 5:+93918863 MsG0580029221.01.T01:CDS
CACTGGAATCGAGCAGCAAC+AGG 0.397794 5:+93919153 MsG0580029221.01.T01:CDS
TCAGCATCGAGTTTAGGTTT+AGG 0.403276 5:-93918650 None:intergenic
CAGTCCAGCAATAGTGATTC+GGG 0.405227 5:-93919597 None:intergenic
AAGCATGCTGATGGGGCTGC+TGG 0.411338 5:+93921253 MsG0580029221.01.T01:CDS
TCTAGTTCTTGTCCTGCTGC+TGG 0.412276 5:-93919201 None:intergenic
ACAGTCCAGCAATAGTGATT+CGG 0.412439 5:-93919598 None:intergenic
CTCACAGACATAAGACTTCA+AGG 0.417865 5:-93922932 None:intergenic
AAACTTAAGCTAGCGGACTT+TGG 0.426034 5:+93922654 MsG0580029221.01.T01:CDS
GCTGATGGGGCTGCTGGAAG+TGG 0.440363 5:+93921259 MsG0580029221.01.T01:CDS
TCTAGTAGTGTTGTCATCAT+TGG 0.444114 5:+93922452 MsG0580029221.01.T01:CDS
ACTGTTTATGATCTTTGTCA+TGG 0.449359 5:+93918560 MsG0580029221.01.T01:CDS
TGTTCCCGAATCACTATTGC+TGG 0.464169 5:+93919593 MsG0580029221.01.T01:CDS
CGTGTTCTGATACTTGTATC+AGG 0.474469 5:+93918764 MsG0580029221.01.T01:CDS
GCACCAATAAGAAGGTTCTC+TGG 0.479972 5:-93922528 None:intergenic
CTTTCCATGGCAGTATATAA+GGG 0.483707 5:-93922481 None:intergenic
GGACTGGAATCGAGCAGCAC+TGG 0.498586 5:+93919136 MsG0580029221.01.T01:CDS
TTCCACTGCAAGAAATCCTC+AGG 0.508161 5:+93921012 MsG0580029221.01.T01:CDS
CAGCAGGACAAGAACTAGAA+TGG 0.509828 5:+93919205 MsG0580029221.01.T01:CDS
AATGAGGAAGCCACTGGCCC+CGG 0.512967 5:+93919635 MsG0580029221.01.T01:CDS
CTCTTTGAAACGAAAACAGC+AGG 0.513608 5:-93920971 None:intergenic
TTAAGCTAGCGGACTTTGGA+TGG 0.524617 5:+93922658 MsG0580029221.01.T01:CDS
TTCAAAGAGGACATTTCCTA+CGG 0.527368 5:+93920985 MsG0580029221.01.T01:CDS
ATGCGGTGAAGCATGCTGAT+GGG 0.528350 5:+93921245 MsG0580029221.01.T01:CDS
TCAGCAAGTTCATGAACAAA+CGG 0.529690 5:-93919012 None:intergenic
CCTTTGAAAGCTATTAGCAC+TGG 0.530764 5:-93923069 None:intergenic
ACAAAGGACAAGCAAGGGAA+GGG 0.536140 5:-93919071 None:intergenic
GATGCGGTGAAGCATGCTGA+TGG 0.536359 5:+93921244 MsG0580029221.01.T01:CDS
CCTGTGTGCTGCACATGGTC+CGG 0.538815 5:-93922704 None:intergenic
GGATTACCTTCCACCTGGGA+TGG 0.541323 5:+93922725 MsG0580029221.01.T01:CDS
AGAGGGCCGACGAGCATCAG+TGG 0.544418 5:+93919453 MsG0580029221.01.T01:CDS
CCTCAGCACACCGGGGCCAG+TGG 0.547426 5:-93919645 None:intergenic
ATCGAAGACGTTTCATACGC+AGG 0.550772 5:+93918816 MsG0580029221.01.T01:CDS
GCAGGCTGCACATGTGGCGT+TGG 0.552099 5:+93918834 MsG0580029221.01.T01:CDS
TGTCTGTGAGACAAGTAGTA+AGG 0.554665 5:+93922945 MsG0580029221.01.T01:exon
TCACTTGTGCACCAATAAGA+AGG 0.556527 5:-93922536 None:intergenic
AATTTCACTTGCGGCGTCTG+AGG 0.557109 5:+93918948 MsG0580029221.01.T01:CDS
TGCATACATTCAATCGCAGC+CGG 0.563890 5:+93922685 MsG0580029221.01.T01:CDS
AGTTCTTGTCCTGCTGCTGG+TGG 0.564574 5:-93919198 None:intergenic
TGTTGCTTACCACCAGCAGC+AGG 0.565851 5:+93919189 MsG0580029221.01.T01:CDS
TCCTTTGTTGAACAATGTTG+AGG 0.566218 5:+93919086 MsG0580029221.01.T01:CDS
GAATCACAAAGGGTTGGTGT+TGG 0.569578 5:+93918975 MsG0580029221.01.T01:CDS
CAAAGGACAAGCAAGGGAAG+GGG 0.572807 5:-93919070 None:intergenic
AACAAAGGACAAGCAAGGGA+AGG 0.575612 5:-93919072 None:intergenic
GGACAAGAACTAGAATGGAT+TGG 0.580566 5:+93919210 MsG0580029221.01.T01:CDS
TGCGGTGAAGCATGCTGATG+GGG 0.582053 5:+93921246 MsG0580029221.01.T01:CDS
ACACAGGATTACCTTCCACC+TGG 0.582633 5:+93922720 MsG0580029221.01.T01:CDS
TCATACGCAGGCTGCACATG+TGG 0.584491 5:+93918828 MsG0580029221.01.T01:CDS
TGTGTATGACATGCTTTCCA+TGG 0.585656 5:-93922494 None:intergenic
CATCGTTAAATATGCAAAGA+GGG 0.587269 5:+93919436 MsG0580029221.01.T01:CDS
GATTACCTTCCACCTGGGAT+GGG 0.593669 5:+93922726 MsG0580029221.01.T01:CDS
CTGAGGATGAGAATCACAAA+GGG 0.593777 5:+93918965 MsG0580029221.01.T01:CDS
AGTGGCAAGATATACTATGA+AGG 0.597910 5:+93921277 MsG0580029221.01.T01:CDS
GAGGCATTTGGATTTGAGCA+TGG 0.601636 5:+93919044 MsG0580029221.01.T01:CDS
TTTATCCGCAGGATTACTTG+CGG 0.602338 5:+93920943 MsG0580029221.01.T01:intron
TCCTCAACATTGTTCAACAA+AGG 0.608235 5:-93919087 None:intergenic
CGTGCCCTTATATACTGCCA+TGG 0.608317 5:+93922477 MsG0580029221.01.T01:CDS
AAGGTTACCAAACAATCCGC+AGG 0.609996 5:-93921061 None:intergenic
TTGAAAGGAAGGTTTGGATG+CGG 0.610256 5:+93921228 MsG0580029221.01.T01:intron
GGATGAGAATCACAAAGGGT+TGG 0.611943 5:+93918969 MsG0580029221.01.T01:CDS
GAGCAGCAACAGGCTCTCCA+TGG 0.612896 5:+93919163 MsG0580029221.01.T01:CDS
TGTTCAACAAAGGACAAGCA+AGG 0.613485 5:-93919077 None:intergenic
ATAGAAAGTGTAACAATACA+AGG 0.614484 5:-93923183 None:intergenic
TCATCGTTAAATATGCAAAG+AGG 0.615436 5:+93919435 MsG0580029221.01.T01:CDS
TACCTGAGGATTTCTTGCAG+TGG 0.616606 5:-93921014 None:intergenic
CCGGACCATGTGCAGCACAC+AGG 0.619760 5:+93922704 MsG0580029221.01.T01:CDS
TGCTCGATTCCAGTCCACAC+AGG 0.621157 5:-93919129 None:intergenic
GCTCGATTCCAGTCCACACA+GGG 0.625034 5:-93919128 None:intergenic
ACATACCCATCCCAGGTGGA+AGG 0.625505 5:-93922731 None:intergenic
CCAGTGCTAATAGCTTTCAA+AGG 0.626276 5:+93923069 MsG0580029221.01.T01:three_prime_UTR
ATGGAAAGCATGTCATACAC+AGG 0.627089 5:+93922496 MsG0580029221.01.T01:CDS
GTAATCCTGTGTGCTGCACA+TGG 0.630634 5:-93922709 None:intergenic
CAACTGAACATACCCATCCC+AGG 0.631602 5:-93922738 None:intergenic
AGCTGCTGAAATTTCACTTG+CGG 0.640450 5:+93918939 MsG0580029221.01.T01:CDS
GGTGGTAAGCAACACAACCA+TGG 0.646669 5:-93919180 None:intergenic
AGCTCTTAACAGATTTAACA+GGG 0.648270 5:-93918598 None:intergenic
CACAGGATTACCTTCCACCT+GGG 0.648638 5:+93922721 MsG0580029221.01.T01:CDS
CTTGCAGTGGAAGAATCCGT+AGG 0.656668 5:-93921001 None:intergenic
AACTTGCTGATAGTTTGTTG+AGG 0.656807 5:+93919025 MsG0580029221.01.T01:CDS
TCAGGGTAAACTTAAGCTAG+CGG 0.660725 5:+93922647 MsG0580029221.01.T01:intron
GTTCAACAAAGGACAAGCAA+GGG 0.662680 5:-93919076 None:intergenic
TCTGAGGATGAGAATCACAA+AGG 0.671305 5:+93918964 MsG0580029221.01.T01:CDS
GCAAAAGTTAGAGTTACCTG+AGG 0.697144 5:-93921028 None:intergenic
AAGAATCCACTGATGCTCGT+CGG 0.702162 5:-93919459 None:intergenic
TGGAAAGCATGTCATACACA+GGG 0.705400 5:+93922497 MsG0580029221.01.T01:CDS
CTGAACATACCCATCCCAGG+TGG 0.731337 5:-93922735 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTAATCAATATAATATTGA+AGG - Chr5:93921410-93921429 None:intergenic 15.0%
!!! GTTTTTTTTTTCTTTATGTT+CGG + Chr5:93922995-93923014 MsG0580029221.01.T01:intron 15.0%
!!! TAAATTTATTTTCATGTAAC+AGG + Chr5:93923023-93923042 MsG0580029221.01.T01:intron 15.0%
!!! TATTTACATCGATTTTTATT+AGG + Chr5:93919801-93919820 MsG0580029221.01.T01:intron 15.0%
!!! TTTTTCATACTTTTTATGTT+AGG + Chr5:93922768-93922787 MsG0580029221.01.T01:intron 15.0%
!!! TTTTTTGTCTTAGTATTTTT+GGG + Chr5:93918905-93918924 MsG0580029221.01.T01:CDS 15.0%
!! AAAGTTAAACAAACAAAAAC+AGG - Chr5:93921167-93921186 None:intergenic 20.0%
!! AAATTGAAAATAACAACCAA+AGG - Chr5:93922597-93922616 None:intergenic 20.0%
!! AAGTTAAACAAACAAAAACA+GGG - Chr5:93921166-93921185 None:intergenic 20.0%
!! ACGAAATCAAAACAAATTAA+TGG - Chr5:93921533-93921552 None:intergenic 20.0%
!! CTTTGCATTATTTATTAGAT+CGG - Chr5:93920653-93920672 None:intergenic 20.0%
!! TTTAATATGAAATGATTGTG+TGG + Chr5:93921449-93921468 MsG0580029221.01.T01:intron 20.0%
!! TTTGCATTATTTATTAGATC+GGG - Chr5:93920652-93920671 None:intergenic 20.0%
!!! AAAAAGTAAGTTCAGAATTT+TGG - Chr5:93919749-93919768 None:intergenic 20.0%
!!! ACATGTTAAAGATTTTGTTT+TGG + Chr5:93922973-93922992 MsG0580029221.01.T01:intron 20.0%
!!! CTATGTATTTTACTGTAAAT+TGG + Chr5:93923202-93923221 MsG0580029221.01.T01:three_prime_UTR 20.0%
!!! CTTTTTTGTCTTAGTATTTT+TGG + Chr5:93918904-93918923 MsG0580029221.01.T01:CDS 20.0%
!!! TACATACATGTTAAAGATTT+TGG + Chr5:93922891-93922910 MsG0580029221.01.T01:CDS 20.0%
!!! TGTCATATGTTTTTGTTTTT+AGG + Chr5:93922393-93922412 MsG0580029221.01.T01:intron 20.0%
!!! TTTTTGTCTTAGTATTTTTG+GGG + Chr5:93918906-93918925 MsG0580029221.01.T01:CDS 20.0%
! AAACAAAAAATAGCACCTAT+TGG - Chr5:93921373-93921392 None:intergenic 25.0%
! AAACTTTCATACAAGTATAG+AGG - Chr5:93920196-93920215 None:intergenic 25.0%
! AACAACTGGTTAAAAAGTAA+AGG + Chr5:93920785-93920804 MsG0580029221.01.T01:intron 25.0%
! AACTTCAAAATCATGTTTAG+TGG - Chr5:93920397-93920416 None:intergenic 25.0%
! AATCAAGAACATTTCATCAA+AGG - Chr5:93920457-93920476 None:intergenic 25.0%
! AGTGTTAAGATTATATTCCA+TGG + Chr5:93920718-93920737 MsG0580029221.01.T01:intron 25.0%
! ATTAAACAAATAGACGACTA+CGG - Chr5:93921435-93921454 None:intergenic 25.0%
! ATTATGGATTTCTCAATCTT+AGG + Chr5:93922026-93922045 MsG0580029221.01.T01:intron 25.0%
! ATTGCCTAAAAACAAACAAA+AGG - Chr5:93922433-93922452 None:intergenic 25.0%
! CTAAGACAAAAAAGATACAA+AGG - Chr5:93918898-93918917 None:intergenic 25.0%
! CTAATAAATAATGCAAAGAG+AGG + Chr5:93920655-93920674 MsG0580029221.01.T01:intron 25.0%
! CTTGCTCACTAATATTAATT+TGG + Chr5:93918619-93918638 MsG0580029221.01.T01:CDS 25.0%
! GAAAATCTTCTTCATTATCA+GGG + Chr5:93922630-93922649 MsG0580029221.01.T01:intron 25.0%
! GTAAATTGTTTAGTAGAGTT+GGG + Chr5:93918863-93918882 MsG0580029221.01.T01:CDS 25.0%
! GTTTATGGAATTCAAAAATG+AGG + Chr5:93919619-93919638 MsG0580029221.01.T01:CDS 25.0%
! TAATATTGAAGTTCAAGCAA+CGG + Chr5:93921692-93921711 MsG0580029221.01.T01:intron 25.0%
! TCATTATATTCAAAGCCAAT+AGG + Chr5:93921355-93921374 MsG0580029221.01.T01:intron 25.0%
! TCTAGTAGTTGTTAATGTTT+GGG - Chr5:93920888-93920907 None:intergenic 25.0%
! TGAAAATCTTCTTCATTATC+AGG + Chr5:93922629-93922648 MsG0580029221.01.T01:intron 25.0%
! TGAAATAAAGAGCTAAAACA+AGG + Chr5:93919927-93919946 MsG0580029221.01.T01:intron 25.0%
! TGGATAAACATAACAGAATT+GGG - Chr5:93919729-93919748 None:intergenic 25.0%
! TGTAAATTGTTTAGTAGAGT+TGG + Chr5:93918862-93918881 MsG0580029221.01.T01:CDS 25.0%
! TTAAACTTCCAGTAACATAT+AGG + Chr5:93920830-93920849 MsG0580029221.01.T01:intron 25.0%
! TTCTAGTAGTTGTTAATGTT+TGG - Chr5:93920889-93920908 None:intergenic 25.0%
! TTGCCTAAAAACAAACAAAA+GGG - Chr5:93922432-93922451 None:intergenic 25.0%
! TTGGATAAACATAACAGAAT+TGG - Chr5:93919730-93919749 None:intergenic 25.0%
! TTTAGTACTTTAGTGAAAAC+CGG + Chr5:93920020-93920039 MsG0580029221.01.T01:intron 25.0%
!! AAGATTTCTAAGCTTTATGA+TGG + Chr5:93919356-93919375 MsG0580029221.01.T01:intron 25.0%
!! AAGTTTGTATTTTTCTGCAT+TGG + Chr5:93920210-93920229 MsG0580029221.01.T01:intron 25.0%
!! ATAGAAAGTGTAACAATACA+AGG - Chr5:93923186-93923205 None:intergenic 25.0%
!! ATTATCTGATTCAACCATTT+TGG + Chr5:93920250-93920269 MsG0580029221.01.T01:intron 25.0%
!! CACTAATATTAATTTGGCTT+TGG + Chr5:93918625-93918644 MsG0580029221.01.T01:CDS 25.0%
!! GAATCTAAAGTGAAATTCTT+AGG - Chr5:93921797-93921816 None:intergenic 25.0%
!! TGTTTCTTTTATGATTCCTT+TGG + Chr5:93922578-93922597 MsG0580029221.01.T01:intron 25.0%
!! TTATCTGATTCAACCATTTT+GGG + Chr5:93920251-93920270 MsG0580029221.01.T01:intron 25.0%
!!! ACGTAATGTGAGTTTTAAAT+AGG - Chr5:93920347-93920366 None:intergenic 25.0%
!!! AGAAATCTTGTTTGATCTTT+TGG - Chr5:93919705-93919724 None:intergenic 25.0%
!!! AGGTGCTATTTTTTGTTTTT+AGG + Chr5:93921375-93921394 MsG0580029221.01.T01:intron 25.0%
!!! AGTATAGAGGTTTTATATCA+TGG - Chr5:93920183-93920202 None:intergenic 25.0%
!!! ATAAGCTGATTTGAGATAAA+GGG + Chr5:93921620-93921639 MsG0580029221.01.T01:intron 25.0%
!!! CATTGGTTTTGAATTTAATG+AGG + Chr5:93920227-93920246 MsG0580029221.01.T01:intron 25.0%
!!! GAAATCTTGTTTGATCTTTT+GGG - Chr5:93919704-93919723 None:intergenic 25.0%
!!! GGCTTTGAATATAATGATAT+AGG - Chr5:93921352-93921371 None:intergenic 25.0%
!!! TAGTATTTTTGGGGTTTATT+TGG + Chr5:93918915-93918934 MsG0580029221.01.T01:CDS 25.0%
!!! TCTGTTATATGTGGTTTTAT+TGG - Chr5:93920554-93920573 None:intergenic 25.0%
!!! TGCTAAGTGAATTTTAGTTT+TGG + Chr5:93921110-93921129 MsG0580029221.01.T01:intron 25.0%
!!! TTGTTTTGATACTAGTTTCT+TGG + Chr5:93921554-93921573 MsG0580029221.01.T01:intron 25.0%
!!! TTTGAAGTTGTTGTTTTTAG+TGG + Chr5:93920408-93920427 MsG0580029221.01.T01:intron 25.0%
AAACAATAGTCTAAGTATGC+AGG - Chr5:93922563-93922582 None:intergenic 30.0%
AAGATTTCAACACAATCCAT+TGG + Chr5:93920508-93920527 MsG0580029221.01.T01:intron 30.0%
AAGCTCTTAACAGATTTAAC+AGG - Chr5:93918602-93918621 None:intergenic 30.0%
AATACGTGAATCAGACATAT+GGG - Chr5:93920289-93920308 None:intergenic 30.0%
AATCCATAATGAAAACACAG+TGG - Chr5:93922016-93922035 None:intergenic 30.0%
ACTGTTTATGATCTTTGTCA+TGG + Chr5:93918560-93918579 MsG0580029221.01.T01:CDS 30.0%
AGATTTCAACACAATCCATT+GGG + Chr5:93920509-93920528 MsG0580029221.01.T01:intron 30.0%
AGCTCTTAACAGATTTAACA+GGG - Chr5:93918601-93918620 None:intergenic 30.0%
CATCGTTAAATATGCAAAGA+GGG + Chr5:93919436-93919455 MsG0580029221.01.T01:CDS 30.0%
CGAGGAAAAAAATCCATATA+AGG - Chr5:93922832-93922851 None:intergenic 30.0%
GATTGTGTTGAAATCTTGTA+TGG - Chr5:93920505-93920524 None:intergenic 30.0%
GGATAAACATAACAGAATTG+GGG - Chr5:93919728-93919747 None:intergenic 30.0%
TAAACAAACAAAAACAGGGA+AGG - Chr5:93921162-93921181 None:intergenic 30.0%
TAACTCTACCTATATGTTAC+TGG - Chr5:93920841-93920860 None:intergenic 30.0%
TACAAAACTCTGTCATTGAA+AGG + Chr5:93921213-93921232 MsG0580029221.01.T01:intron 30.0%
TATGCAAGAATATCACACTA+AGG + Chr5:93921940-93921959 MsG0580029221.01.T01:intron 30.0%
TCACGTATTCATTTATCACA+CGG + Chr5:93920300-93920319 MsG0580029221.01.T01:intron 30.0%
TCATCGTTAAATATGCAAAG+AGG + Chr5:93919435-93919454 MsG0580029221.01.T01:CDS 30.0%
TTAAGAGATTCCTTGCATTA+AGG + Chr5:93921840-93921859 MsG0580029221.01.T01:intron 30.0%
TTAGTACTTTAGTGAAAACC+GGG + Chr5:93920021-93920040 MsG0580029221.01.T01:intron 30.0%
TTATCACACGGAAATACAAT+AGG + Chr5:93920312-93920331 MsG0580029221.01.T01:intron 30.0%
TTGTGCTTTAGTGTTTACTA+TGG + Chr5:93922212-93922231 MsG0580029221.01.T01:intron 30.0%
TTGTGTGGAATTTGTATACT+TGG + Chr5:93921464-93921483 MsG0580029221.01.T01:intron 30.0%
TTTGCCTTATACAGGAAATA+AGG + Chr5:93918741-93918760 MsG0580029221.01.T01:intron 30.0%
! AATTTTAGACAACAGCTGAT+CGG - Chr5:93919269-93919288 None:intergenic 30.0%
! AGATTCAAAACATGAGTTGA+AGG + Chr5:93921867-93921886 MsG0580029221.01.T01:intron 30.0%
! AGTTTAACACCTTTTATGCT+AGG - Chr5:93920817-93920836 None:intergenic 30.0%
! ATGTGTACCTTACATTTTGA+AGG + Chr5:93921596-93921615 MsG0580029221.01.T01:intron 30.0%
! ATGTTGAACAAGTACTTTTG+AGG + Chr5:93919834-93919853 MsG0580029221.01.T01:intron 30.0%
! CTTTGTTATGTAGGATAATG+TGG + Chr5:93921894-93921913 MsG0580029221.01.T01:intron 30.0%
! TATCTGATTCAACCATTTTG+GGG + Chr5:93920252-93920271 MsG0580029221.01.T01:intron 30.0%
! TCTCTCACTATTGTTTCTTA+GGG - Chr5:93919898-93919917 None:intergenic 30.0%
! TTCTCTCACTATTGTTTCTT+AGG - Chr5:93919899-93919918 None:intergenic 30.0%
! TTTGAGATAAAGGGCTTATT+AGG + Chr5:93921629-93921648 MsG0580029221.01.T01:intron 30.0%
! TTTGTTTAACTTTCCGATTG+TGG + Chr5:93921174-93921193 MsG0580029221.01.T01:intron 30.0%
!! CAACCCTTTTGTTTGTTTTT+AGG + Chr5:93922426-93922445 MsG0580029221.01.T01:intron 30.0%
!! CAACTCATGTTTTGAATCTA+AGG - Chr5:93921866-93921885 None:intergenic 30.0%
!! CATAAGCTGATTTGAGATAA+AGG + Chr5:93921619-93921638 MsG0580029221.01.T01:intron 30.0%
!! CTACTTTTAGCCTAATAGAT+TGG + Chr5:93923265-93923284 MsG0580029221.01.T01:three_prime_UTR 30.0%
!! GCTTTCAAGTTTGTGTTTAT+TGG + Chr5:93922120-93922139 MsG0580029221.01.T01:intron 30.0%
!! TTTCTAAGGTTAATGAAGTG+AGG - Chr5:93919953-93919972 None:intergenic 30.0%
!!! AAGCTTTGTGGTTTTGATAA+TGG + Chr5:93922181-93922200 MsG0580029221.01.T01:intron 30.0%
!!! AGTTGTTGTTTTTAGTGGAT+TGG + Chr5:93920413-93920432 MsG0580029221.01.T01:intron 30.0%
!!! ATCTCTTGTCCATTTTTTGA+AGG - Chr5:93919300-93919319 None:intergenic 30.0%
!!! TGTATCAGGCATTTTTTGAA+TGG + Chr5:93918778-93918797 MsG0580029221.01.T01:CDS 30.0%
!!! TTTTGGTTTCTTTTTGTTGC+CGG + Chr5:93919678-93919697 MsG0580029221.01.T01:intron 30.0%
AAACCAGAGAACCTTCTTAT+TGG + Chr5:93922525-93922544 MsG0580029221.01.T01:CDS 35.0%
AAACTCTGTCATTGAAAGGA+AGG + Chr5:93921217-93921236 MsG0580029221.01.T01:intron 35.0%
AACATCTCATATGGCAAAGT+AGG + Chr5:93920139-93920158 MsG0580029221.01.T01:intron 35.0%
ACAAAAACAGGGAAGGAATA+AGG - Chr5:93921155-93921174 None:intergenic 35.0%
AGCATATTGAACCTGAGATT+TGG - Chr5:93921502-93921521 None:intergenic 35.0%
AGGAAACTTCCTAGCATAAA+AGG + Chr5:93920805-93920824 MsG0580029221.01.T01:intron 35.0%
AGTGGCAAGATATACTATGA+AGG + Chr5:93921277-93921296 MsG0580029221.01.T01:CDS 35.0%
AGTTTGTACTTCGCCTTATA+TGG + Chr5:93922816-93922835 MsG0580029221.01.T01:intron 35.0%
CAAATGTCACTCTGTATTTG+CGG + Chr5:93920579-93920598 MsG0580029221.01.T01:intron 35.0%
CATCATTGGATTCATTGTTG+TGG + Chr5:93922071-93922090 MsG0580029221.01.T01:intron 35.0%
CTTCTATTATGCCAAATCTC+AGG + Chr5:93921488-93921507 MsG0580029221.01.T01:intron 35.0%
CTTTCCATGGCAGTATATAA+GGG - Chr5:93922484-93922503 None:intergenic 35.0%
GAATACGTGAATCAGACATA+TGG - Chr5:93920290-93920309 None:intergenic 35.0%
GCTTATGCCTTCAAAATGTA+AGG - Chr5:93921606-93921625 None:intergenic 35.0%
GTAGGATAATGTGGTTTGAA+GGG + Chr5:93921903-93921922 MsG0580029221.01.T01:intron 35.0%
TCAGCAAGTTCATGAACAAA+CGG - Chr5:93919015-93919034 None:intergenic 35.0%
TCCTCAACATTGTTCAACAA+AGG - Chr5:93919090-93919109 None:intergenic 35.0%
TCCTTTGTTGAACAATGTTG+AGG + Chr5:93919086-93919105 MsG0580029221.01.T01:CDS 35.0%
TCTAGTAGTGTTGTCATCAT+TGG + Chr5:93922452-93922471 MsG0580029221.01.T01:CDS 35.0%
TGAAAGGCAAACATCTCATA+TGG + Chr5:93920130-93920149 MsG0580029221.01.T01:intron 35.0%
TGATACGTGCCTTCAAAAAA+TGG + Chr5:93919288-93919307 MsG0580029221.01.T01:intron 35.0%
TGATAGACAAACAAACAACC+CGG - Chr5:93920042-93920061 None:intergenic 35.0%
TGCTAAGATCTTCTTAACCA+TGG - Chr5:93920738-93920757 None:intergenic 35.0%
TGGAGGACTATATCAATGAA+AGG + Chr5:93920114-93920133 MsG0580029221.01.T01:intron 35.0%
TGTAGGATAATGTGGTTTGA+AGG + Chr5:93921902-93921921 MsG0580029221.01.T01:intron 35.0%
TTCAAAGAGGACATTTCCTA+CGG + Chr5:93920985-93921004 MsG0580029221.01.T01:CDS 35.0%
TTCATTGATATAGTCCTCCA+AGG - Chr5:93920114-93920133 None:intergenic 35.0%
TTTGATGCGTCTGTTATATG+TGG - Chr5:93920563-93920582 None:intergenic 35.0%
TTTGTTTGTGTTCTGTTCCA+TGG + Chr5:93921817-93921836 MsG0580029221.01.T01:intron 35.0%
! CTGCAATGCTATATGTTTTC+AGG + Chr5:93921312-93921331 MsG0580029221.01.T01:intron 35.0%
! TTTGAAGGGACTGACTTAAT+TGG + Chr5:93921917-93921936 MsG0580029221.01.T01:intron 35.0%
!! AACTTGCTGATAGTTTGTTG+AGG + Chr5:93919025-93919044 MsG0580029221.01.T01:CDS 35.0%
!! AGAATCTATCGATTTACCTG+CGG + Chr5:93920905-93920924 MsG0580029221.01.T01:intron 35.0%
!! CTTCAAGGTGTTCTTTTCTT+TGG - Chr5:93922920-93922939 None:intergenic 35.0%
!! GAGTTTTGTATGACCAGAAT+TGG - Chr5:93921203-93921222 None:intergenic 35.0%
!! TATCATGGAAGCATTTGTGA+TGG - Chr5:93920168-93920187 None:intergenic 35.0%
!! TGATAGTTTGTTGAGGCATT+TGG + Chr5:93919032-93919051 MsG0580029221.01.T01:CDS 35.0%
!!! GCGATTTTTTTGAAGCTTTG+TGG + Chr5:93922169-93922188 MsG0580029221.01.T01:intron 35.0%
!!! TATGTGGTTTTATTGGACAG+AGG - Chr5:93920547-93920566 None:intergenic 35.0%
AAAATCCGCAAGTAATCCTG+CGG - Chr5:93920951-93920970 None:intergenic 40.0%
AAAGGGCTTATTAGGTGCAA+GGG + Chr5:93921637-93921656 MsG0580029221.01.T01:intron 40.0%
AAGTTGCATGAGATGCTCAT+TGG + Chr5:93919563-93919582 MsG0580029221.01.T01:intron 40.0%
ACAAGAATGTCACCAATTCG+AGG + Chr5:93919486-93919505 MsG0580029221.01.T01:intron 40.0%
ACAGTCCAGCAATAGTGATT+CGG - Chr5:93919601-93919620 None:intergenic 40.0%
AGCTGCTGAAATTTCACTTG+CGG + Chr5:93918939-93918958 MsG0580029221.01.T01:CDS 40.0%
CACTATTGCTGGACTGTTTA+TGG + Chr5:93919604-93919623 MsG0580029221.01.T01:CDS 40.0%
CAGCGTAACAAGAACCAAAA+TGG - Chr5:93918717-93918736 None:intergenic 40.0%
CCAGAATTGGATTCCACAAT+CGG - Chr5:93921190-93921209 None:intergenic 40.0%
CCAGATCAGAAAAATGCATG+AGG - Chr5:93919777-93919796 None:intergenic 40.0%
CCAGTGCTAATAGCTTTCAA+AGG + Chr5:93923069-93923088 MsG0580029221.01.T01:three_prime_UTR 40.0%
CGTAACAAGAACCAAAATGG+CGG - Chr5:93918714-93918733 None:intergenic 40.0%
CGTGTTCTGATACTTGTATC+AGG + Chr5:93918764-93918783 MsG0580029221.01.T01:CDS 40.0%
CTCAATCTTAGGACTGTTTC+AGG + Chr5:93922037-93922056 MsG0580029221.01.T01:intron 40.0%
CTCACAGACATAAGACTTCA+AGG - Chr5:93922935-93922954 None:intergenic 40.0%
CTCCAAGGATGTCATCAAAT+TGG - Chr5:93920099-93920118 None:intergenic 40.0%
CTCTTCAGCTGCAATTTCTA+AGG - Chr5:93919967-93919986 None:intergenic 40.0%
CTGAGGATGAGAATCACAAA+GGG + Chr5:93918965-93918984 MsG0580029221.01.T01:CDS 40.0%
CTGCACTTAACATTAACACC+TGG - Chr5:93922870-93922889 None:intergenic 40.0%
CTGTCATTGAAAGGAAGGTT+TGG + Chr5:93921222-93921241 MsG0580029221.01.T01:intron 40.0%
GACAAGGAAATGGTGTTTGA+AGG + Chr5:93919325-93919344 MsG0580029221.01.T01:intron 40.0%
GAGATTCACTGACAAGGAAA+TGG + Chr5:93919315-93919334 MsG0580029221.01.T01:intron 40.0%
GATCGGGTTCACAAGATTTA+TGG - Chr5:93920636-93920655 None:intergenic 40.0%
GCAAAAGTTAGAGTTACCTG+AGG - Chr5:93921031-93921050 None:intergenic 40.0%
GCTGTATGTTTGCCTTATAC+AGG + Chr5:93918733-93918752 MsG0580029221.01.T01:intron 40.0%
GCTTTCCATGGCAGTATATA+AGG - Chr5:93922485-93922504 None:intergenic 40.0%
GGACAAGAACTAGAATGGAT+TGG + Chr5:93919210-93919229 MsG0580029221.01.T01:CDS 40.0%
GGCGAAGTACAAACTATGAA+AGG - Chr5:93922811-93922830 None:intergenic 40.0%
GGTCGTTAGACCAATCTATT+AGG - Chr5:93923278-93923297 None:intergenic 40.0%
GTTCAACAAAGGACAAGCAA+GGG - Chr5:93919079-93919098 None:intergenic 40.0%
TAAAGGGCTTATTAGGTGCA+AGG + Chr5:93921636-93921655 MsG0580029221.01.T01:intron 40.0%
TCAGGGTAAACTTAAGCTAG+CGG + Chr5:93922647-93922666 MsG0580029221.01.T01:intron 40.0%
TCGTGTTCATTGTTTGTTCC+AGG + Chr5:93922849-93922868 MsG0580029221.01.T01:intron 40.0%
TCTGAGGATGAGAATCACAA+AGG + Chr5:93918964-93918983 MsG0580029221.01.T01:CDS 40.0%
TGCAAGGAATCTCTTAACCA+TGG - Chr5:93921837-93921856 None:intergenic 40.0%
TGGAACAAACAATGAACACG+AGG - Chr5:93922850-93922869 None:intergenic 40.0%
TGTCTGTGAGACAAGTAGTA+AGG + Chr5:93922945-93922964 MsG0580029221.01.T01:exon 40.0%
TGTGTATGACATGCTTTCCA+TGG - Chr5:93922497-93922516 None:intergenic 40.0%
TGTTCAACAAAGGACAAGCA+AGG - Chr5:93919080-93919099 None:intergenic 40.0%
TTATGTTAGGTGTACTTCGC+AGG + Chr5:93922781-93922800 MsG0580029221.01.T01:intron 40.0%
TTCAAAAATGAGGAAGCCAC+TGG + Chr5:93919629-93919648 MsG0580029221.01.T01:CDS 40.0%
TTCACTTAGCATTGCTCAAG+AGG - Chr5:93921101-93921120 None:intergenic 40.0%
TTGAAAGGAAGGTTTGGATG+CGG + Chr5:93921228-93921247 MsG0580029221.01.T01:intron 40.0%
TTTATCCGCAGGATTACTTG+CGG + Chr5:93920943-93920962 MsG0580029221.01.T01:intron 40.0%
! ATGGAAAGCATGTCATACAC+AGG + Chr5:93922496-93922515 MsG0580029221.01.T01:CDS 40.0%
! ATTGGATTGCTTGTTGCTTG+AGG + Chr5:93920431-93920450 MsG0580029221.01.T01:intron 40.0%
! CAATTTGATGACATCCTTGG+AGG + Chr5:93920097-93920116 MsG0580029221.01.T01:intron 40.0%
! CATGAATTCTTCCGCCATTT+TGG + Chr5:93918700-93918719 MsG0580029221.01.T01:intron 40.0%
! CCTCATGCATTTTTCTGATC+TGG + Chr5:93919774-93919793 MsG0580029221.01.T01:intron 40.0%
! CCTTTGAAAGCTATTAGCAC+TGG - Chr5:93923072-93923091 None:intergenic 40.0%
! CTCCAATTTGATGACATCCT+TGG + Chr5:93920094-93920113 MsG0580029221.01.T01:intron 40.0%
! GAAGGCTGTCTTTGTTATGT+AGG + Chr5:93921885-93921904 MsG0580029221.01.T01:intron 40.0%
! GAATCTAAGGCCTTAATGCA+AGG - Chr5:93921853-93921872 None:intergenic 40.0%
! GGTAACTCTAACTTTTGCTG+AGG + Chr5:93921033-93921052 MsG0580029221.01.T01:CDS 40.0%
! TCAGCATCGAGTTTAGGTTT+AGG - Chr5:93918653-93918672 None:intergenic 40.0%
! TGGAAAGCATGTCATACACA+GGG + Chr5:93922497-93922516 MsG0580029221.01.T01:CDS 40.0%
!! AAACTTAAGCTAGCGGACTT+TGG + Chr5:93922654-93922673 MsG0580029221.01.T01:CDS 40.0%
!! CACGCCTTATTTCCTGTATA+AGG - Chr5:93918748-93918767 None:intergenic 40.0%
!! CTCTTTGAAACGAAAACAGC+AGG - Chr5:93920974-93920993 None:intergenic 40.0%
!! GTGCCACTGTGTTTTCATTA+TGG + Chr5:93922010-93922029 MsG0580029221.01.T01:intron 40.0%
!! TCTTGTTTGATCTTTTGGGC+CGG - Chr5:93919700-93919719 None:intergenic 40.0%
!! TGTTTGGTAACCTTTTCCTG+CGG + Chr5:93921070-93921089 MsG0580029221.01.T01:intron 40.0%
!!! AACCATTTTGGGGCTGTTTT+AGG + Chr5:93920262-93920281 MsG0580029221.01.T01:intron 40.0%
!!! AAGCTTTTTTAGTCCCTGTG+TGG + Chr5:93919115-93919134 MsG0580029221.01.T01:CDS 40.0%
!!! CTGCTGTTTTCGTTTCAAAG+AGG + Chr5:93920972-93920991 MsG0580029221.01.T01:CDS 40.0%
AACAAAGGACAAGCAAGGGA+AGG - Chr5:93919075-93919094 None:intergenic 45.0%
AAGAATCCACTGATGCTCGT+CGG - Chr5:93919462-93919481 None:intergenic 45.0%
AAGGTTACCAAACAATCCGC+AGG - Chr5:93921064-93921083 None:intergenic 45.0%
AATGTCACCAATTCGAGGCT+AGG + Chr5:93919491-93919510 MsG0580029221.01.T01:intron 45.0%
ACAAAGGACAAGCAAGGGAA+GGG - Chr5:93919074-93919093 None:intergenic 45.0%
ACACTTGAACTGTTCTGCCA+AGG - Chr5:93922306-93922325 None:intergenic 45.0%
ACCTCGGGAAATCATCATCA+CGG - Chr5:93919527-93919546 None:intergenic 45.0%
AGAGGAAAATCCGCAGGAAA+AGG - Chr5:93921083-93921102 None:intergenic 45.0%
AGCCATGTTGCCAGATGAAA+TGG + Chr5:93922279-93922298 MsG0580029221.01.T01:intron 45.0%
ATCGAAGACGTTTCATACGC+AGG + Chr5:93918816-93918835 MsG0580029221.01.T01:CDS 45.0%
ATTGGACAGAGGTGGCTATT+TGG - Chr5:93920536-93920555 None:intergenic 45.0%
CAGCAGGACAAGAACTAGAA+TGG + Chr5:93919205-93919224 MsG0580029221.01.T01:CDS 45.0%
CAGTCCAGCAATAGTGATTC+GGG - Chr5:93919600-93919619 None:intergenic 45.0%
CCAAGGACTATCATGGTAGA+GGG + Chr5:93920607-93920626 MsG0580029221.01.T01:intron 45.0%
CCGATTGTGGAATCCAATTC+TGG + Chr5:93921187-93921206 MsG0580029221.01.T01:intron 45.0%
CTCGTAGTCTTCTTTCACCT+CGG - Chr5:93919543-93919562 None:intergenic 45.0%
GAAATTGCAGCTGAAGAGTG+AGG + Chr5:93919969-93919988 MsG0580029221.01.T01:intron 45.0%
GCACCAATAAGAAGGTTCTC+TGG - Chr5:93922531-93922550 None:intergenic 45.0%
GCCATGTTGCCAGATGAAAT+GGG + Chr5:93922280-93922299 MsG0580029221.01.T01:intron 45.0%
GCTGAAGAGTGAGGATTTAG+TGG + Chr5:93919978-93919997 MsG0580029221.01.T01:intron 45.0%
GGACAAGAGATTCACTGACA+AGG + Chr5:93919309-93919328 MsG0580029221.01.T01:intron 45.0%
GGATGAGAATCACAAAGGGT+TGG + Chr5:93918969-93918988 MsG0580029221.01.T01:CDS 45.0%
GTCCTAAAACAGCCCCAAAA+TGG - Chr5:93920267-93920286 None:intergenic 45.0%
TACCTGAGGATTTCTTGCAG+TGG - Chr5:93921017-93921036 None:intergenic 45.0%
TCAAGCAACGGTTGAGGTAA+GGG + Chr5:93921704-93921723 MsG0580029221.01.T01:intron 45.0%
TCCAAGGACTATCATGGTAG+AGG + Chr5:93920606-93920625 MsG0580029221.01.T01:intron 45.0%
TCGTAGTCTTCTTTCACCTC+GGG - Chr5:93919542-93919561 None:intergenic 45.0%
TGAAGTTCAAGCAACGGTTG+AGG + Chr5:93921698-93921717 MsG0580029221.01.T01:intron 45.0%
TGCAAAGAGAGGACTGACTA+AGG + Chr5:93920666-93920685 MsG0580029221.01.T01:intron 45.0%
TGCATACATTCAATCGCAGC+CGG + Chr5:93922685-93922704 MsG0580029221.01.T01:CDS 45.0%
TGCTGCGAAAATTTATCCGC+AGG + Chr5:93920932-93920951 MsG0580029221.01.T01:intron 45.0%
TGTTCCCGAATCACTATTGC+TGG + Chr5:93919593-93919612 MsG0580029221.01.T01:CDS 45.0%
TTCAAGCAACGGTTGAGGTA+AGG + Chr5:93921703-93921722 MsG0580029221.01.T01:intron 45.0%
TTCCACTGCAAGAAATCCTC+AGG + Chr5:93921012-93921031 MsG0580029221.01.T01:CDS 45.0%
! ATTTTCGCAGCAAAATCCGC+AGG - Chr5:93920924-93920943 None:intergenic 45.0%
! CTTAGGACTGTTTCAGGTGA+TGG + Chr5:93922043-93922062 MsG0580029221.01.T01:intron 45.0%
! GAGGCATTTGGATTTGAGCA+TGG + Chr5:93919044-93919063 MsG0580029221.01.T01:CDS 45.0%
! GCAGAATCAGCATCGAGTTT+AGG - Chr5:93918659-93918678 None:intergenic 45.0%
! TTAGTGGCAAAAAGCGTGTG+TGG - Chr5:93920381-93920400 None:intergenic 45.0%
! TTTTGCTGAGGCTTTTCCTG+CGG + Chr5:93921045-93921064 MsG0580029221.01.T01:CDS 45.0%
!! GAATCACAAAGGGTTGGTGT+TGG + Chr5:93918975-93918994 MsG0580029221.01.T01:CDS 45.0%
!! TTAAGCTAGCGGACTTTGGA+TGG + Chr5:93922658-93922677 MsG0580029221.01.T01:CDS 45.0%
!! TTTTTAGTCCCTGTGTGGAC+TGG + Chr5:93919120-93919139 MsG0580029221.01.T01:CDS 45.0%
!!! GTGGTTTTATTGGACAGAGG+TGG - Chr5:93920544-93920563 None:intergenic 45.0%
AATGCCTCCTAGCCTCGAAT+TGG - Chr5:93919501-93919520 None:intergenic 50.0%
AATTTCACTTGCGGCGTCTG+AGG + Chr5:93918948-93918967 MsG0580029221.01.T01:CDS 50.0%
ACACAGGATTACCTTCCACC+TGG + Chr5:93922720-93922739 MsG0580029221.01.T01:CDS 50.0%
AGGTAAGGGCTTCTGAACGT+TGG + Chr5:93921718-93921737 MsG0580029221.01.T01:intron 50.0%
AGGTGGCTATTTGGACCCAA+TGG - Chr5:93920527-93920546 None:intergenic 50.0%
ATGCGGTGAAGCATGCTGAT+GGG + Chr5:93921245-93921264 MsG0580029221.01.T01:CDS 50.0%
CAAAGGACAAGCAAGGGAAG+GGG - Chr5:93919073-93919092 None:intergenic 50.0%
CAACTGAACATACCCATCCC+AGG - Chr5:93922741-93922760 None:intergenic 50.0%
CACAGGATTACCTTCCACCT+GGG + Chr5:93922721-93922740 MsG0580029221.01.T01:CDS 50.0%
CATGAGATGCTCATTGGCAG+GGG + Chr5:93919569-93919588 MsG0580029221.01.T01:intron 50.0%
CCCTCTACCATGATAGTCCT+TGG - Chr5:93920610-93920629 None:intergenic 50.0%
CGTGCCCTTATATACTGCCA+TGG + Chr5:93922477-93922496 MsG0580029221.01.T01:CDS 50.0%
CTGGGATGGGTATGTTCAGT+TGG + Chr5:93922739-93922758 MsG0580029221.01.T01:intron 50.0%
CTTGCAGTGGAAGAATCCGT+AGG - Chr5:93921004-93921023 None:intergenic 50.0%
GATTACCTTCCACCTGGGAT+GGG + Chr5:93922726-93922745 MsG0580029221.01.T01:CDS 50.0%
GCATGAGATGCTCATTGGCA+GGG + Chr5:93919568-93919587 MsG0580029221.01.T01:intron 50.0%
GCCCATTTCATCTGGCAACA+TGG - Chr5:93922284-93922303 None:intergenic 50.0%
GGTGGTAAGCAACACAACCA+TGG - Chr5:93919183-93919202 None:intergenic 50.0%
GTAATCCTGTGTGCTGCACA+TGG - Chr5:93922712-93922731 None:intergenic 50.0%
GTTCAGTCGACGTGAACAAC+TGG + Chr5:93920771-93920790 MsG0580029221.01.T01:intron 50.0%
TGCATGAGATGCTCATTGGC+AGG + Chr5:93919567-93919586 MsG0580029221.01.T01:intron 50.0%
TGCTCAAGAGGAAAATCCGC+AGG - Chr5:93921089-93921108 None:intergenic 50.0%
TGTCACTCTGTATTTGCGGC+AGG + Chr5:93920583-93920602 MsG0580029221.01.T01:intron 50.0%
TTGCCAGATGAAATGGGCCT+TGG + Chr5:93922286-93922305 MsG0580029221.01.T01:intron 50.0%
! TGGCAAAAAGCGTGTGTGGT+TGG - Chr5:93920377-93920396 None:intergenic 50.0%
!! AGGTGATGGTGCTGCATCAT+TGG + Chr5:93922057-93922076 MsG0580029221.01.T01:intron 50.0%
!! CAAAGGGTTGGTGTTGGTTC+AGG + Chr5:93918981-93919000 MsG0580029221.01.T01:CDS 50.0%
!! GGCTTTTCCTGCGGATTGTT+TGG + Chr5:93921054-93921073 MsG0580029221.01.T01:CDS 50.0%
!! TCTAGTTCTTGTCCTGCTGC+TGG - Chr5:93919204-93919223 None:intergenic 50.0%
ACATACCCATCCCAGGTGGA+AGG - Chr5:93922734-93922753 None:intergenic 55.0%
AGTTCTTGTCCTGCTGCTGG+TGG - Chr5:93919201-93919220 None:intergenic 55.0%
CACTGGAATCGAGCAGCAAC+AGG + Chr5:93919153-93919172 MsG0580029221.01.T01:CDS 55.0%
CTGAACATACCCATCCCAGG+TGG - Chr5:93922738-93922757 None:intergenic 55.0%
CTGCCAAGGCCCATTTCATC+TGG - Chr5:93922292-93922311 None:intergenic 55.0%
CTGTATTTGCGGCAGGTCCA+AGG + Chr5:93920590-93920609 MsG0580029221.01.T01:intron 55.0%
GATGCGGTGAAGCATGCTGA+TGG + Chr5:93921244-93921263 MsG0580029221.01.T01:CDS 55.0%
GCTCGATTCCAGTCCACACA+GGG - Chr5:93919131-93919150 None:intergenic 55.0%
GCTGATCGGTCAACAGACGA+AGG - Chr5:93919255-93919274 None:intergenic 55.0%
GGATTACCTTCCACCTGGGA+TGG + Chr5:93922725-93922744 MsG0580029221.01.T01:CDS 55.0%
GGCAGGTCCAAGGACTATCA+TGG + Chr5:93920600-93920619 MsG0580029221.01.T01:intron 55.0%
GTCACCAATTCGAGGCTAGG+AGG + Chr5:93919494-93919513 MsG0580029221.01.T01:intron 55.0%
TCATACGCAGGCTGCACATG+TGG + Chr5:93918828-93918847 MsG0580029221.01.T01:CDS 55.0%
TGCGGTGAAGCATGCTGATG+GGG + Chr5:93921246-93921265 MsG0580029221.01.T01:CDS 55.0%
TGCTCGATTCCAGTCCACAC+AGG - Chr5:93919132-93919151 None:intergenic 55.0%
TGGTGGGAGAGAGCTTGATG+CGG + Chr5:93921755-93921774 MsG0580029221.01.T01:intron 55.0%
! GCCGTGATGATGATTTCCCG+AGG + Chr5:93919523-93919542 MsG0580029221.01.T01:intron 55.0%
! GCTGAGGGAGTGGTCTCTTT+TGG + Chr5:93919661-93919680 MsG0580029221.01.T01:intron 55.0%
! TGTTGCTTACCACCAGCAGC+AGG + Chr5:93919189-93919208 MsG0580029221.01.T01:CDS 55.0%
AAGCATGCTGATGGGGCTGC+TGG + Chr5:93921253-93921272 MsG0580029221.01.T01:CDS 60.0%
AATGAGGAAGCCACTGGCCC+CGG + Chr5:93919635-93919654 MsG0580029221.01.T01:CDS 60.0%
AGACCACTCCCTCAGCACAC+CGG - Chr5:93919657-93919676 None:intergenic 60.0%
CCTGTGTGCTGCACATGGTC+CGG - Chr5:93922707-93922726 None:intergenic 60.0%
GAGCAGCAACAGGCTCTCCA+TGG + Chr5:93919163-93919182 MsG0580029221.01.T01:CDS 60.0%
GGACTGGAATCGAGCAGCAC+TGG + Chr5:93919136-93919155 MsG0580029221.01.T01:CDS 60.0%
! CGTTGGCGACTGACTCACTG+TGG + Chr5:93921735-93921754 MsG0580029221.01.T01:intron 60.0%
! GGCGACTGACTCACTGTGGT+GGG + Chr5:93921739-93921758 MsG0580029221.01.T01:intron 60.0%
! TGGCGACTGACTCACTGTGG+TGG + Chr5:93921738-93921757 MsG0580029221.01.T01:intron 60.0%
ACCACTCCCTCAGCACACCG+GGG - Chr5:93919655-93919674 None:intergenic 65.0%
AGAGGGCCGACGAGCATCAG+TGG + Chr5:93919453-93919472 MsG0580029221.01.T01:CDS 65.0%
CCGGACCATGTGCAGCACAC+AGG + Chr5:93922704-93922723 MsG0580029221.01.T01:CDS 65.0%
GACCACTCCCTCAGCACACC+GGG - Chr5:93919656-93919675 None:intergenic 65.0%
GCAGGCTGCACATGTGGCGT+TGG + Chr5:93918834-93918853 MsG0580029221.01.T01:CDS 65.0%
GCTGATGGGGCTGCTGGAAG+TGG + Chr5:93921259-93921278 MsG0580029221.01.T01:CDS 65.0%
CACTGGCCCCGGTGTGCTGA+GGG + Chr5:93919646-93919665 MsG0580029221.01.T01:intron 70.0%
CCACTGGCCCCGGTGTGCTG+AGG + Chr5:93919645-93919664 MsG0580029221.01.T01:intron 75.0%
CCTCAGCACACCGGGGCCAG+TGG - Chr5:93919648-93919667 None:intergenic 75.0%
GCCCCGGTGTGCTGAGGGAG+TGG + Chr5:93919651-93919670 MsG0580029221.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 93918551 93923306 93918551 ID=MsG0580029221.01;Name=MsG0580029221.01
Chr5 mRNA 93918551 93923306 93918551 ID=MsG0580029221.01.T01;Parent=MsG0580029221.01;Name=MsG0580029221.01.T01;_AED=0.28;_eAED=0.35;_QI=0|0.22|0.2|0.8|0.88|0.8|10|275|415
Chr5 exon 93918551 93918683 93918551 ID=MsG0580029221.01.T01:exon:18170;Parent=MsG0580029221.01.T01
Chr5 exon 93918755 93919231 93918755 ID=MsG0580029221.01.T01:exon:18171;Parent=MsG0580029221.01.T01
Chr5 exon 93919387 93919483 93919387 ID=MsG0580029221.01.T01:exon:18172;Parent=MsG0580029221.01.T01
Chr5 exon 93919589 93919656 93919589 ID=MsG0580029221.01.T01:exon:18173;Parent=MsG0580029221.01.T01
Chr5 exon 93920954 93921075 93920954 ID=MsG0580029221.01.T01:exon:18174;Parent=MsG0580029221.01.T01
Chr5 exon 93921235 93921298 93921235 ID=MsG0580029221.01.T01:exon:18175;Parent=MsG0580029221.01.T01
Chr5 exon 93922448 93922554 93922448 ID=MsG0580029221.01.T01:exon:18176;Parent=MsG0580029221.01.T01
Chr5 exon 93922651 93922747 93922651 ID=MsG0580029221.01.T01:exon:18177;Parent=MsG0580029221.01.T01
Chr5 exon 93922871 93922966 93922871 ID=MsG0580029221.01.T01:exon:18178;Parent=MsG0580029221.01.T01
Chr5 exon 93923045 93923306 93923045 ID=MsG0580029221.01.T01:exon:18179;Parent=MsG0580029221.01.T01
Chr5 CDS 93918551 93918683 93918551 ID=MsG0580029221.01.T01:cds;Parent=MsG0580029221.01.T01
Chr5 CDS 93918755 93919231 93918755 ID=MsG0580029221.01.T01:cds;Parent=MsG0580029221.01.T01
Chr5 CDS 93919387 93919483 93919387 ID=MsG0580029221.01.T01:cds;Parent=MsG0580029221.01.T01
Chr5 CDS 93919589 93919656 93919589 ID=MsG0580029221.01.T01:cds;Parent=MsG0580029221.01.T01
Chr5 CDS 93920954 93921075 93920954 ID=MsG0580029221.01.T01:cds;Parent=MsG0580029221.01.T01
Chr5 CDS 93921235 93921298 93921235 ID=MsG0580029221.01.T01:cds;Parent=MsG0580029221.01.T01
Chr5 CDS 93922448 93922554 93922448 ID=MsG0580029221.01.T01:cds;Parent=MsG0580029221.01.T01
Chr5 CDS 93922651 93922747 93922651 ID=MsG0580029221.01.T01:cds;Parent=MsG0580029221.01.T01
Chr5 CDS 93922871 93922953 93922871 ID=MsG0580029221.01.T01:cds;Parent=MsG0580029221.01.T01
Chr5 three_prime_UTR 93922954 93922966 93922954 ID=MsG0580029221.01.T01:three_prime_utr;Parent=MsG0580029221.01.T01
Chr5 three_prime_UTR 93923045 93923306 93923045 ID=MsG0580029221.01.T01:three_prime_utr;Parent=MsG0580029221.01.T01
Gene Sequence

>MsG0580029221.01.T01

ATGGTTTCTACTGTTTATGATCTTTGTCATGGTCTTAATCTTCGTGACCCTGTTAAATCTGTTAAGAGCTTGCTCACTAATATTAATTTGGCTTTGGCACCTAAACCTAAACTCGATGCTGATTCTGCTACTAGAAATAAGGCGTGTTCTGATACTTGTATCAGGCATTTTTTGAATGGTTGTAGAACTACATTATCGAAGACGTTTCATACGCAGGCTGCACATGTGGCGTTGGAGTTTTGTAAATTGTTTAGTAGAGTTGGGACTCATGATCCTTTGTATCTTTTTTGTCTTAGTATTTTTGGGGTTTATTTGGAAGCTGCTGAAATTTCACTTGCGGCGTCTGAGGATGAGAATCACAAAGGGTTGGTGTTGGTTCAGGATTTGTTTCCGTTTGTTCATGAACTTGCTGATAGTTTGTTGAGGCATTTGGATTTGAGCATGGAATCCCCTTCCCTTGCTTGTCCTTTGTTGAACAATGTTGAGGATTTTCAAGCTTTTTTAGTCCCTGTGTGGACTGGAATCGAGCAGCACTGGAATCGAGCAGCAACAGGCTCTCCATGGTTGTGTTGCTTACCACCAGCAGCAGGACAAGAACTAGAATGGATTGAAGAGCTCTGTCATGTTTTGATGCGTCAAATGAGTGTGATGTGTCTGATCATCGTTAAATATGCAAAGAGGGCCGACGAGCATCAGTGGATTCTTGAGGGCTGTTCCCGAATCACTATTGCTGGACTGTTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCCGGATTACTTGCGGATTTTCCTGCTGTTTTCGTTTCAAAGAGGACATTTCCTACGGATTCTTCCACTGCAAGAAATCCTCAGGTAACTCTAACTTTTGCTGAGGCTTTTCCTGCGGATTGTTTGGAAGGTTTGGATGCGGTGAAGCATGCTGATGGGGCTGCTGGAAGTGGCAAGATATACTATGAAGGCAATCTAGTAGTGTTGTCATCATTGGCTCGTGCCCTTATATACTGCCATGGAAAGCATGTCATACACAGGGACATTAAACCAGAGAACCTTCTTATTGGTGCACAAGGTAAACTTAAGCTAGCGGACTTTGGATGGTCAGTGCATACATTCAATCGCAGCCGGACCATGTGCAGCACACAGGATTACCTTCCACCTGGGATGGGTGTTAATGTTAAGTGCAGCTACATACATGTTAAAGATTTTGGTAACCAAAGAAAAGAACACCTTGAAGTCTTATGTCTGTGA
Protein sequence

>MsG0580029221.01.T01

MVSTVYDLCHGLNLRDPVKSVKSLLTNINLALAPKPKLDADSATRNKACSDTCIRHFLNGCRTTLSKTFHTQAAHVALEFCKLFSRVGTHDPLYLFCLSIFGVYLEAAEISLAASEDENHKGLVLVQDLFPFVHELADSLLRHLDLSMESPSLACPLLNNVEDFQAFLVPVWTGIEQHWNRAATGSPWLCCLPPAAGQELEWIEELCHVLMRQMSVMCLIIVKYAKRADEHQWILEGCSRITIAGLFMEFKNEEATGPGLLADFPAVFVSKRTFPTDSSTARNPQVTLTFAEAFPADCLEGLDAVKHADGAAGSGKIYYEGNLVVLSSLARALIYCHGKHVIHRDIKPENLLIGAQGKLKLADFGWSVHTFNRSRTMCSTQDYLPPGMGVNVKCSYIHVKDFGNQRKEHLEVLCL*