Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031174.01.T01 | XP_013451264.1 | 92.689 | 424 | 13 | 6 | 1 | 421 | 1 | 409 | 0 | 778 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031174.01.T01 | Q9FYG7 | 33.84 | 263 | 140 | 6 | 15 | 272 | 2 | 235 | 8.75E-32 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031174.01.T01 | G7ZY44 | 92.689 | 424 | 13 | 6 | 1 | 421 | 1 | 409 | 0.0 | 778 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0680031174.01.T01 | TF | TCP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031174.01.T01 | MTR_6g017055 | 92.689 | 424 | 13 | 6 | 1 | 421 | 1 | 409 | 0.0 | 778 |
| MsG0680031174.01.T01 | MTR_7g018500 | 42.889 | 443 | 149 | 25 | 1 | 415 | 1 | 367 | 1.38e-56 | 191 |
| MsG0680031174.01.T01 | MTR_1g103380 | 35.981 | 428 | 171 | 17 | 28 | 404 | 114 | 489 | 1.79e-37 | 142 |
| MsG0680031174.01.T01 | MTR_4g111935 | 34.892 | 278 | 142 | 9 | 5 | 270 | 17 | 267 | 1.00e-29 | 119 |
| MsG0680031174.01.T01 | MTR_4g079580 | 52.239 | 67 | 32 | 0 | 118 | 184 | 16 | 82 | 4.59e-17 | 82.4 |
| MsG0680031174.01.T01 | MTR_2g090960 | 50.746 | 67 | 33 | 0 | 118 | 184 | 18 | 84 | 1.57e-16 | 80.5 |
| MsG0680031174.01.T01 | MTR_6g015350 | 43.810 | 105 | 54 | 3 | 125 | 228 | 50 | 150 | 6.17e-16 | 79.0 |
| MsG0680031174.01.T01 | MTR_8g463380 | 50.000 | 66 | 33 | 0 | 118 | 183 | 48 | 113 | 1.49e-15 | 78.6 |
| MsG0680031174.01.T01 | MTR_2g078200 | 58.333 | 60 | 25 | 0 | 124 | 183 | 20 | 79 | 1.59e-15 | 77.0 |
| MsG0680031174.01.T01 | MTR_7g015010 | 53.448 | 58 | 27 | 0 | 125 | 182 | 58 | 115 | 5.50e-14 | 73.2 |
| MsG0680031174.01.T01 | MTR_3g026050 | 51.724 | 58 | 28 | 0 | 125 | 182 | 58 | 115 | 1.07e-12 | 69.7 |
| MsG0680031174.01.T01 | MTR_4g109660 | 48.276 | 58 | 30 | 0 | 125 | 182 | 57 | 114 | 5.44e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031174.01.T01 | AT1G67260 | 33.840 | 263 | 140 | 6 | 15 | 272 | 2 | 235 | 8.26e-33 | 127 |
| MsG0680031174.01.T01 | AT1G67260 | 33.840 | 263 | 140 | 6 | 15 | 272 | 2 | 235 | 8.26e-33 | 127 |
| MsG0680031174.01.T01 | AT1G67260 | 33.840 | 263 | 140 | 6 | 15 | 272 | 2 | 235 | 8.92e-33 | 127 |
| MsG0680031174.01.T01 | AT1G68800 | 69.863 | 73 | 19 | 1 | 124 | 196 | 112 | 181 | 3.51e-25 | 106 |
| MsG0680031174.01.T01 | AT1G68800 | 69.863 | 73 | 19 | 1 | 124 | 196 | 112 | 181 | 3.84e-25 | 105 |
| MsG0680031174.01.T01 | AT3G18550 | 39.103 | 156 | 85 | 4 | 120 | 267 | 144 | 297 | 1.69e-23 | 102 |
| MsG0680031174.01.T01 | AT3G18550 | 38.125 | 160 | 85 | 4 | 120 | 267 | 144 | 301 | 1.35e-22 | 99.8 |
| MsG0680031174.01.T01 | AT3G18550 | 38.125 | 160 | 85 | 4 | 120 | 267 | 144 | 301 | 1.58e-22 | 99.4 |
| MsG0680031174.01.T01 | AT3G18550 | 38.125 | 160 | 85 | 4 | 120 | 267 | 144 | 301 | 1.58e-22 | 99.4 |
| MsG0680031174.01.T01 | AT1G53230 | 53.731 | 67 | 31 | 0 | 118 | 184 | 43 | 109 | 1.52e-17 | 84.3 |
| MsG0680031174.01.T01 | AT1G53230 | 53.731 | 67 | 31 | 0 | 118 | 184 | 43 | 109 | 1.52e-17 | 84.3 |
| MsG0680031174.01.T01 | AT4G18390 | 33.125 | 160 | 69 | 4 | 118 | 268 | 36 | 166 | 3.79e-16 | 80.1 |
| MsG0680031174.01.T01 | AT4G18390 | 33.125 | 160 | 69 | 4 | 118 | 268 | 36 | 166 | 3.79e-16 | 80.1 |
| MsG0680031174.01.T01 | AT2G31070 | 52.308 | 65 | 31 | 0 | 118 | 182 | 23 | 87 | 4.85e-16 | 79.7 |
| MsG0680031174.01.T01 | AT1G30210 | 56.897 | 58 | 25 | 0 | 125 | 182 | 51 | 108 | 9.98e-16 | 78.2 |
| MsG0680031174.01.T01 | AT1G30210 | 56.897 | 58 | 25 | 0 | 125 | 182 | 51 | 108 | 9.98e-16 | 78.2 |
| MsG0680031174.01.T01 | AT3G15030 | 49.254 | 67 | 34 | 0 | 118 | 184 | 39 | 105 | 1.28e-15 | 79.0 |
| MsG0680031174.01.T01 | AT3G15030 | 49.254 | 67 | 34 | 0 | 118 | 184 | 39 | 105 | 1.28e-15 | 79.0 |
| MsG0680031174.01.T01 | AT3G15030 | 49.254 | 67 | 34 | 0 | 118 | 184 | 39 | 105 | 1.28e-15 | 79.0 |
| MsG0680031174.01.T01 | AT3G15030 | 49.254 | 67 | 34 | 0 | 118 | 184 | 39 | 105 | 1.28e-15 | 79.0 |
| MsG0680031174.01.T01 | AT3G02150 | 53.448 | 58 | 27 | 0 | 125 | 182 | 75 | 132 | 6.35e-14 | 72.0 |
| MsG0680031174.01.T01 | AT3G02150 | 53.448 | 58 | 27 | 0 | 125 | 182 | 75 | 132 | 9.89e-14 | 72.4 |
| MsG0680031174.01.T01 | AT5G60970 | 50.000 | 58 | 29 | 0 | 125 | 182 | 64 | 121 | 1.20e-12 | 69.3 |
| MsG0680031174.01.T01 | AT5G08070 | 48.276 | 58 | 30 | 0 | 125 | 182 | 34 | 91 | 1.70e-11 | 64.3 |
| MsG0680031174.01.T01 | AT5G08070 | 48.276 | 58 | 30 | 0 | 125 | 182 | 34 | 91 | 1.70e-11 | 64.3 |
Find 76 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAAATTGGTTAGGGTTTC+TGG | 0.034535 | 6:-15570743 | None:intergenic |
| TGCCAAATTCATCTCCAAAT+TGG | 0.181237 | 6:+15571626 | MsG0680031174.01.T01:CDS |
| TCCAGAAACCCTAACCAATT+TGG | 0.245374 | 6:+15570742 | MsG0680031174.01.T01:CDS |
| TCCCAATTTGGAGATGAATT+TGG | 0.249636 | 6:-15571628 | None:intergenic |
| AGAATTATTGGTAGCAATTT+CGG | 0.262708 | 6:-15571158 | None:intergenic |
| AAAATCTAAGAAAGCAATTA+AGG | 0.291671 | 6:+15571048 | MsG0680031174.01.T01:CDS |
| ATAACATTAAAATCATTTCT+TGG | 0.292170 | 6:-15571451 | None:intergenic |
| GGTATGTAAGGAATTGAAAA+TGG | 0.297859 | 6:-15570674 | None:intergenic |
| CTTGGTGGTTCTTCTCACTA+TGG | 0.323316 | 6:+15570845 | MsG0680031174.01.T01:CDS |
| AATTGGGATGCTAGTAATAA+TGG | 0.323689 | 6:+15571643 | MsG0680031174.01.T01:CDS |
| TTATTACTAGCATCCCAATT+TGG | 0.332918 | 6:-15571640 | None:intergenic |
| TTCGATCTTCAAGACATGTT+AGG | 0.334610 | 6:+15570986 | MsG0680031174.01.T01:CDS |
| AAACTTGTTGATGATTCCTT+AGG | 0.334977 | 6:-15571577 | None:intergenic |
| TTCTTGAGAAGCAGCCAAAT+TGG | 0.337770 | 6:-15570756 | None:intergenic |
| TTTGTTATGTTATGATGATT+AGG | 0.344826 | 6:-15570716 | None:intergenic |
| CGGTTTCTTTGTGAGGAAAC+AGG | 0.347458 | 6:-15570873 | None:intergenic |
| AAGAATCAATTGTGATTAAG+AGG | 0.356771 | 6:+15571476 | MsG0680031174.01.T01:CDS |
| GCCAAATTCATCTCCAAATT+GGG | 0.359624 | 6:+15571627 | MsG0680031174.01.T01:CDS |
| GAGAAGCAGCCAAATTGGTT+AGG | 0.362326 | 6:-15570751 | None:intergenic |
| CTGTGTCGGTCTTTCTTCAC+CGG | 0.395195 | 6:-15570893 | None:intergenic |
| GAAGATGAAGGAAGAAATGA+AGG | 0.397807 | 6:-15570557 | None:intergenic |
| AGAGATGAAGGATCTTGTTT+AGG | 0.408736 | 6:-15570824 | None:intergenic |
| AAGCTAGCAACACACTTGAT+TGG | 0.410299 | 6:+15571017 | MsG0680031174.01.T01:CDS |
| GTAACAAGATCTCCAACATA+AGG | 0.410529 | 6:+15571332 | MsG0680031174.01.T01:CDS |
| CTGTTTCCTCACAAAGAAAC+CGG | 0.419889 | 6:+15570874 | MsG0680031174.01.T01:CDS |
| TAACAAGATCTCCAACATAA+GGG | 0.432336 | 6:+15571333 | MsG0680031174.01.T01:CDS |
| GAAGGATCTTGTTTAGGCAT+TGG | 0.438098 | 6:-15570818 | None:intergenic |
| GGATGAGGATGATGATGAAT+TGG | 0.439281 | 6:-15570695 | None:intergenic |
| TCCAAATCTTTGGAAAATCA+TGG | 0.441718 | 6:+15572779 | MsG0680031174.01.T01:CDS |
| TCGATCTTCAAGACATGTTA+GGG | 0.442491 | 6:+15570987 | MsG0680031174.01.T01:CDS |
| AAACAAGATCCTTCATCTCT+TGG | 0.447067 | 6:+15570827 | MsG0680031174.01.T01:CDS |
| TTCAAACCTAAAACAACAAA+AGG | 0.450238 | 6:+15571180 | MsG0680031174.01.T01:CDS |
| GAAGGAAGAAATGAAGGGTA+AGG | 0.451642 | 6:-15570551 | None:intergenic |
| AGAAGCAGCCAAATTGGTTA+GGG | 0.461051 | 6:-15570750 | None:intergenic |
| GGGTAAGGGTTTGAACTGTA+AGG | 0.461360 | 6:-15570536 | None:intergenic |
| TCAGGATTTAGAAAAGGAAA+AGG | 0.470227 | 6:-15570614 | None:intergenic |
| AGAAACAACAATAGTGAAGT+TGG | 0.485365 | 6:+15571091 | MsG0680031174.01.T01:CDS |
| AACTTGTTGATGATTCCTTA+GGG | 0.488719 | 6:-15571576 | None:intergenic |
| AACAAGATCTCCAACATAAG+GGG | 0.504539 | 6:+15571334 | MsG0680031174.01.T01:CDS |
| GCCAGCATGAATCTTTCTAC+AGG | 0.514455 | 6:+15571703 | MsG0680031174.01.T01:CDS |
| CAAGATCCTTCATCTCTTGG+TGG | 0.514947 | 6:+15570830 | MsG0680031174.01.T01:CDS |
| TGATGATGAATTGGTATGTA+AGG | 0.518747 | 6:-15570686 | None:intergenic |
| AGCAAGATTTACACTTCTCA+AGG | 0.521241 | 6:+15570914 | MsG0680031174.01.T01:CDS |
| TCTTCACCGGTTTCTTTGTG+AGG | 0.525305 | 6:-15570880 | None:intergenic |
| ATACTAATGTAGACGTGGAT+TGG | 0.530503 | 6:-15572812 | None:intergenic |
| TGTTAGAGCAAGTAAGATGA+AGG | 0.539973 | 6:+15571267 | MsG0680031174.01.T01:CDS |
| ACCTGTAGAAAGATTCATGC+TGG | 0.544633 | 6:-15571704 | None:intergenic |
| CAAGTAAGATGAAGGAGTCA+AGG | 0.547238 | 6:+15571275 | MsG0680031174.01.T01:CDS |
| CCAAATCTTTGGAAAATCAT+GGG | 0.551226 | 6:+15572780 | MsG0680031174.01.T01:CDS |
| GAAGAACCACCAAGAGATGA+AGG | 0.554071 | 6:-15570836 | None:intergenic |
| TTTGAACTGTAAGGGAACAT+TGG | 0.556540 | 6:-15570527 | None:intergenic |
| TTCGGAATCTTCGCAATCTG+AGG | 0.558441 | 6:-15571140 | None:intergenic |
| TTACTTGCTCTAACACAAGC+AGG | 0.558716 | 6:-15571259 | None:intergenic |
| AAACAACAAAAGGAAGGTGC+AGG | 0.560333 | 6:+15571190 | MsG0680031174.01.T01:CDS |
| CTCAAGGTTTGAGAGATCGA+AGG | 0.562321 | 6:+15570930 | MsG0680031174.01.T01:CDS |
| AAGTAAGATGAAGGAGTCAA+GGG | 0.565392 | 6:+15571276 | MsG0680031174.01.T01:CDS |
| GAAGTTGAAACCATCCATGA+TGG | 0.569011 | 6:+15571498 | MsG0680031174.01.T01:CDS |
| AAAAGCAAGAGCAAGAGCAA+GGG | 0.571859 | 6:+15571300 | MsG0680031174.01.T01:CDS |
| TCAAAATCATGTGATCCCTA+AGG | 0.574457 | 6:+15571561 | MsG0680031174.01.T01:CDS |
| AAGTGTAAATCTTGCTGTGT+CGG | 0.576609 | 6:-15570907 | None:intergenic |
| TCAACAAGTTTCAACAACAA+TGG | 0.583307 | 6:+15571589 | MsG0680031174.01.T01:CDS |
| TCAAGGTTTGAGAGATCGAA+GGG | 0.597780 | 6:+15570931 | MsG0680031174.01.T01:CDS |
| AACCTAAAACAACAAAAGGA+AGG | 0.605705 | 6:+15571184 | MsG0680031174.01.T01:CDS |
| AAGGAAGAAATGAAGGGTAA+GGG | 0.608387 | 6:-15570550 | None:intergenic |
| GTTTGAGAGATCGAAGGGTG+AGG | 0.608622 | 6:+15570936 | MsG0680031174.01.T01:CDS |
| AACAACAATAGTGAAGTTGG+TGG | 0.611334 | 6:+15571094 | MsG0680031174.01.T01:CDS |
| GGTAAGGGTTTGAACTGTAA+GGG | 0.620661 | 6:-15570535 | None:intergenic |
| GTTGTTGTGAGTAGTAGTGA+AGG | 0.624220 | 6:+15571427 | MsG0680031174.01.T01:CDS |
| ACAAGATCTCCAACATAAGG+GGG | 0.625167 | 6:+15571335 | MsG0680031174.01.T01:CDS |
| ATGTTATGATGATTAGGATG+AGG | 0.644360 | 6:-15570710 | None:intergenic |
| CTAACATACTAATGTAGACG+TGG | 0.657496 | 6:-15572817 | None:intergenic |
| TGATGAGAAACCATCATGGA+TGG | 0.661344 | 6:-15571508 | None:intergenic |
| AATCTTTGGAAAATCATGGG+AGG | 0.671370 | 6:+15572783 | MsG0680031174.01.T01:CDS |
| ATGATGATGAGAAACCATCA+TGG | 0.672178 | 6:-15571512 | None:intergenic |
| AAGATGAAGGAAGAAATGAA+GGG | 0.674975 | 6:-15570556 | None:intergenic |
| CAAGATCTCCAACATAAGGG+GGG | 0.714806 | 6:+15571336 | MsG0680031174.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATACAAAATTTTGA+AGG | + | Chr6:15572549-15572568 | MsG0680031174.01.T01:intron | 10.0% |
| !!! | GTCTTATTTAAATTTAAATA+TGG | - | Chr6:15572709-15572728 | None:intergenic | 10.0% |
| !!! | TAAAAAAATTCTTCAATTTT+TGG | + | Chr6:15572258-15572277 | MsG0680031174.01.T01:intron | 10.0% |
| !! | AATTATCAACGAAAATTAAA+AGG | - | Chr6:15571905-15571924 | None:intergenic | 15.0% |
| !! | ATAACATTAAAATCATTTCT+TGG | - | Chr6:15571454-15571473 | None:intergenic | 15.0% |
| !! | ATTATCAACGAAAATTAAAA+GGG | - | Chr6:15571904-15571923 | None:intergenic | 15.0% |
| !! | TGAAATTAGAAAATTTCATA+GGG | + | Chr6:15572665-15572684 | MsG0680031174.01.T01:intron | 15.0% |
| !! | TTGAAATTAGAAAATTTCAT+AGG | + | Chr6:15572664-15572683 | MsG0680031174.01.T01:intron | 15.0% |
| !! | TTTAAATTTAAATAAGACCT+AGG | + | Chr6:15572711-15572730 | MsG0680031174.01.T01:intron | 15.0% |
| !!! | TTTTTTTTAATACTTAGAGT+TGG | - | Chr6:15571854-15571873 | None:intergenic | 15.0% |
| !! | AAAATCTAAGAAAGCAATTA+AGG | + | Chr6:15571048-15571067 | MsG0680031174.01.T01:CDS | 20.0% |
| !!! | ACATGATTTAATTTAAAAGC+AGG | - | Chr6:15572317-15572336 | None:intergenic | 20.0% |
| !!! | CATGATTTAATTTAAAAGCA+GGG | - | Chr6:15572316-15572335 | None:intergenic | 20.0% |
| !!! | TTTGTTATGTTATGATGATT+AGG | - | Chr6:15570719-15570738 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTGAAGAATTAT+TGG | - | Chr6:15571173-15571192 | None:intergenic | 20.0% |
| ! | AAGAATCAATTGTGATTAAG+AGG | + | Chr6:15571476-15571495 | MsG0680031174.01.T01:CDS | 25.0% |
| ! | AGCAGAAAAATGAAGTTAAT+TGG | - | Chr6:15572107-15572126 | None:intergenic | 25.0% |
| ! | ATATATCATCAAAATCTCCT+AGG | - | Chr6:15572731-15572750 | None:intergenic | 25.0% |
| ! | ATGATATATAGTGATCTAAG+TGG | + | Chr6:15572742-15572761 | MsG0680031174.01.T01:intron | 25.0% |
| ! | CATATTTAACCCATTAAAGA+TGG | - | Chr6:15572195-15572214 | None:intergenic | 25.0% |
| ! | TTAAAAGGGAAAAATCACTA+TGG | - | Chr6:15571890-15571909 | None:intergenic | 25.0% |
| ! | TTCAAACCTAAAACAACAAA+AGG | + | Chr6:15571180-15571199 | MsG0680031174.01.T01:CDS | 25.0% |
| !! | ACATGATTTAACTTAAATGC+AGG | + | Chr6:15572576-15572595 | MsG0680031174.01.T01:intron | 25.0% |
| !! | AGAATTATTGGTAGCAATTT+CGG | - | Chr6:15571161-15571180 | None:intergenic | 25.0% |
| !! | ATCTAAGTGGTAATTTTTCA+GGG | + | Chr6:15572755-15572774 | MsG0680031174.01.T01:intron | 25.0% |
| !! | CCATCTTTTATACTCAAAAA+AGG | - | Chr6:15572072-15572091 | None:intergenic | 25.0% |
| !! | TTGCCGAAGAAAATTTTTAA+GGG | - | Chr6:15572285-15572304 | None:intergenic | 25.0% |
| !! | TTTCTAGTACCATCTTTAAT+GGG | + | Chr6:15572183-15572202 | MsG0680031174.01.T01:intron | 25.0% |
| !!! | CCTTTTTTGAGTATAAAAGA+TGG | + | Chr6:15572069-15572088 | MsG0680031174.01.T01:intron | 25.0% |
| !!! | CTAGTACTTCTTTTAGAAAA+GGG | + | Chr6:15572156-15572175 | MsG0680031174.01.T01:intron | 25.0% |
| !!! | TAATGGGTTAAATATGTTCT+TGG | + | Chr6:15572199-15572218 | MsG0680031174.01.T01:intron | 25.0% |
| !!! | TCTAGTACTTCTTTTAGAAA+AGG | + | Chr6:15572155-15572174 | MsG0680031174.01.T01:intron | 25.0% |
| !!! | TTTTCTAGTACCATCTTTAA+TGG | + | Chr6:15572182-15572201 | MsG0680031174.01.T01:intron | 25.0% |
| AACCTAAAACAACAAAAGGA+AGG | + | Chr6:15571184-15571203 | MsG0680031174.01.T01:CDS | 30.0% | |
| AAGATGAAGGAAGAAATGAA+GGG | - | Chr6:15570559-15570578 | None:intergenic | 30.0% | |
| AATTGGGATGCTAGTAATAA+TGG | + | Chr6:15571643-15571662 | MsG0680031174.01.T01:CDS | 30.0% | |
| AGAAACAACAATAGTGAAGT+TGG | + | Chr6:15571091-15571110 | MsG0680031174.01.T01:CDS | 30.0% | |
| ATGTTATGATGATTAGGATG+AGG | - | Chr6:15570713-15570732 | None:intergenic | 30.0% | |
| GGTATGTAAGGAATTGAAAA+TGG | - | Chr6:15570677-15570696 | None:intergenic | 30.0% | |
| TAACAAGATCTCCAACATAA+GGG | + | Chr6:15571333-15571352 | MsG0680031174.01.T01:CDS | 30.0% | |
| TCAACAAGTTTCAACAACAA+TGG | + | Chr6:15571589-15571608 | MsG0680031174.01.T01:CDS | 30.0% | |
| TCAGGATTTAGAAAAGGAAA+AGG | - | Chr6:15570617-15570636 | None:intergenic | 30.0% | |
| TTATTACTAGCATCCCAATT+TGG | - | Chr6:15571643-15571662 | None:intergenic | 30.0% | |
| ! | AAAAGTTGTGACGAATTTTG+AGG | + | Chr6:15572603-15572622 | MsG0680031174.01.T01:intron | 30.0% |
| ! | AAAGTTGTGACGAATTTTGA+GGG | + | Chr6:15572604-15572623 | MsG0680031174.01.T01:intron | 30.0% |
| ! | AAATTTTCTTCGGCAACTTA+TGG | + | Chr6:15572289-15572308 | MsG0680031174.01.T01:intron | 30.0% |
| ! | CCAAATCTTTGGAAAATCAT+GGG | + | Chr6:15572780-15572799 | MsG0680031174.01.T01:CDS | 30.0% |
| ! | GATCTAAGTGGTAATTTTTC+AGG | + | Chr6:15572754-15572773 | MsG0680031174.01.T01:intron | 30.0% |
| ! | GGTCCCTTAAAAATTTTCTT+CGG | + | Chr6:15572279-15572298 | MsG0680031174.01.T01:intron | 30.0% |
| ! | GTTGCCGAAGAAAATTTTTA+AGG | - | Chr6:15572286-15572305 | None:intergenic | 30.0% |
| ! | TCAAAATTCGTCACAACTTT+TGG | - | Chr6:15572604-15572623 | None:intergenic | 30.0% |
| ! | TCCAAATCTTTGGAAAATCA+TGG | + | Chr6:15572779-15572798 | MsG0680031174.01.T01:CDS | 30.0% |
| ! | TGATGATGAATTGGTATGTA+AGG | - | Chr6:15570689-15570708 | None:intergenic | 30.0% |
| !! | AAACTTGTTGATGATTCCTT+AGG | - | Chr6:15571580-15571599 | None:intergenic | 30.0% |
| !! | AACTTGTTGATGATTCCTTA+GGG | - | Chr6:15571579-15571598 | None:intergenic | 30.0% |
| !! | ACATGATTTTGATGGTAATG+AGG | - | Chr6:15571553-15571572 | None:intergenic | 30.0% |
| !! | GCATTTTCAGGATTTAGAAA+AGG | - | Chr6:15570623-15570642 | None:intergenic | 30.0% |
| !!! | TTGTTTGAAGAAGCATTTTC+AGG | - | Chr6:15570635-15570654 | None:intergenic | 30.0% |
| AAACAAGATCCTTCATCTCT+TGG | + | Chr6:15570827-15570846 | MsG0680031174.01.T01:CDS | 35.0% | |
| AACAACAATAGTGAAGTTGG+TGG | + | Chr6:15571094-15571113 | MsG0680031174.01.T01:CDS | 35.0% | |
| AACAAGATCTCCAACATAAG+GGG | + | Chr6:15571334-15571353 | MsG0680031174.01.T01:CDS | 35.0% | |
| AAGGAAGAAATGAAGGGTAA+GGG | - | Chr6:15570553-15570572 | None:intergenic | 35.0% | |
| AAGTAAGATGAAGGAGTCAA+GGG | + | Chr6:15571276-15571295 | MsG0680031174.01.T01:CDS | 35.0% | |
| AGCAAGATTTACACTTCTCA+AGG | + | Chr6:15570914-15570933 | MsG0680031174.01.T01:CDS | 35.0% | |
| GAAGAAGAAGAAGAAGATGA+AGG | - | Chr6:15570572-15570591 | None:intergenic | 35.0% | |
| GAAGATGAAGGAAGAAATGA+AGG | - | Chr6:15570560-15570579 | None:intergenic | 35.0% | |
| GCCAAATTCATCTCCAAATT+GGG | + | Chr6:15571627-15571646 | MsG0680031174.01.T01:CDS | 35.0% | |
| GTAACAAGATCTCCAACATA+AGG | + | Chr6:15571332-15571351 | MsG0680031174.01.T01:CDS | 35.0% | |
| TCAAAATCATGTGATCCCTA+AGG | + | Chr6:15571561-15571580 | MsG0680031174.01.T01:CDS | 35.0% | |
| TCCCAATTTGGAGATGAATT+TGG | - | Chr6:15571631-15571650 | None:intergenic | 35.0% | |
| TCGATCTTCAAGACATGTTA+GGG | + | Chr6:15570987-15571006 | MsG0680031174.01.T01:CDS | 35.0% | |
| TGCCAAATTCATCTCCAAAT+TGG | + | Chr6:15571626-15571645 | MsG0680031174.01.T01:CDS | 35.0% | |
| TGTTAGAGCAAGTAAGATGA+AGG | + | Chr6:15571267-15571286 | MsG0680031174.01.T01:CDS | 35.0% | |
| TTCGATCTTCAAGACATGTT+AGG | + | Chr6:15570986-15571005 | MsG0680031174.01.T01:CDS | 35.0% | |
| ! | AAGTGTAAATCTTGCTGTGT+CGG | - | Chr6:15570910-15570929 | None:intergenic | 35.0% |
| ! | AATCTTTGGAAAATCATGGG+AGG | + | Chr6:15572783-15572802 | MsG0680031174.01.T01:CDS | 35.0% |
| ! | AGAGATGAAGGATCTTGTTT+AGG | - | Chr6:15570827-15570846 | None:intergenic | 35.0% |
| ! | ATGATGATGAGAAACCATCA+TGG | - | Chr6:15571515-15571534 | None:intergenic | 35.0% |
| ! | CCCATGATTTTCCAAAGATT+TGG | - | Chr6:15572783-15572802 | None:intergenic | 35.0% |
| ! | CTTTTCAACTTCTTCTCTTC+AGG | - | Chr6:15571223-15571242 | None:intergenic | 35.0% |
| ! | TAGGGATCACATGATTTTGA+TGG | - | Chr6:15571561-15571580 | None:intergenic | 35.0% |
| !! | TGATTTTGATGGTAATGAGG+AGG | - | Chr6:15571550-15571569 | None:intergenic | 35.0% |
| !!! | CACCTTCCTTTTGTTGTTTT+AGG | - | Chr6:15571189-15571208 | None:intergenic | 35.0% |
| AAAAAGCAAGAGCAAGAGCA+AGG | + | Chr6:15571299-15571318 | MsG0680031174.01.T01:CDS | 40.0% | |
| AAAAGCAAGAGCAAGAGCAA+GGG | + | Chr6:15571300-15571319 | MsG0680031174.01.T01:CDS | 40.0% | |
| AAGCTAGCAACACACTTGAT+TGG | + | Chr6:15571017-15571036 | MsG0680031174.01.T01:CDS | 40.0% | |
| ACAAAAAGTGGAGCGATTAG+TGG | - | Chr6:15571677-15571696 | None:intergenic | 40.0% | |
| ACAAGATCTCCAACATAAGG+GGG | + | Chr6:15571335-15571354 | MsG0680031174.01.T01:CDS | 40.0% | |
| ACCTGTAGAAAGATTCATGC+TGG | - | Chr6:15571707-15571726 | None:intergenic | 40.0% | |
| AGAAGCAGCCAAATTGGTTA+GGG | - | Chr6:15570753-15570772 | None:intergenic | 40.0% | |
| CAAGTAAGATGAAGGAGTCA+AGG | + | Chr6:15571275-15571294 | MsG0680031174.01.T01:CDS | 40.0% | |
| CTGTTTCCTCACAAAGAAAC+CGG | + | Chr6:15570874-15570893 | MsG0680031174.01.T01:CDS | 40.0% | |
| GAAGGAAGAAATGAAGGGTA+AGG | - | Chr6:15570554-15570573 | None:intergenic | 40.0% | |
| GAAGTTGAAACCATCCATGA+TGG | + | Chr6:15571498-15571517 | MsG0680031174.01.T01:CDS | 40.0% | |
| GGTAAGGGTTTGAACTGTAA+GGG | - | Chr6:15570538-15570557 | None:intergenic | 40.0% | |
| GTTGTTGTGAGTAGTAGTGA+AGG | + | Chr6:15571427-15571446 | MsG0680031174.01.T01:CDS | 40.0% | |
| TCAAGGTTTGAGAGATCGAA+GGG | + | Chr6:15570931-15570950 | MsG0680031174.01.T01:CDS | 40.0% | |
| TCCAGAAACCCTAACCAATT+TGG | + | Chr6:15570742-15570761 | MsG0680031174.01.T01:CDS | 40.0% | |
| TGATGAGAAACCATCATGGA+TGG | - | Chr6:15571511-15571530 | None:intergenic | 40.0% | |
| TTACTTGCTCTAACACAAGC+AGG | - | Chr6:15571262-15571281 | None:intergenic | 40.0% | |
| TTCTTGAGAAGCAGCCAAAT+TGG | - | Chr6:15570759-15570778 | None:intergenic | 40.0% | |
| ! | AAACAACAAAAGGAAGGTGC+AGG | + | Chr6:15571190-15571209 | MsG0680031174.01.T01:CDS | 40.0% |
| ! | GAAGGATCTTGTTTAGGCAT+TGG | - | Chr6:15570821-15570840 | None:intergenic | 40.0% |
| ! | GGATGAGGATGATGATGAAT+TGG | - | Chr6:15570698-15570717 | None:intergenic | 40.0% |
| !! | TTTTCAGGGCTCCAAATCTT+TGG | + | Chr6:15572769-15572788 | MsG0680031174.01.T01:intron | 40.0% |
| CAAGATCCTTCATCTCTTGG+TGG | + | Chr6:15570830-15570849 | MsG0680031174.01.T01:CDS | 45.0% | |
| CAAGATCTCCAACATAAGGG+GGG | + | Chr6:15571336-15571355 | MsG0680031174.01.T01:CDS | 45.0% | |
| CGGTTTCTTTGTGAGGAAAC+AGG | - | Chr6:15570876-15570895 | None:intergenic | 45.0% | |
| CTCAAGGTTTGAGAGATCGA+AGG | + | Chr6:15570930-15570949 | MsG0680031174.01.T01:CDS | 45.0% | |
| GAAGAACCACCAAGAGATGA+AGG | - | Chr6:15570839-15570858 | None:intergenic | 45.0% | |
| GAGAAGCAGCCAAATTGGTT+AGG | - | Chr6:15570754-15570773 | None:intergenic | 45.0% | |
| GCCAAATTGGTTAGGGTTTC+TGG | - | Chr6:15570746-15570765 | None:intergenic | 45.0% | |
| GCCAGCATGAATCTTTCTAC+AGG | + | Chr6:15571703-15571722 | MsG0680031174.01.T01:CDS | 45.0% | |
| GGGTAAGGGTTTGAACTGTA+AGG | - | Chr6:15570539-15570558 | None:intergenic | 45.0% | |
| TTCGGAATCTTCGCAATCTG+AGG | - | Chr6:15571143-15571162 | None:intergenic | 45.0% | |
| ! | CTTGGTGGTTCTTCTCACTA+TGG | + | Chr6:15570845-15570864 | MsG0680031174.01.T01:CDS | 45.0% |
| !! | TCTTCACCGGTTTCTTTGTG+AGG | - | Chr6:15570883-15570902 | None:intergenic | 45.0% |
| !!! | TAAATTTTAACTTTTTTTTT+TGG | - | Chr6:15571973-15571992 | None:intergenic | 5.0% |
| !!! | TCTTATTTAAATTTAAATAT+GGG | - | Chr6:15572708-15572727 | None:intergenic | 5.0% |
| GCTGGCTACAGCACAAAAAG+TGG | - | Chr6:15571689-15571708 | None:intergenic | 50.0% | |
| GTTTGAGAGATCGAAGGGTG+AGG | + | Chr6:15570936-15570955 | MsG0680031174.01.T01:CDS | 50.0% | |
| TTCTTGCACCCCCCTTATGT+TGG | - | Chr6:15571347-15571366 | None:intergenic | 50.0% | |
| ! | CTGTGTCGGTCTTTCTTCAC+CGG | - | Chr6:15570896-15570915 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 15570530 | 15572831 | 15570530 | ID=MsG0680031174.01;Name=MsG0680031174.01 |
| Chr6 | mRNA | 15570530 | 15572831 | 15570530 | ID=MsG0680031174.01.T01;Parent=MsG0680031174.01;Name=MsG0680031174.01.T01;_AED=0.44;_eAED=0.45;_QI=0|0|0|1|0|0|2|0|421 |
| Chr6 | exon | 15570530 | 15571739 | 15570530 | ID=MsG0680031174.01.T01:exon:10475;Parent=MsG0680031174.01.T01 |
| Chr6 | exon | 15572776 | 15572831 | 15572776 | ID=MsG0680031174.01.T01:exon:10476;Parent=MsG0680031174.01.T01 |
| Chr6 | CDS | 15570530 | 15571739 | 15570530 | ID=MsG0680031174.01.T01:cds;Parent=MsG0680031174.01.T01 |
| Chr6 | CDS | 15572776 | 15572831 | 15572776 | ID=MsG0680031174.01.T01:cds;Parent=MsG0680031174.01.T01 |
| Gene Sequence |
| Protein sequence |
