Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030500.01.T01 | XP_039682893.1 | 90.619 | 565 | 52 | 1 | 1 | 564 | 1 | 565 | 0 | 1035 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030500.01.T01 | Q9T0G7 | 49.464 | 560 | 239 | 13 | 34 | 573 | 115 | 650 | 1.30E-175 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030500.01.T01 | A0A396HFL4 | 90.619 | 565 | 52 | 1 | 1 | 564 | 1 | 565 | 0.0 | 1035 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0680030500.01.T01 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030500.01.T01 | MTR_6g044690 | 90.619 | 565 | 52 | 1 | 1 | 564 | 1 | 565 | 0.0 | 1034 |
| MsG0680030500.01.T01 | MTR_0376s0030 | 74.699 | 581 | 136 | 4 | 1 | 573 | 1 | 578 | 0.0 | 874 |
| MsG0680030500.01.T01 | MTR_6g043960 | 84.692 | 503 | 57 | 1 | 62 | 564 | 1 | 483 | 0.0 | 872 |
| MsG0680030500.01.T01 | MTR_2g054460 | 77.649 | 519 | 56 | 3 | 52 | 564 | 1 | 465 | 0.0 | 801 |
| MsG0680030500.01.T01 | MTR_1g035420 | 59.455 | 587 | 188 | 12 | 5 | 573 | 105 | 659 | 0.0 | 660 |
| MsG0680030500.01.T01 | MTR_8g070070 | 51.200 | 625 | 223 | 12 | 12 | 571 | 160 | 767 | 0.0 | 599 |
| MsG0680030500.01.T01 | MTR_8g070075 | 49.186 | 614 | 241 | 14 | 12 | 569 | 160 | 758 | 0.0 | 566 |
| MsG0680030500.01.T01 | MTR_8g071030 | 49.584 | 601 | 247 | 12 | 12 | 571 | 162 | 747 | 0.0 | 562 |
| MsG0680030500.01.T01 | MTR_1g035400 | 55.597 | 536 | 201 | 10 | 55 | 573 | 63 | 578 | 0.0 | 558 |
| MsG0680030500.01.T01 | MTR_7g088370 | 39.583 | 480 | 252 | 10 | 100 | 565 | 227 | 682 | 1.07e-100 | 320 |
| MsG0680030500.01.T01 | MTR_8g042750 | 35.917 | 529 | 285 | 15 | 60 | 567 | 167 | 662 | 3.93e-94 | 303 |
| MsG0680030500.01.T01 | MTR_4g010830 | 38.689 | 473 | 240 | 13 | 109 | 561 | 507 | 949 | 8.00e-90 | 298 |
| MsG0680030500.01.T01 | MTR_5g013420 | 38.229 | 497 | 264 | 14 | 85 | 561 | 585 | 1058 | 5.34e-89 | 297 |
| MsG0680030500.01.T01 | MTR_5g013420 | 38.229 | 497 | 264 | 14 | 85 | 561 | 585 | 1058 | 5.88e-89 | 297 |
| MsG0680030500.01.T01 | MTR_3g011440 | 34.799 | 523 | 295 | 13 | 60 | 564 | 141 | 635 | 1.18e-88 | 288 |
| MsG0680030500.01.T01 | MTR_6g061270 | 35.041 | 488 | 270 | 12 | 109 | 565 | 196 | 667 | 3.68e-81 | 268 |
| MsG0680030500.01.T01 | MTR_4g010550 | 35.892 | 482 | 232 | 16 | 98 | 561 | 11 | 433 | 2.88e-80 | 260 |
| MsG0680030500.01.T01 | MTR_7g084090 | 35.163 | 492 | 285 | 12 | 99 | 565 | 248 | 730 | 4.16e-80 | 267 |
| MsG0680030500.01.T01 | MTR_6g061200 | 34.864 | 479 | 254 | 16 | 109 | 565 | 196 | 638 | 1.71e-73 | 247 |
| MsG0680030500.01.T01 | MTR_7g084090 | 37.135 | 377 | 200 | 11 | 99 | 451 | 248 | 611 | 1.86e-64 | 223 |
| MsG0680030500.01.T01 | MTR_6g044000 | 84.956 | 113 | 17 | 0 | 62 | 174 | 1 | 113 | 6.15e-59 | 194 |
| MsG0680030500.01.T01 | MTR_6g044000 | 96.296 | 54 | 2 | 0 | 511 | 564 | 117 | 170 | 7.54e-31 | 118 |
| MsG0680030500.01.T01 | MTR_1g048950 | 32.892 | 453 | 250 | 11 | 130 | 561 | 88 | 507 | 2.40e-51 | 185 |
| MsG0680030500.01.T01 | MTR_7g445710 | 30.233 | 473 | 241 | 14 | 114 | 565 | 112 | 516 | 2.27e-50 | 182 |
| MsG0680030500.01.T01 | MTR_7g445530 | 29.449 | 472 | 238 | 13 | 114 | 561 | 112 | 512 | 7.56e-50 | 180 |
| MsG0680030500.01.T01 | MTR_7g450730 | 30.310 | 452 | 233 | 14 | 114 | 565 | 109 | 478 | 3.72e-46 | 170 |
| MsG0680030500.01.T01 | MTR_7g052480 | 29.063 | 320 | 195 | 13 | 263 | 565 | 225 | 529 | 1.39e-30 | 126 |
| MsG0680030500.01.T01 | MTR_7g445600 | 33.113 | 151 | 63 | 2 | 411 | 561 | 243 | 355 | 2.76e-21 | 95.9 |
| MsG0680030500.01.T01 | MTR_7g445600 | 34.711 | 121 | 73 | 3 | 114 | 233 | 108 | 223 | 5.70e-12 | 67.8 |
| MsG0680030500.01.T01 | MTR_5g018850 | 28.283 | 297 | 163 | 11 | 305 | 566 | 1207 | 1488 | 7.19e-20 | 94.7 |
| MsG0680030500.01.T01 | MTR_8g078505 | 29.609 | 179 | 112 | 3 | 386 | 564 | 354 | 518 | 2.84e-19 | 91.7 |
| MsG0680030500.01.T01 | MTR_1g069570 | 25.325 | 308 | 164 | 10 | 309 | 565 | 430 | 722 | 1.50e-18 | 90.1 |
| MsG0680030500.01.T01 | MTR_4g132610 | 28.934 | 197 | 109 | 4 | 379 | 565 | 852 | 1027 | 2.76e-18 | 89.4 |
| MsG0680030500.01.T01 | MTR_8g078490 | 28.426 | 197 | 110 | 4 | 379 | 565 | 1058 | 1233 | 8.55e-18 | 88.2 |
| MsG0680030500.01.T01 | MTR_1g080340 | 27.500 | 240 | 147 | 9 | 333 | 565 | 343 | 562 | 1.26e-17 | 86.7 |
| MsG0680030500.01.T01 | MTR_7g098390 | 28.571 | 175 | 110 | 5 | 391 | 563 | 515 | 676 | 6.98e-15 | 78.2 |
| MsG0680030500.01.T01 | MTR_1g069570 | 25.954 | 262 | 129 | 9 | 309 | 520 | 430 | 676 | 2.27e-14 | 76.6 |
| MsG0680030500.01.T01 | MTR_5g098680 | 32.484 | 157 | 86 | 4 | 137 | 280 | 267 | 416 | 1.23e-13 | 74.3 |
| MsG0680030500.01.T01 | MTR_4g131630 | 59.615 | 52 | 18 | 1 | 508 | 559 | 1 | 49 | 4.22e-12 | 61.6 |
| MsG0680030500.01.T01 | MTR_8g102580 | 30.573 | 157 | 89 | 4 | 137 | 280 | 261 | 410 | 2.09e-11 | 67.4 |
| MsG0680030500.01.T01 | MTR_7g445810 | 29.801 | 151 | 97 | 3 | 114 | 261 | 125 | 269 | 2.60e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030500.01.T01 | AT4G13460 | 49.464 | 560 | 239 | 13 | 34 | 573 | 115 | 650 | 1.33e-176 | 514 |
| MsG0680030500.01.T01 | AT4G13460 | 49.464 | 560 | 239 | 13 | 34 | 573 | 115 | 650 | 1.33e-176 | 514 |
| MsG0680030500.01.T01 | AT2G33290 | 49.081 | 544 | 238 | 12 | 45 | 573 | 132 | 651 | 3.33e-172 | 503 |
| MsG0680030500.01.T01 | AT2G33290 | 49.081 | 544 | 238 | 12 | 45 | 573 | 132 | 651 | 3.33e-172 | 503 |
| MsG0680030500.01.T01 | AT2G33290 | 49.081 | 544 | 238 | 12 | 45 | 573 | 132 | 651 | 3.33e-172 | 503 |
| MsG0680030500.01.T01 | AT2G33290 | 49.081 | 544 | 238 | 12 | 45 | 573 | 132 | 651 | 3.33e-172 | 503 |
| MsG0680030500.01.T01 | AT5G04940 | 34.906 | 530 | 275 | 15 | 60 | 563 | 155 | 640 | 5.12e-85 | 278 |
| MsG0680030500.01.T01 | AT5G04940 | 34.906 | 530 | 275 | 15 | 60 | 563 | 155 | 640 | 5.12e-85 | 278 |
| MsG0680030500.01.T01 | AT2G22740 | 33.583 | 533 | 288 | 11 | 60 | 565 | 270 | 763 | 9.25e-85 | 280 |
| MsG0680030500.01.T01 | AT2G22740 | 33.583 | 533 | 288 | 11 | 60 | 565 | 270 | 763 | 9.25e-85 | 280 |
| MsG0680030500.01.T01 | AT2G35160 | 33.513 | 558 | 290 | 15 | 25 | 565 | 238 | 731 | 1.21e-83 | 276 |
| MsG0680030500.01.T01 | AT2G35160 | 33.513 | 558 | 290 | 15 | 25 | 565 | 274 | 767 | 3.39e-83 | 276 |
| MsG0680030500.01.T01 | AT2G35160 | 33.513 | 558 | 290 | 15 | 25 | 565 | 274 | 767 | 3.39e-83 | 276 |
| MsG0680030500.01.T01 | AT2G35160 | 33.513 | 558 | 290 | 15 | 25 | 565 | 274 | 767 | 3.39e-83 | 276 |
| MsG0680030500.01.T01 | AT2G35160 | 33.513 | 558 | 290 | 15 | 25 | 565 | 274 | 767 | 3.39e-83 | 276 |
| MsG0680030500.01.T01 | AT1G73100 | 37.421 | 473 | 256 | 14 | 114 | 566 | 190 | 642 | 3.72e-83 | 273 |
| MsG0680030500.01.T01 | AT5G13960 | 34.549 | 466 | 263 | 16 | 129 | 565 | 11 | 463 | 2.43e-75 | 248 |
| MsG0680030500.01.T01 | AT5G13960 | 34.286 | 490 | 271 | 17 | 109 | 565 | 126 | 597 | 3.08e-75 | 251 |
| MsG0680030500.01.T01 | AT1G17770 | 31.076 | 576 | 342 | 15 | 19 | 563 | 110 | 661 | 9.75e-74 | 249 |
| MsG0680030500.01.T01 | AT2G24740 | 36.495 | 485 | 252 | 18 | 109 | 571 | 285 | 735 | 1.54e-72 | 247 |
| MsG0680030500.01.T01 | AT5G47150 | 41.111 | 180 | 89 | 5 | 109 | 279 | 153 | 324 | 2.63e-31 | 124 |
| MsG0680030500.01.T01 | AT2G23740 | 33.508 | 191 | 102 | 5 | 379 | 562 | 1184 | 1356 | 1.44e-22 | 103 |
| MsG0680030500.01.T01 | AT2G23740 | 33.508 | 191 | 102 | 5 | 379 | 562 | 1184 | 1356 | 1.44e-22 | 103 |
| MsG0680030500.01.T01 | AT2G23740 | 33.508 | 191 | 102 | 5 | 379 | 562 | 1184 | 1356 | 1.44e-22 | 103 |
| MsG0680030500.01.T01 | AT2G23740 | 33.508 | 191 | 102 | 5 | 379 | 562 | 1177 | 1349 | 1.57e-22 | 103 |
| MsG0680030500.01.T01 | AT5G47160 | 37.017 | 181 | 96 | 6 | 106 | 276 | 236 | 408 | 2.88e-22 | 100 |
| MsG0680030500.01.T01 | AT5G47160 | 37.017 | 181 | 96 | 6 | 106 | 276 | 236 | 408 | 2.88e-22 | 100 |
| MsG0680030500.01.T01 | AT5G47160 | 37.017 | 181 | 96 | 6 | 106 | 276 | 236 | 408 | 2.88e-22 | 100 |
| MsG0680030500.01.T01 | AT3G03750 | 28.369 | 282 | 161 | 9 | 309 | 568 | 68 | 330 | 5.55e-20 | 92.0 |
| MsG0680030500.01.T01 | AT2G23740 | 35.570 | 149 | 71 | 5 | 379 | 520 | 1184 | 1314 | 3.63e-17 | 86.3 |
| MsG0680030500.01.T01 | AT2G23740 | 35.570 | 149 | 71 | 5 | 379 | 520 | 1184 | 1314 | 3.63e-17 | 86.3 |
| MsG0680030500.01.T01 | AT2G05900 | 33.333 | 198 | 115 | 9 | 150 | 337 | 1 | 191 | 4.46e-16 | 79.7 |
| MsG0680030500.01.T01 | AT1G57820 | 29.282 | 181 | 98 | 6 | 123 | 280 | 254 | 427 | 7.91e-13 | 71.6 |
| MsG0680030500.01.T01 | AT1G57820 | 29.282 | 181 | 98 | 6 | 123 | 280 | 254 | 427 | 7.91e-13 | 71.6 |
| MsG0680030500.01.T01 | AT1G57820 | 29.775 | 178 | 98 | 7 | 123 | 280 | 254 | 424 | 1.19e-12 | 71.2 |
Find 125 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTATGATCATGGTAAT+TGG | 0.190966 | 6:+4184683 | MsG0680030500.01.T01:CDS |
| ATAAAAGTTCCAGCTAAAAT+AGG | 0.203094 | 6:-4184400 | None:intergenic |
| CTCTGAGGAAGCAAGAATTT+TGG | 0.214710 | 6:-4184118 | None:intergenic |
| ATTGAATGTTGGTTTGAAAA+AGG | 0.222300 | 6:+4183854 | MsG0680030500.01.T01:CDS |
| TATTCGTGTGTCAGGTTTGC+TGG | 0.316438 | 6:+4183307 | MsG0680030500.01.T01:CDS |
| AGGATCATACTACCCATCTT+AGG | 0.317543 | 6:-4183929 | None:intergenic |
| TTTATAAGTTCATGTTATCT+AGG | 0.318238 | 6:+4183894 | MsG0680030500.01.T01:CDS |
| ACATAGGATTAGAACATAAT+TGG | 0.321952 | 6:-4183979 | None:intergenic |
| GACCTATTCAAAAGTCGATT+TGG | 0.328811 | 6:-4184508 | None:intergenic |
| AGAAACCGTGTGACACAAAA+AGG | 0.338747 | 6:+4184313 | MsG0680030500.01.T01:CDS |
| CCAGTTCCTGGTGTTTGTAT+TGG | 0.341157 | 6:+4183491 | MsG0680030500.01.T01:CDS |
| TGGAACGATGGCGCGCGATA+TGG | 0.343186 | 6:-4183117 | None:intergenic |
| CATGCTAGCATGAGTTCTAA+TGG | 0.367244 | 6:+4183590 | MsG0680030500.01.T01:CDS |
| TAAGCATACTTGCTTCCTTA+AGG | 0.369544 | 6:-4183949 | None:intergenic |
| ATGAGACTAGTTGGGGAGTT+AGG | 0.370168 | 6:+4184368 | MsG0680030500.01.T01:CDS |
| TATCTTGATAAGAAAATCAT+TGG | 0.372117 | 6:+4183467 | MsG0680030500.01.T01:CDS |
| AAAATCATTGGTCCAGTTCC+TGG | 0.372423 | 6:+4183479 | MsG0680030500.01.T01:CDS |
| TGTTATTCACTTCTTCTGTC+TGG | 0.373636 | 6:-4183385 | None:intergenic |
| ACTAATTGAACAAACACATT+TGG | 0.377806 | 6:-4184661 | None:intergenic |
| TGCAATATGAGATTGATGTT+AGG | 0.379723 | 6:+4183753 | MsG0680030500.01.T01:CDS |
| AAATCTACGCAGAAGCTTAG+AGG | 0.391723 | 6:+4183194 | MsG0680030500.01.T01:CDS |
| TGCGAAGGACAACTACAAAA+AGG | 0.399229 | 6:-4184286 | None:intergenic |
| TTTGATTCTATTCGTGTGTC+AGG | 0.403272 | 6:+4183299 | MsG0680030500.01.T01:CDS |
| TAGATCTAATGAGACTAGTT+GGG | 0.409391 | 6:+4184360 | MsG0680030500.01.T01:CDS |
| GAATAGGTCAACTCAAGAAT+GGG | 0.409837 | 6:+4184522 | MsG0680030500.01.T01:CDS |
| GCAATATGAGATTGATGTTA+GGG | 0.414210 | 6:+4183754 | MsG0680030500.01.T01:CDS |
| TAAAAGTTCCAGCTAAAATA+GGG | 0.417727 | 6:-4184399 | None:intergenic |
| CAGCAGCTATCAAGTCATTT+CGG | 0.419039 | 6:-4183415 | None:intergenic |
| TAGTTGGGGAGTTAGGTCTT+TGG | 0.423498 | 6:+4184375 | MsG0680030500.01.T01:CDS |
| GAACAAACACATTTGGAGTT+GGG | 0.430179 | 6:-4184654 | None:intergenic |
| CCATCTTATGTTATTTGCAA+TGG | 0.433181 | 6:+4184714 | MsG0680030500.01.T01:CDS |
| TGTATAAGATAATTGAATGT+TGG | 0.433790 | 6:+4183843 | MsG0680030500.01.T01:CDS |
| GAGTGTTGTGAATGCGTTGA+TGG | 0.434282 | 6:+4184172 | MsG0680030500.01.T01:CDS |
| GTCCGTATCGTGAGATGGTC+CGG | 0.436727 | 6:+4183261 | MsG0680030500.01.T01:CDS |
| TTAGATCTAATGAGACTAGT+TGG | 0.437286 | 6:+4184359 | MsG0680030500.01.T01:CDS |
| TGAATAGGTCAACTCAAGAA+TGG | 0.440960 | 6:+4184521 | MsG0680030500.01.T01:CDS |
| GGTTCAAGGTCAACCTAAGA+TGG | 0.441183 | 6:+4183916 | MsG0680030500.01.T01:CDS |
| TACAACAACAACACTCTGGC+GGG | 0.441267 | 6:+4183161 | MsG0680030500.01.T01:CDS |
| GTGTTGTCATTCATGATTGA+AGG | 0.442888 | 6:-4184202 | None:intergenic |
| CAATTAGTTCTCTATGATCA+TGG | 0.448311 | 6:+4184676 | MsG0680030500.01.T01:CDS |
| CCATTGCAAATAACATAAGA+TGG | 0.449331 | 6:-4184714 | None:intergenic |
| TGGTACTTCTACTACTAGTA+AGG | 0.451010 | 6:+4183802 | MsG0680030500.01.T01:CDS |
| AGAATAATCGTAAGAACAAA+AGG | 0.453219 | 6:+4183336 | MsG0680030500.01.T01:CDS |
| GATGGGTAGTATGATCCTTA+AGG | 0.457082 | 6:+4183934 | MsG0680030500.01.T01:CDS |
| ACTAGTGTGGTTGTGTCTGA+TGG | 0.461191 | 6:+4183626 | MsG0680030500.01.T01:CDS |
| CCAATACAAACACCAGGAAC+TGG | 0.467377 | 6:-4183491 | None:intergenic |
| TGAACAAACACATTTGGAGT+TGG | 0.468046 | 6:-4184655 | None:intergenic |
| CAAACAATATTCTTGTTCTC+CGG | 0.476545 | 6:-4183280 | None:intergenic |
| AGAAGTGAAATGTGTGTGAT+TGG | 0.479419 | 6:+4183530 | MsG0680030500.01.T01:CDS |
| ATTTCTGATGATATTTCCAA+TGG | 0.480319 | 6:+4184007 | MsG0680030500.01.T01:CDS |
| CAGAAGAAGTGAATAACAGC+AGG | 0.480616 | 6:+4183390 | MsG0680030500.01.T01:CDS |
| TCCAATGGGAAGGAGAATAT+CGG | 0.490604 | 6:+4184022 | MsG0680030500.01.T01:CDS |
| CATTGCAAATAACATAAGAT+GGG | 0.496606 | 6:-4184713 | None:intergenic |
| ACTTTACCTTATAGTAAAAG+TGG | 0.504320 | 6:+4184223 | MsG0680030500.01.T01:CDS |
| ACCGATATTCTCCTTCCCAT+TGG | 0.505724 | 6:-4184023 | None:intergenic |
| AAAAGGTATTAAATATAGGT+TGG | 0.507633 | 6:+4184330 | MsG0680030500.01.T01:CDS |
| TCAAGACTAAGCTCTCTCAT+TGG | 0.507939 | 6:-4184748 | None:intergenic |
| TGGAAGATACTCAAATTGCA+TGG | 0.512091 | 6:-4184083 | None:intergenic |
| AGAGTTATGTTCACCATCCA+TGG | 0.513297 | 6:-4184473 | None:intergenic |
| CACAACCACACTAGTAGCAA+TGG | 0.513662 | 6:-4183618 | None:intergenic |
| CTCGTCGGGAACTGGAACGA+TGG | 0.514539 | 6:-4183129 | None:intergenic |
| GGAGACAAAATTATCTACTC+TGG | 0.518712 | 6:+4183668 | MsG0680030500.01.T01:CDS |
| GATCATGGGGTAGAATTGAC+TGG | 0.518778 | 6:+4184769 | MsG0680030500.01.T01:CDS |
| TACACGGTCAACCACAAGCT+GGG | 0.519450 | 6:+4183555 | MsG0680030500.01.T01:CDS |
| AGAGAGCTTAGTCTTGATCA+TGG | 0.523319 | 6:+4184754 | MsG0680030500.01.T01:CDS |
| TTCATGTTATCTAGGGTTCA+AGG | 0.525879 | 6:+4183902 | MsG0680030500.01.T01:CDS |
| TGATGATATTTCCAATGGGA+AGG | 0.528993 | 6:+4184012 | MsG0680030500.01.T01:CDS |
| ATTGATGTTAGGGTTATTCG+AGG | 0.529934 | 6:+4183764 | MsG0680030500.01.T01:CDS |
| GAGAGCTTAGTCTTGATCAT+GGG | 0.530152 | 6:+4184755 | MsG0680030500.01.T01:CDS |
| TTATAAGTTCATGTTATCTA+GGG | 0.530619 | 6:+4183895 | MsG0680030500.01.T01:CDS |
| AGACTAAGCTCTCTCATTGG+AGG | 0.531678 | 6:-4184745 | None:intergenic |
| ACATCCAATGCAAAATCTAA+AGG | 0.535372 | 6:-4184592 | None:intergenic |
| CTCCCTAGTCAAAACAAGCC+CGG | 0.538168 | 6:-4184434 | None:intergenic |
| TGGCCATGGTGATGTGAAGC+AGG | 0.538907 | 6:+4183688 | MsG0680030500.01.T01:CDS |
| AAATCTAAAGGAGGATATGC+GGG | 0.546981 | 6:-4184580 | None:intergenic |
| TCATCAGAAATGACATACAT+AGG | 0.547565 | 6:-4183995 | None:intergenic |
| AATCTACGCAGAAGCTTAGA+GGG | 0.547861 | 6:+4183195 | MsG0680030500.01.T01:CDS |
| TGGGCTATGACTAATATAGC+TGG | 0.552213 | 6:-4184635 | None:intergenic |
| ACAACCACACTAGTAGCAAT+GGG | 0.558434 | 6:-4183617 | None:intergenic |
| GGAAGATACTCAAATTGCAT+GGG | 0.562606 | 6:-4184082 | None:intergenic |
| CTCCGGACCATCTCACGATA+CGG | 0.564668 | 6:-4183263 | None:intergenic |
| GGAGCTTGTTCGCACTGCGA+TGG | 0.569900 | 6:+4183226 | MsG0680030500.01.T01:CDS |
| TGTGAAGCAGGATCAGAAGT+TGG | 0.571544 | 6:+4183700 | MsG0680030500.01.T01:CDS |
| TCACCGTCCGTATCGTGAGA+TGG | 0.572522 | 6:+4183256 | MsG0680030500.01.T01:CDS |
| GGAACGAGGCAACCTTGCTA+TGG | 0.574021 | 6:+4183721 | MsG0680030500.01.T01:CDS |
| TTTCTGATGATATTTCCAAT+GGG | 0.579478 | 6:+4184008 | MsG0680030500.01.T01:CDS |
| AGATCTAATGAGACTAGTTG+GGG | 0.582316 | 6:+4184361 | MsG0680030500.01.T01:CDS |
| GGATATAATGATGATGATCA+AGG | 0.586899 | 6:+4183647 | MsG0680030500.01.T01:CDS |
| TTACACGGTCAACCACAAGC+TGG | 0.590249 | 6:+4183554 | MsG0680030500.01.T01:CDS |
| CTTTACCTTATAGTAAAAGT+GGG | 0.590971 | 6:+4184224 | MsG0680030500.01.T01:CDS |
| GACTAAGCTCTCTCATTGGA+GGG | 0.593113 | 6:-4184744 | None:intergenic |
| GCAATTTGAGTATCTTCCAA+AGG | 0.598627 | 6:+4184087 | MsG0680030500.01.T01:CDS |
| CTTGCTTCCTCAGAGCATGA+CGG | 0.602014 | 6:+4184126 | MsG0680030500.01.T01:CDS |
| AAATTACAACAACAACACTC+TGG | 0.603407 | 6:+4183157 | MsG0680030500.01.T01:CDS |
| GCATACTTGTCACCATAGCA+AGG | 0.603748 | 6:-4183733 | None:intergenic |
| GTTCAAGGTCAACCTAAGAT+GGG | 0.609539 | 6:+4183917 | MsG0680030500.01.T01:CDS |
| ACGATGGCGCGCGATATGGA+AGG | 0.611075 | 6:-4183113 | None:intergenic |
| GCTGCTTTGATGAATGATCA+TGG | 0.613817 | 6:+4183434 | MsG0680030500.01.T01:CDS |
| TTACAACAACAACACTCTGG+CGG | 0.620981 | 6:+4183160 | MsG0680030500.01.T01:CDS |
| GAAGCTTAGAGGGCAGAACA+AGG | 0.621471 | 6:+4183205 | MsG0680030500.01.T01:CDS |
| AAAATCTAAAGGAGGATATG+CGG | 0.621572 | 6:-4184581 | None:intergenic |
| TTCCTCTCCGTCATGCTCTG+AGG | 0.624992 | 6:-4184133 | None:intergenic |
| AAAATTATCTACTCTGGCCA+TGG | 0.625235 | 6:+4183674 | MsG0680030500.01.T01:CDS |
| ATTTGAGTATCTTCCAAAGG+CGG | 0.626193 | 6:+4184090 | MsG0680030500.01.T01:CDS |
| ACAACAACAACACTCTGGCG+GGG | 0.627123 | 6:+4183162 | MsG0680030500.01.T01:CDS |
| TCCAATGCAAAATCTAAAGG+AGG | 0.629567 | 6:-4184589 | None:intergenic |
| ATTGCAAATAACATAAGATG+GGG | 0.634153 | 6:-4184712 | None:intergenic |
| ACACGGTTTCTGCAATGCGA+AGG | 0.638201 | 6:-4184301 | None:intergenic |
| AGAGCTTAGTCTTGATCATG+GGG | 0.638779 | 6:+4184756 | MsG0680030500.01.T01:CDS |
| CCTACCCATTGCTACTAGTG+TGG | 0.640494 | 6:+4183613 | MsG0680030500.01.T01:CDS |
| GAAGCAAGTATGCTTAAGAG+AGG | 0.642544 | 6:+4183956 | MsG0680030500.01.T01:CDS |
| CATTGGATGTATCAACGATG+AGG | 0.644772 | 6:+4184605 | MsG0680030500.01.T01:CDS |
| AAATAATCAATCCCAGCTTG+TGG | 0.645273 | 6:-4183566 | None:intergenic |
| CGATGGCGCGCGATATGGAA+GGG | 0.646458 | 6:-4183112 | None:intergenic |
| CCACACTAGTAGCAATGGGT+AGG | 0.648972 | 6:-4183613 | None:intergenic |
| AGGTCATTAATTTATGAATG+CGG | 0.658707 | 6:+4184262 | MsG0680030500.01.T01:CDS |
| AATAGGTCAACTCAAGAATG+GGG | 0.659182 | 6:+4184523 | MsG0680030500.01.T01:CDS |
| TTCCTCAGAGCATGACGGAG+AGG | 0.663867 | 6:+4184131 | MsG0680030500.01.T01:CDS |
| ATATCACCAATACAAACACC+AGG | 0.674752 | 6:-4183497 | None:intergenic |
| CAGGATCAGAAGTTGGAACG+AGG | 0.676511 | 6:+4183707 | MsG0680030500.01.T01:CDS |
| GGAAGGAGAATATCGGTGTG+AGG | 0.681400 | 6:+4184029 | MsG0680030500.01.T01:CDS |
| GATCCTGCTTCACATCACCA+TGG | 0.681477 | 6:-4183691 | None:intergenic |
| GGACCATCTCACGATACGGA+CGG | 0.685403 | 6:-4183259 | None:intergenic |
| AGAAGAAGTGAATAACAGCA+GGG | 0.686932 | 6:+4183391 | MsG0680030500.01.T01:CDS |
| ATGTGTGTGATTGGTTTACA+CGG | 0.697183 | 6:+4183539 | MsG0680030500.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTTGATAAGAAAATCAT+TGG | + | Chr6:4183467-4183486 | MsG0680030500.01.T01:CDS | 20.0% |
| !! | TGTATAAGATAATTGAATGT+TGG | + | Chr6:4183843-4183862 | MsG0680030500.01.T01:CDS | 20.0% |
| !! | TTATAAGTTCATGTTATCTA+GGG | + | Chr6:4183895-4183914 | MsG0680030500.01.T01:CDS | 20.0% |
| !! | TTTATAAGTTCATGTTATCT+AGG | + | Chr6:4183894-4183913 | MsG0680030500.01.T01:CDS | 20.0% |
| !!! | AAAAGGTATTAAATATAGGT+TGG | + | Chr6:4184330-4184349 | MsG0680030500.01.T01:CDS | 20.0% |
| !!! | CACAAAAAGGTATTAAATAT+AGG | + | Chr6:4184326-4184345 | MsG0680030500.01.T01:CDS | 20.0% |
| ! | ACATAGGATTAGAACATAAT+TGG | - | Chr6:4183982-4184001 | None:intergenic | 25.0% |
| ! | ACTAATTGAACAAACACATT+TGG | - | Chr6:4184664-4184683 | None:intergenic | 25.0% |
| ! | ACTTTACCTTATAGTAAAAG+TGG | + | Chr6:4184223-4184242 | MsG0680030500.01.T01:CDS | 25.0% |
| ! | AGAATAATCGTAAGAACAAA+AGG | + | Chr6:4183336-4183355 | MsG0680030500.01.T01:CDS | 25.0% |
| ! | AGGTCATTAATTTATGAATG+CGG | + | Chr6:4184262-4184281 | MsG0680030500.01.T01:CDS | 25.0% |
| ! | ATAAAAGTTCCAGCTAAAAT+AGG | - | Chr6:4184403-4184422 | None:intergenic | 25.0% |
| ! | ATTGCAAATAACATAAGATG+GGG | - | Chr6:4184715-4184734 | None:intergenic | 25.0% |
| ! | ATTTCTGATGATATTTCCAA+TGG | + | Chr6:4184007-4184026 | MsG0680030500.01.T01:CDS | 25.0% |
| ! | CATTGCAAATAACATAAGAT+GGG | - | Chr6:4184716-4184735 | None:intergenic | 25.0% |
| ! | CTTTACCTTATAGTAAAAGT+GGG | + | Chr6:4184224-4184243 | MsG0680030500.01.T01:CDS | 25.0% |
| ! | TAAAAGTTCCAGCTAAAATA+GGG | - | Chr6:4184402-4184421 | None:intergenic | 25.0% |
| ! | TTTCTGATGATATTTCCAAT+GGG | + | Chr6:4184008-4184027 | MsG0680030500.01.T01:CDS | 25.0% |
| !!! | AAAAGTGGGTTTCTTTTAAA+AGG | + | Chr6:4184238-4184257 | MsG0680030500.01.T01:CDS | 25.0% |
| !!! | AAAGTGGGTTTCTTTTAAAA+GGG | + | Chr6:4184239-4184258 | MsG0680030500.01.T01:CDS | 25.0% |
| !!! | AGTAAGGTTTTTGTTTATGA+TGG | + | Chr6:4183818-4183837 | MsG0680030500.01.T01:CDS | 25.0% |
| !!! | ATTGAATGTTGGTTTGAAAA+AGG | + | Chr6:4183854-4183873 | MsG0680030500.01.T01:CDS | 25.0% |
| AAAATCTAAAGGAGGATATG+CGG | - | Chr6:4184584-4184603 | None:intergenic | 30.0% | |
| AAATTACAACAACAACACTC+TGG | + | Chr6:4183157-4183176 | MsG0680030500.01.T01:CDS | 30.0% | |
| ACATCCAATGCAAAATCTAA+AGG | - | Chr6:4184595-4184614 | None:intergenic | 30.0% | |
| CAAACAATATTCTTGTTCTC+CGG | - | Chr6:4183283-4183302 | None:intergenic | 30.0% | |
| CCATTGCAAATAACATAAGA+TGG | - | Chr6:4184717-4184736 | None:intergenic | 30.0% | |
| GCAATATGAGATTGATGTTA+GGG | + | Chr6:4183754-4183773 | MsG0680030500.01.T01:CDS | 30.0% | |
| TCATCAGAAATGACATACAT+AGG | - | Chr6:4183998-4184017 | None:intergenic | 30.0% | |
| TGCAATATGAGATTGATGTT+AGG | + | Chr6:4183753-4183772 | MsG0680030500.01.T01:CDS | 30.0% | |
| TTAGATCTAATGAGACTAGT+TGG | + | Chr6:4184359-4184378 | MsG0680030500.01.T01:CDS | 30.0% | |
| TTCTCTATGATCATGGTAAT+TGG | + | Chr6:4184683-4184702 | MsG0680030500.01.T01:CDS | 30.0% | |
| ! | ACTTTTATATGTGAGTTCAC+CGG | + | Chr6:4184415-4184434 | MsG0680030500.01.T01:CDS | 30.0% |
| ! | CAATTAGTTCTCTATGATCA+TGG | + | Chr6:4184676-4184695 | MsG0680030500.01.T01:CDS | 30.0% |
| ! | CCATCTTATGTTATTTGCAA+TGG | + | Chr6:4184714-4184733 | MsG0680030500.01.T01:CDS | 30.0% |
| ! | GGATATAATGATGATGATCA+AGG | + | Chr6:4183647-4183666 | MsG0680030500.01.T01:CDS | 30.0% |
| ! | GGTTTGAAAAAGGTATATCT+GGG | + | Chr6:4183864-4183883 | MsG0680030500.01.T01:CDS | 30.0% |
| ! | GTTGTAATTTTGTAACTCGT+CGG | - | Chr6:4183147-4183166 | None:intergenic | 30.0% |
| ! | TAATACCTTTTTGTGTCACA+CGG | - | Chr6:4184321-4184340 | None:intergenic | 30.0% |
| ! | TAGATCTAATGAGACTAGTT+GGG | + | Chr6:4184360-4184379 | MsG0680030500.01.T01:CDS | 30.0% |
| ! | TGGTTTGAAAAAGGTATATC+TGG | + | Chr6:4183863-4183882 | MsG0680030500.01.T01:CDS | 30.0% |
| ! | TTGTAATTTTGTAACTCGTC+GGG | - | Chr6:4183146-4183165 | None:intergenic | 30.0% |
| !! | AGAAACCCACTTTTACTATA+AGG | - | Chr6:4184232-4184251 | None:intergenic | 30.0% |
| !! | ATCCAAATCGACTTTTGAAT+AGG | + | Chr6:4184506-4184525 | MsG0680030500.01.T01:CDS | 30.0% |
| AAAATTATCTACTCTGGCCA+TGG | + | Chr6:4183674-4183693 | MsG0680030500.01.T01:CDS | 35.0% | |
| AAATAATCAATCCCAGCTTG+TGG | - | Chr6:4183569-4183588 | None:intergenic | 35.0% | |
| AAATCTAAAGGAGGATATGC+GGG | - | Chr6:4184583-4184602 | None:intergenic | 35.0% | |
| AATAGGTCAACTCAAGAATG+GGG | + | Chr6:4184523-4184542 | MsG0680030500.01.T01:CDS | 35.0% | |
| AGAAGAAGTGAATAACAGCA+GGG | + | Chr6:4183391-4183410 | MsG0680030500.01.T01:CDS | 35.0% | |
| AGAAGTGAAATGTGTGTGAT+TGG | + | Chr6:4183530-4183549 | MsG0680030500.01.T01:CDS | 35.0% | |
| ATATCACCAATACAAACACC+AGG | - | Chr6:4183500-4183519 | None:intergenic | 35.0% | |
| ATTGATGTTAGGGTTATTCG+AGG | + | Chr6:4183764-4183783 | MsG0680030500.01.T01:CDS | 35.0% | |
| ATTTGAGTATCTTCCAAAGG+CGG | + | Chr6:4184090-4184109 | MsG0680030500.01.T01:CDS | 35.0% | |
| GAATAGGTCAACTCAAGAAT+GGG | + | Chr6:4184522-4184541 | MsG0680030500.01.T01:CDS | 35.0% | |
| GACCTATTCAAAAGTCGATT+TGG | - | Chr6:4184511-4184530 | None:intergenic | 35.0% | |
| GCAATTTGAGTATCTTCCAA+AGG | + | Chr6:4184087-4184106 | MsG0680030500.01.T01:CDS | 35.0% | |
| GGAAGATACTCAAATTGCAT+GGG | - | Chr6:4184085-4184104 | None:intergenic | 35.0% | |
| GGAGACAAAATTATCTACTC+TGG | + | Chr6:4183668-4183687 | MsG0680030500.01.T01:CDS | 35.0% | |
| GTGTTGTCATTCATGATTGA+AGG | - | Chr6:4184205-4184224 | None:intergenic | 35.0% | |
| TAAGCATACTTGCTTCCTTA+AGG | - | Chr6:4183952-4183971 | None:intergenic | 35.0% | |
| TCCAATGCAAAATCTAAAGG+AGG | - | Chr6:4184592-4184611 | None:intergenic | 35.0% | |
| TGAATAGGTCAACTCAAGAA+TGG | + | Chr6:4184521-4184540 | MsG0680030500.01.T01:CDS | 35.0% | |
| TGATGATATTTCCAATGGGA+AGG | + | Chr6:4184012-4184031 | MsG0680030500.01.T01:CDS | 35.0% | |
| TGGAAGATACTCAAATTGCA+TGG | - | Chr6:4184086-4184105 | None:intergenic | 35.0% | |
| TGGTACTTCTACTACTAGTA+AGG | + | Chr6:4183802-4183821 | MsG0680030500.01.T01:CDS | 35.0% | |
| TGTTATTCACTTCTTCTGTC+TGG | - | Chr6:4183388-4183407 | None:intergenic | 35.0% | |
| TTTGATTCTATTCGTGTGTC+AGG | + | Chr6:4183299-4183318 | MsG0680030500.01.T01:CDS | 35.0% | |
| ! | AGATCTAATGAGACTAGTTG+GGG | + | Chr6:4184361-4184380 | MsG0680030500.01.T01:CDS | 35.0% |
| ! | CTTTTATATGTGAGTTCACC+GGG | + | Chr6:4184416-4184435 | MsG0680030500.01.T01:CDS | 35.0% |
| ! | GAAAAAGGTATATCTGGGTT+TGG | + | Chr6:4183869-4183888 | MsG0680030500.01.T01:CDS | 35.0% |
| ! | GAACAAACACATTTGGAGTT+GGG | - | Chr6:4184657-4184676 | None:intergenic | 35.0% |
| ! | TCCTCCTTTAGATTTTGCAT+TGG | + | Chr6:4184588-4184607 | MsG0680030500.01.T01:CDS | 35.0% |
| ! | TGAACAAACACATTTGGAGT+TGG | - | Chr6:4184658-4184677 | None:intergenic | 35.0% |
| ! | TTAGGGTTATTCGAGGTTTT+CGG | + | Chr6:4183771-4183790 | MsG0680030500.01.T01:CDS | 35.0% |
| ! | TTCATGTTATCTAGGGTTCA+AGG | + | Chr6:4183902-4183921 | MsG0680030500.01.T01:CDS | 35.0% |
| !! | ATGTGTGTGATTGGTTTACA+CGG | + | Chr6:4183539-4183558 | MsG0680030500.01.T01:CDS | 35.0% |
| AAAATCATTGGTCCAGTTCC+TGG | + | Chr6:4183479-4183498 | MsG0680030500.01.T01:CDS | 40.0% | |
| AAATCTACGCAGAAGCTTAG+AGG | + | Chr6:4183194-4183213 | MsG0680030500.01.T01:CDS | 40.0% | |
| AATCTACGCAGAAGCTTAGA+GGG | + | Chr6:4183195-4183214 | MsG0680030500.01.T01:CDS | 40.0% | |
| ACAACCACACTAGTAGCAAT+GGG | - | Chr6:4183620-4183639 | None:intergenic | 40.0% | |
| AGAAACCGTGTGACACAAAA+AGG | + | Chr6:4184313-4184332 | MsG0680030500.01.T01:CDS | 40.0% | |
| AGAGTTATGTTCACCATCCA+TGG | - | Chr6:4184476-4184495 | None:intergenic | 40.0% | |
| AGGATCATACTACCCATCTT+AGG | - | Chr6:4183932-4183951 | None:intergenic | 40.0% | |
| CAGAAGAAGTGAATAACAGC+AGG | + | Chr6:4183390-4183409 | MsG0680030500.01.T01:CDS | 40.0% | |
| CAGCAGCTATCAAGTCATTT+CGG | - | Chr6:4183418-4183437 | None:intergenic | 40.0% | |
| CATTGGATGTATCAACGATG+AGG | + | Chr6:4184605-4184624 | MsG0680030500.01.T01:CDS | 40.0% | |
| GAAGCAAGTATGCTTAAGAG+AGG | + | Chr6:4183956-4183975 | MsG0680030500.01.T01:CDS | 40.0% | |
| GACGGAGAGGAAAAATAAGA+GGG | + | Chr6:4184144-4184163 | MsG0680030500.01.T01:CDS | 40.0% | |
| GATGGGTAGTATGATCCTTA+AGG | + | Chr6:4183934-4183953 | MsG0680030500.01.T01:CDS | 40.0% | |
| GTTCAAGGTCAACCTAAGAT+GGG | + | Chr6:4183917-4183936 | MsG0680030500.01.T01:CDS | 40.0% | |
| TCAAGACTAAGCTCTCTCAT+TGG | - | Chr6:4184751-4184770 | None:intergenic | 40.0% | |
| TCCAATGGGAAGGAGAATAT+CGG | + | Chr6:4184022-4184041 | MsG0680030500.01.T01:CDS | 40.0% | |
| TGACGGAGAGGAAAAATAAG+AGG | + | Chr6:4184143-4184162 | MsG0680030500.01.T01:CDS | 40.0% | |
| TGCGAAGGACAACTACAAAA+AGG | - | Chr6:4184289-4184308 | None:intergenic | 40.0% | |
| TGGGCTATGACTAATATAGC+TGG | - | Chr6:4184638-4184657 | None:intergenic | 40.0% | |
| TTACAACAACAACACTCTGG+CGG | + | Chr6:4183160-4183179 | MsG0680030500.01.T01:CDS | 40.0% | |
| ! | ATTCGAGGTTTTCGGTATGA+AGG | + | Chr6:4183779-4183798 | MsG0680030500.01.T01:CDS | 40.0% |
| ! | CATGCTAGCATGAGTTCTAA+TGG | + | Chr6:4183590-4183609 | MsG0680030500.01.T01:CDS | 40.0% |
| ! | GAGGAAAAATAAGAGGGTGT+TGG | + | Chr6:4184150-4184169 | MsG0680030500.01.T01:CDS | 40.0% |
| ! | GCTGCTTTGATGAATGATCA+TGG | + | Chr6:4183434-4183453 | MsG0680030500.01.T01:CDS | 40.0% |
| !! | AATTTTGGAAAAGCCGCCTT+TGG | - | Chr6:4184106-4184125 | None:intergenic | 40.0% |
| !! | AGAGAGCTTAGTCTTGATCA+TGG | + | Chr6:4184754-4184773 | MsG0680030500.01.T01:CDS | 40.0% |
| !! | AGAGCTTAGTCTTGATCATG+GGG | + | Chr6:4184756-4184775 | MsG0680030500.01.T01:CDS | 40.0% |
| !! | CTCTGAGGAAGCAAGAATTT+TGG | - | Chr6:4184121-4184140 | None:intergenic | 40.0% |
| !! | GAGAGCTTAGTCTTGATCAT+GGG | + | Chr6:4184755-4184774 | MsG0680030500.01.T01:CDS | 40.0% |
| !! | GCAAGCGGAAATTTTAACCA+TGG | + | Chr6:4184456-4184475 | MsG0680030500.01.T01:CDS | 40.0% |
| !! | GCGGAAATTTTAACCATGGA+TGG | + | Chr6:4184460-4184479 | MsG0680030500.01.T01:CDS | 40.0% |
| !! | GTGGGTTTCTTTTAAAAGGG+AGG | + | Chr6:4184242-4184261 | MsG0680030500.01.T01:CDS | 40.0% |
| !!! | TCTTTGGACCCTATTTTAGC+TGG | + | Chr6:4184391-4184410 | MsG0680030500.01.T01:CDS | 40.0% |
| ACCGATATTCTCCTTCCCAT+TGG | - | Chr6:4184026-4184045 | None:intergenic | 45.0% | |
| ACTAGTGTGGTTGTGTCTGA+TGG | + | Chr6:4183626-4183645 | MsG0680030500.01.T01:CDS | 45.0% | |
| AGACTAAGCTCTCTCATTGG+AGG | - | Chr6:4184748-4184767 | None:intergenic | 45.0% | |
| CACAACCACACTAGTAGCAA+TGG | - | Chr6:4183621-4183640 | None:intergenic | 45.0% | |
| CCAATACAAACACCAGGAAC+TGG | - | Chr6:4183494-4183513 | None:intergenic | 45.0% | |
| CCAGTTCCTGGTGTTTGTAT+TGG | + | Chr6:4183491-4183510 | MsG0680030500.01.T01:CDS | 45.0% | |
| GACTAAGCTCTCTCATTGGA+GGG | - | Chr6:4184747-4184766 | None:intergenic | 45.0% | |
| GATCATGGGGTAGAATTGAC+TGG | + | Chr6:4184769-4184788 | MsG0680030500.01.T01:CDS | 45.0% | |
| GCATACTTGTCACCATAGCA+AGG | - | Chr6:4183736-4183755 | None:intergenic | 45.0% | |
| GGTTCAAGGTCAACCTAAGA+TGG | + | Chr6:4183916-4183935 | MsG0680030500.01.T01:CDS | 45.0% | |
| TACAACAACAACACTCTGGC+GGG | + | Chr6:4183161-4183180 | MsG0680030500.01.T01:CDS | 45.0% | |
| TAGTTGGGGAGTTAGGTCTT+TGG | + | Chr6:4184375-4184394 | MsG0680030500.01.T01:CDS | 45.0% | |
| TATTCGTGTGTCAGGTTTGC+TGG | + | Chr6:4183307-4183326 | MsG0680030500.01.T01:CDS | 45.0% | |
| TGTGAAGCAGGATCAGAAGT+TGG | + | Chr6:4183700-4183719 | MsG0680030500.01.T01:CDS | 45.0% | |
| ! | ATGAGACTAGTTGGGGAGTT+AGG | + | Chr6:4184368-4184387 | MsG0680030500.01.T01:CDS | 45.0% |
| ! | GAGTGTTGTGAATGCGTTGA+TGG | + | Chr6:4184172-4184191 | MsG0680030500.01.T01:CDS | 45.0% |
| ! | TTTTGTAACTCGTCGGGAAC+TGG | - | Chr6:4183140-4183159 | None:intergenic | 45.0% |
| !!! | TGTTTTGACTAGGGAGCAAG+CGG | + | Chr6:4184441-4184460 | MsG0680030500.01.T01:CDS | 45.0% |
| ACAACAACAACACTCTGGCG+GGG | + | Chr6:4183162-4183181 | MsG0680030500.01.T01:CDS | 50.0% | |
| ACACGGTTTCTGCAATGCGA+AGG | - | Chr6:4184304-4184323 | None:intergenic | 50.0% | |
| CAGGATCAGAAGTTGGAACG+AGG | + | Chr6:4183707-4183726 | MsG0680030500.01.T01:CDS | 50.0% | |
| CCACACTAGTAGCAATGGGT+AGG | - | Chr6:4183616-4183635 | None:intergenic | 50.0% | |
| CCTACCCATTGCTACTAGTG+TGG | + | Chr6:4183613-4183632 | MsG0680030500.01.T01:CDS | 50.0% | |
| CTCCCTAGTCAAAACAAGCC+CGG | - | Chr6:4184437-4184456 | None:intergenic | 50.0% | |
| CTTGCTTCCTCAGAGCATGA+CGG | + | Chr6:4184126-4184145 | MsG0680030500.01.T01:CDS | 50.0% | |
| GAAGCTTAGAGGGCAGAACA+AGG | + | Chr6:4183205-4183224 | MsG0680030500.01.T01:CDS | 50.0% | |
| GATCCTGCTTCACATCACCA+TGG | - | Chr6:4183694-4183713 | None:intergenic | 50.0% | |
| GGAAGGAGAATATCGGTGTG+AGG | + | Chr6:4184029-4184048 | MsG0680030500.01.T01:CDS | 50.0% | |
| TACACGGTCAACCACAAGCT+GGG | + | Chr6:4183555-4183574 | MsG0680030500.01.T01:CDS | 50.0% | |
| TTACACGGTCAACCACAAGC+TGG | + | Chr6:4183554-4183573 | MsG0680030500.01.T01:CDS | 50.0% | |
| ! | CGAGGTTTTCGGTATGAAGG+TGG | + | Chr6:4183782-4183801 | MsG0680030500.01.T01:CDS | 50.0% |
| !!! | CACCGGGCTTGTTTTGACTA+GGG | + | Chr6:4184432-4184451 | MsG0680030500.01.T01:CDS | 50.0% |
| !!! | TCACCGGGCTTGTTTTGACT+AGG | + | Chr6:4184431-4184450 | MsG0680030500.01.T01:CDS | 50.0% |
| CTCCGGACCATCTCACGATA+CGG | - | Chr6:4183266-4183285 | None:intergenic | 55.0% | |
| GGAACGAGGCAACCTTGCTA+TGG | + | Chr6:4183721-4183740 | MsG0680030500.01.T01:CDS | 55.0% | |
| GGACCATCTCACGATACGGA+CGG | - | Chr6:4183262-4183281 | None:intergenic | 55.0% | |
| GTCCGTATCGTGAGATGGTC+CGG | + | Chr6:4183261-4183280 | MsG0680030500.01.T01:CDS | 55.0% | |
| TCACCGTCCGTATCGTGAGA+TGG | + | Chr6:4183256-4183275 | MsG0680030500.01.T01:CDS | 55.0% | |
| TTCCTCTCCGTCATGCTCTG+AGG | - | Chr6:4184136-4184155 | None:intergenic | 55.0% | |
| ! | TGGCCATGGTGATGTGAAGC+AGG | + | Chr6:4183688-4183707 | MsG0680030500.01.T01:CDS | 55.0% |
| ! | TTCCTCAGAGCATGACGGAG+AGG | + | Chr6:4184131-4184150 | MsG0680030500.01.T01:CDS | 55.0% |
| ACGATGGCGCGCGATATGGA+AGG | - | Chr6:4183116-4183135 | None:intergenic | 60.0% | |
| CGATGGCGCGCGATATGGAA+GGG | - | Chr6:4183115-4183134 | None:intergenic | 60.0% | |
| CTCGTCGGGAACTGGAACGA+TGG | - | Chr6:4183132-4183151 | None:intergenic | 60.0% | |
| TGGAACGATGGCGCGCGATA+TGG | - | Chr6:4183120-4183139 | None:intergenic | 60.0% | |
| ! | GGAGCTTGTTCGCACTGCGA+TGG | + | Chr6:4183226-4183245 | MsG0680030500.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 4183092 | 4184813 | 4183092 | ID=MsG0680030500.01;Name=MsG0680030500.01 |
| Chr6 | mRNA | 4183092 | 4184813 | 4183092 | ID=MsG0680030500.01.T01;Parent=MsG0680030500.01;Name=MsG0680030500.01.T01;_AED=0.40;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|573 |
| Chr6 | exon | 4183092 | 4184813 | 4183092 | ID=MsG0680030500.01.T01:exon:22989;Parent=MsG0680030500.01.T01 |
| Chr6 | CDS | 4183092 | 4184813 | 4183092 | ID=MsG0680030500.01.T01:cds;Parent=MsG0680030500.01.T01 |
| Gene Sequence |
| Protein sequence |
