AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029534.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029534.01.T01 MTR_5g088060 75.649 501 59 7 172 665 17 461 0.0 686
MsG0580029534.01.T01 MTR_5g088060 87.429 175 15 1 4 171 1 175 2.16e-97 307
MsG0580029534.01.T01 MTR_5g488160 75.649 501 59 7 172 665 17 461 0.0 686
MsG0580029534.01.T01 MTR_5g488160 87.429 175 15 1 4 171 1 175 2.16e-97 307
MsG0580029534.01.T01 MTR_5g088010 88.933 253 18 4 419 665 1 249 1.45e-146 426
MsG0580029534.01.T01 MTR_5g088200 81.152 191 23 4 172 350 31 220 2.21e-89 298
MsG0580029534.01.T01 MTR_5g088200 68.720 211 15 4 12 171 23 233 3.43e-74 256
MsG0580029534.01.T01 MTR_5g027570 65.957 235 65 7 390 613 1 231 9.52e-85 266
MsG0580029534.01.T01 MTR_5g088005 81.935 155 15 1 8 162 12 153 2.20e-78 247
MsG0580029534.01.T01 MTR_5g088005 64.444 180 16 3 172 350 24 156 2.79e-61 202
MsG0580029534.01.T01 MTR_5g027770 47.107 363 82 10 1 324 19 310 1.88e-71 234
MsG0580029534.01.T01 MTR_5g027770 56.098 82 22 3 403 478 98 171 8.38e-15 76.3
MsG0580029534.01.T01 MTR_5g027550 49.141 291 71 9 390 665 1 229 2.06e-58 197
MsG0580029534.01.T01 MTR_5g027780 51.429 140 16 3 172 311 40 127 1.54e-27 110
MsG0580029534.01.T01 MTR_5g027780 50.420 119 24 2 16 126 36 127 4.49e-21 91.7
MsG0580029534.01.T01 MTR_8g063600 58.228 79 31 2 471 548 103 180 3.91e-22 97.4
MsG0580029534.01.T01 MTR_8g063870 51.064 94 45 1 455 548 74 166 5.85e-22 96.7
MsG0580029534.01.T01 MTR_5g069710 58.228 79 29 2 475 552 134 209 1.02e-21 96.7
MsG0580029534.01.T01 MTR_3g462790 56.627 83 32 2 475 556 149 228 1.36e-21 96.7
MsG0580029534.01.T01 MTR_7g067080 46.087 115 48 3 475 587 142 244 5.90e-21 94.7
MsG0580029534.01.T01 MTR_5g081860 37.433 187 94 8 370 541 14 192 6.23e-21 93.6
MsG0580029534.01.T01 MTR_1g111830 62.687 67 22 1 475 541 126 189 7.91e-21 92.8
MsG0580029534.01.T01 MTR_4g111975 53.846 78 31 3 471 546 135 209 1.32e-19 90.5
MsG0580029534.01.T01 MTR_1g048660 55.556 72 29 1 475 546 14 82 1.94e-18 81.3
MsG0580029534.01.T01 MTR_5g075760 42.241 116 64 2 430 545 64 176 2.96e-18 84.3
MsG0580029534.01.T01 MTR_3g104370 48.571 70 36 0 475 544 93 162 3.30e-18 84.7
MsG0580029534.01.T01 MTR_2g100930 53.846 65 27 1 475 539 111 172 2.68e-17 84.3
MsG0580029534.01.T01 MTR_4g100630 51.515 66 27 2 475 539 97 158 2.22e-16 81.3
MsG0580029534.01.T01 MTR_4g015130 56.667 60 23 1 483 542 3 59 2.43e-16 74.7
MsG0580029534.01.T01 MTR_8g101650 65.217 46 16 0 475 520 107 152 1.04e-15 78.6
MsG0580029534.01.T01 MTR_6g092540 52.308 65 28 1 475 539 99 160 1.17e-15 78.6
MsG0580029534.01.T01 MTR_5g037080 67.391 46 15 0 475 520 104 149 1.18e-15 79.0
MsG0580029534.01.T01 MTR_4g107230 68.889 45 14 0 475 519 86 130 1.60e-15 78.2
MsG0580029534.01.T01 MTR_5g075790 39.200 125 54 3 430 545 73 184 1.80e-15 76.6
MsG0580029534.01.T01 MTR_1g083180 39.683 126 55 7 441 548 13 135 6.13e-15 73.9
MsG0580029534.01.T01 MTR_3g070110 52.778 72 30 2 474 541 96 167 3.05e-14 72.8
MsG0580029534.01.T01 MTR_2g090305 35.714 98 58 2 475 570 30 124 4.10e-14 71.6
MsG0580029534.01.T01 MTR_0036s0260 40.260 77 43 1 475 551 30 103 1.48e-13 70.5
MsG0580029534.01.T01 MTR_1g033620 55.932 59 22 2 489 546 21 76 1.81e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029534.01.T01 AT5G58900 41.176 136 64 3 475 605 143 267 3.35e-23 100
MsG0580029534.01.T01 AT5G04760 60.526 76 27 1 466 541 92 164 3.50e-22 95.9
MsG0580029534.01.T01 AT5G08520 56.790 81 31 2 471 550 115 192 3.77e-22 97.8
MsG0580029534.01.T01 AT5G01200 61.429 70 23 2 475 543 148 214 6.17e-21 93.6
MsG0580029534.01.T01 AT2G38090 57.692 78 28 3 468 543 135 209 2.41e-20 92.4
MsG0580029534.01.T01 AT1G49010 53.659 82 33 3 471 550 131 209 9.89e-20 91.3
MsG0580029534.01.T01 AT5G61620 43.651 126 51 5 467 584 101 214 5.23e-19 89.0
MsG0580029534.01.T01 AT3G11280 43.443 122 50 5 475 585 129 242 3.82e-18 85.5
MsG0580029534.01.T01 AT3G11280 43.443 122 50 5 475 585 129 242 3.82e-18 85.5
MsG0580029534.01.T01 AT5G23650 52.632 76 33 1 475 550 122 194 7.40e-18 85.9
MsG0580029534.01.T01 AT3G10580 39.552 134 63 5 462 585 77 202 1.46e-17 83.6
MsG0580029534.01.T01 AT3G10580 38.028 142 70 5 462 593 77 210 1.82e-17 84.0
MsG0580029534.01.T01 AT5G05790 55.000 80 28 3 471 545 128 204 3.68e-17 82.8
MsG0580029534.01.T01 AT5G05790 55.000 80 28 3 471 545 128 204 3.68e-17 82.8
MsG0580029534.01.T01 AT5G47390 45.745 94 44 4 475 565 98 187 4.76e-17 84.0
MsG0580029534.01.T01 AT1G70000 67.391 46 15 0 475 520 100 145 3.17e-16 79.7
MsG0580029534.01.T01 AT1G70000 67.391 46 15 0 475 520 100 145 3.17e-16 79.7
MsG0580029534.01.T01 AT5G56840 55.172 58 26 0 475 532 93 150 3.20e-16 79.0
MsG0580029534.01.T01 AT4G09450 54.412 68 28 1 475 542 93 157 5.35e-16 77.4
MsG0580029534.01.T01 AT1G74840 68.889 45 14 0 475 519 98 142 2.32e-15 76.6
MsG0580029534.01.T01 AT3G16350 65.217 46 16 0 475 520 139 184 2.45e-15 79.0
MsG0580029534.01.T01 AT1G74840 68.889 45 14 0 475 519 98 142 3.56e-15 76.6
MsG0580029534.01.T01 AT1G19000 68.889 45 14 0 475 519 104 148 5.18e-15 76.6
MsG0580029534.01.T01 AT1G19000 68.889 45 14 0 475 519 104 148 5.18e-15 76.6
MsG0580029534.01.T01 AT3G10590 50.000 68 30 2 475 542 113 176 2.50e-12 67.0

Find 180 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCATATCTTTCACATTT+TGG 0.099316 5:-98221397 None:intergenic
TAATTCAAATTGGATGAAAT+TGG 0.215519 5:+98220726 MsG0580029534.01.T01:CDS
TCAACATGATTCATAGGTTT+TGG 0.219569 5:-98218582 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 5:-98219414 None:intergenic
CCTGCTGCTGCCGGGGATAC+AGG 0.238979 5:-98219186 None:intergenic
TTTGGTGGATAAAGTACTTT+TGG 0.240572 5:-98221379 None:intergenic
CTGTCCAATGCCCTTTCCTT+GGG 0.257949 5:-98221026 None:intergenic
TCCTATAGCTCCTTCTGTTC+AGG 0.275418 5:+98219470 MsG0580029534.01.T01:CDS
CCTGCTGCCGCCGGGGATAC+AGG 0.277402 5:-98220111 None:intergenic
CTTGGGGCATGACTTTCTTC+TGG 0.281577 5:-98221009 None:intergenic
TCCTAGAGCTCCTTCTGTTC+AGG 0.288148 5:+98218638 MsG0580029534.01.T01:CDS
TTCTCAAGTTTGTTCATATC+AGG 0.295923 5:-98221779 None:intergenic
TCTGTCCAATGCCCTTTCCT+TGG 0.314383 5:-98221027 None:intergenic
CTGAACATGTTTGGCATCAT+TGG 0.316454 5:-98219235 None:intergenic
TATTTGAAGAAAAGTAATTA+TGG 0.325126 5:+98218449 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.327654 5:-98219420 None:intergenic
TATGCTTTCCCACCTGGTTC+AGG 0.329227 5:+98220060 MsG0580029534.01.T01:CDS
CCATTTGTGTTGTTGCGCTT+GGG 0.329671 5:-98219934 None:intergenic
TGGATATTTGGCCTTCCATT+TGG 0.341904 5:-98220225 None:intergenic
CCACCAAAATGTGAAAGATA+TGG 0.352224 5:+98221394 MsG0580029534.01.T01:CDS
GCCATTTGTGTTGTTGCGCT+TGG 0.355090 5:-98219935 None:intergenic
TAGAAGAAATCAAACGGTTC+TGG 0.355215 5:+98219859 MsG0580029534.01.T01:intron
TGAGAAGATGCGCAGCTTGT+TGG 0.358077 5:+98221796 MsG0580029534.01.T01:CDS
CCTGCATATGCTTTCCCACC+TGG 0.358776 5:+98220054 MsG0580029534.01.T01:CDS
CACCGGAGGCTGAACATGTT+TGG 0.362724 5:-98219244 None:intergenic
CACCGGAGGCTGAACATGTT+TGG 0.362724 5:-98220169 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.366509 5:-98218588 None:intergenic
TTCACATTTGGCCTTCCATT+TGG 0.367750 5:-98219300 None:intergenic
GATGCTCCTGTGTTGGTTGT+TGG 0.370634 5:+98219354 MsG0580029534.01.T01:CDS
TTGGATAAAGCAACACCAAC+TGG 0.371101 5:-98221742 None:intergenic
GATGTTCCTGTGTTGGTTGT+TGG 0.372353 5:+98218522 MsG0580029534.01.T01:CDS
AAACAGAAATCAAACGGTTC+TGG 0.380690 5:+98219030 MsG0580029534.01.T01:intron
TGCTATGCTCAGAGGGATCT+TGG 0.382368 5:-98220852 None:intergenic
AACCTTGCCCTGCTGCTGCC+GGG 0.389774 5:-98219194 None:intergenic
CCTGTATCCCCGGCAGCAGC+AGG 0.392745 5:+98219186 MsG0580029534.01.T01:CDS
GTGTTGTTGCGCTTGGGGCC+TGG 0.396203 5:-98219928 None:intergenic
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 5:+98218611 MsG0580029534.01.T01:CDS
GGACGAAAATTCGGAGCAAC+AGG 0.414645 5:-98220003 None:intergenic
CTGAACATGTTTGGCATCAA+TGG 0.415429 5:-98220160 None:intergenic
AACCTTGTCCTGCTGCCGCC+GGG 0.418211 5:-98220119 None:intergenic
TATGCTATTGATTATCCAAA+TGG 0.421444 5:+98220210 MsG0580029534.01.T01:CDS
CATGTGGATATAATTCAAAT+TGG 0.423453 5:+98220716 MsG0580029534.01.T01:CDS
CCCAAGCGCAACAACACAAA+TGG 0.425501 5:+98219934 MsG0580029534.01.T01:CDS
AAATATTTCAAAAGAATTTG+TGG 0.425853 5:+98221322 MsG0580029534.01.T01:CDS
TCCTTTAGTCACTGCTCCTA+TGG 0.430956 5:+98221652 MsG0580029534.01.T01:CDS
TGCCGACCATGATTCACATT+TGG 0.434091 5:-98219312 None:intergenic
GGATTCTCGCCATTAGGATA+AGG 0.435944 5:-98219159 None:intergenic
TATGCTGTTAATTATCCAAA+TGG 0.436533 5:+98219285 MsG0580029534.01.T01:CDS
GGATTCTCACCATTAGGATA+AGG 0.437709 5:-98220084 None:intergenic
AAACCTTGCCCTGCTGCTGC+CGG 0.438915 5:-98219195 None:intergenic
GGCTTAGGATTCTCGCCATT+AGG 0.439906 5:-98219165 None:intergenic
TGTGAAAGATATGGAGAAGA+AGG 0.441203 5:+98221403 MsG0580029534.01.T01:CDS
GAACAACAACAGGAGAAAAC+TGG 0.441684 5:+98220877 MsG0580029534.01.T01:CDS
GGCTTAGGATTCTCACCATT+AGG 0.442479 5:-98220090 None:intergenic
ATTTGTGTTACTGTTGCGCT+TGG 0.444589 5:-98219106 None:intergenic
AATCGGTTCTACAATTCCTT+CGG 0.444800 5:+98221607 MsG0580029534.01.T01:CDS
ATTGTCCTTGTTGTTTAAGA+TGG 0.446908 5:-98221705 None:intergenic
ACCACCCGACTCAATGATAT+CGG 0.449690 5:-98220902 None:intergenic
TTACTGTTGCGCTTGGGACC+TGG 0.453629 5:-98219099 None:intergenic
TTGGTGTTGCTTTATCCAAT+CGG 0.462526 5:+98221746 MsG0580029534.01.T01:CDS
TTATGTGCCTAGTGTTGGTC+AGG 0.464970 5:+98219443 MsG0580029534.01.T01:CDS
GGTTCAGGACCTTATCCTAA+TGG 0.464993 5:+98220075 MsG0580029534.01.T01:CDS
CCTGTATCCCCGGCGGCAGC+AGG 0.468531 5:+98220111 MsG0580029534.01.T01:CDS
GCCGCCGGGGATACAGGCTT+AGG 0.470478 5:-98220105 None:intergenic
GGTACCCTAGGACGAAAATT+CGG 0.472201 5:-98220012 None:intergenic
GCTCATTTAAATCAATTTGA+AGG 0.475975 5:-98220819 None:intergenic
TCAAATTGATTTAAATGAGC+CGG 0.477484 5:+98220822 MsG0580029534.01.T01:CDS
AAACCTTGTCCTGCTGCCGC+CGG 0.480799 5:-98220120 None:intergenic
GCATAGCATGGAACAACAAC+AGG 0.485938 5:+98220867 MsG0580029534.01.T01:CDS
ACAGGCGGCTGCTGATGATA+AGG 0.487188 5:-98219985 None:intergenic
GGCTTTCGATAGCGCGGTGA+TGG 0.487676 5:-98219078 None:intergenic
AGAAAGAGCTGGCGAAGACT+TGG 0.491824 5:-98218547 None:intergenic
AGAAAGAGCCGGCGAAGACT+TGG 0.492169 5:-98219379 None:intergenic
GCTGCCGGGGATACAGGCTT+AGG 0.492601 5:-98219180 None:intergenic
AAAGTCATGCCCCAAGGAAA+GGG 0.493395 5:+98221016 MsG0580029534.01.T01:CDS
ATGTTGTGCTTGCTGCCAAT+CGG 0.496477 5:+98221590 MsG0580029534.01.T01:CDS
ACGGTTCTGGAAATTTCAAT+CGG 0.496809 5:+98219872 MsG0580029534.01.T01:CDS
GTGACGATGCCTTATCCTAA+TGG 0.498221 5:+98219150 MsG0580029534.01.T01:CDS
GAATCCTAAGCCTGTATCCC+CGG 0.504373 5:+98219176 MsG0580029534.01.T01:CDS
CATTTGTGTTGTTGCGCTTG+GGG 0.510276 5:-98219933 None:intergenic
TGCCAAACATGTTCAGCCTC+CGG 0.511829 5:+98220167 MsG0580029534.01.T01:CDS
TGCCAAACATGTTCAGCCTC+CGG 0.513848 5:+98219242 MsG0580029534.01.T01:CDS
TAATTAACAGCATAAGCATT+CGG 0.516489 5:-98219276 None:intergenic
GAATCCTAAGCCTGTATCCC+CGG 0.518366 5:+98220101 MsG0580029534.01.T01:CDS
TCCCCGGCGGCAGCAGGACA+AGG 0.518402 5:+98220117 MsG0580029534.01.T01:CDS
TCACCGCGCTATCGAAAGCC+AGG 0.521803 5:+98219081 MsG0580029534.01.T01:CDS
TTTGTGTTACTGTTGCGCTT+GGG 0.522204 5:-98219105 None:intergenic
TCCCCGGCAGCAGCAGGGCA+AGG 0.524426 5:+98219192 MsG0580029534.01.T01:CDS
GGAGTCTCATGTTGTTCCAT+AGG 0.524662 5:-98221668 None:intergenic
ATGCCCCAAGGAAAGGGCAT+TGG 0.524782 5:+98221022 MsG0580029534.01.T01:CDS
TCACCATGCTATCGAAAGCC+AGG 0.525059 5:+98219910 MsG0580029534.01.T01:CDS
GCATGGCTAGCAATTTGAGT+TGG 0.525594 5:-98221356 None:intergenic
TAGTGTTGATGCTCCTGTGT+TGG 0.526887 5:+98219347 MsG0580029534.01.T01:CDS
GAAAGTCATGCCCCAAGGAA+AGG 0.527463 5:+98221015 MsG0580029534.01.T01:CDS
GTAATTATGGTGAGGATCAG+AGG 0.529504 5:+98218462 MsG0580029534.01.T01:CDS
ATTAAATAGAAGAAATCAAA+CGG 0.530787 5:+98219853 MsG0580029534.01.T01:intron
GGCACCGATATCATTGAGTC+GGG 0.531762 5:+98220898 MsG0580029534.01.T01:CDS
TAATCAATAGCATAAGCATT+CGG 0.533630 5:-98220201 None:intergenic
ACCTTGCCCTGCTGCTGCCG+GGG 0.534533 5:-98219193 None:intergenic
GTGATTAAACAGAAATCAAA+CGG 0.535847 5:+98219024 MsG0580029534.01.T01:intron
TGTTCCATGCTATGCTCAGA+GGG 0.536332 5:-98220859 None:intergenic
ACCTGAACAGAAGGAGCTAT+AGG 0.539393 5:-98219471 None:intergenic
AAGCGCAACAGTAACACAAA+TGG 0.541697 5:+98219108 MsG0580029534.01.T01:CDS
TGTTGGAACCAAGTCTTCGC+CGG 0.542383 5:+98219371 MsG0580029534.01.T01:CDS
GGAAGGCCAAATGTGAATCA+TGG 0.543940 5:+98219306 MsG0580029534.01.T01:CDS
TGATAAGGCCTCGTCGCCAC+AGG 0.544440 5:-98219970 None:intergenic
GGCTTTCGATAGCATGGTGA+TGG 0.547691 5:-98219907 None:intergenic
ATCAGAGTTTAGAATTGCAA+TGG 0.548775 5:-98220926 None:intergenic
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 5:+98218606 MsG0580029534.01.T01:CDS
GTCTGTTGCATTCCTTGAGG+AGG 0.550846 5:-98221539 None:intergenic
GGGCCTGGCTTTCGATAGCA+TGG 0.552238 5:-98219913 None:intergenic
TTTAAGATGGCAGTGTCTTG+AGG 0.553601 5:-98221692 None:intergenic
ATTTAAATCAATTTGAAGGA+GGG 0.554059 5:-98220815 None:intergenic
AACAAACGAACCTGAACAGA+AGG 0.557127 5:-98219480 None:intergenic
TCCATAGGAGCAGTGACTAA+AGG 0.557140 5:-98221653 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5:-98219258 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5:-98220183 None:intergenic
TGTCCAATGCCCTTTCCTTG+GGG 0.558952 5:-98221025 None:intergenic
ATGTGAGGTGGAGGTACCCT+AGG 0.561843 5:-98220024 None:intergenic
ACCTGAACAGAAGGAGCTCT+AGG 0.562137 5:-98218639 None:intergenic
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5:+98219249 MsG0580029534.01.T01:CDS
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5:+98220174 MsG0580029534.01.T01:CDS
TTGGCATCATTGGCATGAGC+AGG 0.563369 5:-98219225 None:intergenic
AACAATCGAACCTGAACAGA+AGG 0.565912 5:-98218648 None:intergenic
TTGTTCCATGCTATGCTCAG+AGG 0.567759 5:-98220860 None:intergenic
GAGGGATCTTGGACTGAAGC+CGG 0.570243 5:-98220841 None:intergenic
CATTTAAATCAATTTGAAGG+AGG 0.570848 5:-98220816 None:intergenic
GGATAAGGCATCGTCACCAC+AGG 0.573697 5:-98219144 None:intergenic
TCAGGAAGTGTAGAACCGAT+TGG 0.577352 5:-98221761 None:intergenic
AAGTGTTGATGTTCCTGTGT+TGG 0.580284 5:+98218515 MsG0580029534.01.T01:CDS
CTGTATCCCCGGCAGCAGCA+GGG 0.580570 5:+98219187 MsG0580029534.01.T01:CDS
GCATCATTGGCATGAGCAGG+TGG 0.581815 5:-98219222 None:intergenic
TGGCACCGATATCATTGAGT+CGG 0.583638 5:+98220897 MsG0580029534.01.T01:CDS
GGAACAGCAATGTGAGGTGG+AGG 0.583732 5:-98220033 None:intergenic
GAAGAAAAGTAATTATGGTG+AGG 0.586984 5:+98218454 None:intergenic
ATTGGCAGCAAGCACAACAT+AGG 0.587278 5:-98221587 None:intergenic
GTTTGAGCATGAGAAAGAGC+TGG 0.587648 5:-98218558 None:intergenic
CCAGGTGGGAAAGCATATGC+AGG 0.588904 5:-98220054 None:intergenic
TTAGGATAAGGTCCTGAACC+AGG 0.588996 5:-98220072 None:intergenic
ACACTTTGTAGCTCAACTGA+AGG 0.589388 5:-98221512 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.591510 5:-98218618 None:intergenic
GTTTGAGCATCAGAAAGAGC+CGG 0.593248 5:-98219390 None:intergenic
AATGTTTATGTGCCTAGTGT+TGG 0.594914 5:+98219438 MsG0580029534.01.T01:CDS
AGATCCCTCTGAGCATAGCA+TGG 0.596307 5:+98220855 MsG0580029534.01.T01:CDS
TGGATAAAGCAACACCAACT+GGG 0.597123 5:-98221741 None:intergenic
CTGTTAATTATCCAAATGGA+AGG 0.601168 5:+98219289 MsG0580029534.01.T01:CDS
GAAGGAATTGTAGAACCGAT+TGG 0.605792 5:-98221605 None:intergenic
ACCTTGTCCTGCTGCCGCCG+GGG 0.606328 5:-98220118 None:intergenic
CGAAAATTCGGAGCAACAGG+CGG 0.606908 5:-98220000 None:intergenic
CACTGCCATCTTAAACAACA+AGG 0.607403 5:+98221700 MsG0580029534.01.T01:CDS
ATTAAACAAGAATGACACAT+TGG 0.608999 5:+98221457 MsG0580029534.01.T01:CDS
GCATCAATGGCATGAGCAGG+TGG 0.609092 5:-98220147 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.611273 5:-98219450 None:intergenic
GGCCAAATGTGAATCATGGT+CGG 0.612718 5:+98219310 MsG0580029534.01.T01:CDS
ACCGATATCATTGAGTCGGG+TGG 0.615037 5:+98220901 MsG0580029534.01.T01:CDS
CTATTGATTATCCAAATGGA+AGG 0.618008 5:+98220214 MsG0580029534.01.T01:CDS
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5:-98219261 None:intergenic
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5:-98220186 None:intergenic
CAAAGTGTGATTCCTCCTCA+AGG 0.618896 5:+98221527 MsG0580029534.01.T01:CDS
TTCACTTTCCTGTGGCGACG+AGG 0.622515 5:+98219962 MsG0580029534.01.T01:CDS
TTGGCATCAATGGCATGAGC+AGG 0.623729 5:-98220150 None:intergenic
ATCGTCACCACAGGAAAGTG+AGG 0.627432 5:-98219135 None:intergenic
CAGAAGAAAGTCATGCCCCA+AGG 0.636413 5:+98221010 MsG0580029534.01.T01:CDS
GCAGGAACAGCAATGTGAGG+TGG 0.639750 5:-98220036 None:intergenic
AAGATGGCAGTGTCTTGAGG+AGG 0.644314 5:-98221689 None:intergenic
TGACAACTTGCAAACCCAGT+TGG 0.648867 5:+98221727 MsG0580029534.01.T01:CDS
AACACAGGAGCATCAACACT+AGG 0.653659 5:-98219345 None:intergenic
ATTATGGTGAGGATCAGAGG+AGG 0.653905 5:+98218465 MsG0580029534.01.T01:CDS
TGGCACGCTTCACTTTCCTG+TGG 0.655390 5:+98219954 MsG0580029534.01.T01:CDS
GATAAGGTCCTGAACCAGGT+GGG 0.657071 5:-98220068 None:intergenic
AAGGAAAGGGCATTGGACAG+AGG 0.658250 5:+98221029 MsG0580029534.01.T01:CDS
GGATCAGAGGAGGAAAGCAG+AGG 0.659593 5:+98218475 MsG0580029534.01.T01:CDS
TGGCATGCCTCACTTTCCTG+TGG 0.662752 5:+98219128 MsG0580029534.01.T01:CDS
GGACCTGGCTTTCGATAGCG+CGG 0.664348 5:-98219084 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5:-98218528 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5:-98219360 None:intergenic
TGTGTCTGTTGCATTCCTTG+AGG 0.673315 5:-98221542 None:intergenic
TATGCAGGAACAGCAATGTG+AGG 0.684479 5:-98220039 None:intergenic
GGATAAGGTCCTGAACCAGG+TGG 0.691288 5:-98220069 None:intergenic
TCCTAAGCCTGTATCCCCGG+CGG 0.721703 5:+98220104 MsG0580029534.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAACTTTCAAACAT+AGG - Chr5:98221093-98221112 None:intergenic 15.0%
!! AAATATTTCAAAAGAATTTG+TGG + Chr5:98221322-98221341 MsG0580029534.01.T01:CDS 15.0%
!! ATTAAATAGAAGAAATCAAA+CGG + Chr5:98219853-98219872 MsG0580029534.01.T01:intron 15.0%
!! ATTATGATATCTTCTTGTTA+TGG + Chr5:98220514-98220533 MsG0580029534.01.T01:intron 20.0%
!! ATTTAAATCAATTTGAAGGA+GGG - Chr5:98220818-98220837 None:intergenic 20.0%
!! TAATTCAAATTGGATGAAAT+TGG + Chr5:98220726-98220745 MsG0580029534.01.T01:CDS 20.0%
!! TGAAAGTTAAGAAAATTACT+TGG - Chr5:98220565-98220584 None:intergenic 20.0%
!! TTCAAAAAATATTATGCATG+TGG + Chr5:98220700-98220719 MsG0580029534.01.T01:CDS 20.0%
!!! ATATATAGGTTGTTTTTGAA+GGG + Chr5:98221269-98221288 MsG0580029534.01.T01:intron 20.0%
!!! ATTTTCTTAACTTTCATGAT+TGG + Chr5:98220569-98220588 MsG0580029534.01.T01:intron 20.0%
!!! CATGCATAATATTTTTTGAA+TGG - Chr5:98220700-98220719 None:intergenic 20.0%
!!! TATATATAGGTTGTTTTTGA+AGG + Chr5:98221268-98221287 MsG0580029534.01.T01:intron 20.0%
!!! TATTTTTTGTATAGAAAGCA+TGG + Chr5:98220768-98220787 MsG0580029534.01.T01:CDS 20.0%
! AAACAACGAGTCAAAAATAT+TGG + Chr5:98219698-98219717 MsG0580029534.01.T01:intron 25.0%
! ATCATATAAAAGACAAGATC+AGG - Chr5:98220401-98220420 None:intergenic 25.0%
! ATTAAACAAGAATGACACAT+TGG + Chr5:98221457-98221476 MsG0580029534.01.T01:CDS 25.0%
! CACATTCATTCTCTATATAT+AGG + Chr5:98221255-98221274 MsG0580029534.01.T01:intron 25.0%
! CATGTGGATATAATTCAAAT+TGG + Chr5:98220716-98220735 MsG0580029534.01.T01:CDS 25.0%
! CATTTAAATCAATTTGAAGG+AGG - Chr5:98220819-98220838 None:intergenic 25.0%
! GCTCATTTAAATCAATTTGA+AGG - Chr5:98220822-98220841 None:intergenic 25.0%
! GTGATTAAACAGAAATCAAA+CGG + Chr5:98219024-98219043 MsG0580029534.01.T01:intron 25.0%
! TAAACAACGAGTGAAAAATA+TGG + Chr5:98218869-98218888 MsG0580029534.01.T01:intron 25.0%
! TAATCAATAGCATAAGCATT+CGG - Chr5:98220204-98220223 None:intergenic 25.0%
! TAATTAACAGCATAAGCATT+CGG - Chr5:98219279-98219298 None:intergenic 25.0%
! TATGCTGTTAATTATCCAAA+TGG + Chr5:98219285-98219304 MsG0580029534.01.T01:CDS 25.0%
! TCTACAATATTCTTAACTCT+GGG + Chr5:98218956-98218975 MsG0580029534.01.T01:intron 25.0%
! TTCTACAATATTCTTAACTC+TGG + Chr5:98218955-98218974 MsG0580029534.01.T01:intron 25.0%
! TTCTTATGCTTGCAATAATA+TGG - Chr5:98219637-98219656 None:intergenic 25.0%
!! GTTTGATTTCTGTTTAATCA+CGG - Chr5:98219025-98219044 None:intergenic 25.0%
!! TATGCTATTGATTATCCAAA+TGG + Chr5:98220210-98220229 MsG0580029534.01.T01:CDS 25.0%
!! TCAAATTGATTTAAATGAGC+CGG + Chr5:98220822-98220841 MsG0580029534.01.T01:CDS 25.0%
!! TTAGAGTAATGTGATTTTGA+TGG + Chr5:98219557-98219576 MsG0580029534.01.T01:intron 25.0%
!! TTAGTGTAATGTGATTTTGA+TGG + Chr5:98218725-98218744 MsG0580029534.01.T01:intron 25.0%
!!! AGGCATAATTGATTTGATTA+AGG + Chr5:98220608-98220627 MsG0580029534.01.T01:intron 25.0%
!!! TATATAGGTTGTTTTTGAAG+GGG + Chr5:98221270-98221289 MsG0580029534.01.T01:intron 25.0%
!!! TATTGTTTTTTTCCCTTCAA+TGG + Chr5:98219744-98219763 MsG0580029534.01.T01:intron 25.0%
ACATTCTCAACATGATTCAT+AGG - Chr5:98218591-98218610 None:intergenic 30.0%
AGAAGGAGAAAAAGAGAAAA+AGG + Chr5:98221420-98221439 MsG0580029534.01.T01:CDS 30.0%
CTCTTATGCTTGCAATAATA+TGG - Chr5:98218806-98218825 None:intergenic 30.0%
CTGTTAATTATCCAAATGGA+AGG + Chr5:98219289-98219308 MsG0580029534.01.T01:CDS 30.0%
TGGAGTCGACAAATTTATTT+AGG + Chr5:98219718-98219737 MsG0580029534.01.T01:intron 30.0%
TTACTTTGATACCATTGAAG+TGG + Chr5:98220445-98220464 MsG0580029534.01.T01:intron 30.0%
TTTAATCACAGATCCATACA+CGG - Chr5:98219839-98219858 None:intergenic 30.0%
! ATCAGAGTTTAGAATTGCAA+TGG - Chr5:98220929-98220948 None:intergenic 30.0%
! CTATTGATTATCCAAATGGA+AGG + Chr5:98220214-98220233 MsG0580029534.01.T01:CDS 30.0%
! TCAACATGATTCATAGGTTT+TGG - Chr5:98218585-98218604 None:intergenic 30.0%
! TCTCCATATCTTTCACATTT+TGG - Chr5:98221400-98221419 None:intergenic 30.0%
! TCTTGTTATGGTTCTGTAAT+TGG + Chr5:98220526-98220545 MsG0580029534.01.T01:intron 30.0%
! TTCTCAAGTTTGTTCATATC+AGG - Chr5:98221782-98221801 None:intergenic 30.0%
!! ACAGCTTTTATTTCCATTGA+AGG - Chr5:98219760-98219779 None:intergenic 30.0%
!! ATTGTCCTTGTTGTTTAAGA+TGG - Chr5:98221708-98221727 None:intergenic 30.0%
!! CAGCTTTTATTTCCATTGAA+GGG - Chr5:98219759-98219778 None:intergenic 30.0%
!! CTGTAATTGGTTTGAGTAAT+TGG + Chr5:98220539-98220558 MsG0580029534.01.T01:intron 30.0%
!! TTGGTGGATAAAGTACTTTT+GGG - Chr5:98221381-98221400 None:intergenic 30.0%
!! TTTGGTGGATAAAGTACTTT+TGG - Chr5:98221382-98221401 None:intergenic 30.0%
!!! ATTGTTTTTTATCCCTTCGA+TGG + Chr5:98218918-98218937 MsG0580029534.01.T01:intron 30.0%
!!! CATCATTTTTTGAGTAAACC+GGG + Chr5:98220631-98220650 MsG0580029534.01.T01:intron 30.0%
!!! GCATCATTTTTTGAGTAAAC+CGG + Chr5:98220630-98220649 MsG0580029534.01.T01:intron 30.0%
!!! TCACCTTGTTTTTGGATATT+TGG - Chr5:98220240-98220259 None:intergenic 30.0%
AAACAGAAATCAAACGGTTC+TGG + Chr5:98219030-98219049 MsG0580029534.01.T01:intron 35.0%
AATGTTTATGTGCCTAGTGT+TGG + Chr5:98219438-98219457 MsG0580029534.01.T01:CDS 35.0%
AGGCCAAATATCCAAAAACA+AGG + Chr5:98220234-98220253 MsG0580029534.01.T01:CDS 35.0%
CCACCAAAATGTGAAAGATA+TGG + Chr5:98221394-98221413 MsG0580029534.01.T01:CDS 35.0%
GAAACTTAACCAAGAAAACG+AGG - Chr5:98220334-98220353 None:intergenic 35.0%
GCAACTAAAATCCACTTCAA+TGG - Chr5:98220459-98220478 None:intergenic 35.0%
GGGATGAAAAAACATGGAAA+GGG + Chr5:98221290-98221309 MsG0580029534.01.T01:CDS 35.0%
GTCAATGAAGTTCATTCACA+TGG - Chr5:98220263-98220282 None:intergenic 35.0%
TAGAAGAAATCAAACGGTTC+TGG + Chr5:98219859-98219878 MsG0580029534.01.T01:intron 35.0%
TGTGAAAGATATGGAGAAGA+AGG + Chr5:98221403-98221422 MsG0580029534.01.T01:CDS 35.0%
TTGAAGGGGATGAAAAAACA+TGG + Chr5:98221284-98221303 MsG0580029534.01.T01:CDS 35.0%
TTTAATCACGGATCCATACA+CGG - Chr5:98219013-98219032 None:intergenic 35.0%
! AATCGGTTCTACAATTCCTT+CGG + Chr5:98221607-98221626 MsG0580029534.01.T01:CDS 35.0%
! CCATATCTTTCACATTTTGG+TGG - Chr5:98221397-98221416 None:intergenic 35.0%
! TTGGCTAGTTCATCTGATTA+AGG + Chr5:98220588-98220607 MsG0580029534.01.T01:intron 35.0%
!! ACAGCTTTTATTTCCATCGA+AGG - Chr5:98218934-98218953 None:intergenic 35.0%
!! ACGGTTCTGGAAATTTCAAT+CGG + Chr5:98219872-98219891 MsG0580029534.01.T01:CDS 35.0%
!! AGATTTTAGCCTCGTTTTCT+TGG + Chr5:98220322-98220341 MsG0580029534.01.T01:intron 35.0%
!! CAGCTTTTATTTCCATCGAA+GGG - Chr5:98218933-98218952 None:intergenic 35.0%
!! TTGGTGTTGCTTTATCCAAT+CGG + Chr5:98221746-98221765 MsG0580029534.01.T01:CDS 35.0%
AACAAACGAACCTGAACAGA+AGG - Chr5:98219483-98219502 None:intergenic 40.0%
AACAATCGAACCTGAACAGA+AGG - Chr5:98218651-98218670 None:intergenic 40.0%
AAGCGCAACAGTAACACAAA+TGG + Chr5:98219108-98219127 MsG0580029534.01.T01:CDS 40.0%
ACACTTTGTAGCTCAACTGA+AGG - Chr5:98221515-98221534 None:intergenic 40.0%
AGATCCATACACGGAAAATC+AGG - Chr5:98219830-98219849 None:intergenic 40.0%
CACTGCCATCTTAAACAACA+AGG + Chr5:98221700-98221719 MsG0580029534.01.T01:CDS 40.0%
CTGAACATGTTTGGCATCAA+TGG - Chr5:98220163-98220182 None:intergenic 40.0%
CTGAACATGTTTGGCATCAT+TGG - Chr5:98219238-98219257 None:intergenic 40.0%
GAACAACAACAGGAGAAAAC+TGG + Chr5:98220877-98220896 MsG0580029534.01.T01:CDS 40.0%
GAAGGAATTGTAGAACCGAT+TGG - Chr5:98221608-98221627 None:intergenic 40.0%
GGATTCTCACCATTAGGATA+AGG - Chr5:98220087-98220106 None:intergenic 40.0%
GGGGATGAAAAAACATGGAA+AGG + Chr5:98221289-98221308 MsG0580029534.01.T01:CDS 40.0%
GTAATTATGGTGAGGATCAG+AGG + Chr5:98218462-98218481 MsG0580029534.01.T01:CDS 40.0%
TGGATAAAGCAACACCAACT+GGG - Chr5:98221744-98221763 None:intergenic 40.0%
TTGGATAAAGCAACACCAAC+TGG - Chr5:98221745-98221764 None:intergenic 40.0%
! AATGTTTCTGTGCCTAGTGT+TGG + Chr5:98218606-98218625 MsG0580029534.01.T01:CDS 40.0%
! ATTTGTGTTACTGTTGCGCT+TGG - Chr5:98219109-98219128 None:intergenic 40.0%
! TGGATATTTGGCCTTCCATT+TGG - Chr5:98220228-98220247 None:intergenic 40.0%
! TTCACATTTGGCCTTCCATT+TGG - Chr5:98219303-98219322 None:intergenic 40.0%
! TTTAAGATGGCAGTGTCTTG+AGG - Chr5:98221695-98221714 None:intergenic 40.0%
! TTTGCCTGATTTTCCGTGTA+TGG + Chr5:98218997-98219016 MsG0580029534.01.T01:intron 40.0%
! TTTGTGTTACTGTTGCGCTT+GGG - Chr5:98219108-98219127 None:intergenic 40.0%
!! AAGATTCTAGCTTAACCCTG+TGG + Chr5:98220354-98220373 MsG0580029534.01.T01:intron 40.0%
!! AAGTGTTGATGTTCCTGTGT+TGG + Chr5:98218515-98218534 MsG0580029534.01.T01:CDS 40.0%
!! AATACCCAAAAAAGCACCAC+AGG - Chr5:98220373-98220392 None:intergenic 40.0%
!! ATACCCAAAAAAGCACCACA+GGG - Chr5:98220372-98220391 None:intergenic 40.0%
!! GGATAAAGTACTTTTGGGCA+TGG - Chr5:98221376-98221395 None:intergenic 40.0%
!!! TAACCCTGTGGTGCTTTTTT+GGG + Chr5:98220366-98220385 MsG0580029534.01.T01:intron 40.0%
!!! TCACATGGTCACCTTGTTTT+TGG - Chr5:98220248-98220267 None:intergenic 40.0%
!!! TTAACCCTGTGGTGCTTTTT+TGG + Chr5:98220365-98220384 MsG0580029534.01.T01:intron 40.0%
AAAAACATGGAAAGGGACGC+TGG + Chr5:98221297-98221316 MsG0580029534.01.T01:CDS 45.0%
AAAGTCATGCCCCAAGGAAA+GGG + Chr5:98221016-98221035 MsG0580029534.01.T01:CDS 45.0%
ACCACCCGACTCAATGATAT+CGG - Chr5:98220905-98220924 None:intergenic 45.0%
ACCTGAACAGAAGGAGCTAT+AGG - Chr5:98219474-98219493 None:intergenic 45.0%
ATTATGGTGAGGATCAGAGG+AGG + Chr5:98218465-98218484 MsG0580029534.01.T01:CDS 45.0%
ATTGGCAGCAAGCACAACAT+AGG - Chr5:98221590-98221609 None:intergenic 45.0%
CAAAGTGTGATTCCTCCTCA+AGG + Chr5:98221527-98221546 MsG0580029534.01.T01:CDS 45.0%
GCATAGCATGGAACAACAAC+AGG + Chr5:98220867-98220886 MsG0580029534.01.T01:CDS 45.0%
GCATGGCTAGCAATTTGAGT+TGG - Chr5:98221359-98221378 None:intergenic 45.0%
GGAAGGCCAAATGTGAATCA+TGG + Chr5:98219306-98219325 MsG0580029534.01.T01:CDS 45.0%
GGAGTCTCATGTTGTTCCAT+AGG - Chr5:98221671-98221690 None:intergenic 45.0%
GGATCCATACACGGAAAATC+AGG - Chr5:98219004-98219023 None:intergenic 45.0%
GGATTCTCGCCATTAGGATA+AGG - Chr5:98219162-98219181 None:intergenic 45.0%
GGCCAAATGTGAATCATGGT+CGG + Chr5:98219310-98219329 MsG0580029534.01.T01:CDS 45.0%
GGCTTAGGATTCTCACCATT+AGG - Chr5:98220093-98220112 None:intergenic 45.0%
GGTACCCTAGGACGAAAATT+CGG - Chr5:98220015-98220034 None:intergenic 45.0%
GGTTCAGGACCTTATCCTAA+TGG + Chr5:98220075-98220094 MsG0580029534.01.T01:CDS 45.0%
GTGACGATGCCTTATCCTAA+TGG + Chr5:98219150-98219169 MsG0580029534.01.T01:CDS 45.0%
GTTTGAGCATCAGAAAGAGC+CGG - Chr5:98219393-98219412 None:intergenic 45.0%
GTTTGAGCATGAGAAAGAGC+TGG - Chr5:98218561-98218580 None:intergenic 45.0%
TATGCAGGAACAGCAATGTG+AGG - Chr5:98220042-98220061 None:intergenic 45.0%
TCCATAGGAGCAGTGACTAA+AGG - Chr5:98221656-98221675 None:intergenic 45.0%
TCCTATAGCTCCTTCTGTTC+AGG + Chr5:98219470-98219489 MsG0580029534.01.T01:CDS 45.0%
TCCTTTAGTCACTGCTCCTA+TGG + Chr5:98221652-98221671 MsG0580029534.01.T01:CDS 45.0%
TGACAACTTGCAAACCCAGT+TGG + Chr5:98221727-98221746 MsG0580029534.01.T01:CDS 45.0%
TGCCGACCATGATTCACATT+TGG - Chr5:98219315-98219334 None:intergenic 45.0%
TGTGTCTGTTGCATTCCTTG+AGG - Chr5:98221545-98221564 None:intergenic 45.0%
TGTTCCATGCTATGCTCAGA+GGG - Chr5:98220862-98220881 None:intergenic 45.0%
TTAGGATAAGGTCCTGAACC+AGG - Chr5:98220075-98220094 None:intergenic 45.0%
TTGGTTCCAACAACCAACAC+AGG - Chr5:98218531-98218550 None:intergenic 45.0%
TTGTTCCATGCTATGCTCAG+AGG - Chr5:98220863-98220882 None:intergenic 45.0%
! ATGTTGTGCTTGCTGCCAAT+CGG + Chr5:98221590-98221609 MsG0580029534.01.T01:CDS 45.0%
! CATTTGTGTTGTTGCGCTTG+GGG - Chr5:98219936-98219955 None:intergenic 45.0%
! CCATTTGTGTTGTTGCGCTT+GGG - Chr5:98219937-98219956 None:intergenic 45.0%
! GCGAGTCGACAAATCTGTTT+TGG + Chr5:98218891-98218910 MsG0580029534.01.T01:intron 45.0%
! TCAGGAAGTGTAGAACCGAT+TGG - Chr5:98221764-98221783 None:intergenic 45.0%
! TGCTCCGAATTTTCGTCCTA+GGG + Chr5:98220008-98220027 MsG0580029534.01.T01:CDS 45.0%
! TTGCTCCGAATTTTCGTCCT+AGG + Chr5:98220007-98220026 MsG0580029534.01.T01:CDS 45.0%
!! AACACAGGAGCATCAACACT+AGG - Chr5:98219348-98219367 None:intergenic 45.0%
!! GATGTTCCTGTGTTGGTTGT+TGG + Chr5:98218522-98218541 MsG0580029534.01.T01:CDS 45.0%
!! TAGTGTTGATGCTCCTGTGT+TGG + Chr5:98219347-98219366 MsG0580029534.01.T01:CDS 45.0%
!! TCGTTTTGTTGCTGAACCGA+AGG - Chr5:98221626-98221645 None:intergenic 45.0%
!! TGGCACCGATATCATTGAGT+CGG + Chr5:98220897-98220916 MsG0580029534.01.T01:CDS 45.0%
!! TTATGTGCCTAGTGTTGGTC+AGG + Chr5:98219443-98219462 MsG0580029534.01.T01:CDS 45.0%
AAGATGGCAGTGTCTTGAGG+AGG - Chr5:98221692-98221711 None:intergenic 50.0%
ACCGATATCATTGAGTCGGG+TGG + Chr5:98220901-98220920 MsG0580029534.01.T01:CDS 50.0%
ACCTGAACAGAAGGAGCTCT+AGG - Chr5:98218642-98218661 None:intergenic 50.0%
AGAAAGAGCTGGCGAAGACT+TGG - Chr5:98218550-98218569 None:intergenic 50.0%
AGATCCCTCTGAGCATAGCA+TGG + Chr5:98220855-98220874 MsG0580029534.01.T01:CDS 50.0%
ATCGTCACCACAGGAAAGTG+AGG - Chr5:98219138-98219157 None:intergenic 50.0%
CAGAAGAAAGTCATGCCCCA+AGG + Chr5:98221010-98221029 MsG0580029534.01.T01:CDS 50.0%
CCCAAGCGCAACAACACAAA+TGG + Chr5:98219934-98219953 MsG0580029534.01.T01:CDS 50.0%
CGAAAATTCGGAGCAACAGG+CGG - Chr5:98220003-98220022 None:intergenic 50.0%
CTGTCCAATGCCCTTTCCTT+GGG - Chr5:98221029-98221048 None:intergenic 50.0%
CTTGGGGCATGACTTTCTTC+TGG - Chr5:98221012-98221031 None:intergenic 50.0%
GAAAGTCATGCCCCAAGGAA+AGG + Chr5:98221015-98221034 MsG0580029534.01.T01:CDS 50.0%
GAATCCTAAGCCTGTATCCC+CGG + Chr5:98219176-98219195 MsG0580029534.01.T01:CDS 50.0%
GAGTAAACCGGGTGATGCTA+GGG + Chr5:98220642-98220661 MsG0580029534.01.T01:intron 50.0%
GATAAGGTCCTGAACCAGGT+GGG - Chr5:98220071-98220090 None:intergenic 50.0%
GGACGAAAATTCGGAGCAAC+AGG - Chr5:98220006-98220025 None:intergenic 50.0%
GGCTTAGGATTCTCGCCATT+AGG - Chr5:98219168-98219187 None:intergenic 50.0%
GGCTTTCGATAGCATGGTGA+TGG - Chr5:98219910-98219929 None:intergenic 50.0%
GTCTGTTGCATTCCTTGAGG+AGG - Chr5:98221542-98221561 None:intergenic 50.0%
TATGCTTTCCCACCTGGTTC+AGG + Chr5:98220060-98220079 MsG0580029534.01.T01:CDS 50.0%
TCACCATGCTATCGAAAGCC+AGG + Chr5:98219910-98219929 MsG0580029534.01.T01:CDS 50.0%
TCCTAGAGCTCCTTCTGTTC+AGG + Chr5:98218638-98218657 MsG0580029534.01.T01:CDS 50.0%
TCTGTCCAATGCCCTTTCCT+TGG - Chr5:98221030-98221049 None:intergenic 50.0%
TCTTAGTCCCTAGCATCACC+CGG - Chr5:98220652-98220671 None:intergenic 50.0%
TGAGAAGATGCGCAGCTTGT+TGG + Chr5:98221796-98221815 MsG0580029534.01.T01:CDS 50.0%
TGAGTAAACCGGGTGATGCT+AGG + Chr5:98220641-98220660 MsG0580029534.01.T01:intron 50.0%
TGCCAAACATGTTCAGCCTC+CGG + Chr5:98219242-98219261 MsG0580029534.01.T01:CDS 50.0%
TGCTATGCTCAGAGGGATCT+TGG - Chr5:98220855-98220874 None:intergenic 50.0%
TGTCCAATGCCCTTTCCTTG+GGG - Chr5:98221028-98221047 None:intergenic 50.0%
TGTTGGAACCAAGTCTTCGC+CGG + Chr5:98218539-98218558 MsG0580029534.01.T01:CDS 50.0%
TTGGCATCAATGGCATGAGC+AGG - Chr5:98220153-98220172 None:intergenic 50.0%
TTGGCATCATTGGCATGAGC+AGG - Chr5:98219228-98219247 None:intergenic 50.0%
! GCCATTTGTGTTGTTGCGCT+TGG - Chr5:98219938-98219957 None:intergenic 50.0%
!! AAGGAAAGGGCATTGGACAG+AGG + Chr5:98221029-98221048 MsG0580029534.01.T01:CDS 50.0%
!! GATGCTCCTGTGTTGGTTGT+TGG + Chr5:98219354-98219373 MsG0580029534.01.T01:CDS 50.0%
!! GGCACCGATATCATTGAGTC+GGG + Chr5:98220898-98220917 MsG0580029534.01.T01:CDS 50.0%
!! TTCTGTGCCTAGTGTTGGTC+AGG + Chr5:98218611-98218630 MsG0580029534.01.T01:CDS 50.0%
ACAGGCGGCTGCTGATGATA+AGG - Chr5:98219988-98220007 None:intergenic 55.0%
AGAAAGAGCCGGCGAAGACT+TGG - Chr5:98219382-98219401 None:intergenic 55.0%
CACCGGAGGCTGAACATGTT+TGG - Chr5:98219247-98219266 None:intergenic 55.0%
CCTGCATATGCTTTCCCACC+TGG + Chr5:98220054-98220073 MsG0580029534.01.T01:CDS 55.0%
GAGGGATCTTGGACTGAAGC+CGG - Chr5:98220844-98220863 None:intergenic 55.0%
GCAGGAACAGCAATGTGAGG+TGG - Chr5:98220039-98220058 None:intergenic 55.0%
GCATCAATGGCATGAGCAGG+TGG - Chr5:98220150-98220169 None:intergenic 55.0%
GCATCATTGGCATGAGCAGG+TGG - Chr5:98219225-98219244 None:intergenic 55.0%
GCATTCGGATCTCCTTGCAC+CGG - Chr5:98219264-98219283 None:intergenic 55.0%
GGAACAGCAATGTGAGGTGG+AGG - Chr5:98220036-98220055 None:intergenic 55.0%
GGAGCAACCTGACCAACACT+AGG - Chr5:98218621-98218640 None:intergenic 55.0%
GGATAAGGTCCTGAACCAGG+TGG - Chr5:98220072-98220091 None:intergenic 55.0%
GGATCAGAGGAGGAAAGCAG+AGG + Chr5:98218475-98218494 MsG0580029534.01.T01:CDS 55.0%
TGGCACGCTTCACTTTCCTG+TGG + Chr5:98219954-98219973 MsG0580029534.01.T01:CDS 55.0%
TGGCATGCCTCACTTTCCTG+TGG + Chr5:98219128-98219147 MsG0580029534.01.T01:CDS 55.0%
TTACTGTTGCGCTTGGGACC+TGG - Chr5:98219102-98219121 None:intergenic 55.0%
TTCACTTTCCTGTGGCGACG+AGG + Chr5:98219962-98219981 MsG0580029534.01.T01:CDS 55.0%
! ATGCCCCAAGGAAAGGGCAT+TGG + Chr5:98221022-98221041 MsG0580029534.01.T01:CDS 55.0%
! CCAGGTGGGAAAGCATATGC+AGG - Chr5:98220057-98220076 None:intergenic 55.0%
!! ATGTGAGGTGGAGGTACCCT+AGG - Chr5:98220027-98220046 None:intergenic 55.0%
!! GGATAAGGCATCGTCACCAC+AGG - Chr5:98219147-98219166 None:intergenic 55.0%
AAACCTTGCCCTGCTGCTGC+CGG - Chr5:98219198-98219217 None:intergenic 60.0%
AAACCTTGTCCTGCTGCCGC+CGG - Chr5:98220123-98220142 None:intergenic 60.0%
CATGTTCAGCCTCCGGTGCA+AGG + Chr5:98219249-98219268 MsG0580029534.01.T01:CDS 60.0%
GGCTTTCGATAGCGCGGTGA+TGG - Chr5:98219081-98219100 None:intergenic 60.0%
TCACCGCGCTATCGAAAGCC+AGG + Chr5:98219081-98219100 MsG0580029534.01.T01:CDS 60.0%
TCCTAAGCCTGTATCCCCGG+CGG + Chr5:98219179-98219198 MsG0580029534.01.T01:CDS 60.0%
TGATAAGGCCTCGTCGCCAC+AGG - Chr5:98219973-98219992 None:intergenic 60.0%
TTCGGATCTCCTTGCACCGG+AGG - Chr5:98219261-98219280 None:intergenic 60.0%
! GGACCTGGCTTTCGATAGCG+CGG - Chr5:98219087-98219106 None:intergenic 60.0%
! GGGCCTGGCTTTCGATAGCA+TGG - Chr5:98219916-98219935 None:intergenic 60.0%
AACCTTGCCCTGCTGCTGCC+GGG - Chr5:98219197-98219216 None:intergenic 65.0%
AACCTTGTCCTGCTGCCGCC+GGG - Chr5:98220122-98220141 None:intergenic 65.0%
CTGTATCCCCGGCAGCAGCA+GGG + Chr5:98219187-98219206 MsG0580029534.01.T01:CDS 65.0%
GCTGCCGGGGATACAGGCTT+AGG - Chr5:98219183-98219202 None:intergenic 65.0%
! GTGTTGTTGCGCTTGGGGCC+TGG - Chr5:98219931-98219950 None:intergenic 65.0%
ACCTTGCCCTGCTGCTGCCG+GGG - Chr5:98219196-98219215 None:intergenic 70.0%
ACCTTGTCCTGCTGCCGCCG+GGG - Chr5:98220121-98220140 None:intergenic 70.0%
CCTGCTGCTGCCGGGGATAC+AGG - Chr5:98219189-98219208 None:intergenic 70.0%
CCTGTATCCCCGGCAGCAGC+AGG + Chr5:98219186-98219205 MsG0580029534.01.T01:CDS 70.0%
GCCGCCGGGGATACAGGCTT+AGG - Chr5:98220108-98220127 None:intergenic 70.0%
CCTGCTGCCGCCGGGGATAC+AGG - Chr5:98220114-98220133 None:intergenic 75.0%
CCTGTATCCCCGGCGGCAGC+AGG + Chr5:98220111-98220130 MsG0580029534.01.T01:CDS 75.0%
TCCCCGGCAGCAGCAGGGCA+AGG + Chr5:98219192-98219211 MsG0580029534.01.T01:CDS 75.0%
TCCCCGGCGGCAGCAGGACA+AGG + Chr5:98220117-98220136 MsG0580029534.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 98218459 98221832 98218459 ID=MsG0580029534.01;Name=MsG0580029534.01
Chr5 mRNA 98218459 98221832 98218459 ID=MsG0580029534.01.T01;Parent=MsG0580029534.01;Name=MsG0580029534.01.T01;_AED=0.03;_eAED=0.08;_QI=0|0|0|1|0.75|0.8|5|0|665
Chr5 exon 98218459 98218659 98218459 ID=MsG0580029534.01.T01:exon:25559;Parent=MsG0580029534.01.T01
Chr5 exon 98219036 98219491 98219036 ID=MsG0580029534.01.T01:exon:25560;Parent=MsG0580029534.01.T01
Chr5 exon 98219862 98220255 98219862 ID=MsG0580029534.01.T01:exon:25561;Parent=MsG0580029534.01.T01
Chr5 exon 98220671 98221061 98220671 ID=MsG0580029534.01.T01:exon:25562;Parent=MsG0580029534.01.T01
Chr5 exon 98221277 98221832 98221277 ID=MsG0580029534.01.T01:exon:25563;Parent=MsG0580029534.01.T01
Chr5 CDS 98218459 98218659 98218459 ID=MsG0580029534.01.T01:cds;Parent=MsG0580029534.01.T01
Chr5 CDS 98219036 98219491 98219036 ID=MsG0580029534.01.T01:cds;Parent=MsG0580029534.01.T01
Chr5 CDS 98219862 98220255 98219862 ID=MsG0580029534.01.T01:cds;Parent=MsG0580029534.01.T01
Chr5 CDS 98220671 98221061 98220671 ID=MsG0580029534.01.T01:cds;Parent=MsG0580029534.01.T01
Chr5 CDS 98221277 98221832 98221277 ID=MsG0580029534.01.T01:cds;Parent=MsG0580029534.01.T01
Gene Sequence

>MsG0580029534.01.T01

AAAGTAATTATGGTGAGGATCAGAGGAGGAAAGCAGAGGAAAAGTGTTGATGAGAAAAGTGTTGATGTTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCAGCTCTTTCTCATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTAGAGCTCCTTCTGTTCAGAAATCAAACGGTTCTGGAAACTTCAATGCGAAGAATAAGATGCCATCACCGCGCTATCGAAAGCCAGGTCCCAAGCGCAACAGTAACACAAATGGCATGCCTCACTTTCCTGTGGTGACGATGCCTTATCCTAATGGCGAGAATCCTAAGCCTGTATCCCCGGCAGCAGCAGGGCAAGGTTTTACTCCACCTGCTCATGCCAATGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTGTTAATTATCCAAATGGAAGGCCAAATGTGAATCATGGTCGGCATCATCAAAGACCTAGTGTTGATGCTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCGGCTCTTTCTGATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTATGTGCCTAGTGTTGGTCAGGTTGCTCCTATAGCTCCTTCTGTTCAGAAGAAATCAAACGGTTCTGGAAATTTCAATCGGATGAATAAGCTGCCATCACCATGCTATCGAAAGCCAGGCCCCAAGCGCAACAACACAAATGGCACGCTTCACTTTCCTGTGGCGACGAGGCCTTATCATCAGCAGCCGCCTGTTGCTCCGAATTTTCGTCCTAGGGTACCTCCACCTCACATTGCTGTTCCTGCATATGCTTTCCCACCTGGTTCAGGACCTTATCCTAATGGTGAGAATCCTAAGCCTGTATCCCCGGCGGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCATTGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTATTGATTATCCAAATGGAAGGCCAAATATCCAAAAACAAGAATTAAGAAGATTTAGCATATTTTTACCATTCAAAAAATATTATGCATGTGGATATAATTCAAATTGGATGAAATTGGTTTTGAATTCTTATAGTTGTATTTTTTGTATAGAAAGCATGGAAGAAAGAAAAAGTATACAATCATCCCTCCTTCAAATTGATTTAAATGAGCCGGCTTCAGTCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCGATATCATTGAGTCGGGTGGTGCCATTGCAATTCTAAACTCTGATGATAATAACGTCACAACTCTAAACTCTGACGAAAATAACTTAATTCAAGCTGAGTCAGTACCAGAAGAAAGTCATGCCCCAAGGAAAGGGCATTGGACAGAGGATGAACACAAGTTGTTTTTGAAGGGGATGAAAAAACATGGAAAGGGACGCTGGAAAAATATTTCAAAAGAATTTGTGGTGACAAAAACTCCAACTCAAATTGCTAGCCATGCCCAAAAGTACTTTATCCACCAAAATGTGAAAGATATGGAGAAGAAGGAGAAAAAGAGAAAAAGGATTCACGACACAACATTAAACAAGAATGACACATTGGTCACTGTCGCTGTTGATCAAGAAGATGAGATTCCTTCAGTTGAGCTACAAAGTGTGATTCCTCCTCAAGGAATGCAACAGACACAAACACAACAGAATGAGATTTCTCCTATGTTGTGCTTGCTGCCAATCGGTTCTACAATTCCTTCGGTTCAGCAACAAAACGAGCTTACTCCTTTAGTCACTGCTCCTATGGAACAACATGAGACTCCTCCTCAAGACACTGCCATCTTAAACAACAAGGACAATGACAACTTGCAAACCCAGTTGGTGTTGCTTTATCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGCGCAGCTTGTTGGCAAAAGAACTTTGA
Protein sequence

>MsG0580029534.01.T01

KVIMVRIRGGKQRKSVDEKSVDVPVLVVGTKSSPALSHAQTPKPMNHVENVSVPSVGQVAPRAPSVQKSNGSGNFNAKNKMPSPRYRKPGPKRNSNTNGMPHFPVVTMPYPNGENPKPVSPAAAGQGFTPPAHANDAKHVQPPVQGDPNAYAVNYPNGRPNVNHGRHHQRPSVDAPVLVVGTKSSPALSDAQTPKPMNHVENVYVPSVGQVAPIAPSVQKKSNGSGNFNRMNKLPSPCYRKPGPKRNNTNGTLHFPVATRPYHQQPPVAPNFRPRVPPPHIAVPAYAFPPGSGPYPNGENPKPVSPAAAGQGFTPPAHAIDAKHVQPPVQGDPNAYAIDYPNGRPNIQKQELRRFSIFLPFKKYYACGYNSNWMKLVLNSYSCIFCIESMEERKSIQSSLLQIDLNEPASVQDPSEHSMEQQQEKTGTDIIESGGAIAILNSDDNNVTTLNSDENNLIQAESVPEESHAPRKGHWTEDEHKLFLKGMKKHGKGRWKNISKEFVVTKTPTQIASHAQKYFIHQNVKDMEKKEKKRKRIHDTTLNKNDTLVTVAVDQEDEIPSVELQSVIPPQGMQQTQTQQNEISPMLCLLPIGSTIPSVQQQNELTPLVTAPMEQHETPPQDTAILNNKDNDNLQTQLVLLYPIGSTLPDMNKLEKMRSLLAKEL*