Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029249.01.T01 | XP_003616690.1 | 98.204 | 167 | 2 | 1 | 1 | 166 | 1 | 167 | 4.14E-118 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029249.01.T01 | Q8LBW3 | 78.947 | 133 | 24 | 1 | 3 | 131 | 5 | 137 | 8.59E-73 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029249.01.T01 | G7K288 | 98.204 | 167 | 2 | 1 | 1 | 166 | 1 | 167 | 1.98e-118 | 340 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580029249.01.T01 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029249.01.T01 | MTR_5g083230 | 98.204 | 167 | 2 | 1 | 1 | 166 | 1 | 167 | 5.01e-122 | 340 |
| MsG0580029249.01.T01 | MTR_3g071590 | 73.171 | 164 | 35 | 4 | 1 | 160 | 1 | 159 | 2.03e-80 | 235 |
| MsG0580029249.01.T01 | MTR_3g031660 | 65.909 | 176 | 44 | 5 | 1 | 160 | 1 | 176 | 9.92e-73 | 216 |
| MsG0580029249.01.T01 | MTR_4g083680 | 56.098 | 164 | 61 | 1 | 2 | 165 | 11 | 163 | 1.63e-58 | 180 |
| MsG0580029249.01.T01 | MTR_2g068760 | 76.364 | 110 | 26 | 0 | 2 | 111 | 9 | 118 | 1.91e-58 | 179 |
| MsG0580029249.01.T01 | MTR_2g093310 | 62.832 | 113 | 42 | 0 | 5 | 117 | 32 | 144 | 9.34e-51 | 161 |
| MsG0580029249.01.T01 | MTR_7g033800 | 53.020 | 149 | 66 | 1 | 4 | 148 | 9 | 157 | 2.03e-50 | 160 |
| MsG0580029249.01.T01 | MTR_4g105170 | 52.532 | 158 | 58 | 1 | 4 | 144 | 9 | 166 | 2.24e-50 | 160 |
| MsG0580029249.01.T01 | MTR_3g077240 | 71.154 | 104 | 30 | 0 | 4 | 107 | 8 | 111 | 4.31e-50 | 159 |
| MsG0580029249.01.T01 | MTR_4g060950 | 64.035 | 114 | 40 | 1 | 5 | 117 | 23 | 136 | 1.79e-49 | 158 |
| MsG0580029249.01.T01 | MTR_5g083960 | 60.504 | 119 | 47 | 0 | 1 | 119 | 34 | 152 | 1.07e-48 | 156 |
| MsG0580029249.01.T01 | MTR_6g005070 | 57.377 | 122 | 52 | 0 | 4 | 125 | 7 | 128 | 1.56e-48 | 154 |
| MsG0580029249.01.T01 | MTR_1g095850 | 64.865 | 111 | 39 | 0 | 7 | 117 | 73 | 183 | 5.51e-48 | 155 |
| MsG0580029249.01.T01 | MTR_3g094690 | 69.903 | 103 | 31 | 0 | 5 | 107 | 46 | 148 | 1.31e-47 | 154 |
| MsG0580029249.01.T01 | MTR_6g005080 | 49.315 | 146 | 63 | 1 | 4 | 149 | 8 | 142 | 2.56e-47 | 150 |
| MsG0580029249.01.T01 | MTR_3g073690 | 61.207 | 116 | 44 | 1 | 5 | 120 | 8 | 122 | 1.99e-46 | 150 |
| MsG0580029249.01.T01 | MTR_3g094690 | 68.932 | 103 | 31 | 1 | 5 | 107 | 46 | 147 | 5.01e-45 | 148 |
| MsG0580029249.01.T01 | MTR_5g017950 | 59.200 | 125 | 50 | 1 | 4 | 127 | 6 | 130 | 6.41e-45 | 150 |
| MsG0580029249.01.T01 | MTR_3g071420 | 67.000 | 100 | 33 | 0 | 4 | 103 | 12 | 111 | 6.30e-44 | 144 |
| MsG0580029249.01.T01 | MTR_3g452660 | 62.136 | 103 | 39 | 0 | 4 | 106 | 5 | 107 | 6.97e-44 | 147 |
| MsG0580029249.01.T01 | MTR_5g075020 | 68.932 | 103 | 32 | 0 | 5 | 107 | 42 | 144 | 2.27e-43 | 144 |
| MsG0580029249.01.T01 | MTR_5g075020 | 68.932 | 103 | 32 | 0 | 5 | 107 | 46 | 148 | 4.07e-43 | 143 |
| MsG0580029249.01.T01 | MTR_5g083010 | 63.366 | 101 | 37 | 0 | 3 | 103 | 8 | 108 | 6.23e-42 | 138 |
| MsG0580029249.01.T01 | MTR_8g040900 | 63.551 | 107 | 39 | 0 | 4 | 110 | 5 | 111 | 1.67e-41 | 139 |
| MsG0580029249.01.T01 | MTR_5g093010 | 52.294 | 109 | 52 | 0 | 7 | 115 | 6 | 114 | 9.67e-39 | 129 |
| MsG0580029249.01.T01 | MTR_7g096530 | 56.604 | 106 | 45 | 1 | 2 | 106 | 10 | 115 | 1.93e-38 | 130 |
| MsG0580029249.01.T01 | MTR_1g070220 | 59.406 | 101 | 40 | 1 | 6 | 105 | 15 | 115 | 1.10e-37 | 128 |
| MsG0580029249.01.T01 | MTR_8g036105 | 52.846 | 123 | 54 | 2 | 3 | 121 | 15 | 137 | 1.64e-37 | 128 |
| MsG0580029249.01.T01 | MTR_7g028905 | 50.450 | 111 | 55 | 0 | 5 | 115 | 4 | 114 | 4.80e-37 | 124 |
| MsG0580029249.01.T01 | MTR_7g075230 | 45.455 | 165 | 78 | 5 | 3 | 164 | 9 | 164 | 9.45e-37 | 125 |
| MsG0580029249.01.T01 | MTR_8g036085 | 55.882 | 102 | 44 | 1 | 6 | 106 | 23 | 124 | 8.32e-36 | 124 |
| MsG0580029249.01.T01 | MTR_7g074990 | 57.843 | 102 | 42 | 1 | 6 | 106 | 20 | 121 | 9.44e-36 | 124 |
| MsG0580029249.01.T01 | MTR_7g096610 | 47.143 | 140 | 62 | 4 | 2 | 130 | 4 | 142 | 1.21e-34 | 121 |
| MsG0580029249.01.T01 | MTR_5g080470 | 42.177 | 147 | 72 | 3 | 2 | 140 | 3 | 144 | 2.61e-33 | 117 |
| MsG0580029249.01.T01 | MTR_1g070205 | 56.701 | 97 | 39 | 2 | 6 | 100 | 12 | 107 | 6.06e-33 | 117 |
| MsG0580029249.01.T01 | MTR_6g027710 | 49.038 | 104 | 52 | 1 | 5 | 107 | 39 | 142 | 4.68e-32 | 114 |
| MsG0580029249.01.T01 | MTR_8g079660 | 48.515 | 101 | 52 | 0 | 6 | 106 | 8 | 108 | 1.67e-30 | 111 |
| MsG0580029249.01.T01 | MTR_8g079580 | 48.544 | 103 | 52 | 1 | 6 | 107 | 8 | 110 | 6.96e-29 | 106 |
| MsG0580029249.01.T01 | MTR_8g079620 | 45.545 | 101 | 55 | 0 | 6 | 106 | 8 | 108 | 1.60e-28 | 105 |
| MsG0580029249.01.T01 | MTR_6g027700 | 46.535 | 101 | 53 | 1 | 6 | 105 | 7 | 107 | 2.04e-28 | 104 |
| MsG0580029249.01.T01 | MTR_6g011250 | 40.351 | 114 | 67 | 1 | 1 | 113 | 4 | 117 | 4.21e-27 | 100 |
| MsG0580029249.01.T01 | MTR_4g107450 | 43.220 | 118 | 66 | 1 | 2 | 118 | 6 | 123 | 2.62e-24 | 96.3 |
| MsG0580029249.01.T01 | MTR_6g011230 | 41.935 | 93 | 54 | 0 | 7 | 99 | 12 | 104 | 3.07e-24 | 94.0 |
| MsG0580029249.01.T01 | MTR_6g011200 | 44.578 | 83 | 45 | 1 | 4 | 85 | 7 | 89 | 5.11e-23 | 92.0 |
| MsG0580029249.01.T01 | MTR_2g100020 | 35.238 | 105 | 68 | 0 | 2 | 106 | 15 | 119 | 5.02e-21 | 87.0 |
| MsG0580029249.01.T01 | MTR_4g099230 | 40.426 | 94 | 51 | 2 | 7 | 95 | 3 | 96 | 9.34e-21 | 83.6 |
| MsG0580029249.01.T01 | MTR_8g017090 | 31.159 | 138 | 95 | 0 | 7 | 144 | 13 | 150 | 9.56e-20 | 84.0 |
| MsG0580029249.01.T01 | MTR_4g088035 | 39.080 | 87 | 53 | 0 | 7 | 93 | 7 | 93 | 3.07e-19 | 82.0 |
| MsG0580029249.01.T01 | MTR_5g085390 | 39.759 | 83 | 49 | 1 | 4 | 85 | 7 | 89 | 6.95e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029249.01.T01 | AT2G30130 | 78.947 | 133 | 24 | 1 | 3 | 131 | 5 | 137 | 8.76e-74 | 219 |
| MsG0580029249.01.T01 | AT1G31320 | 70.940 | 117 | 34 | 0 | 2 | 118 | 9 | 125 | 3.26e-52 | 164 |
| MsG0580029249.01.T01 | AT2G28500 | 55.714 | 140 | 61 | 1 | 5 | 144 | 54 | 192 | 7.97e-52 | 165 |
| MsG0580029249.01.T01 | AT1G07900 | 59.091 | 132 | 53 | 1 | 5 | 136 | 32 | 162 | 2.67e-51 | 162 |
| MsG0580029249.01.T01 | AT1G16530 | 70.093 | 107 | 31 | 1 | 5 | 110 | 13 | 119 | 1.52e-50 | 160 |
| MsG0580029249.01.T01 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.42e-49 | 158 |
| MsG0580029249.01.T01 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.42e-49 | 158 |
| MsG0580029249.01.T01 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.42e-49 | 158 |
| MsG0580029249.01.T01 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.42e-49 | 158 |
| MsG0580029249.01.T01 | AT3G27650 | 67.308 | 104 | 34 | 0 | 4 | 107 | 37 | 140 | 1.17e-48 | 155 |
| MsG0580029249.01.T01 | AT2G30340 | 60.504 | 119 | 47 | 0 | 5 | 123 | 51 | 169 | 3.91e-47 | 154 |
| MsG0580029249.01.T01 | AT2G30340 | 60.504 | 119 | 47 | 0 | 5 | 123 | 52 | 170 | 4.77e-47 | 154 |
| MsG0580029249.01.T01 | AT2G23660 | 57.265 | 117 | 49 | 1 | 4 | 120 | 3 | 118 | 1.94e-45 | 151 |
| MsG0580029249.01.T01 | AT2G23660 | 57.265 | 117 | 49 | 1 | 4 | 120 | 3 | 118 | 1.94e-45 | 151 |
| MsG0580029249.01.T01 | AT2G23660 | 57.265 | 117 | 49 | 1 | 4 | 120 | 3 | 118 | 1.94e-45 | 151 |
| MsG0580029249.01.T01 | AT2G40470 | 70.874 | 103 | 30 | 0 | 5 | 107 | 19 | 121 | 3.64e-45 | 147 |
| MsG0580029249.01.T01 | AT2G40470 | 70.874 | 103 | 30 | 0 | 5 | 107 | 44 | 146 | 5.55e-45 | 147 |
| MsG0580029249.01.T01 | AT5G66870 | 64.078 | 103 | 37 | 0 | 4 | 106 | 5 | 107 | 7.05e-44 | 147 |
| MsG0580029249.01.T01 | AT3G26660 | 59.091 | 110 | 45 | 0 | 7 | 116 | 6 | 115 | 1.61e-43 | 140 |
| MsG0580029249.01.T01 | AT3G26620 | 59.091 | 110 | 45 | 0 | 7 | 116 | 6 | 115 | 2.05e-43 | 140 |
| MsG0580029249.01.T01 | AT3G11090 | 58.621 | 116 | 47 | 1 | 4 | 118 | 9 | 124 | 1.26e-41 | 137 |
| MsG0580029249.01.T01 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.80e-41 | 137 |
| MsG0580029249.01.T01 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.80e-41 | 137 |
| MsG0580029249.01.T01 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.80e-41 | 137 |
| MsG0580029249.01.T01 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.80e-41 | 137 |
| MsG0580029249.01.T01 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.80e-41 | 137 |
| MsG0580029249.01.T01 | AT4G00210 | 45.283 | 159 | 70 | 3 | 2 | 159 | 7 | 149 | 2.28e-37 | 128 |
| MsG0580029249.01.T01 | AT2G42430 | 56.604 | 106 | 45 | 1 | 2 | 106 | 11 | 116 | 5.92e-37 | 127 |
| MsG0580029249.01.T01 | AT2G45410 | 50.388 | 129 | 60 | 2 | 9 | 133 | 19 | 147 | 1.91e-36 | 125 |
| MsG0580029249.01.T01 | AT3G03760 | 54.808 | 104 | 46 | 1 | 5 | 107 | 50 | 153 | 3.16e-36 | 126 |
| MsG0580029249.01.T01 | AT2G42440 | 47.143 | 140 | 64 | 4 | 2 | 139 | 3 | 134 | 4.81e-35 | 122 |
| MsG0580029249.01.T01 | AT2G31310 | 45.455 | 143 | 66 | 4 | 1 | 132 | 1 | 142 | 7.87e-35 | 120 |
| MsG0580029249.01.T01 | AT2G45420 | 52.885 | 104 | 48 | 1 | 9 | 111 | 40 | 143 | 7.25e-34 | 120 |
| MsG0580029249.01.T01 | AT4G00220 | 53.846 | 104 | 47 | 1 | 9 | 111 | 20 | 123 | 1.43e-33 | 118 |
| MsG0580029249.01.T01 | AT3G58190 | 48.031 | 127 | 58 | 3 | 6 | 130 | 11 | 131 | 2.66e-33 | 117 |
| MsG0580029249.01.T01 | AT5G06080 | 52.727 | 110 | 46 | 2 | 5 | 113 | 6 | 110 | 9.98e-32 | 112 |
| MsG0580029249.01.T01 | AT3G50510 | 47.573 | 103 | 54 | 0 | 4 | 106 | 10 | 112 | 2.74e-30 | 109 |
| MsG0580029249.01.T01 | AT3G50510 | 47.573 | 103 | 54 | 0 | 4 | 106 | 10 | 112 | 2.74e-30 | 109 |
| MsG0580029249.01.T01 | AT5G35900 | 42.718 | 103 | 59 | 0 | 7 | 109 | 6 | 108 | 2.03e-25 | 97.1 |
| MsG0580029249.01.T01 | AT1G72980 | 39.130 | 115 | 69 | 1 | 2 | 115 | 9 | 123 | 1.84e-23 | 92.4 |
| MsG0580029249.01.T01 | AT3G47870 | 36.190 | 105 | 67 | 0 | 2 | 106 | 32 | 136 | 3.85e-23 | 93.6 |
| MsG0580029249.01.T01 | AT3G13850 | 38.947 | 95 | 58 | 0 | 7 | 101 | 37 | 131 | 9.18e-22 | 89.0 |
| MsG0580029249.01.T01 | AT1G06280 | 45.455 | 77 | 42 | 0 | 7 | 83 | 25 | 101 | 2.01e-19 | 81.6 |
| MsG0580029249.01.T01 | AT2G19820 | 37.079 | 89 | 55 | 1 | 5 | 92 | 11 | 99 | 1.33e-16 | 72.0 |
| MsG0580029249.01.T01 | AT4G22700 | 36.634 | 101 | 62 | 2 | 7 | 106 | 6 | 105 | 8.90e-16 | 71.6 |
| MsG0580029249.01.T01 | AT5G15060 | 43.243 | 74 | 38 | 2 | 7 | 77 | 18 | 90 | 5.29e-14 | 65.9 |
| MsG0580029249.01.T01 | AT1G36000 | 29.348 | 92 | 65 | 0 | 1 | 92 | 4 | 95 | 8.19e-13 | 62.0 |
| MsG0580029249.01.T01 | AT2G19510 | 27.174 | 92 | 67 | 0 | 1 | 92 | 4 | 95 | 7.75e-11 | 57.0 |
Find 21 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCTGCTCTTTGGTGAAT+TGG | 0.247897 | 5:-94266953 | None:intergenic |
| CTCACTCAATACCTTAATTA+TGG | 0.252400 | 5:+94267193 | MsG0580029249.01.T01:CDS |
| TGTGAACTATGGCAAACTTT+TGG | 0.274301 | 5:-94266108 | None:intergenic |
| CATCTGCTCTTTGGTGAATT+GGG | 0.326240 | 5:-94266952 | None:intergenic |
| TAGAAGAAGAACCATAATTA+AGG | 0.338211 | 5:-94267204 | None:intergenic |
| TGTTCACTGCATCTGCTCTT+TGG | 0.348086 | 5:-94266961 | None:intergenic |
| TATAGTAAGATTTCTGATCT+TGG | 0.371111 | 5:-94267159 | None:intergenic |
| GCTCCAACACAGCCATAAAC+TGG | 0.374722 | 5:-94267019 | None:intergenic |
| TAATATGTATGGACATGATA+TGG | 0.378652 | 5:+94267261 | MsG0580029249.01.T01:CDS |
| AGAGTGAGGGATCCAGTTTA+TGG | 0.403662 | 5:+94267007 | MsG0580029249.01.T01:CDS |
| TCTTGGTTGATTTGTGGTGT+TGG | 0.412347 | 5:-94267142 | None:intergenic |
| GGTTCATGAGAAGGAAAATA+AGG | 0.413213 | 5:-94266085 | None:intergenic |
| CAATGTTAGCAAAATGTTGC+AGG | 0.415314 | 5:+94266147 | MsG0580029249.01.T01:CDS |
| CTTAAGAGAGATAATATGTA+TGG | 0.442326 | 5:+94267250 | MsG0580029249.01.T01:CDS |
| TTCTGATCTTGGTTGATTTG+TGG | 0.443495 | 5:-94267148 | None:intergenic |
| GATCCAGTTTATGGCTGTGT+TGG | 0.485932 | 5:+94267016 | MsG0580029249.01.T01:CDS |
| AAAGTTTGCCATAGTTCACA+AGG | 0.602163 | 5:+94266111 | MsG0580029249.01.T01:CDS |
| AGAAGGAAAATAAGGAGCAA+AGG | 0.607624 | 5:-94266077 | None:intergenic |
| ATGAAGCAAATGCAAGAGTG+AGG | 0.619290 | 5:+94266993 | MsG0580029249.01.T01:CDS |
| AGAAGCTTGCATGAAGCACA+TGG | 0.628381 | 5:-94266028 | None:intergenic |
| TGAAGCAAATGCAAGAGTGA+GGG | 0.632506 | 5:+94266994 | MsG0580029249.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACTAATCATTAGAA+AGG | - | Chr5:94266643-94266662 | None:intergenic | 15.0% |
| !! | AGTTTGTGAATAAAATATTT+GGG | + | Chr5:94266331-94266350 | MsG0580029249.01.T01:intron | 15.0% |
| !!! | ATAAATTTTTTGTTTGAATC+AGG | + | Chr5:94266925-94266944 | MsG0580029249.01.T01:intron | 15.0% |
| !!! | TAGTTTGTGAATAAAATATT+TGG | + | Chr5:94266330-94266349 | MsG0580029249.01.T01:intron | 15.0% |
| !!! | TTTTTTATGTTTCTTACTTT+AGG | - | Chr5:94266431-94266450 | None:intergenic | 15.0% |
| !! | AAACACTTAAAAAAAGTAAG+AGG | - | Chr5:94266175-94266194 | None:intergenic | 20.0% |
| !! | TAAGTGTTTATTATTGTTCA+AGG | + | Chr5:94266685-94266704 | MsG0580029249.01.T01:intron | 20.0% |
| !! | TAATAGTAAACAGCTAAAAA+AGG | - | Chr5:94266489-94266508 | None:intergenic | 20.0% |
| !! | TGTTTACTATTATAGTTATG+AGG | + | Chr5:94266497-94266516 | MsG0580029249.01.T01:intron | 20.0% |
| !!! | TACTTTCTTTGATGATTAAA+GGG | + | Chr5:94266199-94266218 | MsG0580029249.01.T01:intron | 20.0% |
| !!! | TTACTTTCTTTGATGATTAA+AGG | + | Chr5:94266198-94266217 | MsG0580029249.01.T01:intron | 20.0% |
| !!! | TTATCTTTTGTACTTATGTT+TGG | + | Chr5:94266289-94266308 | MsG0580029249.01.T01:intron | 20.0% |
| ! | ACAAAAAACACAATCAAATG+TGG | - | Chr5:94266574-94266593 | None:intergenic | 25.0% |
| ! | CTTAAGAGAGATAATATGTA+TGG | + | Chr5:94267250-94267269 | MsG0580029249.01.T01:CDS | 25.0% |
| ! | TAATATGTATGGACATGATA+TGG | + | Chr5:94267261-94267280 | MsG0580029249.01.T01:CDS | 25.0% |
| ! | TAGAAGAAGAACCATAATTA+AGG | - | Chr5:94267207-94267226 | None:intergenic | 25.0% |
| ! | TATAGTAAGATTTCTGATCT+TGG | - | Chr5:94267162-94267181 | None:intergenic | 25.0% |
| !!! | TTCTTACTTTAGGATGTTTT+AGG | - | Chr5:94266421-94266440 | None:intergenic | 25.0% |
| !!! | TTTTTTTATGCGGACAATTA+GGG | - | Chr5:94266763-94266782 | None:intergenic | 25.0% |
| !!! | TTTTTTTTATGCGGACAATT+AGG | - | Chr5:94266764-94266783 | None:intergenic | 25.0% |
| AAGAACACAACAATTGATCA+CGG | - | Chr5:94266828-94266847 | None:intergenic | 30.0% | |
| ATTATAGTTATGAGGAGTTG+AGG | + | Chr5:94266505-94266524 | MsG0580029249.01.T01:intron | 30.0% | |
| CTCACTCAATACCTTAATTA+TGG | + | Chr5:94267193-94267212 | MsG0580029249.01.T01:CDS | 30.0% | |
| CTCTATTGTTGAAGACATAT+TGG | + | Chr5:94266795-94266814 | MsG0580029249.01.T01:intron | 30.0% | |
| !! | GTAGAATCAGACTTGTTATT+CGG | + | Chr5:94266866-94266885 | MsG0580029249.01.T01:intron | 30.0% |
| AAAGTTTGCCATAGTTCACA+AGG | + | Chr5:94266111-94266130 | MsG0580029249.01.T01:CDS | 35.0% | |
| ACCAAAAACCTTGTGAACTA+TGG | - | Chr5:94266122-94266141 | None:intergenic | 35.0% | |
| AGAAGGAAAATAAGGAGCAA+AGG | - | Chr5:94266080-94266099 | None:intergenic | 35.0% | |
| CAATGTTAGCAAAATGTTGC+AGG | + | Chr5:94266147-94266166 | MsG0580029249.01.T01:CDS | 35.0% | |
| CACAAACTATTCAACCTACA+AGG | - | Chr5:94266319-94266338 | None:intergenic | 35.0% | |
| GGTTCATGAGAAGGAAAATA+AGG | - | Chr5:94266088-94266107 | None:intergenic | 35.0% | |
| GTTAATGATTGCAATACGAG+AGG | + | Chr5:94266603-94266622 | MsG0580029249.01.T01:intron | 35.0% | |
| ! | GTGAACTATGGCAAACTTTT+GGG | - | Chr5:94266110-94266129 | None:intergenic | 35.0% |
| ! | TGAACTATGGCAAACTTTTG+GGG | - | Chr5:94266109-94266128 | None:intergenic | 35.0% |
| ! | TGTGAACTATGGCAAACTTT+TGG | - | Chr5:94266111-94266130 | None:intergenic | 35.0% |
| ! | TTATGTTTGGTTCACCTTGT+AGG | + | Chr5:94266302-94266321 | MsG0580029249.01.T01:intron | 35.0% |
| !! | TTCTGATCTTGGTTGATTTG+TGG | - | Chr5:94267151-94267170 | None:intergenic | 35.0% |
| ACAACAATTGATCACGGAGT+TGG | - | Chr5:94266822-94266841 | None:intergenic | 40.0% | |
| ATAGTTATGAGGAGTTGAGG+AGG | + | Chr5:94266508-94266527 | MsG0580029249.01.T01:intron | 40.0% | |
| ATGAAGCAAATGCAAGAGTG+AGG | + | Chr5:94266993-94267012 | MsG0580029249.01.T01:CDS | 40.0% | |
| CAACAATTGATCACGGAGTT+GGG | - | Chr5:94266821-94266840 | None:intergenic | 40.0% | |
| CATCTGCTCTTTGGTGAATT+GGG | - | Chr5:94266955-94266974 | None:intergenic | 40.0% | |
| TGAAGCAAATGCAAGAGTGA+GGG | + | Chr5:94266994-94267013 | MsG0580029249.01.T01:CDS | 40.0% | |
| ! | CATTTTGCATCTGGATGCAT+AGG | - | Chr5:94267111-94267130 | None:intergenic | 40.0% |
| ! | GCCATAGTTCACAAGGTTTT+TGG | + | Chr5:94266118-94266137 | MsG0580029249.01.T01:CDS | 40.0% |
| ! | GGGTTAGAGAGTACAAAACT+TGG | - | Chr5:94266743-94266762 | None:intergenic | 40.0% |
| ! | TCACTTGCTCATTTTGCATC+TGG | - | Chr5:94267120-94267139 | None:intergenic | 40.0% |
| !! | TCTTGGTTGATTTGTGGTGT+TGG | - | Chr5:94267145-94267164 | None:intergenic | 40.0% |
| !!! | AACTTTTGGGGTTCATGAGA+AGG | - | Chr5:94266097-94266116 | None:intergenic | 40.0% |
| AGAAGCTTGCATGAAGCACA+TGG | - | Chr5:94266031-94266050 | None:intergenic | 45.0% | |
| AGAGTGAGGGATCCAGTTTA+TGG | + | Chr5:94267007-94267026 | MsG0580029249.01.T01:CDS | 45.0% | |
| GATCCAGTTTATGGCTGTGT+TGG | + | Chr5:94267016-94267035 | MsG0580029249.01.T01:CDS | 45.0% | |
| GCATCTGCTCTTTGGTGAAT+TGG | - | Chr5:94266956-94266975 | None:intergenic | 45.0% | |
| TGTTCACTGCATCTGCTCTT+TGG | - | Chr5:94266964-94266983 | None:intergenic | 45.0% | |
| TTGCGACACAATCACGATTG+AGG | + | Chr5:94266539-94266558 | MsG0580029249.01.T01:intron | 45.0% | |
| !!! | ATTTTTTTTTTTTTTTTATG+CGG | - | Chr5:94266773-94266792 | None:intergenic | 5.0% |
| GCTCCAACACAGCCATAAAC+TGG | - | Chr5:94267022-94267041 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 94266013 | 94267291 | 94266013 | ID=MsG0580029249.01;Name=MsG0580029249.01 |
| Chr5 | mRNA | 94266013 | 94267291 | 94266013 | ID=MsG0580029249.01.T01;Parent=MsG0580029249.01;Name=MsG0580029249.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|166 |
| Chr5 | exon | 94266013 | 94266168 | 94266013 | ID=MsG0580029249.01.T01:exon:26719;Parent=MsG0580029249.01.T01 |
| Chr5 | exon | 94266947 | 94267291 | 94266947 | ID=MsG0580029249.01.T01:exon:26720;Parent=MsG0580029249.01.T01 |
| Chr5 | CDS | 94266013 | 94266168 | 94266013 | ID=MsG0580029249.01.T01:cds;Parent=MsG0580029249.01.T01 |
| Chr5 | CDS | 94266947 | 94267291 | 94266947 | ID=MsG0580029249.01.T01:cds;Parent=MsG0580029249.01.T01 |
| Gene Sequence |
| Protein sequence |
