Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680030324.01.T02 | KEH24770.1 | 83.607 | 122 | 16 | 1 | 1 | 122 | 1 | 118 | 5.47E-54 | 177 |
MsG0680030324.01.T01 | AES99850.1 | 63.399 | 153 | 47 | 3 | 1 | 152 | 1 | 145 | 3.09E-54 | 182 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680030324.01.T01 | Q9STS6 | 55.66 | 106 | 46 | 1 | 9 | 114 | 36 | 140 | 3.33E-35 | 128 |
MsG0680030324.01.T02 | Q9STS6 | 46.154 | 78 | 41 | 1 | 1 | 78 | 64 | 140 | 6.97E-14 | 70.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680030324.01.T01 | G7KHA7 | 63.399 | 153 | 47 | 3 | 1 | 152 | 1 | 145 | 1.48e-54 | 182 |
MsG0680030324.01.T02 | A0A072UG64 | 83.607 | 122 | 16 | 1 | 1 | 122 | 1 | 118 | 2.61e-54 | 177 |
Gene ID | Type | Classification |
---|---|---|
MsG0680030324.01.T02 | TF | LOB |
MsG0680030324.01.T01 | TF | LOB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680030324.01.T02 | MTR_6g004550 | 83.607 | 122 | 16 | 1 | 1 | 122 | 1 | 118 | 6.63e-58 | 177 |
MsG0680030324.01.T02 | MTR_6g011200 | 48.026 | 152 | 53 | 3 | 1 | 133 | 37 | 181 | 5.24e-34 | 119 |
MsG0680030324.01.T02 | MTR_4g099230 | 57.798 | 109 | 34 | 3 | 5 | 113 | 34 | 130 | 1.56e-33 | 115 |
MsG0680030324.01.T02 | MTR_5g085390 | 58.120 | 117 | 40 | 3 | 1 | 116 | 37 | 145 | 4.48e-33 | 116 |
MsG0680030324.01.T02 | MTR_6g011250 | 51.961 | 102 | 39 | 2 | 4 | 102 | 40 | 134 | 8.55e-29 | 104 |
MsG0680030324.01.T02 | MTR_6g011230 | 50.926 | 108 | 46 | 3 | 1 | 108 | 39 | 139 | 5.37e-27 | 100 |
MsG0680030324.01.T02 | MTR_3g452660 | 41.975 | 81 | 46 | 1 | 2 | 82 | 36 | 115 | 3.20e-13 | 65.1 |
MsG0680030324.01.T02 | MTR_8g017090 | 46.575 | 73 | 38 | 1 | 4 | 76 | 43 | 114 | 5.00e-12 | 62.0 |
MsG0680030324.01.T02 | MTR_4g107450 | 39.744 | 78 | 46 | 1 | 1 | 78 | 38 | 114 | 1.33e-11 | 60.8 |
MsG0680030324.01.T01 | MTR_5g085390 | 63.399 | 153 | 47 | 3 | 1 | 152 | 1 | 145 | 3.75e-58 | 182 |
MsG0680030324.01.T01 | MTR_6g011200 | 53.723 | 188 | 61 | 3 | 1 | 169 | 1 | 181 | 3.78e-58 | 182 |
MsG0680030324.01.T01 | MTR_6g004550 | 83.607 | 122 | 16 | 1 | 37 | 158 | 1 | 118 | 4.59e-57 | 176 |
MsG0680030324.01.T01 | MTR_4g099230 | 61.429 | 140 | 42 | 3 | 10 | 149 | 3 | 130 | 4.43e-54 | 169 |
MsG0680030324.01.T01 | MTR_6g011250 | 56.552 | 145 | 53 | 2 | 1 | 142 | 1 | 138 | 5.94e-53 | 167 |
MsG0680030324.01.T01 | MTR_6g011230 | 55.634 | 142 | 56 | 3 | 1 | 140 | 1 | 137 | 2.53e-48 | 155 |
MsG0680030324.01.T01 | MTR_4g107450 | 51.402 | 107 | 51 | 1 | 8 | 114 | 9 | 114 | 2.09e-32 | 117 |
MsG0680030324.01.T01 | MTR_8g017090 | 52.336 | 107 | 50 | 1 | 8 | 114 | 11 | 116 | 6.58e-31 | 114 |
MsG0680030324.01.T01 | MTR_3g452660 | 45.536 | 112 | 60 | 1 | 7 | 118 | 5 | 115 | 2.62e-27 | 104 |
MsG0680030324.01.T01 | MTR_7g033800 | 45.918 | 98 | 52 | 1 | 7 | 104 | 9 | 105 | 1.96e-26 | 99.4 |
MsG0680030324.01.T01 | MTR_2g100020 | 44.954 | 109 | 59 | 1 | 8 | 116 | 18 | 125 | 2.91e-26 | 101 |
MsG0680030324.01.T01 | MTR_4g105170 | 38.806 | 134 | 70 | 2 | 7 | 140 | 9 | 130 | 4.16e-26 | 98.6 |
MsG0680030324.01.T01 | MTR_3g073690 | 44.118 | 102 | 56 | 1 | 10 | 111 | 10 | 110 | 1.57e-25 | 97.8 |
MsG0680030324.01.T01 | MTR_5g017950 | 43.810 | 105 | 58 | 1 | 7 | 111 | 6 | 109 | 2.24e-25 | 99.8 |
MsG0680030324.01.T01 | MTR_8g040900 | 49.398 | 83 | 41 | 1 | 7 | 89 | 5 | 86 | 3.30e-25 | 97.4 |
MsG0680030324.01.T01 | MTR_3g077240 | 44.898 | 98 | 53 | 1 | 7 | 104 | 8 | 104 | 6.80e-25 | 95.9 |
MsG0680030324.01.T01 | MTR_2g093310 | 34.940 | 166 | 105 | 3 | 10 | 174 | 34 | 197 | 2.09e-24 | 94.7 |
MsG0680030324.01.T01 | MTR_6g005070 | 42.857 | 98 | 55 | 1 | 7 | 104 | 7 | 103 | 1.20e-23 | 91.3 |
MsG0680030324.01.T01 | MTR_6g005080 | 41.837 | 98 | 56 | 1 | 7 | 104 | 8 | 104 | 4.68e-23 | 89.7 |
MsG0680030324.01.T01 | MTR_4g083680 | 38.168 | 131 | 79 | 2 | 10 | 140 | 16 | 144 | 5.85e-23 | 90.1 |
MsG0680030324.01.T01 | MTR_5g083230 | 37.931 | 116 | 70 | 2 | 7 | 122 | 4 | 117 | 2.79e-22 | 88.2 |
MsG0680030324.01.T01 | MTR_4g060950 | 40.000 | 130 | 74 | 4 | 10 | 138 | 25 | 151 | 3.06e-22 | 89.0 |
MsG0680030324.01.T01 | MTR_5g083010 | 36.697 | 109 | 68 | 1 | 5 | 113 | 7 | 114 | 3.94e-22 | 88.2 |
MsG0680030324.01.T01 | MTR_5g083960 | 32.031 | 128 | 86 | 1 | 10 | 137 | 40 | 166 | 4.91e-22 | 88.6 |
MsG0680030324.01.T01 | MTR_7g028905 | 37.273 | 110 | 68 | 1 | 10 | 119 | 6 | 114 | 8.87e-22 | 85.5 |
MsG0680030324.01.T01 | MTR_2g068760 | 37.037 | 108 | 67 | 1 | 10 | 117 | 14 | 120 | 2.32e-21 | 85.9 |
MsG0680030324.01.T01 | MTR_3g031660 | 32.099 | 162 | 100 | 3 | 10 | 163 | 8 | 167 | 3.58e-21 | 85.5 |
MsG0680030324.01.T01 | MTR_5g093010 | 34.545 | 110 | 71 | 1 | 10 | 119 | 6 | 114 | 7.25e-21 | 84.0 |
MsG0680030324.01.T01 | MTR_8g079660 | 39.423 | 104 | 62 | 1 | 8 | 111 | 7 | 109 | 2.15e-20 | 85.5 |
MsG0680030324.01.T01 | MTR_1g095850 | 36.585 | 123 | 74 | 3 | 10 | 131 | 73 | 192 | 2.24e-20 | 84.7 |
MsG0680030324.01.T01 | MTR_8g079620 | 39.423 | 104 | 62 | 1 | 8 | 111 | 7 | 109 | 3.02e-20 | 84.7 |
MsG0680030324.01.T01 | MTR_3g071420 | 40.594 | 101 | 55 | 2 | 5 | 105 | 10 | 105 | 3.20e-20 | 83.6 |
MsG0680030324.01.T01 | MTR_3g071590 | 39.423 | 104 | 61 | 2 | 10 | 113 | 9 | 110 | 7.35e-20 | 81.6 |
MsG0680030324.01.T01 | MTR_5g075020 | 32.824 | 131 | 83 | 2 | 10 | 140 | 44 | 169 | 2.36e-19 | 82.0 |
MsG0680030324.01.T01 | MTR_3g094690 | 36.735 | 98 | 61 | 1 | 10 | 107 | 48 | 144 | 2.58e-19 | 82.0 |
MsG0680030324.01.T01 | MTR_5g075020 | 32.824 | 131 | 83 | 2 | 10 | 140 | 48 | 173 | 3.12e-19 | 82.0 |
MsG0680030324.01.T01 | MTR_3g094690 | 35.714 | 98 | 61 | 1 | 10 | 107 | 48 | 143 | 3.74e-18 | 79.0 |
MsG0680030324.01.T01 | MTR_7g096530 | 39.806 | 103 | 60 | 2 | 10 | 111 | 15 | 116 | 6.75e-18 | 78.2 |
MsG0680030324.01.T01 | MTR_8g036105 | 35.780 | 109 | 68 | 2 | 4 | 111 | 13 | 120 | 1.65e-16 | 74.3 |
MsG0680030324.01.T01 | MTR_7g074990 | 36.364 | 99 | 61 | 2 | 10 | 107 | 21 | 118 | 5.89e-16 | 73.2 |
MsG0680030324.01.T01 | MTR_6g027710 | 34.314 | 102 | 65 | 2 | 10 | 110 | 41 | 141 | 1.47e-15 | 72.0 |
MsG0680030324.01.T01 | MTR_8g036085 | 34.951 | 103 | 65 | 2 | 10 | 111 | 24 | 125 | 1.49e-15 | 72.0 |
MsG0680030324.01.T01 | MTR_1g070220 | 36.364 | 99 | 61 | 2 | 10 | 107 | 16 | 113 | 4.16e-15 | 70.5 |
MsG0680030324.01.T01 | MTR_4g088035 | 37.500 | 88 | 54 | 1 | 9 | 96 | 6 | 92 | 9.02e-15 | 70.5 |
MsG0680030324.01.T01 | MTR_8g079580 | 35.577 | 104 | 65 | 2 | 8 | 110 | 7 | 109 | 2.48e-14 | 68.6 |
MsG0680030324.01.T01 | MTR_6g027700 | 33.929 | 112 | 65 | 3 | 10 | 120 | 8 | 111 | 2.71e-14 | 68.2 |
MsG0680030324.01.T01 | MTR_1g070205 | 34.000 | 100 | 64 | 2 | 10 | 108 | 13 | 111 | 5.66e-14 | 67.8 |
MsG0680030324.01.T01 | MTR_7g096610 | 28.834 | 163 | 90 | 6 | 10 | 168 | 9 | 149 | 1.00e-13 | 67.0 |
MsG0680030324.01.T01 | MTR_5g080470 | 29.091 | 110 | 76 | 2 | 8 | 116 | 6 | 114 | 1.37e-13 | 66.2 |
MsG0680030324.01.T01 | MTR_7g075230 | 34.906 | 106 | 65 | 3 | 10 | 112 | 13 | 117 | 1.45e-13 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680030324.01.T02 | AT3G47870 | 46.154 | 78 | 41 | 1 | 1 | 78 | 64 | 140 | 7.11e-15 | 70.1 |
MsG0680030324.01.T02 | AT3G13850 | 43.836 | 73 | 40 | 1 | 4 | 76 | 67 | 138 | 7.00e-12 | 61.6 |
MsG0680030324.01.T02 | AT5G63090 | 32.727 | 110 | 71 | 2 | 2 | 109 | 40 | 148 | 3.18e-11 | 58.5 |
MsG0680030324.01.T02 | AT5G63090 | 32.727 | 110 | 71 | 2 | 2 | 109 | 40 | 148 | 3.18e-11 | 58.5 |
MsG0680030324.01.T02 | AT5G63090 | 32.727 | 110 | 71 | 2 | 2 | 109 | 40 | 148 | 3.18e-11 | 58.5 |
MsG0680030324.01.T02 | AT5G63090 | 32.727 | 110 | 71 | 2 | 2 | 109 | 40 | 148 | 3.18e-11 | 58.5 |
MsG0680030324.01.T01 | AT3G47870 | 55.660 | 106 | 46 | 1 | 9 | 114 | 36 | 140 | 3.40e-36 | 128 |
MsG0680030324.01.T01 | AT3G13850 | 51.429 | 105 | 50 | 1 | 8 | 112 | 35 | 138 | 2.46e-30 | 111 |
MsG0680030324.01.T01 | AT5G63090 | 38.298 | 141 | 84 | 2 | 7 | 145 | 9 | 148 | 9.86e-27 | 100 |
MsG0680030324.01.T01 | AT5G63090 | 38.298 | 141 | 84 | 2 | 7 | 145 | 9 | 148 | 9.86e-27 | 100 |
MsG0680030324.01.T01 | AT5G63090 | 38.298 | 141 | 84 | 2 | 7 | 145 | 9 | 148 | 9.86e-27 | 100 |
MsG0680030324.01.T01 | AT5G63090 | 38.298 | 141 | 84 | 2 | 7 | 145 | 9 | 148 | 9.86e-27 | 100 |
MsG0680030324.01.T01 | AT3G27650 | 43.000 | 100 | 56 | 1 | 7 | 106 | 37 | 135 | 4.11e-25 | 95.5 |
MsG0680030324.01.T01 | AT1G65620 | 48.193 | 83 | 42 | 1 | 7 | 89 | 7 | 88 | 4.82e-24 | 93.6 |
MsG0680030324.01.T01 | AT1G65620 | 48.193 | 83 | 42 | 1 | 7 | 89 | 7 | 88 | 4.82e-24 | 93.6 |
MsG0680030324.01.T01 | AT1G65620 | 48.193 | 83 | 42 | 1 | 7 | 89 | 7 | 88 | 4.82e-24 | 93.6 |
MsG0680030324.01.T01 | AT1G65620 | 48.193 | 83 | 42 | 1 | 7 | 89 | 7 | 88 | 4.82e-24 | 93.6 |
MsG0680030324.01.T01 | AT1G65620 | 48.193 | 83 | 42 | 1 | 7 | 89 | 7 | 88 | 4.82e-24 | 93.6 |
MsG0680030324.01.T01 | AT5G66870 | 42.157 | 102 | 58 | 1 | 10 | 111 | 8 | 108 | 1.52e-23 | 94.7 |
MsG0680030324.01.T01 | AT3G26660 | 39.130 | 115 | 67 | 2 | 8 | 120 | 4 | 117 | 3.30e-23 | 89.4 |
MsG0680030324.01.T01 | AT1G31320 | 45.977 | 87 | 46 | 1 | 10 | 96 | 14 | 99 | 1.83e-22 | 89.0 |
MsG0680030324.01.T01 | AT3G26620 | 38.393 | 112 | 66 | 2 | 8 | 117 | 4 | 114 | 7.41e-22 | 85.9 |
MsG0680030324.01.T01 | AT1G72980 | 41.071 | 112 | 64 | 2 | 9 | 119 | 13 | 123 | 1.15e-21 | 87.8 |
MsG0680030324.01.T01 | AT1G07900 | 42.553 | 94 | 53 | 1 | 10 | 103 | 34 | 126 | 3.05e-21 | 86.3 |
MsG0680030324.01.T01 | AT2G28500 | 38.261 | 115 | 69 | 2 | 10 | 124 | 56 | 168 | 2.66e-20 | 84.7 |
MsG0680030324.01.T01 | AT2G23660 | 41.584 | 101 | 58 | 1 | 10 | 110 | 6 | 105 | 5.17e-20 | 85.5 |
MsG0680030324.01.T01 | AT2G23660 | 41.584 | 101 | 58 | 1 | 10 | 110 | 6 | 105 | 5.17e-20 | 85.5 |
MsG0680030324.01.T01 | AT2G23660 | 41.584 | 101 | 58 | 1 | 10 | 110 | 6 | 105 | 5.17e-20 | 85.5 |
MsG0680030324.01.T01 | AT2G30130 | 40.385 | 104 | 60 | 2 | 10 | 113 | 9 | 110 | 5.35e-20 | 83.2 |
MsG0680030324.01.T01 | AT3G11090 | 36.364 | 99 | 62 | 1 | 5 | 103 | 7 | 104 | 1.89e-19 | 80.9 |
MsG0680030324.01.T01 | AT2G30340 | 38.776 | 98 | 59 | 1 | 10 | 107 | 54 | 150 | 2.00e-19 | 83.2 |
MsG0680030324.01.T01 | AT2G30340 | 38.776 | 98 | 59 | 1 | 10 | 107 | 53 | 149 | 2.47e-19 | 82.8 |
MsG0680030324.01.T01 | AT5G15060 | 47.945 | 73 | 37 | 1 | 10 | 81 | 18 | 90 | 2.87e-19 | 79.7 |
MsG0680030324.01.T01 | AT2G40470 | 37.755 | 98 | 60 | 1 | 10 | 107 | 21 | 117 | 6.45e-19 | 80.5 |
MsG0680030324.01.T01 | AT1G16530 | 36.283 | 113 | 63 | 3 | 5 | 109 | 10 | 121 | 1.00e-18 | 79.0 |
MsG0680030324.01.T01 | AT2G40470 | 37.755 | 98 | 60 | 1 | 10 | 107 | 46 | 142 | 1.45e-18 | 80.1 |
MsG0680030324.01.T01 | AT1G06280 | 29.341 | 167 | 109 | 5 | 8 | 174 | 23 | 180 | 2.08e-17 | 76.6 |
MsG0680030324.01.T01 | AT3G50510 | 38.095 | 105 | 63 | 2 | 10 | 113 | 13 | 116 | 7.23e-17 | 75.1 |
MsG0680030324.01.T01 | AT3G50510 | 38.095 | 105 | 63 | 2 | 10 | 113 | 13 | 116 | 7.23e-17 | 75.1 |
MsG0680030324.01.T01 | AT2G19820 | 34.343 | 99 | 62 | 1 | 1 | 96 | 1 | 99 | 2.11e-16 | 72.0 |
MsG0680030324.01.T01 | AT4G00220 | 35.238 | 105 | 66 | 2 | 12 | 115 | 20 | 123 | 1.02e-15 | 72.4 |
MsG0680030324.01.T01 | AT4G00210 | 33.571 | 140 | 85 | 4 | 10 | 147 | 12 | 145 | 1.50e-15 | 72.0 |
MsG0680030324.01.T01 | AT2G42430 | 32.479 | 117 | 77 | 2 | 10 | 125 | 16 | 131 | 5.53e-15 | 70.9 |
MsG0680030324.01.T01 | AT2G45420 | 34.286 | 105 | 67 | 2 | 12 | 115 | 40 | 143 | 9.21e-15 | 70.5 |
MsG0680030324.01.T01 | AT2G42440 | 34.000 | 100 | 64 | 2 | 10 | 108 | 8 | 106 | 1.29e-14 | 69.7 |
MsG0680030324.01.T01 | AT3G58190 | 36.000 | 100 | 62 | 2 | 10 | 108 | 12 | 110 | 1.67e-14 | 68.9 |
MsG0680030324.01.T01 | AT3G03760 | 35.294 | 102 | 64 | 2 | 10 | 110 | 52 | 152 | 5.00e-14 | 68.6 |
MsG0680030324.01.T01 | AT5G35900 | 29.412 | 102 | 71 | 1 | 10 | 111 | 6 | 106 | 1.43e-13 | 66.2 |
MsG0680030324.01.T01 | AT2G31310 | 29.508 | 122 | 76 | 3 | 10 | 122 | 8 | 128 | 2.94e-13 | 65.1 |
MsG0680030324.01.T01 | AT5G06080 | 31.959 | 97 | 64 | 2 | 9 | 104 | 7 | 102 | 6.73e-13 | 63.9 |
MsG0680030324.01.T01 | AT2G45410 | 35.644 | 101 | 63 | 2 | 12 | 111 | 19 | 118 | 1.00e-12 | 63.9 |
Find 23 sgRNAs with CRISPR-Local
Find 31 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACCAACATTGCTAGATAT+TGG | 0.233878 | 6:+610339 | None:intergenic |
CTTTCTTCTTTGATATTTGC+AGG | 0.243555 | 6:+610734 | None:intergenic |
GGTTTATCGGCTGGAAAATA+AGG | 0.273342 | 6:+610687 | None:intergenic |
TCTTCTACATTTCTCTTCAT+TGG | 0.273693 | 6:-610409 | MsG0680030324.01.T01:CDS |
TGGATGTCTTGGTCTTATTA+TGG | 0.281895 | 6:-610520 | MsG0680030324.01.T01:CDS |
GCCAATGCTCATCGTTTGTT+TGG | 0.347008 | 6:-610654 | MsG0680030324.01.T01:CDS |
TAAGGAGCTAAAGGGCAATC+TGG | 0.416523 | 6:+610705 | None:intergenic |
ATATTCGAATTTGTATATGA+TGG | 0.420802 | 6:+610288 | None:intergenic |
ACCACTAGTTCTCAAATTCC+AGG | 0.434386 | 6:-610369 | MsG0680030324.01.T01:CDS |
TTCCCAAGTCATGGATGTCT+TGG | 0.482571 | 6:-610531 | MsG0680030324.01.T01:CDS |
GCTGGAAAATAAGGAGCTAA+AGG | 0.488184 | 6:+610696 | None:intergenic |
CTAGATATTGGATTAATACC+TGG | 0.493908 | 6:+610351 | None:intergenic |
CTGGAAAATAAGGAGCTAAA+GGG | 0.495690 | 6:+610697 | None:intergenic |
CTTTAGCGTCTTCACCATGT+TGG | 0.497302 | 6:+610626 | None:intergenic |
AATCCAATATCTAGCAATGT+TGG | 0.514330 | 6:-610342 | MsG0680030324.01.T01:CDS |
AGACCAAGACATCCATGACT+TGG | 0.541471 | 6:+610528 | None:intergenic |
ACCAAACAAACGATGAGCAT+TGG | 0.553402 | 6:+610653 | None:intergenic |
CGTGCAAGATTCCCAAGTCA+TGG | 0.565788 | 6:-610540 | MsG0680030324.01.T01:CDS |
GGAAATTTGTTGACATCATG+AGG | 0.566777 | 6:+610309 | None:intergenic |
ACCTGGAATTTGAGAACTAG+TGG | 0.587717 | 6:+610368 | None:intergenic |
GACCAAGACATCCATGACTT+GGG | 0.599785 | 6:+610529 | None:intergenic |
TTTGTTTGGTATTTCCAACA+TGG | 0.612102 | 6:-610640 | MsG0680030324.01.T01:CDS |
GGAATTTGAGAACTAGTGGT+AGG | 0.664884 | 6:+610372 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTCGAATATAAATTTTA+AGG | - | Chr6:610748-610767 | MsG0680030324.01.T01:CDS | 10.0% |
!!! | AATTCGAATATAAATTTTAA+GGG | - | Chr6:610749-610768 | MsG0680030324.01.T01:CDS | 10.0% |
!! | ATATTCGAATTTGTATATGA+TGG | + | Chr6:610740-610759 | None:intergenic | 20.0% |
!!! | ATATAAATTTTAAGGGTACA+TGG | - | Chr6:610756-610775 | MsG0680030324.01.T01:CDS | 20.0% |
AATCCAATATCTAGCAATGT+TGG | - | Chr6:610683-610702 | MsG0680030324.01.T01:CDS | 30.0% | |
CTAGATATTGGATTAATACC+TGG | + | Chr6:610677-610696 | None:intergenic | 30.0% | |
CTTTCTTCTTTGATATTTGC+AGG | + | Chr6:610294-610313 | None:intergenic | 30.0% | |
GGATATTCACAGAAAAAACA+AGG | - | Chr6:610259-610278 | MsG0680030324.01.T01:CDS | 30.0% | |
TCTTCTACATTTCTCTTCAT+TGG | - | Chr6:610616-610635 | MsG0680030324.01.T01:CDS | 30.0% | |
TTACCAACATTGCTAGATAT+TGG | + | Chr6:610689-610708 | None:intergenic | 30.0% | |
TTTGTTTGGTATTTCCAACA+TGG | - | Chr6:610385-610404 | MsG0680030324.01.T01:CDS | 30.0% | |
!!! | GAAGTCGATTATTTTTGAGT+CGG | - | Chr6:610457-610476 | MsG0680030324.01.T01:CDS | 30.0% |
CTGGAAAATAAGGAGCTAAA+GGG | + | Chr6:610331-610350 | None:intergenic | 35.0% | |
!! | GGAAATTTGTTGACATCATG+AGG | + | Chr6:610719-610738 | None:intergenic | 35.0% |
!! | TGGATGTCTTGGTCTTATTA+TGG | - | Chr6:610505-610524 | MsG0680030324.01.T01:CDS | 35.0% |
ACCAAACAAACGATGAGCAT+TGG | + | Chr6:610375-610394 | None:intergenic | 40.0% | |
ACCTGGAATTTGAGAACTAG+TGG | + | Chr6:610660-610679 | None:intergenic | 40.0% | |
GCTGGAAAATAAGGAGCTAA+AGG | + | Chr6:610332-610351 | None:intergenic | 40.0% | |
GGAATTTGAGAACTAGTGGT+AGG | + | Chr6:610656-610675 | None:intergenic | 40.0% | |
! | ACCACTAGTTCTCAAATTCC+AGG | - | Chr6:610656-610675 | MsG0680030324.01.T01:CDS | 40.0% |
! | GGTTTATCGGCTGGAAAATA+AGG | + | Chr6:610341-610360 | None:intergenic | 40.0% |
AGACCAAGACATCCATGACT+TGG | + | Chr6:610500-610519 | None:intergenic | 45.0% | |
CTTTAGCGTCTTCACCATGT+TGG | + | Chr6:610402-610421 | None:intergenic | 45.0% | |
GACCAAGACATCCATGACTT+GGG | + | Chr6:610499-610518 | None:intergenic | 45.0% | |
GCCAATGCTCATCGTTTGTT+TGG | - | Chr6:610371-610390 | MsG0680030324.01.T01:CDS | 45.0% | |
TAAGGAGCTAAAGGGCAATC+TGG | + | Chr6:610323-610342 | None:intergenic | 45.0% | |
TTCCCAAGTCATGGATGTCT+TGG | - | Chr6:610494-610513 | MsG0680030324.01.T01:CDS | 45.0% | |
! | AGCATTTTCGGTTTATCGGC+TGG | + | Chr6:610350-610369 | None:intergenic | 45.0% |
! | GGCGAGCATTTTCGGTTTAT+CGG | + | Chr6:610354-610373 | None:intergenic | 45.0% |
!!! | TGAGCATTGGCGAGCATTTT+CGG | + | Chr6:610362-610381 | None:intergenic | 45.0% |
CGTGCAAGATTCCCAAGTCA+TGG | - | Chr6:610485-610504 | MsG0680030324.01.T01:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 610257 | 610790 | 610257 | ID=MsG0680030324.01;Name=MsG0680030324.01 |
Chr6 | mRNA | 610257 | 610790 | 610257 | ID=MsG0680030324.01.T01;Parent=MsG0680030324.01;Name=MsG0680030324.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|177 |
Chr6 | exon | 610257 | 610790 | 610257 | ID=MsG0680030324.01.T01:exon:2191;Parent=MsG0680030324.01.T01 |
Chr6 | CDS | 610257 | 610790 | 610257 | ID=MsG0680030324.01.T01:cds;Parent=MsG0680030324.01.T01 |
Chr6 | mRNA | 610257 | 610682 | 610257 | ID=MsG0680030324.01.T02;Parent=MsG0680030324.01;Name=MsG0680030324.01.T02;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|141 |
Chr6 | exon | 610257 | 610682 | 610257 | ID=MsG0680030324.01.T02:exon:2192;Parent=MsG0680030324.01.T02 |
Chr6 | CDS | 610257 | 610682 | 610257 | ID=MsG0680030324.01.T02:cds;Parent=MsG0680030324.01.T02 |
Gene Sequence |
Protein sequence |