AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032152.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032152.01.T01 MTR_3g465280 64.000 75 23 3 15 88 9 80 1.53e-23 96.7
MsG0680032152.01.T01 MTR_3g465280 42.342 111 54 5 2 110 91 193 9.12e-15 72.4
MsG0680032152.01.T01 MTR_4g079500 44.211 95 53 0 101 195 194 288 1.91e-18 83.2
MsG0680032152.01.T01 MTR_2g090900 43.158 95 54 0 101 195 191 285 1.77e-17 80.5
MsG0680032152.01.T01 MTR_2g090900 43.158 95 54 0 101 195 191 285 2.72e-17 79.7
MsG0680032152.01.T01 MTR_6g034945 35.088 114 74 0 100 213 150 263 1.52e-11 63.5
MsG0680032152.01.T01 MTR_5g075390 33.071 127 77 1 75 193 125 251 2.51e-11 63.2
MsG0680032152.01.T01 MTR_3g467120 38.298 94 58 0 100 193 176 269 3.05e-11 62.8
MsG0680032152.01.T01 MTR_4g072090 35.922 103 66 0 101 203 360 462 7.22e-11 62.0
MsG0680032152.01.T01 MTR_2g099050 36.458 96 61 0 100 195 220 315 8.00e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032152.01.T01 AT2G42380 41.071 112 66 0 84 195 169 280 1.55e-19 86.3
MsG0680032152.01.T01 AT3G58120 40.708 113 66 1 83 195 185 296 9.01e-19 84.0
MsG0680032152.01.T01 AT2G42380 42.708 96 55 0 84 179 169 264 4.87e-17 78.6
MsG0680032152.01.T01 AT3G58120 42.268 97 55 1 83 179 185 280 2.87e-16 76.6
MsG0680032152.01.T01 AT2G42380 35.714 112 61 1 84 195 169 269 1.31e-13 69.3
MsG0680032152.01.T01 AT5G07160 40.860 93 55 0 101 193 48 140 4.31e-12 62.4
MsG0680032152.01.T01 AT2G40620 38.298 94 58 0 100 193 147 240 3.83e-11 62.4
MsG0680032152.01.T01 AT1G43700 39.362 94 57 0 100 193 193 286 5.40e-11 62.0
MsG0680032152.01.T01 AT2G31370 35.849 106 68 0 100 205 200 305 7.71e-11 61.6
MsG0680032152.01.T01 AT1G06070 37.500 96 60 0 100 195 209 304 9.56e-11 61.6

Find 49 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTTAACCAGCTGAAAT+TGG 0.206191 6:+35065487 MsG0680032152.01.T01:intron
CAGCTATTTCAAGTCTTAAT+TGG 0.226858 6:-35064407 None:intergenic
GCTCGATTATATTGCTGATT+TGG 0.235809 6:+35063751 MsG0680032152.01.T01:CDS
CTAACCATGCTTGATTTCTT+AGG 0.248352 6:-35062943 None:intergenic
GCATGACCAAGATTTGATTT+TGG 0.261059 6:-35063105 None:intergenic
GTATACCGTTTGAGCCTCTT+TGG 0.278573 6:-35063204 None:intergenic
TTCTCCATATTATGCTCATT+TGG 0.286048 6:-35065559 None:intergenic
CAGACCAAATGAGCATAATA+TGG 0.328196 6:+35065555 MsG0680032152.01.T01:CDS
TTATGCTCATTTGGTCTGAT+TGG 0.342932 6:-35065550 None:intergenic
ATAAGAGAGCTGAGGTGAAT+AGG 0.348904 6:+35064561 MsG0680032152.01.T01:CDS
TTCGATCATGGCAACCCTCT+TGG 0.403712 6:+35062995 MsG0680032152.01.T01:CDS
AGTGTACCAAAATCAAATCT+TGG 0.459311 6:+35063099 MsG0680032152.01.T01:CDS
CGTCATCAACATTTCGATCA+TGG 0.470936 6:+35062983 MsG0680032152.01.T01:CDS
ATGGTTAGACCTTCCTCATA+TGG 0.474139 6:+35062958 MsG0680032152.01.T01:CDS
TATTGCTGATTTGGAGCGGA+TGG 0.492832 6:+35063760 MsG0680032152.01.T01:CDS
TCTTAATTGGTGGTGTTCCA+TGG 0.506174 6:-35064394 None:intergenic
CTATTTCAAGTCTTAATTGG+TGG 0.506362 6:-35064404 None:intergenic
TGGATCCAAAGAGGCTCAAA+CGG 0.511736 6:+35063199 MsG0680032152.01.T01:CDS
AAACAAGAGGCGAGTAGCAG+TGG 0.525757 6:+35063036 MsG0680032152.01.T01:CDS
GAGCTGAGGTGAATAGGCTG+AGG 0.526514 6:+35064567 MsG0680032152.01.T01:CDS
GGCATCCCAAAGAGAATGAC+TGG 0.538746 6:+35062886 None:intergenic
GTGCAGAAATTCGATTTGCT+AGG 0.542578 6:-35063709 None:intergenic
ATGCTTGATTTCTTAGGCCC+AGG 0.543325 6:-35062937 None:intergenic
AACATGTTGCACACAGAAGA+GGG 0.550817 6:+35062913 MsG0680032152.01.T01:CDS
TTGCACACAGAAGAGGGACC+TGG 0.552875 6:+35062919 MsG0680032152.01.T01:CDS
TGTTGATGACGATCCATATG+AGG 0.557119 6:-35062971 None:intergenic
AGACTTCAACTTGTGGGCGA+AGG 0.559195 6:-35064347 None:intergenic
GATTGAGAATAAGAGAGCTG+AGG 0.559603 6:+35064553 MsG0680032152.01.T01:CDS
GCATCTGCATGTGTTGGTGT+TGG 0.564639 6:+35063156 MsG0680032152.01.T01:CDS
ATGCACTACCGCCACTGATG+TGG 0.592583 6:-35063137 None:intergenic
TTAACCAGCTGAAATTGGAG+AGG 0.595636 6:+35065492 MsG0680032152.01.T01:intron
TGCACACAGAAGAGGGACCT+GGG 0.596481 6:+35062920 MsG0680032152.01.T01:CDS
TTGCTGAAGCACAAAACAAG+AGG 0.602002 6:+35064609 MsG0680032152.01.T01:CDS
AAACATGTTGCACACAGAAG+AGG 0.606246 6:+35062912 MsG0680032152.01.T01:CDS
GGTAGTGCATCTGCATGTGT+TGG 0.606657 6:+35063150 MsG0680032152.01.T01:CDS
AGCTGAGGTGAATAGGCTGA+GGG 0.614102 6:+35064568 MsG0680032152.01.T01:CDS
TCAGCAGTGGCTGTTGACCA+TGG 0.614613 6:+35064377 MsG0680032152.01.T01:CDS
ATTATATTGCTGATTTGGAG+CGG 0.619255 6:+35063756 MsG0680032152.01.T01:CDS
AAAGAAAGGATACTTCAAGA+AGG 0.624481 6:+35064438 MsG0680032152.01.T01:CDS
AGGTCAATGCTCTTCCAAGA+GGG 0.634364 6:-35063009 None:intergenic
TACTCGCCTCTTGTTTACCG+AGG 0.637734 6:-35063029 None:intergenic
CATTGACCTCGGTAAACAAG+AGG 0.644199 6:+35063023 MsG0680032152.01.T01:CDS
GATGACGATCCATATGAGGA+AGG 0.651960 6:-35062967 None:intergenic
GCTGATAAGAACCACATCAG+TGG 0.656705 6:+35063126 MsG0680032152.01.T01:CDS
GAGGTCAATGCTCTTCCAAG+AGG 0.660030 6:-35063010 None:intergenic
GATAAGAACCACATCAGTGG+CGG 0.669214 6:+35063129 MsG0680032152.01.T01:CDS
TGGGCCTAAGAAATCAAGCA+TGG 0.672738 6:+35062939 MsG0680032152.01.T01:CDS
TCTTGGAAGAGCATTGACCT+CGG 0.690835 6:+35063012 MsG0680032152.01.T01:CDS
AAATTGGAGAGGAATCGTCA+AGG 0.703846 6:+35065503 MsG0680032152.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTGAAAAAAAAATTAATAA+TGG + Chr6:35063365-35063384 MsG0680032152.01.T01:intron 10.0%
!! TAATATAGAAAAATATGTTA+TGG - Chr6:35065337-35065356 None:intergenic 10.0%
!! AAAATCATTGTAAACAATAT+CGG - Chr6:35065134-35065153 None:intergenic 15.0%
!! AAAATTGAAACAAAATATCT+CGG + Chr6:35063613-35063632 MsG0680032152.01.T01:intron 15.0%
!! ATTAAAATAAATCTATACGT+TGG + Chr6:35063483-35063502 MsG0680032152.01.T01:intron 15.0%
!!! AAAAAAAAATTAATAATGGG+AGG + Chr6:35063369-35063388 MsG0680032152.01.T01:intron 15.0%
!!! GATTTTTTTCAATTTCAATT+TGG - Chr6:35063957-35063976 None:intergenic 15.0%
!! ACATACTAATGTGAAATAAA+TGG - Chr6:35064519-35064538 None:intergenic 20.0%
!! ACTCATACATGATAAAAATA+TGG + Chr6:35064753-35064772 MsG0680032152.01.T01:intron 20.0%
!! ATAGATCAATTATGATTGAA+TGG - Chr6:35064117-35064136 None:intergenic 20.0%
!! GTCGATTATTTGTATTAATT+TGG + Chr6:35064056-35064075 MsG0680032152.01.T01:intron 20.0%
!! GTTGTTTATTATAGATCAAA+CGG - Chr6:35065176-35065195 None:intergenic 20.0%
!!! ACTTCTATCATGTTTTTTTA+GGG + Chr6:35065389-35065408 MsG0680032152.01.T01:intron 20.0%
!!! ATATTATATCGATTATGTGT+AGG - Chr6:35063649-35063668 None:intergenic 20.0%
!!! CAAATTCGTTTTTTGTTTTA+AGG - Chr6:35064975-35064994 None:intergenic 20.0%
!!! GATTTTTTTTTTGTATATGC+AGG + Chr6:35064311-35064330 MsG0680032152.01.T01:intron 20.0%
!!! TACTTCTATCATGTTTTTTT+AGG + Chr6:35065388-35065407 MsG0680032152.01.T01:intron 20.0%
!!! TTATTAGTTTTTTTGTCTTG+TGG - Chr6:35063075-35063094 None:intergenic 20.0%
! ATGAATATGTAAGTAGGTAT+GGG - Chr6:35065286-35065305 None:intergenic 25.0%
! ATTAGTATGTTTATTTCCAG+TGG + Chr6:35064529-35064548 MsG0680032152.01.T01:intron 25.0%
! CAGTTGGCAAATTAAAAATA+TGG + Chr6:35063264-35063283 MsG0680032152.01.T01:intron 25.0%
! CATAACACTAAAAGTTTGAT+GGG + Chr6:35063306-35063325 MsG0680032152.01.T01:intron 25.0%
! GTCAATATGAATATGTAAGT+AGG - Chr6:35065292-35065311 None:intergenic 25.0%
! TAGTATACTGATATATGTTG+CGG + Chr6:35064999-35065018 MsG0680032152.01.T01:intron 25.0%
! TATGAATATGTAAGTAGGTA+TGG - Chr6:35065287-35065306 None:intergenic 25.0%
! TCATAACACTAAAAGTTTGA+TGG + Chr6:35063305-35063324 MsG0680032152.01.T01:intron 25.0%
! TCATGTATCAACTTGTAATT+TGG + Chr6:35064137-35064156 MsG0680032152.01.T01:intron 25.0%
! TCTTGATCTGATTATTTGAA+TGG + Chr6:35064195-35064214 MsG0680032152.01.T01:intron 25.0%
! TGACATTCAATTAACATAGT+GGG + Chr6:35065308-35065327 MsG0680032152.01.T01:intron 25.0%
! TTGACATTCAATTAACATAG+TGG + Chr6:35065307-35065326 MsG0680032152.01.T01:intron 25.0%
!! ACTCTTCATAAGTTTTTGTT+TGG - Chr6:35064282-35064301 None:intergenic 25.0%
!! CAAATTGAAATTCTTTGAAG+TGG - Chr6:35064037-35064056 None:intergenic 25.0%
!!! CTCTTCATAAGTTTTTGTTT+GGG - Chr6:35064281-35064300 None:intergenic 25.0%
AAAGAAAGGATACTTCAAGA+AGG + Chr6:35064438-35064457 MsG0680032152.01.T01:CDS 30.0%
AAATTCAGATCCAAAAAGCA+GGG - Chr6:35065053-35065072 None:intergenic 30.0%
AATTCTGTGATTTATTCGAG+CGG + Chr6:35065217-35065236 MsG0680032152.01.T01:intron 30.0%
AGATCAAACGGTTCAAATTA+AGG - Chr6:35065164-35065183 None:intergenic 30.0%
AGTGTACCAAAATCAAATCT+TGG + Chr6:35063099-35063118 MsG0680032152.01.T01:CDS 30.0%
AGTTTGATGGGAATAGTATT+TGG + Chr6:35063318-35063337 MsG0680032152.01.T01:intron 30.0%
CAAATCAACTATATTAGCCA+GGG - Chr6:35063558-35063577 None:intergenic 30.0%
GAATTTCCTATTGTTAGAAC+AGG + Chr6:35065067-35065086 MsG0680032152.01.T01:intron 30.0%
GATCAAACGGTTCAAATTAA+GGG - Chr6:35065163-35065182 None:intergenic 30.0%
TATAATTATATGTGTGCTCG+CGG + Chr6:35064912-35064931 MsG0680032152.01.T01:intron 30.0%
TCAAATCAACTATATTAGCC+AGG - Chr6:35063559-35063578 None:intergenic 30.0%
TGAATATGTAAGTAGGTATG+GGG - Chr6:35065285-35065304 None:intergenic 30.0%
TTCTCCATATTATGCTCATT+TGG - Chr6:35065562-35065581 None:intergenic 30.0%
TTTCTTTAACCAGCTGAAAT+TGG + Chr6:35065487-35065506 MsG0680032152.01.T01:intron 30.0%
! AAAGTGAGAGTATAGATAGA+AGG + Chr6:35064830-35064849 MsG0680032152.01.T01:intron 30.0%
! CAGCTATTTCAAGTCTTAAT+TGG - Chr6:35064410-35064429 None:intergenic 30.0%
! CTATTTCAAGTCTTAATTGG+TGG - Chr6:35064407-35064426 None:intergenic 30.0%
! TTTTGTAGACTTCAACTTGT+GGG - Chr6:35064356-35064375 None:intergenic 30.0%
! TTTTGTCTTCTGTTGATCTT+AGG + Chr6:35063684-35063703 MsG0680032152.01.T01:intron 30.0%
! TTTTTGTAGACTTCAACTTG+TGG - Chr6:35064357-35064376 None:intergenic 30.0%
!! AGTTTTTGTTTGGGTAGATA+TGG - Chr6:35064272-35064291 None:intergenic 30.0%
!! ATACGTTGGTTTAAGTTTCA+TGG + Chr6:35063497-35063516 MsG0680032152.01.T01:intron 30.0%
!! ATTATATTGCTGATTTGGAG+CGG + Chr6:35063756-35063775 MsG0680032152.01.T01:CDS 30.0%
!!! AATGGGAGGTTGTTTTATTT+AGG + Chr6:35063383-35063402 MsG0680032152.01.T01:intron 30.0%
!!! TGTTTTATTTAGGCTTGTCA+TGG + Chr6:35063393-35063412 MsG0680032152.01.T01:intron 30.0%
!!! TTTCAAGTTGTTTTGCATCT+TGG - Chr6:35065198-35065217 None:intergenic 30.0%
AAGTCTACAAAAATCAGCAG+TGG + Chr6:35064364-35064383 MsG0680032152.01.T01:CDS 35.0%
AATTCAGATCCAAAAAGCAG+GGG - Chr6:35065052-35065071 None:intergenic 35.0%
ACCTTCAGATCTTAAATGTG+TGG + Chr6:35065108-35065127 MsG0680032152.01.T01:intron 35.0%
ATTCTGTGATTTATTCGAGC+GGG + Chr6:35065218-35065237 MsG0680032152.01.T01:intron 35.0%
CAGACCAAATGAGCATAATA+TGG + Chr6:35065555-35065574 MsG0680032152.01.T01:CDS 35.0%
CATCTATTAATGTGATACCC+TGG + Chr6:35063538-35063557 MsG0680032152.01.T01:intron 35.0%
CATTCTCATCAAAAGACCAT+AGG - Chr6:35063911-35063930 None:intergenic 35.0%
CTAACCATGCTTGATTTCTT+AGG - Chr6:35062946-35062965 None:intergenic 35.0%
GAAAATACACGCAAACACAA+AGG - Chr6:35064783-35064802 None:intergenic 35.0%
GAAATTCAGATCCAAAAAGC+AGG - Chr6:35065054-35065073 None:intergenic 35.0%
GAATATGTAAGTAGGTATGG+GGG - Chr6:35065284-35065303 None:intergenic 35.0%
GAGAAAATCACTAAGGAAGA+GGG - Chr6:35065262-35065281 None:intergenic 35.0%
TAGAAGTAGTGAAGCAGATA+CGG - Chr6:35065376-35065395 None:intergenic 35.0%
TAGCTGTACGAGAAAAAGAA+AGG + Chr6:35064424-35064443 MsG0680032152.01.T01:CDS 35.0%
TGAGCAACACAAAAATCAGT+TGG + Chr6:35063248-35063267 MsG0680032152.01.T01:intron 35.0%
TGATCAAGCAACACAAAAAC+TGG + Chr6:35063179-35063198 MsG0680032152.01.T01:CDS 35.0%
TGTTTGACCCAAAACAACAA+GGG + Chr6:35064233-35064252 MsG0680032152.01.T01:intron 35.0%
TTATGCTCATTTGGTCTGAT+TGG - Chr6:35065553-35065572 None:intergenic 35.0%
TTGTTTGACCCAAAACAACA+AGG + Chr6:35064232-35064251 MsG0680032152.01.T01:intron 35.0%
TTTGTTTGGGTAGATATGGT+GGG - Chr6:35064268-35064287 None:intergenic 35.0%
! GCTCGATTATATTGCTGATT+TGG + Chr6:35063751-35063770 MsG0680032152.01.T01:CDS 35.0%
!! GCATGACCAAGATTTGATTT+TGG - Chr6:35063108-35063127 None:intergenic 35.0%
!! TTTTGTTTGGGTAGATATGG+TGG - Chr6:35064269-35064288 None:intergenic 35.0%
!!! ATATGGATCCCTTGTTGTTT+TGG - Chr6:35064244-35064263 None:intergenic 35.0%
!!! TATGGATCCCTTGTTGTTTT+GGG - Chr6:35064243-35064262 None:intergenic 35.0%
AAACATGTTGCACACAGAAG+AGG + Chr6:35062912-35062931 MsG0680032152.01.T01:CDS 40.0%
AAATTGGAGAGGAATCGTCA+AGG + Chr6:35065503-35065522 MsG0680032152.01.T01:CDS 40.0%
AACATGTTGCACACAGAAGA+GGG + Chr6:35062913-35062932 MsG0680032152.01.T01:CDS 40.0%
ACTGATATATGTTGCGGTTG+TGG + Chr6:35065005-35065024 MsG0680032152.01.T01:intron 40.0%
ATAAGAGAGCTGAGGTGAAT+AGG + Chr6:35064561-35064580 MsG0680032152.01.T01:CDS 40.0%
ATGGTTAGACCTTCCTCATA+TGG + Chr6:35062958-35062977 MsG0680032152.01.T01:CDS 40.0%
CACAAAAACTGGATCCAAAG+AGG + Chr6:35063190-35063209 MsG0680032152.01.T01:CDS 40.0%
CGTCATCAACATTTCGATCA+TGG + Chr6:35062983-35063002 MsG0680032152.01.T01:CDS 40.0%
CTCTTATTCTCAATCTCCAC+TGG - Chr6:35064548-35064567 None:intergenic 40.0%
GATTGAGAATAAGAGAGCTG+AGG + Chr6:35064553-35064572 MsG0680032152.01.T01:CDS 40.0%
GCGGATGGAAAAATATTTGC+AGG + Chr6:35063775-35063794 MsG0680032152.01.T01:CDS 40.0%
GGAGAAAATCACTAAGGAAG+AGG - Chr6:35065263-35065282 None:intergenic 40.0%
TATGGGGGAGAAAATCACTA+AGG - Chr6:35065269-35065288 None:intergenic 40.0%
TTAACCAGCTGAAATTGGAG+AGG + Chr6:35065492-35065511 MsG0680032152.01.T01:intron 40.0%
TTGCTGAAGCACAAAACAAG+AGG + Chr6:35064609-35064628 MsG0680032152.01.T01:CDS 40.0%
! GCCACACATTTAAGATCTGA+AGG - Chr6:35065112-35065131 None:intergenic 40.0%
! GTGCAGAAATTCGATTTGCT+AGG - Chr6:35063712-35063731 None:intergenic 40.0%
!! TCTTAATTGGTGGTGTTCCA+TGG - Chr6:35064397-35064416 None:intergenic 40.0%
!! TGTTGATGACGATCCATATG+AGG - Chr6:35062974-35062993 None:intergenic 40.0%
!! TTCTTTGAAGTGGTAACCAG+CGG - Chr6:35064027-35064046 None:intergenic 40.0%
AGACCATAGGCTTTCACGAT+CGG - Chr6:35063898-35063917 None:intergenic 45.0%
AGGTCAATGCTCTTCCAAGA+GGG - Chr6:35063012-35063031 None:intergenic 45.0%
ATGCTTGATTTCTTAGGCCC+AGG - Chr6:35062940-35062959 None:intergenic 45.0%
CAGCGTCCTGTTCTAACAAT+AGG - Chr6:35065076-35065095 None:intergenic 45.0%
CATTGACCTCGGTAAACAAG+AGG + Chr6:35063023-35063042 MsG0680032152.01.T01:CDS 45.0%
GATAAGAACCACATCAGTGG+CGG + Chr6:35063129-35063148 MsG0680032152.01.T01:CDS 45.0%
GATGACGATCCATATGAGGA+AGG - Chr6:35062970-35062989 None:intergenic 45.0%
GATTCCTCTCCAATTTCAGC+TGG - Chr6:35065499-35065518 None:intergenic 45.0%
GCTGATAAGAACCACATCAG+TGG + Chr6:35063126-35063145 MsG0680032152.01.T01:CDS 45.0%
GTATACCGTTTGAGCCTCTT+TGG - Chr6:35063207-35063226 None:intergenic 45.0%
TGGATCCAAAGAGGCTCAAA+CGG + Chr6:35063199-35063218 MsG0680032152.01.T01:CDS 45.0%
TGGGCCTAAGAAATCAAGCA+TGG + Chr6:35062939-35062958 MsG0680032152.01.T01:CDS 45.0%
TTTATTCGAGCGGGCAATCT+TGG + Chr6:35065227-35065246 MsG0680032152.01.T01:intron 45.0%
! GGGTAGATATGGTGGGAATA+TGG - Chr6:35064261-35064280 None:intergenic 45.0%
!! TATTGCTGATTTGGAGCGGA+TGG + Chr6:35063760-35063779 MsG0680032152.01.T01:CDS 45.0%
!! TCTTGGAAGAGCATTGACCT+CGG + Chr6:35063012-35063031 MsG0680032152.01.T01:CDS 45.0%
!! TTGAAAAAAAAATTAATAAT+GGG + Chr6:35063366-35063385 MsG0680032152.01.T01:intron 5.0%
!!! TTTTTCAAAATTTATAATTA+GGG + Chr6:35064704-35064723 MsG0680032152.01.T01:intron 5.0%
!!! TTTTTTCAAAATTTATAATT+AGG + Chr6:35064703-35064722 MsG0680032152.01.T01:intron 5.0%
AAACAAGAGGCGAGTAGCAG+TGG + Chr6:35063036-35063055 MsG0680032152.01.T01:CDS 50.0%
ACCATAGGCTTTCACGATCG+GGG - Chr6:35063896-35063915 None:intergenic 50.0%
AGACTTCAACTTGTGGGCGA+AGG - Chr6:35064350-35064369 None:intergenic 50.0%
AGCTGAGGTGAATAGGCTGA+GGG + Chr6:35064568-35064587 MsG0680032152.01.T01:CDS 50.0%
ATGTTGCGGTTGTGGCATGT+GGG + Chr6:35065013-35065032 MsG0680032152.01.T01:intron 50.0%
GACCATAGGCTTTCACGATC+GGG - Chr6:35063897-35063916 None:intergenic 50.0%
GAGGTCAATGCTCTTCCAAG+AGG - Chr6:35063013-35063032 None:intergenic 50.0%
GGTAGTGCATCTGCATGTGT+TGG + Chr6:35063150-35063169 MsG0680032152.01.T01:CDS 50.0%
TATGTTGCGGTTGTGGCATG+TGG + Chr6:35065012-35065031 MsG0680032152.01.T01:intron 50.0%
TTCGATCATGGCAACCCTCT+TGG + Chr6:35062995-35063014 MsG0680032152.01.T01:CDS 50.0%
! GCATCTGCATGTGTTGGTGT+TGG + Chr6:35063156-35063175 MsG0680032152.01.T01:CDS 50.0%
! TACTCGCCTCTTGTTTACCG+AGG - Chr6:35063032-35063051 None:intergenic 50.0%
!! GGTTTGTAGCCCCTGCTTTT+TGG + Chr6:35065040-35065059 MsG0680032152.01.T01:intron 50.0%
ATGCACTACCGCCACTGATG+TGG - Chr6:35063140-35063159 None:intergenic 55.0%
GAGCTGAGGTGAATAGGCTG+AGG + Chr6:35064567-35064586 MsG0680032152.01.T01:CDS 55.0%
TCAGCAGTGGCTGTTGACCA+TGG + Chr6:35064377-35064396 MsG0680032152.01.T01:CDS 55.0%
TCCCCGATCGTGAAAGCCTA+TGG + Chr6:35063892-35063911 MsG0680032152.01.T01:intron 55.0%
TGCACACAGAAGAGGGACCT+GGG + Chr6:35062920-35062939 MsG0680032152.01.T01:CDS 55.0%
TGCTCTACATGTAGAGCCGC+TGG + Chr6:35064008-35064027 MsG0680032152.01.T01:intron 55.0%
TTGCACACAGAAGAGGGACC+TGG + Chr6:35062919-35062938 MsG0680032152.01.T01:CDS 55.0%
CGGTTGTGGCATGTGGGTAG+GGG + Chr6:35065019-35065038 MsG0680032152.01.T01:intron 60.0%
GCGGTTGTGGCATGTGGGTA+GGG + Chr6:35065018-35065037 MsG0680032152.01.T01:intron 60.0%
TGCGGTTGTGGCATGTGGGT+AGG + Chr6:35065017-35065036 MsG0680032152.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 35062901 35065585 35062901 ID=MsG0680032152.01;Name=MsG0680032152.01
Chr6 mRNA 35062901 35065585 35062901 ID=MsG0680032152.01.T01;Parent=MsG0680032152.01;Name=MsG0680032152.01.T01;_AED=0.12;_eAED=0.19;_QI=0|0|0|0.8|0.75|0.8|5|0|241
Chr6 exon 35062901 35063220 35062901 ID=MsG0680032152.01.T01:exon:19050;Parent=MsG0680032152.01.T01
Chr6 exon 35063706 35063796 35063706 ID=MsG0680032152.01.T01:exon:19051;Parent=MsG0680032152.01.T01
Chr6 exon 35064333 35064459 35064333 ID=MsG0680032152.01.T01:exon:19052;Parent=MsG0680032152.01.T01
Chr6 exon 35064549 35064650 35064549 ID=MsG0680032152.01.T01:exon:19053;Parent=MsG0680032152.01.T01
Chr6 exon 35065500 35065585 35065500 ID=MsG0680032152.01.T01:exon:19054;Parent=MsG0680032152.01.T01
Chr6 CDS 35062901 35063220 35062901 ID=MsG0680032152.01.T01:cds;Parent=MsG0680032152.01.T01
Chr6 CDS 35063706 35063796 35063706 ID=MsG0680032152.01.T01:cds;Parent=MsG0680032152.01.T01
Chr6 CDS 35064333 35064459 35064333 ID=MsG0680032152.01.T01:cds;Parent=MsG0680032152.01.T01
Chr6 CDS 35064549 35064650 35064549 ID=MsG0680032152.01.T01:cds;Parent=MsG0680032152.01.T01
Chr6 CDS 35065500 35065585 35065500 ID=MsG0680032152.01.T01:cds;Parent=MsG0680032152.01.T01
Gene Sequence

>MsG0680032152.01.T01

ATGACTGGTACAAACATGTTGCACACAGAAGAGGGACCTGGGCCTAAGAAATCAAGCATGGTTAGACCTTCCTCATATGGATCGTCATCAACATTTCGATCATGGCAACCCTCTTGGAAGAGCATTGACCTCGGTAAACAAGAGGCGAGTAGCAGTGGAGTCAAAGCAACTCCACAAGACAAAAAAACTAATAACATTAGTGTACCAAAATCAAATCTTGGTCATGCTGATAAGAACCACATCAGTGGCGGTAGTGCATCTGCATGTGTTGGTGTTGGTGATCAAGCAACACAAAAACTGGATCCAAAGAGGCTCAAACGGATCCTAGCAAATCGAATTTCTGCACAAAAATCGAGATTGAAAAAGCTCGATTATATTGCTGATTTGGAGCGGATGGAAAAATATTTGCAGGCTGAGTTATCTTTCCTTCGCCCACAAGTTGAAGTCTACAAAAATCAGCAGTGGCTGTTGACCATGGAACACCACCAATTAAGACTTGAAATAGCTGTACGAGAAAAAGAAAGGATACTTCAAGAAGTGGAGATTGAGAATAAGAGAGCTGAGGTGAATAGGCTGAGGGAGCTTCAGAAGAAACTTGTTGCTGAAGCACAAAACAAGAGGTATATTGAAATGCTTACTACTGAAATTGGAGAGGAATCGTCAAGGATGATGCAAACTGTTACTACTATGCCAATCAGACCAAATGAGCATAATATGGAGAAATAA
Protein sequence

>MsG0680032152.01.T01

MTGTNMLHTEEGPGPKKSSMVRPSSYGSSSTFRSWQPSWKSIDLGKQEASSSGVKATPQDKKTNNISVPKSNLGHADKNHISGGSASACVGVGDQATQKLDPKRLKRILANRISAQKSRLKKLDYIADLERMEKYLQAELSFLRPQVEVYKNQQWLLTMEHHQLRLEIAVREKERILQEVEIENKRAEVNRLRELQKKLVAEAQNKRYIEMLTTEIGEESSRMMQTVTTMPIRPNEHNMEK*