AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030508.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030508.01.T01 MTR_6g043890 85.196 331 32 2 1 327 1 318 0.0 579
MsG0680030508.01.T01 MTR_6g043890 66.667 165 45 2 326 489 28 183 4.22e-70 227
MsG0680030508.01.T01 MTR_4g119990 65.232 302 91 3 1 293 1 297 9.01e-133 389
MsG0680030508.01.T01 MTR_4g119990 74.545 165 38 2 326 489 28 189 1.18e-76 245
MsG0680030508.01.T01 MTR_1g035440 60.643 249 68 2 1 219 1 249 7.93e-84 259
MsG0680030508.01.T01 MTR_1g035440 82.424 165 28 1 326 489 28 192 3.28e-70 224
MsG0680030508.01.T01 MTR_7g050710 29.936 314 172 10 13 296 11 306 3.35e-26 108
MsG0680030508.01.T01 MTR_7g050710 36.264 91 57 1 327 417 27 116 1.18e-13 72.4
MsG0680030508.01.T01 MTR_3g098790 31.900 279 172 8 13 284 11 278 7.51e-26 108
MsG0680030508.01.T01 MTR_3g098790 37.895 95 58 1 326 420 26 119 4.85e-14 73.6
MsG0680030508.01.T01 MTR_7g050560 28.115 313 184 9 1 296 1 289 8.77e-26 107
MsG0680030508.01.T01 MTR_7g050560 37.634 93 57 1 326 418 26 117 1.97e-13 71.6
MsG0680030508.01.T01 MTR_3g061310 27.682 289 175 10 13 292 10 273 5.84e-25 104
MsG0680030508.01.T01 MTR_3g061310 34.884 129 81 3 322 448 19 146 3.86e-16 79.3
MsG0680030508.01.T01 MTR_1g035640 29.104 268 169 8 20 284 10 259 1.38e-23 103
MsG0680030508.01.T01 MTR_1g035640 33.333 150 93 4 326 475 18 160 1.23e-15 79.7
MsG0680030508.01.T01 MTR_6g061070 25.541 462 268 17 12 403 15 470 1.71e-23 103
MsG0680030508.01.T01 MTR_6g061070 38.596 114 65 4 327 440 32 140 3.46e-15 78.2
MsG0680030508.01.T01 MTR_1g035460 28.975 283 168 8 31 291 2 273 3.54e-23 101
MsG0680030508.01.T01 MTR_1g035460 34.591 159 91 4 329 483 2 151 5.12e-19 89.4
MsG0680030508.01.T01 MTR_1g035570 25.542 415 268 14 20 413 10 404 3.10e-22 99.0
MsG0680030508.01.T01 MTR_1g035570 31.792 173 90 6 326 473 18 187 2.20e-14 75.5
MsG0680030508.01.T01 MTR_8g103940 25.166 302 184 9 13 292 37 318 5.38e-22 99.4
MsG0680030508.01.T01 MTR_8g103940 28.099 121 81 2 327 447 53 167 6.91e-11 64.7
MsG0680030508.01.T01 MTR_5g044670 26.316 323 184 8 1 295 1 297 1.07e-21 96.3
MsG0680030508.01.T01 MTR_5g044670 29.630 162 96 4 300 450 6 160 3.89e-14 73.9
MsG0680030508.01.T01 MTR_3g061370 33.728 169 104 4 322 483 16 183 2.51e-21 94.4
MsG0680030508.01.T01 MTR_3g061370 26.174 298 175 11 9 292 3 269 2.54e-19 88.6
MsG0680030508.01.T01 MTR_3g061290 44.037 109 56 3 13 121 10 113 3.56e-21 92.0
MsG0680030508.01.T01 MTR_3g061290 34.483 145 92 3 324 466 21 164 1.18e-19 87.4
MsG0680030508.01.T01 MTR_3g061320 27.797 295 161 9 13 292 10 267 5.08e-21 93.2
MsG0680030508.01.T01 MTR_3g061320 34.146 164 105 3 322 483 19 181 9.65e-21 92.4
MsG0680030508.01.T01 MTR_7g050580 28.283 297 182 8 13 296 11 289 6.72e-21 93.6
MsG0680030508.01.T01 MTR_7g050580 29.630 135 87 3 297 431 4 130 1.76e-11 65.5
MsG0680030508.01.T01 MTR_3g061340 29.617 287 157 12 14 291 11 261 2.40e-20 91.3
MsG0680030508.01.T01 MTR_3g061340 38.411 151 79 6 322 467 19 160 1.30e-18 86.3
MsG0680030508.01.T01 MTR_3g061350 26.531 294 171 9 13 292 10 272 2.71e-20 91.3
MsG0680030508.01.T01 MTR_3g061350 33.540 161 103 3 322 479 19 178 4.49e-20 90.9
MsG0680030508.01.T01 MTR_1g033740 41.441 111 60 4 12 122 19 124 1.45e-19 87.0
MsG0680030508.01.T01 MTR_1g033740 35.374 147 82 7 326 466 35 174 4.95e-17 79.7
MsG0680030508.01.T01 MTR_1g035480 41.748 103 56 3 12 114 14 112 3.31e-19 85.5
MsG0680030508.01.T01 MTR_1g035480 32.886 149 81 6 326 466 30 167 2.79e-17 80.1
MsG0680030508.01.T01 MTR_7g050720 43.689 103 57 1 13 115 8 109 3.41e-19 89.0
MsG0680030508.01.T01 MTR_7g050720 42.045 88 50 1 326 413 23 109 2.71e-14 74.3
MsG0680030508.01.T01 MTR_1g035620 26.429 280 170 8 15 286 9 260 4.36e-19 89.7
MsG0680030508.01.T01 MTR_1g035620 33.333 144 87 4 326 468 22 157 5.51e-13 70.9
MsG0680030508.01.T01 MTR_1g035520 28.267 329 156 14 31 326 88 369 1.13e-18 88.2
MsG0680030508.01.T01 MTR_1g035520 31.915 188 99 8 322 487 83 263 6.33e-13 70.5
MsG0680030508.01.T01 MTR_3g061330 30.357 168 110 3 322 483 19 185 2.54e-18 84.7
MsG0680030508.01.T01 MTR_3g061330 27.843 255 147 8 13 258 10 236 3.51e-17 81.6
MsG0680030508.01.T01 MTR_1g035510 35.099 151 83 6 329 472 2 144 3.01e-17 81.3
MsG0680030508.01.T01 MTR_1g035510 33.333 147 86 5 31 176 2 137 2.36e-15 75.5
MsG0680030508.01.T01 MTR_1g035470 37.190 121 65 4 329 442 2 118 4.30e-17 78.6
MsG0680030508.01.T01 MTR_1g035470 46.429 84 41 3 31 114 2 81 4.21e-16 75.5
MsG0680030508.01.T01 MTR_1g108780 22.571 319 212 9 19 310 1 311 4.32e-17 84.0
MsG0680030508.01.T01 MTR_1g108780 30.303 132 86 2 328 459 12 137 1.14e-12 70.5
MsG0680030508.01.T01 MTR_1g035500 37.097 124 64 4 1 114 1 120 9.82e-17 78.6
MsG0680030508.01.T01 MTR_1g035500 30.405 148 87 6 327 466 39 178 7.42e-15 73.2
MsG0680030508.01.T01 MTR_1g050845 24.820 278 161 7 15 284 9 246 1.31e-16 83.6
MsG0680030508.01.T01 MTR_1g050845 38.235 102 59 3 326 426 22 120 8.73e-12 68.2
MsG0680030508.01.T01 MTR_3g005490 31.481 162 96 5 326 474 34 193 8.62e-16 77.8
MsG0680030508.01.T01 MTR_3g005490 30.709 127 83 3 14 139 20 142 1.57e-13 71.2
MsG0680030508.01.T01 MTR_1g035650 39.000 100 58 2 15 114 9 105 1.65e-15 75.9
MsG0680030508.01.T01 MTR_1g035650 36.047 86 52 2 327 412 23 105 7.70e-11 62.0
MsG0680030508.01.T01 MTR_3g005495 26.259 278 174 10 218 474 143 410 5.98e-15 77.4
MsG0680030508.01.T01 MTR_3g005495 31.126 151 90 3 14 164 242 378 1.64e-13 72.8
MsG0680030508.01.T01 MTR_3g005480 33.071 127 80 3 14 139 20 142 8.11e-15 75.1
MsG0680030508.01.T01 MTR_3g005480 29.878 164 96 5 326 474 34 193 7.96e-14 72.0
MsG0680030508.01.T01 MTR_7g050590 25.694 288 182 10 31 296 2 279 9.48e-15 75.1
MsG0680030508.01.T01 MTR_7g050590 36.458 96 60 1 329 424 2 96 3.08e-13 70.9
MsG0680030508.01.T01 MTR_3g061220 37.615 109 52 2 13 121 10 102 1.28e-14 70.5
MsG0680030508.01.T01 MTR_3g061220 35.398 113 58 2 322 433 19 117 7.08e-12 62.8
MsG0680030508.01.T01 MTR_3g005460 35.211 142 80 5 12 142 259 399 4.77e-14 74.7
MsG0680030508.01.T01 MTR_3g005460 27.508 309 173 15 182 456 135 426 7.16e-12 68.2
MsG0680030508.01.T01 MTR_7g050640 35.922 103 65 1 14 116 12 113 4.83e-13 66.2
MsG0680030508.01.T01 MTR_5g070440 25.342 292 171 10 1 292 11 255 4.94e-13 69.7
MsG0680030508.01.T01 MTR_5g070440 30.841 107 73 1 326 432 34 139 3.11e-11 64.3
MsG0680030508.01.T01 MTR_1g021360 25.325 308 170 11 13 292 182 457 1.56e-12 70.1
MsG0680030508.01.T01 MTR_4g068320 33.929 112 71 2 15 124 6 116 7.69e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030508.01.T01 AT1G49475 37.391 115 70 2 15 129 34 146 3.65e-14 71.6
MsG0680030508.01.T01 AT1G49475 39.216 102 60 2 327 428 48 147 6.41e-14 70.9
MsG0680030508.01.T01 AT3G18960 32.353 102 68 1 15 116 30 130 6.94e-14 70.9
MsG0680030508.01.T01 AT3G18960 35.227 88 56 1 327 414 44 130 1.40e-12 67.0
MsG0680030508.01.T01 AT3G18960 32.353 102 68 1 15 116 30 130 7.04e-14 71.2
MsG0680030508.01.T01 AT3G18960 35.227 88 56 1 327 414 44 130 1.51e-12 67.0
MsG0680030508.01.T01 AT3G18990 22.360 322 202 8 15 292 6 323 7.40e-14 73.2
MsG0680030508.01.T01 AT3G18990 22.360 322 202 8 15 292 6 323 9.17e-14 73.2
MsG0680030508.01.T01 AT4G01580 29.412 102 71 1 15 116 30 130 2.24e-12 66.2
MsG0680030508.01.T01 AT4G01580 31.818 88 59 1 327 414 44 130 3.32e-11 62.8
MsG0680030508.01.T01 AT3G18960 33.333 90 59 1 325 414 5 93 6.02e-12 64.7
MsG0680030508.01.T01 AT3G18960 33.333 87 57 1 30 116 8 93 6.72e-11 61.6

Find 72 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCACAAGTTTCTCTTAA+AGG 0.175780 6:+4296844 None:intergenic
ACTTTCATTTGTGTCATATT+TGG 0.209359 6:+4297033 None:intergenic
GCTCACAATAATTTGAAATT+TGG 0.213375 6:-4295830 MsG0680030508.01.T01:intron
CTCTCTCAATGTGTGTCTTC+TGG 0.218908 6:+4296439 None:intergenic
TGCCTCCTCGCAAAACTTAT+TGG 0.225687 6:+4297093 None:intergenic
CTCTTTAATGTGATTGTATT+GGG 0.236526 6:-4291985 MsG0680030508.01.T01:CDS
GAAGACGGTGAAGGAGATTT+TGG 0.258435 6:+4291841 None:intergenic
TTTGGAAGCCTTAGAGTAAC+TGG 0.265708 6:+4292144 None:intergenic
ATTTGCAGATTATTTATCTT+TGG 0.272999 6:-4292049 MsG0680030508.01.T01:CDS
CTTCATTATCACCTGGTAAA+AGG 0.287609 6:-4296798 MsG0680030508.01.T01:CDS
TTCTATCTTGATCAACAAAA+AGG 0.293775 6:+4295924 None:intergenic
ACACATTGAGAGAGATCTTT+TGG 0.323525 6:-4296430 MsG0680030508.01.T01:intron
CATCACAAGTTTCTCTTAAA+GGG 0.327281 6:+4296845 None:intergenic
TTTGCAGATTATTTATCTTT+GGG 0.338012 6:-4292048 MsG0680030508.01.T01:CDS
TCTCTTTAATGTGATTGTAT+TGG 0.347950 6:-4291986 MsG0680030508.01.T01:CDS
TAGAACATGGAATGCTGATT+TGG 0.353140 6:-4295906 MsG0680030508.01.T01:CDS
TCTAATCGACCATCTTCAAT+AGG 0.374130 6:+4295085 None:intergenic
TTTGCGTGATTCACAACTTT+TGG 0.378903 6:-4296938 MsG0680030508.01.T01:CDS
TGTGTCTTCACAAATTCATT+TGG 0.382410 6:+4295977 None:intergenic
AAACCAGTGATTATGATGTT+TGG 0.387209 6:-4292092 MsG0680030508.01.T01:CDS
AAACCAGTGATTATGATGTT+TGG 0.387209 6:-4296999 MsG0680030508.01.T01:CDS
TAACAAACCCAGTCACTCTA+AGG 0.404015 6:-4297059 MsG0680030508.01.T01:CDS
CTCTTTGATGTGATTGTACT+CGG 0.404696 6:-4296892 MsG0680030508.01.T01:CDS
TATCCTTCAAGAAGGAAAAC+TGG 0.409944 6:-4297497 MsG0680030508.01.T01:intron
TAAAGATGTGGACAATGGTT+AGG 0.413600 6:-4291725 None:intergenic
TTTGGAAGCCTTAGAGTGAC+TGG 0.425843 6:+4297051 None:intergenic
CTTCAGTAGTTTCTTTCAAA+GGG 0.436590 6:+4291938 None:intergenic
TATGAAATCTTGCATGTGCT+TGG 0.460028 6:+4291752 None:intergenic
TGGTTCTTTGAAAGTTACTA+AGG 0.462573 6:-4296824 MsG0680030508.01.T01:CDS
TCTTCAGTAGTTTCTTTCAA+AGG 0.462956 6:+4291937 None:intergenic
CGACCGAAAAGAAAGTTACT+TGG 0.465223 6:-4292119 MsG0680030508.01.T01:CDS
CTTCATCATCGCGAGGTAAG+AGG 0.471748 6:-4291864 MsG0680030508.01.T01:CDS
TGACACAAATGAAAGTTACT+TGG 0.482529 6:-4297026 MsG0680030508.01.T01:CDS
ATGTCTTCTCACAAAACCTA+AGG 0.504643 6:+4292185 None:intergenic
CTCTTACCTCGCGATGATGA+AGG 0.507637 6:+4291865 None:intergenic
CATATGCACATGATGAAAGA+AGG 0.522234 6:-4295956 MsG0680030508.01.T01:CDS
ATCTCCATCACCTTGTGTGA+AGG 0.534503 6:-4296770 MsG0680030508.01.T01:CDS
AAACCAAACATCATAATCAC+TGG 0.538084 6:+4292089 None:intergenic
AAACCAAACATCATAATCAC+TGG 0.538084 6:+4296996 None:intergenic
TAATAGTCATGATGATATCA+AGG 0.538648 6:-4296535 MsG0680030508.01.T01:CDS
AAACAATTTGCACTAACAAG+TGG 0.561217 6:-4295869 MsG0680030508.01.T01:CDS
GTATGACAGAAAGTACCCTT+AGG 0.563021 6:-4292201 MsG0680030508.01.T01:intron
GACCGAAAAGAAAGTTACTT+GGG 0.563538 6:-4292118 MsG0680030508.01.T01:CDS
GACACAAATGAAAGTTACTT+GGG 0.564890 6:-4297025 MsG0680030508.01.T01:CDS
TGATACTTGCCTATTGAAGA+TGG 0.567074 6:-4295094 MsG0680030508.01.T01:intron
TTGTGTGAAGGTTTGTAAGA+AGG 0.570655 6:-4296758 MsG0680030508.01.T01:CDS
AATTTGCACTAACAAGTGGT+TGG 0.572723 6:-4295865 MsG0680030508.01.T01:CDS
TTATGAGTCTTGTATATAGA+CGG 0.576477 6:+4295482 None:intergenic
GAAGGTGAAAATCAACCCTA+AGG 0.579493 6:-4296740 MsG0680030508.01.T01:CDS
CAAACCTTCACACAAGGTGA+TGG 0.582575 6:+4296766 None:intergenic
CATGCAAGTATCCTTCAAGA+AGG 0.583757 6:-4297505 MsG0680030508.01.T01:CDS
TGATTGTATTGGGTAAATGC+GGG 0.584281 6:-4291975 MsG0680030508.01.T01:CDS
GTGATTGTATTGGGTAAATG+CGG 0.585829 6:-4291976 MsG0680030508.01.T01:CDS
TTGGAAGCCTTAGAGTGACT+GGG 0.587860 6:+4297052 None:intergenic
AAGGATTGTTACTTCAAAGA+GGG 0.588782 6:-4295117 MsG0680030508.01.T01:CDS
CCTTTAAGAGAAACTTGTGA+TGG 0.589265 6:-4296844 MsG0680030508.01.T01:CDS
GAAGGATTGTTACTTCAAAG+AGG 0.590696 6:-4295118 MsG0680030508.01.T01:CDS
AACTACTGAAGAATGTGAAG+AGG 0.590699 6:-4291926 MsG0680030508.01.T01:CDS
TTGTTGATCAAGATAGAACA+TGG 0.602629 6:-4295919 MsG0680030508.01.T01:CDS
TTGGAAGCCTTAGAGTAACT+GGG 0.604374 6:+4292145 None:intergenic
GAAACTATAGAAGACGGTGA+AGG 0.608984 6:+4291832 None:intergenic
TGTCTTCTCACAAAACCTAA+GGG 0.611258 6:+4292186 None:intergenic
TTCTTAGAAACTATAGAAGA+CGG 0.616090 6:+4291826 None:intergenic
TTCTTACAAACCTTCACACA+AGG 0.621821 6:+4296760 None:intergenic
TTTGCGAGGAGGCATTGGCA+AGG 0.624036 6:-4297084 MsG0680030508.01.T01:CDS
GGGTTGGCTAGAATTTGTGA+AGG 0.624634 6:-4295136 MsG0680030508.01.T01:CDS
GAACTTGAACATCAGAACAA+TGG 0.632266 6:-4297550 MsG0680030508.01.T01:CDS
TTTGTGAGAAGACATTGGCA+AGG 0.633520 6:-4292177 MsG0680030508.01.T01:CDS
AAGGATCCTTCATTATCACC+TGG 0.639424 6:-4296805 MsG0680030508.01.T01:CDS
TACCTCGCGATGATGAAGGA+TGG 0.645097 6:+4291869 None:intergenic
GACCATCCTTCATCATCGCG+AGG 0.661933 6:-4291871 MsG0680030508.01.T01:CDS
GTGATTGTACTCGGTAAATG+CGG 0.696593 6:-4296883 MsG0680030508.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATGAATTTATGAATT+AGG - Chr6:4291889-4291908 MsG0680030508.01.T01:CDS 10.0%
!! AATAAATTACCATTAAAATT+AGG + Chr6:4293573-4293592 None:intergenic 10.0%
!! AGATTGTTAAAAAAAATAAA+AGG + Chr6:4296669-4296688 None:intergenic 10.0%
!! ATAAATTACCATTAAAATTA+GGG + Chr6:4293572-4293591 None:intergenic 10.0%
!! CTATTTAAAAAATGAAAATT+TGG - Chr6:4296834-4296853 MsG0680030508.01.T01:CDS 10.0%
!! TAAATATGAATTTAAGAATT+AGG - Chr6:4291847-4291866 MsG0680030508.01.T01:CDS 10.0%
!! TAAATTATATTGATAAGAAA+AGG + Chr6:4294116-4294135 None:intergenic 10.0%
!!! AATTTTCATTTTTTAAATAG+GGG + Chr6:4296834-4296853 None:intergenic 10.0%
!!! ATTTTTTTGTCTTATTTTTT+AGG - Chr6:4292697-4292716 MsG0680030508.01.T01:intron 10.0%
!!! CAAATTTTCATTTTTTAAAT+AGG + Chr6:4296836-4296855 None:intergenic 10.0%
!!! TTTTTTTGTCTTATTTTTTA+GGG - Chr6:4292698-4292717 MsG0680030508.01.T01:intron 10.0%
!! AAAAATCATAAAATCAACAA+TGG + Chr6:4293774-4293793 None:intergenic 15.0%
!! AATTTATGAATTTGATTCAT+AGG + Chr6:4294419-4294438 None:intergenic 15.0%
!! TAAAATCAATAATTCAAAAC+AGG - Chr6:4293283-4293302 MsG0680030508.01.T01:intron 15.0%
!! TAAGTAAAATCATATATGTT+CGG - Chr6:4293839-4293858 MsG0680030508.01.T01:intron 15.0%
!! TAATATAATCATGTCATATA+TGG - Chr6:4294741-4294760 MsG0680030508.01.T01:intron 15.0%
!! TTATTAAATTACCTAGATTA+TGG - Chr6:4293179-4293198 MsG0680030508.01.T01:intron 15.0%
!!! AAACTAATAATACATAGTTT+TGG - Chr6:4296520-4296539 MsG0680030508.01.T01:CDS 15.0%
!!! ATGTATTATTAGTTTTTTAG+TGG + Chr6:4296515-4296534 None:intergenic 15.0%
!!! ATTTCATAATTTTAAAGATG+TGG - Chr6:4297551-4297570 MsG0680030508.01.T01:CDS 15.0%
!!! TGCAAAATTTCATAATTTTA+AGG - Chr6:4292614-4292633 MsG0680030508.01.T01:intron 15.0%
!!! TTAGGAGTATAATAAAATAA+CGG - Chr6:4291865-4291884 MsG0680030508.01.T01:CDS 15.0%
!!! TTTTTTGTCTTATTTTTTAG+GGG - Chr6:4292699-4292718 MsG0680030508.01.T01:intron 15.0%
!! AATTTCCTAATGTAGTTTAT+TGG + Chr6:4294032-4294051 None:intergenic 20.0%
!! AGATATGAATTGCAAAATTA+GGG - Chr6:4296689-4296708 MsG0680030508.01.T01:CDS 20.0%
!! ATTTGCAGATTATTTATCTT+TGG - Chr6:4297239-4297258 MsG0680030508.01.T01:intron 20.0%
!! CTTATTAAAAAAAATGGCAA+AGG + Chr6:4296918-4296937 None:intergenic 20.0%
!! TAGATATGAATTGCAAAATT+AGG - Chr6:4296688-4296707 MsG0680030508.01.T01:CDS 20.0%
!! TCATTGGTAAAATATAGTTT+AGG - Chr6:4296719-4296738 MsG0680030508.01.T01:CDS 20.0%
!! TTCATTATCTATTCTTTCAT+GGG - Chr6:4293080-4293099 MsG0680030508.01.T01:intron 20.0%
!! TTGGTCCTTATTAAAAAAAA+TGG + Chr6:4296924-4296943 None:intergenic 20.0%
!! TTTAATTACTATGCAATTAG+AGG - Chr6:4294353-4294372 MsG0680030508.01.T01:intron 20.0%
!! TTTCATTATCTATTCTTTCA+TGG - Chr6:4293079-4293098 MsG0680030508.01.T01:intron 20.0%
!! TTTGCAGATTATTTATCTTT+GGG - Chr6:4297240-4297259 MsG0680030508.01.T01:intron 20.0%
!!! AATTTTAAGGATATGAACAA+TGG - Chr6:4292627-4292646 MsG0680030508.01.T01:intron 20.0%
!!! ACTACAAATTTAGTTTAAAG+TGG - Chr6:4296254-4296273 MsG0680030508.01.T01:intron 20.0%
!!! AGGAAATTCATTTTAGAAAA+TGG - Chr6:4294044-4294063 MsG0680030508.01.T01:intron 20.0%
!!! ATTCACGTCTATATTTTTAA+GGG + Chr6:4293035-4293054 None:intergenic 20.0%
!!! CATGAATAATTTTGAAAAAG+TGG + Chr6:4291767-4291786 None:intergenic 20.0%
!!! CTTTGCCATTTTTTTTAATA+AGG - Chr6:4296916-4296935 MsG0680030508.01.T01:CDS 20.0%
!!! GAATGAGTATAGTTTTTATT+TGG - Chr6:4296759-4296778 MsG0680030508.01.T01:CDS 20.0%
!!! TATATTTTTGTTAAATGTGC+TGG - Chr6:4295764-4295783 MsG0680030508.01.T01:intron 20.0%
!!! TATTCACGTCTATATTTTTA+AGG + Chr6:4293036-4293055 None:intergenic 20.0%
!!! TGAAAATTCCCTAATTTTAA+TGG - Chr6:4293561-4293580 MsG0680030508.01.T01:intron 20.0%
!!! TTTTTAAAAGTTTCACATGA+AGG - Chr6:4293952-4293971 MsG0680030508.01.T01:intron 20.0%
! AAACTTATAAACACATTGTC+AGG + Chr6:4295835-4295854 None:intergenic 25.0%
! AAATTAGGGCTATAAATCAT+TGG - Chr6:4296703-4296722 MsG0680030508.01.T01:CDS 25.0%
! AATATAACAAAGTCCCATTA+TGG + Chr6:4293148-4293167 None:intergenic 25.0%
! AATTATATTCCAAAATCGCA+AGG + Chr6:4294081-4294100 None:intergenic 25.0%
! ACTTTCATTTGTGTCATATT+TGG + Chr6:4292258-4292277 None:intergenic 25.0%
! AGTAATAGATTAACCCTAAA+GGG - Chr6:4292909-4292928 MsG0680030508.01.T01:intron 25.0%
! AGTTATGTATAGCATACTAA+TGG - Chr6:4293229-4293248 MsG0680030508.01.T01:intron 25.0%
! ATATATAGAGAGAGGAATAT+AGG + Chr6:4296385-4296404 None:intergenic 25.0%
! ATGTTTCGTCTATATTCTTT+AGG + Chr6:4292961-4292980 None:intergenic 25.0%
! ATTAAAAAAAATGGCAAAGG+TGG + Chr6:4296915-4296934 None:intergenic 25.0%
! CAACTATAATTCATGTTGTT+TGG + Chr6:4294320-4294339 None:intergenic 25.0%
! CAATCGAATTATACCATAAT+GGG - Chr6:4293132-4293151 MsG0680030508.01.T01:intron 25.0%
! CTCTTTAATGTGATTGTATT+GGG - Chr6:4297303-4297322 MsG0680030508.01.T01:intron 25.0%
! GATATTACAATTTCAAGAAG+AGG - Chr6:4294240-4294259 MsG0680030508.01.T01:intron 25.0%
! GGAATATAGGAAGAATAATT+TGG + Chr6:4296372-4296391 None:intergenic 25.0%
! TAATAGTCATGATGATATCA+AGG - Chr6:4292753-4292772 MsG0680030508.01.T01:intron 25.0%
! TAGTAATAGATTAACCCTAA+AGG - Chr6:4292908-4292927 MsG0680030508.01.T01:intron 25.0%
! TCAATCGAATTATACCATAA+TGG - Chr6:4293131-4293150 MsG0680030508.01.T01:intron 25.0%
! TCTCTTTAATGTGATTGTAT+TGG - Chr6:4297302-4297321 MsG0680030508.01.T01:intron 25.0%
! TGTTTATTTAGAAACGTTAC+AGG - Chr6:4296423-4296442 MsG0680030508.01.T01:intron 25.0%
! TTCTATCTTGATCAACAAAA+AGG + Chr6:4293367-4293386 None:intergenic 25.0%
! TTCTTAGAAACTATAGAAGA+CGG + Chr6:4297465-4297484 None:intergenic 25.0%
! TTGTTCAATAGACGAATTAA+TGG + Chr6:4296344-4296363 None:intergenic 25.0%
!! AAGAAATTGATGGTCAATTA+TGG + Chr6:4296457-4296476 None:intergenic 25.0%
!! AGAAATTGATGGTCAATTAT+GGG + Chr6:4296456-4296475 None:intergenic 25.0%
!! CAAAACTTTTGTACTCAATT+AGG - Chr6:4293740-4293759 MsG0680030508.01.T01:intron 25.0%
!! CTATATATATTGACGGTTTT+AGG - Chr6:4296397-4296416 MsG0680030508.01.T01:intron 25.0%
!! GCTCACAATAATTTGAAATT+TGG - Chr6:4293458-4293477 MsG0680030508.01.T01:intron 25.0%
!! TAAAGGGACCAAAAATTTTA+GGG - Chr6:4292925-4292944 MsG0680030508.01.T01:intron 25.0%
!! TAGATTCTTTTTGTTCCTTA+GGG + Chr6:4292566-4292585 None:intergenic 25.0%
!! TATGAAATTTTGCATGAGAT+TGG + Chr6:4292608-4292627 None:intergenic 25.0%
!! TTAGATTCTTTTTGTTCCTT+AGG + Chr6:4292567-4292586 None:intergenic 25.0%
!! TTATGAGTCTTGTATATAGA+CGG + Chr6:4293809-4293828 None:intergenic 25.0%
!!! AATTTTAAAGATGTGGACAA+TGG - Chr6:4297558-4297577 MsG0680030508.01.T01:CDS 25.0%
!!! ATCACTGTTGAATTTTTTAG+GGG - Chr6:4292992-4293011 MsG0680030508.01.T01:intron 25.0%
!!! CGCAACATTTTAAAACTTAT+GGG + Chr6:4296803-4296822 None:intergenic 25.0%
!!! GAAGAATGATTTTGAAAAAG+TGG + Chr6:4296605-4296624 None:intergenic 25.0%
!!! GATCACTGTTGAATTTTTTA+GGG - Chr6:4292991-4293010 MsG0680030508.01.T01:intron 25.0%
!!! GTCTATATTCTTTAGGTTTT+TGG + Chr6:4292954-4292973 None:intergenic 25.0%
!!! GTTTTAAAATGTTGCGATTT+TGG - Chr6:4296807-4296826 MsG0680030508.01.T01:CDS 25.0%
!!! TAAAATTTTTGGTCCCTTTA+GGG + Chr6:4292925-4292944 None:intergenic 25.0%
!!! TAATACATAGTTTTGGTTAG+TGG - Chr6:4296527-4296546 MsG0680030508.01.T01:CDS 25.0%
!!! TAGTTTTTTAGTGGAAAGAA+GGG + Chr6:4296506-4296525 None:intergenic 25.0%
!!! TCGCAACATTTTAAAACTTA+TGG + Chr6:4296804-4296823 None:intergenic 25.0%
!!! TCTTTTTGAAAATGCACATA+AGG - Chr6:4296055-4296074 MsG0680030508.01.T01:intron 25.0%
!!! TGATCACTGTTGAATTTTTT+AGG - Chr6:4292990-4293009 MsG0680030508.01.T01:intron 25.0%
!!! TTAGTTTTTTAGTGGAAAGA+AGG + Chr6:4296507-4296526 None:intergenic 25.0%
AAACAATTTGCACTAACAAG+TGG - Chr6:4293419-4293438 MsG0680030508.01.T01:intron 30.0%
AAACCAAACATCATAATCAC+TGG + Chr6:4292295-4292314 None:intergenic 30.0%
AAACCAGTGATTATGATGTT+TGG - Chr6:4292289-4292308 MsG0680030508.01.T01:intron 30.0%
AAGTAACTTTGTTGCACTTT+CGG - Chr6:4296114-4296133 MsG0680030508.01.T01:intron 30.0%
AATCATGTCATATATGGACT+TGG - Chr6:4294747-4294766 MsG0680030508.01.T01:intron 30.0%
AATTGACAAGTACAATGTGA+TGG + Chr6:4294448-4294467 None:intergenic 30.0%
ACGTTTACACAAGAAATTGA+TGG + Chr6:4296467-4296486 None:intergenic 30.0%
ATACTCATTCATCACATTCA+AGG + Chr6:4296749-4296768 None:intergenic 30.0%
CAAAACACACAAAAGACATA+TGG + Chr6:4291950-4291969 None:intergenic 30.0%
CATCACAAGTTTCTCTTAAA+GGG + Chr6:4292446-4292465 None:intergenic 30.0%
CCAATCAAAATCCATAATCT+AGG + Chr6:4293193-4293212 None:intergenic 30.0%
CCTCTCTCTATATATATTGA+CGG - Chr6:4296390-4296409 MsG0680030508.01.T01:intron 30.0%
CTGACAATGTGTTTATAAGT+GGG - Chr6:4295680-4295699 MsG0680030508.01.T01:intron 30.0%
CTTCAGTAGTTTCTTTCAAA+GGG + Chr6:4297353-4297372 None:intergenic 30.0%
CTTCTCAAGAATTTGATCAT+CGG - Chr6:4296568-4296587 MsG0680030508.01.T01:intron 30.0%
GACACAAATGAAAGTTACTT+GGG - Chr6:4292263-4292282 MsG0680030508.01.T01:intron 30.0%
GTCTACCAATAAACTACATT+AGG - Chr6:4294024-4294043 MsG0680030508.01.T01:intron 30.0%
GTGACAATGTGTTTATAAGT+GGG - Chr6:4296012-4296031 MsG0680030508.01.T01:intron 30.0%
TAAAAAACCCAGTTACTCTA+AGG - Chr6:4297136-4297155 MsG0680030508.01.T01:intron 30.0%
TCAATAGACGAATTAATGGT+TGG + Chr6:4296340-4296359 None:intergenic 30.0%
TCGATAAAAAGATGCTTGAT+AGG + Chr6:4293884-4293903 None:intergenic 30.0%
TCTCTTATAAACACATTGTC+AGG + Chr6:4295970-4295989 None:intergenic 30.0%
TCTTCAGTAGTTTCTTTCAA+AGG + Chr6:4297354-4297373 None:intergenic 30.0%
TGACAATGTGTTTATAAGTG+GGG - Chr6:4294807-4294826 MsG0680030508.01.T01:intron 30.0%
TGACACAAATGAAAGTTACT+TGG - Chr6:4292262-4292281 MsG0680030508.01.T01:intron 30.0%
TGTGTCTTCACAAATTCATT+TGG + Chr6:4293314-4293333 None:intergenic 30.0%
TGTTTATAAGTTTCCGCTAT+CGG - Chr6:4295842-4295861 MsG0680030508.01.T01:CDS 30.0%
TTAAGGATATGAACAATGGT+TGG - Chr6:4292631-4292650 MsG0680030508.01.T01:intron 30.0%
TTGCTCAAAACTTATGTGTA+AGG + Chr6:4296295-4296314 None:intergenic 30.0%
TTGTTGATCAAGATAGAACA+TGG - Chr6:4293369-4293388 MsG0680030508.01.T01:intron 30.0%
! AAAGGGACCAAAAATTTTAG+GGG - Chr6:4292926-4292945 MsG0680030508.01.T01:intron 30.0%
! AACTTTTGTACTCAATTAGG+TGG - Chr6:4293743-4293762 MsG0680030508.01.T01:intron 30.0%
! AAGGATTGTTACTTCAAAGA+GGG - Chr6:4294171-4294190 MsG0680030508.01.T01:intron 30.0%
! CTAAAGGGACCAAAAATTTT+AGG - Chr6:4292924-4292943 MsG0680030508.01.T01:intron 30.0%
! GTTTCAAAATGTTGCGATTT+TGG + Chr6:4296943-4296962 None:intergenic 30.0%
! TGGTTCTTTGAAAGTTACTA+AGG - Chr6:4292464-4292483 MsG0680030508.01.T01:intron 30.0%
! TTTTGCAGAAAATTGAGAAC+TGG + Chr6:4292046-4292065 None:intergenic 30.0%
!! CCTAGATTATGGATTTTGAT+TGG - Chr6:4293190-4293209 MsG0680030508.01.T01:intron 30.0%
!! GCTTTTTGAAAATGCACATA+AGG - Chr6:4295723-4295742 MsG0680030508.01.T01:intron 30.0%
!!! CGCAACATTTTGAAACTTAA+GGG - Chr6:4296947-4296966 MsG0680030508.01.T01:CDS 30.0%
!!! CTAAAATTTTTGGTCCCTTT+AGG + Chr6:4292926-4292945 None:intergenic 30.0%
!!! TATGATGTTTGGTTTTGCAA+TGG - Chr6:4292300-4292319 MsG0680030508.01.T01:intron 30.0%
!!! TCACTGTTGAATTTTTTAGG+GGG - Chr6:4292993-4293012 MsG0680030508.01.T01:intron 30.0%
!!! TCGCAACATTTTGAAACTTA+AGG - Chr6:4296946-4296965 MsG0680030508.01.T01:CDS 30.0%
!!! TTAGCAATTTTGGGACAAAA+GGG + Chr6:4296861-4296880 None:intergenic 30.0%
AACTACTGAAGAATGTGAAG+AGG - Chr6:4297362-4297381 MsG0680030508.01.T01:intron 35.0%
AATTTGCACTAACAAGTGGT+TGG - Chr6:4293423-4293442 MsG0680030508.01.T01:intron 35.0%
ACAATGTGTTTATAAGTGGG+GGG - Chr6:4295683-4295702 MsG0680030508.01.T01:intron 35.0%
AGTAACTTTGTTGCACTTTC+GGG - Chr6:4296115-4296134 MsG0680030508.01.T01:intron 35.0%
ATGCAAAAAAGTCCTTGTCA+TGG + Chr6:4292822-4292841 None:intergenic 35.0%
ATGTCTTCTCACAAAACCTA+AGG + Chr6:4297106-4297125 None:intergenic 35.0%
ATTTAGAAACGTTACAGGCA+TGG - Chr6:4296428-4296447 MsG0680030508.01.T01:intron 35.0%
ATTTATGTGTGAACTCTCTC+AGG - Chr6:4294131-4294150 MsG0680030508.01.T01:intron 35.0%
CATATGCACATGATGAAAGA+AGG - Chr6:4293332-4293351 MsG0680030508.01.T01:intron 35.0%
CCACTTATAAACACATTGTC+AGG + Chr6:4295682-4295701 None:intergenic 35.0%
CCATCACAAGTTTCTCTTAA+AGG + Chr6:4292447-4292466 None:intergenic 35.0%
CCGTCAATATATATAGAGAG+AGG + Chr6:4296393-4296412 None:intergenic 35.0%
CCTGACAATGTGTTTATAAG+TGG - Chr6:4295679-4295698 MsG0680030508.01.T01:intron 35.0%
CGTGACAATGTGTTTATAAG+TGG - Chr6:4296011-4296030 MsG0680030508.01.T01:intron 35.0%
CTCTTTGATGTGATTGTACT+CGG - Chr6:4292396-4292415 MsG0680030508.01.T01:intron 35.0%
CTTCATTATCACCTGGTAAA+AGG - Chr6:4292490-4292509 MsG0680030508.01.T01:intron 35.0%
GAACTTGAACATCAGAACAA+TGG - Chr6:4291738-4291757 MsG0680030508.01.T01:CDS 35.0%
GAATTTGATCATCGGAGTAT+TGG - Chr6:4296576-4296595 MsG0680030508.01.T01:intron 35.0%
GACAATGTGTTTATAAGTGG+GGG - Chr6:4295682-4295701 MsG0680030508.01.T01:intron 35.0%
GACCGAAAAGAAAGTTACTT+GGG - Chr6:4297170-4297189 MsG0680030508.01.T01:intron 35.0%
GCACTTTCGGTTACAATATT+AGG - Chr6:4296230-4296249 MsG0680030508.01.T01:intron 35.0%
GTGATTGTATTGGGTAAATG+CGG - Chr6:4297312-4297331 MsG0680030508.01.T01:intron 35.0%
GTTTATAAGTTTCCGCTATC+GGG - Chr6:4295843-4295862 MsG0680030508.01.T01:CDS 35.0%
TATCCTTCAAGAAGGAAAAC+TGG - Chr6:4291791-4291810 MsG0680030508.01.T01:CDS 35.0%
TATGAAATCTTGCATGTGCT+TGG + Chr6:4297539-4297558 None:intergenic 35.0%
TATTGTTAAGAGTCCCACAT+CGG - Chr6:4294771-4294790 MsG0680030508.01.T01:intron 35.0%
TCATGATTGCAGACACAAAT+TGG + Chr6:4294580-4294599 None:intergenic 35.0%
TCTAATCGACCATCTTCAAT+AGG + Chr6:4294206-4294225 None:intergenic 35.0%
TCTGCAATCATGAAAGAGAA+TGG - Chr6:4294587-4294606 MsG0680030508.01.T01:intron 35.0%
TGATACTTGCCTATTGAAGA+TGG - Chr6:4294194-4294213 MsG0680030508.01.T01:intron 35.0%
TGATTGTATTGGGTAAATGC+GGG - Chr6:4297313-4297332 MsG0680030508.01.T01:intron 35.0%
TGTCTTCTCACAAAACCTAA+GGG + Chr6:4297105-4297124 None:intergenic 35.0%
TGTTTATAAGAGACCCACAT+CGG - Chr6:4295977-4295996 MsG0680030508.01.T01:CDS 35.0%
TTCTTACAAACCTTCACACA+AGG + Chr6:4292531-4292550 None:intergenic 35.0%
TTGTGTGAAGGTTTGTAAGA+AGG - Chr6:4292530-4292549 MsG0680030508.01.T01:intron 35.0%
TTTATGTGTGAACTCTCTCA+GGG - Chr6:4294132-4294151 MsG0680030508.01.T01:intron 35.0%
! AAATTGTGACCTTGCGATTT+TGG - Chr6:4294069-4294088 MsG0680030508.01.T01:intron 35.0%
! AAGGGACCAAAAATTTTAGG+GGG - Chr6:4292927-4292946 MsG0680030508.01.T01:intron 35.0%
! ACACATTGAGAGAGATCTTT+TGG - Chr6:4292858-4292877 MsG0680030508.01.T01:intron 35.0%
! ACTTTCTTTTCGGTCGTATT+TGG + Chr6:4297165-4297184 None:intergenic 35.0%
! CCTTTAAGAGAAACTTGTGA+TGG - Chr6:4292444-4292463 MsG0680030508.01.T01:intron 35.0%
! CTCCCAAGTAACTTTCTTTT+CGG + Chr6:4297175-4297194 None:intergenic 35.0%
! GAAGGATTGTTACTTCAAAG+AGG - Chr6:4294170-4294189 MsG0680030508.01.T01:intron 35.0%
! GACGTCTTCTTAGCAATTTT+GGG + Chr6:4296870-4296889 None:intergenic 35.0%
! TAGAACATGGAATGCTGATT+TGG - Chr6:4293382-4293401 MsG0680030508.01.T01:intron 35.0%
! TGACGTCTTCTTAGCAATTT+TGG + Chr6:4296871-4296890 None:intergenic 35.0%
! TTACCAGTTTTCCTTCTTGA+AGG + Chr6:4291797-4291816 None:intergenic 35.0%
! TTTGCGTGATTCACAACTTT+TGG - Chr6:4292350-4292369 MsG0680030508.01.T01:intron 35.0%
! TTTGGTCCCCCTAAAATTTT+TGG + Chr6:4292936-4292955 None:intergenic 35.0%
!! CTTTTACCAGGTGATAATGA+AGG + Chr6:4292492-4292511 None:intergenic 35.0%
!! TAGGTTTTGTGAGAAGACAT+TGG - Chr6:4297106-4297125 MsG0680030508.01.T01:intron 35.0%
!!! ATGTTTGGTTTTGCAATGGT+TGG - Chr6:4292304-4292323 MsG0680030508.01.T01:intron 35.0%
!!! CTTAGCAATTTTGGGACAAA+AGG + Chr6:4296862-4296881 None:intergenic 35.0%
!!! TAGCAATTTTGGGACAAAAG+GGG + Chr6:4296860-4296879 None:intergenic 35.0%
!!! TGCTATTTTCTCTCTTGAAG+AGG - Chr6:4293535-4293554 MsG0680030508.01.T01:intron 35.0%
AAGGATCCTTCATTATCACC+TGG - Chr6:4292483-4292502 MsG0680030508.01.T01:intron 40.0%
CATGCAAGTATCCTTCAAGA+AGG - Chr6:4291783-4291802 MsG0680030508.01.T01:CDS 40.0%
CGAAAAATTCAGCCATGACA+AGG - Chr6:4292807-4292826 MsG0680030508.01.T01:intron 40.0%
CGACCGAAAAGAAAGTTACT+TGG - Chr6:4297169-4297188 MsG0680030508.01.T01:intron 40.0%
CTCATTCATCACATTCAAGG+AGG + Chr6:4296746-4296765 None:intergenic 40.0%
CTTCAAAGTAGCCTTCAAGA+AGG - Chr6:4296621-4296640 MsG0680030508.01.T01:intron 40.0%
GAAACTATAGAAGACGGTGA+AGG + Chr6:4297459-4297478 None:intergenic 40.0%
GAAGGTGAAAATCAACCCTA+AGG - Chr6:4292548-4292567 MsG0680030508.01.T01:intron 40.0%
GACTTGCGTGAATTTGCAAA+AGG + Chr6:4294638-4294657 None:intergenic 40.0%
GGTTTGTGGACATAAATGGT+GGG + Chr6:4294959-4294978 None:intergenic 40.0%
GTAACTTTGTTGCACTTTCG+GGG - Chr6:4296116-4296135 MsG0680030508.01.T01:intron 40.0%
GTCACGTGTCCCAAAAAAAA+GGG - Chr6:4296887-4296906 MsG0680030508.01.T01:CDS 40.0%
GTGATTGTACTCGGTAAATG+CGG - Chr6:4292405-4292424 MsG0680030508.01.T01:intron 40.0%
TAACAAACCCAGTCACTCTA+AGG - Chr6:4292229-4292248 MsG0680030508.01.T01:intron 40.0%
TAACTTTGTTGCACTTTCGG+GGG - Chr6:4296117-4296136 MsG0680030508.01.T01:intron 40.0%
TAGCCTTCAAGAAGGAAAAC+TGG - Chr6:4296629-4296648 MsG0680030508.01.T01:intron 40.0%
TCACGTGTCCCAAAAAAAAG+GGG - Chr6:4296888-4296907 MsG0680030508.01.T01:CDS 40.0%
TGCTATCAGGTTTCTGCTAT+CGG - Chr6:4294929-4294948 MsG0680030508.01.T01:intron 40.0%
TTGGAAGCCTTAGAGTAACT+GGG + Chr6:4297146-4297165 None:intergenic 40.0%
TTTGGAAGCCTTAGAGTAAC+TGG + Chr6:4297147-4297166 None:intergenic 40.0%
TTTGTGAGAAGACATTGGCA+AGG - Chr6:4297111-4297130 MsG0680030508.01.T01:intron 40.0%
! AAGTGCCAATAAGTTTTGCG+AGG - Chr6:4292190-4292209 MsG0680030508.01.T01:CDS 40.0%
! ACTTGGTTCGTGGACATAAA+TGG + Chr6:4295876-4295895 None:intergenic 40.0%
! GCACATAAGGTTGACTTCAT+GGG - Chr6:4295736-4295755 MsG0680030508.01.T01:intron 40.0%
! TGCACATAAGGTTGACTTCA+TGG - Chr6:4295735-4295754 MsG0680030508.01.T01:intron 40.0%
! TGGTTTGTGGACATAAATGG+TGG + Chr6:4294960-4294979 None:intergenic 40.0%
!! GCTTGGTTTGTGGACATAAA+TGG + Chr6:4294963-4294982 None:intergenic 40.0%
!! GGAGATTTTAGCCTTTTACC+AGG + Chr6:4292504-4292523 None:intergenic 40.0%
!! GTATGACAGAAAGTACCCTT+AGG - Chr6:4297087-4297106 MsG0680030508.01.T01:CDS 40.0%
!!! GTTCGTGCTTAGCTTTTTTG+TGG - Chr6:4292721-4292740 MsG0680030508.01.T01:intron 40.0%
!!! TAGCTTTTTTGTGGTGTAGC+AGG - Chr6:4292730-4292749 MsG0680030508.01.T01:intron 40.0%
!!! TTGGTTTTGCAATGGTTGGA+AGG - Chr6:4292308-4292327 MsG0680030508.01.T01:intron 40.0%
AAGTCATCACCTATCCGATG+TGG + Chr6:4294788-4294807 None:intergenic 45.0%
ACGACATCACATATCCGATG+TGG + Chr6:4295994-4296013 None:intergenic 45.0%
AGGACATCACATATCCGATG+TGG + Chr6:4295662-4295681 None:intergenic 45.0%
AGTCATCACCTATCCGATGT+GGG + Chr6:4294787-4294806 None:intergenic 45.0%
ATCTCCATCACCTTGTGTGA+AGG - Chr6:4292518-4292537 MsG0680030508.01.T01:intron 45.0%
CAAAACCAGCTTGTGAGGTA+AGG + Chr6:4294838-4294857 None:intergenic 45.0%
CAAACCTTCACACAAGGTGA+TGG + Chr6:4292525-4292544 None:intergenic 45.0%
CACGTGTCCCAAAAAAAAGG+GGG - Chr6:4296889-4296908 MsG0680030508.01.T01:CDS 45.0%
CGACATCACATATCCGATGT+GGG + Chr6:4295993-4296012 None:intergenic 45.0%
CGTCACGTGTCCCAAAAAAA+AGG - Chr6:4296886-4296905 MsG0680030508.01.T01:CDS 45.0%
CTCTCTCAATGTGTGTCTTC+TGG + Chr6:4292852-4292871 None:intergenic 45.0%
GATAGCAGAAACCTGATAGC+AGG + Chr6:4294930-4294949 None:intergenic 45.0%
GCTATCAGGTTTCTGCTATC+GGG - Chr6:4294930-4294949 MsG0680030508.01.T01:intron 45.0%
GGACATCACATATCCGATGT+GGG + Chr6:4295661-4295680 None:intergenic 45.0%
GGTTCGTGGACATAAATGGT+GGG + Chr6:4295872-4295891 None:intergenic 45.0%
GTAATCCTTACCTCACAAGC+TGG - Chr6:4294830-4294849 MsG0680030508.01.T01:intron 45.0%
GTCGTACAAAGAGTCTAGAG+AGG + Chr6:4293680-4293699 None:intergenic 45.0%
GTGTGTTAAGAGACCCACAT+CGG - Chr6:4295241-4295260 MsG0680030508.01.T01:intron 45.0%
TGCCTCCTCGCAAAACTTAT+TGG + Chr6:4292198-4292217 None:intergenic 45.0%
TGCTATCAGGTTTCCGCTAT+CGG - Chr6:4295002-4295021 MsG0680030508.01.T01:intron 45.0%
TGGCTCAATGGATCTTTGAG+AGG + Chr6:4294907-4294926 None:intergenic 45.0%
TGGTTCGTGGACATAAATGG+TGG + Chr6:4295873-4295892 None:intergenic 45.0%
TTAAGAGTCCCACATCGGAT+AGG - Chr6:4294776-4294795 MsG0680030508.01.T01:intron 45.0%
TTGGAAGCCTTAGAGTGACT+GGG + Chr6:4292239-4292258 None:intergenic 45.0%
TTTGGAAGCCTTAGAGTGAC+TGG + Chr6:4292240-4292259 None:intergenic 45.0%
! GAAGACGGTGAAGGAGATTT+TGG + Chr6:4297450-4297469 None:intergenic 45.0%
! GTTAAATGTGCTGGTCGTGA+GGG - Chr6:4295773-4295792 MsG0680030508.01.T01:intron 45.0%
! TGCCAATAAGTTTTGCGAGG+AGG - Chr6:4292193-4292212 MsG0680030508.01.T01:CDS 45.0%
! TGTTAAATGTGCTGGTCGTG+AGG - Chr6:4295772-4295791 MsG0680030508.01.T01:intron 45.0%
! TTAAATGTGCTGGTCGTGAG+GGG - Chr6:4295774-4295793 MsG0680030508.01.T01:intron 45.0%
! TTGTGGACATAAATGGTGGG+TGG + Chr6:4294956-4294975 None:intergenic 45.0%
!! GGGTTGGCTAGAATTTGTGA+AGG - Chr6:4294152-4294171 MsG0680030508.01.T01:intron 45.0%
!! TAAGTTTTGCGAGGAGGCAT+TGG - Chr6:4292199-4292218 MsG0680030508.01.T01:intron 45.0%
!!! AAAGGTGGCCCCCTTTTTTT+TGG + Chr6:4296900-4296919 None:intergenic 45.0%
!!! AAGGTGGCCCCCTTTTTTTT+GGG + Chr6:4296899-4296918 None:intergenic 45.0%
!!! ACCTCACAAGCTGGTTTTGT+GGG - Chr6:4294839-4294858 MsG0680030508.01.T01:intron 45.0%
!!! TACCTCACAAGCTGGTTTTG+TGG - Chr6:4294838-4294857 MsG0680030508.01.T01:intron 45.0%
!!! TGGTTTTGTGGGGTTGTGTT+AGG - Chr6:4294850-4294869 MsG0680030508.01.T01:intron 45.0%
!! ATAAAAAAAAAAAAAAAACT+TGG + Chr6:4294692-4294711 None:intergenic 5.0%
!!! AAATTTTCATTTTTTAAATA+GGG + Chr6:4296835-4296854 None:intergenic 5.0%
ACGACCAGCACTATTGGACT+TGG + Chr6:4295893-4295912 None:intergenic 50.0%
AGCAGAAACCTGATAGCAGG+TGG + Chr6:4294927-4294946 None:intergenic 50.0%
CAAACCAAGCCCAATAGTGC+TGG - Chr6:4295046-4295065 MsG0680030508.01.T01:intron 50.0%
CGAACCAAGTCCAATAGTGC+TGG - Chr6:4295886-4295905 MsG0680030508.01.T01:CDS 50.0%
CTCTTACCTCGCGATGATGA+AGG + Chr6:4297426-4297445 None:intergenic 50.0%
CTTCATCATCGCGAGGTAAG+AGG - Chr6:4297424-4297443 MsG0680030508.01.T01:intron 50.0%
GCTATCAGGTTTCCGCTATC+GGG - Chr6:4295003-4295022 MsG0680030508.01.T01:intron 50.0%
GGTTCGTGGACATACGATGT+GGG + Chr6:4295180-4295199 None:intergenic 50.0%
TACCTCGCGATGATGAAGGA+TGG + Chr6:4297422-4297441 None:intergenic 50.0%
TGGTTCGTGGACATACGATG+TGG + Chr6:4295181-4295200 None:intergenic 50.0%
TGTGTGAACTCTCTCAGGGT+TGG - Chr6:4294136-4294155 MsG0680030508.01.T01:intron 50.0%
! GCACTATTGGACTTGGTTCG+TGG + Chr6:4295886-4295905 None:intergenic 50.0%
! GCACTATTGGGCTTGGTTTG+TGG + Chr6:4295046-4295065 None:intergenic 50.0%
! GGACTATTGGGCTTGGTTTG+TGG + Chr6:4294973-4294992 None:intergenic 50.0%
! TCGTGGACATAAATGGTGGG+TGG + Chr6:4295869-4295888 None:intergenic 50.0%
!! GATAGCGGAAACCTGATAGC+AGG + Chr6:4295003-4295022 None:intergenic 50.0%
!! TCCAATAGTGCTGGTCGTGA+GGG - Chr6:4295895-4295914 MsG0680030508.01.T01:CDS 50.0%
!!! CCTCACAAGCTGGTTTTGTG+GGG - Chr6:4294840-4294859 MsG0680030508.01.T01:intron 50.0%
AACCTGATAGCAGGTGGCTC+TGG + Chr6:4294921-4294940 None:intergenic 55.0%
ACGACCAGCACTATTGGGCT+TGG + Chr6:4295053-4295072 None:intergenic 55.0%
AGCGGAAACCTGATAGCAGG+TGG + Chr6:4295000-4295019 None:intergenic 55.0%
ATCCAGAGCCACCTGCTATC+AGG - Chr6:4295259-4295278 MsG0680030508.01.T01:intron 55.0%
CCATTGAGCCACCTGCTATC+AGG - Chr6:4294916-4294935 MsG0680030508.01.T01:intron 55.0%
CCCCACAAAACCAGCTTGTG+AGG + Chr6:4294843-4294862 None:intergenic 55.0%
CCCTCACGACCAGCACTATT+GGG + Chr6:4295058-4295077 None:intergenic 55.0%
CCTGATAGCAGGTGGCTCAA+TGG + Chr6:4294919-4294938 None:intergenic 55.0%
CGAACCAAGCCCAATAGTGC+TGG - Chr6:4295194-4295213 MsG0680030508.01.T01:intron 55.0%
GACCATCCTTCATCATCGCG+AGG - Chr6:4297417-4297436 MsG0680030508.01.T01:intron 55.0%
! GCACTATTGGGCTTGGTTCG+TGG + Chr6:4295194-4295213 None:intergenic 55.0%
!! AGCAGGTGGCTCTGGACTAT+TGG + Chr6:4294986-4295005 None:intergenic 55.0%
!! ATAGCAGGTGGCTCTGGATG+TGG + Chr6:4295258-4295277 None:intergenic 55.0%
!! CCAATAGTGCTGGTCGTGAG+GGG - Chr6:4295056-4295075 MsG0680030508.01.T01:intron 55.0%
!! CCCAATAGTGCTGGTCGTGA+GGG - Chr6:4295055-4295074 MsG0680030508.01.T01:intron 55.0%
!! GCAGGTGGCTCTGGACTATT+GGG + Chr6:4294985-4295004 None:intergenic 55.0%
!! GTCCAATAGTGCTGGTCGTG+AGG - Chr6:4295894-4295913 MsG0680030508.01.T01:CDS 55.0%
!! TAGCAGGTGGCTCTGGATGT+GGG + Chr6:4295257-4295276 None:intergenic 55.0%
!! TGGCTCTGGACTATTGGGCT+TGG + Chr6:4294980-4294999 None:intergenic 55.0%
!! TTTGCGAGGAGGCATTGGCA+AGG - Chr6:4292204-4292223 MsG0680030508.01.T01:intron 55.0%
CCCCTCACGACCAGCACTAT+TGG + Chr6:4295059-4295078 None:intergenic 60.0%
GTCCAGAGCCACCTGCTATC+AGG - Chr6:4294989-4295008 MsG0680030508.01.T01:intron 60.0%
!! AATGGTGGGTGGCCCGATAG+CGG + Chr6:4294945-4294964 None:intergenic 60.0%
!! ATAGTGCTGGTCGTGAGGGG+TGG - Chr6:4295059-4295078 MsG0680030508.01.T01:intron 60.0%
!! GCCCAATAGTGCTGGTCGTG+AGG - Chr6:4295054-4295073 MsG0680030508.01.T01:intron 60.0%
GTCGTGAGGGGTGGTCGTGA+GGG - Chr6:4295068-4295087 MsG0680030508.01.T01:intron 65.0%
TCGTGAGGGGTGGTCGTGAG+GGG - Chr6:4295069-4295088 MsG0680030508.01.T01:intron 65.0%
GGTCGTGAGGGGTGGTCGTG+AGG - Chr6:4295067-4295086 MsG0680030508.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 4291726 4297584 4291726 ID=MsG0680030508.01;Name=MsG0680030508.01
Chr6 mRNA 4291726 4297584 4291726 ID=MsG0680030508.01.T01;Parent=MsG0680030508.01;Name=MsG0680030508.01.T01;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.85|0.5|0.57|7|0|489
Chr6 exon 4297498 4297584 4297498 ID=MsG0680030508.01.T01:exon:8326;Parent=MsG0680030508.01.T01
Chr6 exon 4296662 4297121 4296662 ID=MsG0680030508.01.T01:exon:8325;Parent=MsG0680030508.01.T01
Chr6 exon 4296431 4296558 4296431 ID=MsG0680030508.01.T01:exon:8324;Parent=MsG0680030508.01.T01
Chr6 exon 4295831 4296005 4295831 ID=MsG0680030508.01.T01:exon:8323;Parent=MsG0680030508.01.T01
Chr6 exon 4295481 4295548 4295481 ID=MsG0680030508.01.T01:exon:8322;Parent=MsG0680030508.01.T01
Chr6 exon 4295095 4295157 4295095 ID=MsG0680030508.01.T01:exon:8321;Parent=MsG0680030508.01.T01
Chr6 exon 4291726 4292214 4291726 ID=MsG0680030508.01.T01:exon:8320;Parent=MsG0680030508.01.T01
Chr6 CDS 4297498 4297584 4297498 ID=MsG0680030508.01.T01:cds;Parent=MsG0680030508.01.T01
Chr6 CDS 4296662 4297121 4296662 ID=MsG0680030508.01.T01:cds;Parent=MsG0680030508.01.T01
Chr6 CDS 4296431 4296558 4296431 ID=MsG0680030508.01.T01:cds;Parent=MsG0680030508.01.T01
Chr6 CDS 4295831 4296005 4295831 ID=MsG0680030508.01.T01:cds;Parent=MsG0680030508.01.T01
Chr6 CDS 4295481 4295548 4295481 ID=MsG0680030508.01.T01:cds;Parent=MsG0680030508.01.T01
Chr6 CDS 4295095 4295157 4295095 ID=MsG0680030508.01.T01:cds;Parent=MsG0680030508.01.T01
Chr6 CDS 4291726 4292214 4291726 ID=MsG0680030508.01.T01:cds;Parent=MsG0680030508.01.T01
Gene Sequence

>MsG0680030508.01.T01

ATGTCTTCTCAAGAACTTGAACATCAGAACAATGGTGTCCACTTTTTCAAAATTATTCATGCAAGTATCCTTCAAGAAGGAAAACTGAAAGTGCCAATAAGTTTTGCGAGGAGGCATTGGCAAGGAATAACAAACCCAGTCACTCTAAGGCTTCCAAATATGACACAAATGAAAGTTACTTGGGAGAAAACCAGTGATTATGATGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCAAATTATTTGTCTTTGCGTGATTCACAACTTTTGGTGTTTCGATATCAAGAAAATTCTCTCTTTGATGTGATTGTACTCGGTAAATGCGGATTAGAAATAAAATACCCTTTAAGAGAAACTTGTGATGGTTCTTTGAAAGTTACTAAGGATCCTTCATTATCACCTGGTAAAAGGCTAAAATCTCCATCACCTTGTGTGAAGGTTTGTAAGAAGGTGAAAATCAACCCTAAGGAACAAAAAGAATCTAAGCATGAGAAGAAAATATTCCAATCTCATGCAAAATTTCATAATTTTAAGGATATGAACAATGGTAATAGTCATGATGATATCAAGGAGAGAAGCAAAGTTCTGTACGAGAAAGTGAACGAAAAATTCAGCCATGACAAGGACTTTTTTGCATGTTCGATCCAGAAGACACACATTGAGAGAGATCTTTTGGTGATACCAAATGAATTTGTGAAGACACATATGCACATGATGAAAGAAGGAAATGCTATCCTTTTTGTTGATCAAGATAGAACATGGAATGCTGATTTGGATCTCACTCTAAATAAACAATTTGCACTAACAAGTGGTTGGAGTGAATTCTGTGCTCACAATAATTTGAAATTTGGTGGTGTTTCCATTGTTGATTTTATGATTTTTTTTTTTGATGTTCCGTCTATATACAAGACTCATAAAGGTTGGCTAGAATTTGTGAAGGATTGTTACTTCAAAGAGGGTGATACTTGCCTATTGAAGATGAAAGTACCCTTAGGTTTTGTGAGAAGACATTGGCAAGGAATAAAAAACCCAGTTACTCTAAGGCTTCCAAATACGACCGAAAAGAAAGTTACTTGGGAGAAAACCAGTGATTATGATGTTTGGTTTTGCAATGGTTGGAAGGAATTTGCAGATTATTTATCTTTGGGCGATTCACAGCTTTTGATATTTCAATATCAAGAAAATTCTCTCTTTAATGTGATTGTATTGGGTAAATGCGGGTTAGAAATAAAATACCCTTTGAAAGAAACTACTGAAGAATGTGAAGAGGTTGAAAAGAGCGATAGTTCTTTAAAAATTGTTGACCATCCTTCATCATCGCGAGGTAAGAGGCCAAAATCTCCTTCACCGTCTTCTATAGTTTCTAAGAAGATGAAAAACAATCAAGAACAAAAAGAATCTAAGCATGAGAAGAGAAATGTCCAAGCACATGCAAGATTTCATAATTTTAAAGATGTGGACAATGGTTAG
Protein sequence

>MsG0680030508.01.T01

MSSQELEHQNNGVHFFKIIHASILQEGKLKVPISFARRHWQGITNPVTLRLPNMTQMKVTWEKTSDYDVWFCNGWKEFANYLSLRDSQLLVFRYQENSLFDVIVLGKCGLEIKYPLRETCDGSLKVTKDPSLSPGKRLKSPSPCVKVCKKVKINPKEQKESKHEKKIFQSHAKFHNFKDMNNGNSHDDIKERSKVLYEKVNEKFSHDKDFFACSIQKTHIERDLLVIPNEFVKTHMHMMKEGNAILFVDQDRTWNADLDLTLNKQFALTSGWSEFCAHNNLKFGGVSIVDFMIFFFDVPSIYKTHKGWLEFVKDCYFKEGDTCLLKMKVPLGFVRRHWQGIKNPVTLRLPNTTEKKVTWEKTSDYDVWFCNGWKEFADYLSLGDSQLLIFQYQENSLFNVIVLGKCGLEIKYPLKETTEECEEVEKSDSSLKIVDHPSSSRGKRPKSPSPSSIVSKKMKNNQEQKESKHEKRNVQAHARFHNFKDVDNG*