Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032449.01.T01 | XP_013452015.1 | 69.452 | 347 | 56 | 4 | 1 | 317 | 1 | 327 | 3.71E-161 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032449.01.T01 | Q94BZ5 | 53.846 | 234 | 106 | 2 | 1 | 232 | 1 | 234 | 7.65E-81 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032449.01.T01 | A0A072UAD0 | 69.452 | 347 | 56 | 4 | 1 | 317 | 1 | 327 | 1.77e-161 | 462 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0680032449.01.T01 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032449.01.T01 | MTR_6g043060 | 69.452 | 347 | 56 | 4 | 1 | 317 | 1 | 327 | 4.50e-165 | 462 |
| MsG0680032449.01.T01 | MTR_8g083100 | 75.347 | 288 | 38 | 5 | 23 | 277 | 23 | 310 | 2.86e-144 | 416 |
| MsG0680032449.01.T01 | MTR_8g083100 | 74.603 | 63 | 16 | 0 | 257 | 319 | 395 | 457 | 5.38e-22 | 96.3 |
| MsG0680032449.01.T01 | MTR_6g044340 | 63.433 | 268 | 70 | 2 | 68 | 319 | 8 | 263 | 1.88e-110 | 322 |
| MsG0680032449.01.T01 | MTR_2g100680 | 56.090 | 312 | 101 | 5 | 1 | 278 | 12 | 321 | 9.02e-110 | 327 |
| MsG0680032449.01.T01 | MTR_2g100670 | 56.522 | 276 | 102 | 5 | 1 | 261 | 14 | 286 | 4.11e-95 | 284 |
| MsG0680032449.01.T01 | MTR_2g100670 | 56.522 | 276 | 102 | 5 | 1 | 261 | 122 | 394 | 3.15e-93 | 283 |
| MsG0680032449.01.T01 | MTR_5g029680 | 50.237 | 211 | 91 | 4 | 22 | 218 | 32 | 242 | 8.21e-63 | 207 |
| MsG0680032449.01.T01 | MTR_8g087540 | 38.177 | 351 | 167 | 7 | 15 | 315 | 5 | 355 | 1.12e-62 | 204 |
| MsG0680032449.01.T01 | MTR_6g044430 | 50.988 | 253 | 46 | 5 | 100 | 315 | 14 | 225 | 1.15e-61 | 196 |
| MsG0680032449.01.T01 | MTR_6g044440 | 60.894 | 179 | 37 | 2 | 174 | 319 | 1 | 179 | 8.19e-61 | 192 |
| MsG0680032449.01.T01 | MTR_4g077970 | 44.019 | 209 | 105 | 3 | 20 | 216 | 10 | 218 | 5.28e-53 | 181 |
| MsG0680032449.01.T01 | MTR_3g104550 | 34.967 | 306 | 185 | 6 | 19 | 317 | 43 | 341 | 4.14e-51 | 173 |
| MsG0680032449.01.T01 | MTR_1g102860 | 43.243 | 222 | 109 | 6 | 7 | 214 | 20 | 238 | 1.69e-50 | 171 |
| MsG0680032449.01.T01 | MTR_7g095680 | 45.631 | 206 | 102 | 4 | 19 | 214 | 46 | 251 | 3.07e-50 | 171 |
| MsG0680032449.01.T01 | MTR_6g044350 | 60.403 | 149 | 39 | 3 | 174 | 305 | 1 | 146 | 2.47e-46 | 154 |
| MsG0680032449.01.T01 | MTR_1g071360 | 44.571 | 175 | 89 | 2 | 22 | 195 | 32 | 199 | 3.38e-46 | 159 |
| MsG0680032449.01.T01 | MTR_1g071360 | 44.571 | 175 | 89 | 2 | 22 | 195 | 29 | 196 | 5.40e-46 | 160 |
| MsG0680032449.01.T01 | MTR_1g061170 | 40.404 | 198 | 115 | 2 | 20 | 214 | 47 | 244 | 1.08e-45 | 161 |
| MsG0680032449.01.T01 | MTR_8g105780 | 48.718 | 195 | 87 | 6 | 20 | 201 | 20 | 214 | 3.83e-45 | 157 |
| MsG0680032449.01.T01 | MTR_3g101870 | 66.667 | 102 | 34 | 0 | 12 | 113 | 14 | 115 | 2.61e-44 | 155 |
| MsG0680032449.01.T01 | MTR_5g017470 | 62.264 | 106 | 40 | 0 | 17 | 122 | 4 | 109 | 3.66e-43 | 150 |
| MsG0680032449.01.T01 | MTR_6g086805 | 39.720 | 214 | 102 | 2 | 20 | 219 | 9 | 209 | 7.10e-42 | 148 |
| MsG0680032449.01.T01 | MTR_5g089170 | 68.817 | 93 | 29 | 0 | 21 | 113 | 24 | 116 | 2.79e-41 | 144 |
| MsG0680032449.01.T01 | MTR_5g010680 | 59.259 | 108 | 44 | 0 | 6 | 113 | 8 | 115 | 4.66e-41 | 146 |
| MsG0680032449.01.T01 | MTR_2g017890 | 58.333 | 108 | 45 | 0 | 12 | 119 | 5 | 112 | 3.17e-40 | 145 |
| MsG0680032449.01.T01 | MTR_7g091370 | 59.140 | 93 | 38 | 0 | 21 | 113 | 21 | 113 | 6.75e-38 | 135 |
| MsG0680032449.01.T01 | MTR_0020s0020 | 62.366 | 93 | 35 | 0 | 21 | 113 | 32 | 124 | 1.13e-37 | 137 |
| MsG0680032449.01.T01 | MTR_1g100777 | 60.000 | 95 | 38 | 0 | 21 | 115 | 17 | 111 | 5.59e-37 | 134 |
| MsG0680032449.01.T01 | MTR_4g088900 | 58.763 | 97 | 36 | 1 | 21 | 113 | 32 | 128 | 1.11e-34 | 125 |
| MsG0680032449.01.T01 | MTR_6g044510 | 77.632 | 76 | 15 | 1 | 246 | 319 | 13 | 88 | 5.51e-32 | 115 |
| MsG0680032449.01.T01 | MTR_5g047190 | 45.361 | 97 | 46 | 2 | 30 | 119 | 1 | 97 | 1.30e-21 | 87.8 |
| MsG0680032449.01.T01 | MTR_4g045757 | 67.241 | 58 | 19 | 0 | 22 | 79 | 14 | 71 | 9.34e-21 | 85.1 |
| MsG0680032449.01.T01 | MTR_6g044500 | 52.941 | 68 | 21 | 1 | 205 | 261 | 1 | 68 | 6.64e-13 | 63.9 |
| MsG0680032449.01.T01 | MTR_1g061170 | 29.936 | 157 | 99 | 4 | 61 | 214 | 1 | 149 | 1.38e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032449.01.T01 | AT4G13980 | 53.846 | 234 | 106 | 2 | 1 | 232 | 1 | 234 | 7.80e-82 | 255 |
| MsG0680032449.01.T01 | AT1G32330 | 49.765 | 213 | 92 | 4 | 1 | 198 | 16 | 228 | 1.23e-58 | 196 |
| MsG0680032449.01.T01 | AT1G32330 | 49.765 | 213 | 92 | 4 | 1 | 198 | 16 | 228 | 1.33e-58 | 196 |
| MsG0680032449.01.T01 | AT4G17750 | 47.685 | 216 | 92 | 4 | 22 | 216 | 52 | 267 | 1.41e-57 | 193 |
| MsG0680032449.01.T01 | AT5G16820 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 6.98e-57 | 191 |
| MsG0680032449.01.T01 | AT5G16820 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 6.98e-57 | 191 |
| MsG0680032449.01.T01 | AT3G02990 | 42.918 | 233 | 120 | 4 | 8 | 228 | 9 | 240 | 1.25e-56 | 190 |
| MsG0680032449.01.T01 | AT5G45710 | 35.962 | 317 | 174 | 7 | 14 | 315 | 5 | 307 | 3.71e-53 | 178 |
| MsG0680032449.01.T01 | AT5G45710 | 35.962 | 317 | 174 | 7 | 14 | 315 | 5 | 307 | 3.71e-53 | 178 |
| MsG0680032449.01.T01 | AT4G18880 | 47.867 | 211 | 100 | 3 | 16 | 220 | 9 | 215 | 3.62e-51 | 174 |
| MsG0680032449.01.T01 | AT2G26150 | 42.793 | 222 | 119 | 4 | 19 | 232 | 41 | 262 | 2.75e-50 | 170 |
| MsG0680032449.01.T01 | AT2G26150 | 42.793 | 222 | 119 | 4 | 19 | 232 | 41 | 262 | 2.75e-50 | 170 |
| MsG0680032449.01.T01 | AT3G51910 | 43.128 | 211 | 103 | 5 | 22 | 226 | 29 | 228 | 1.02e-49 | 167 |
| MsG0680032449.01.T01 | AT3G22830 | 41.905 | 210 | 108 | 4 | 19 | 214 | 58 | 267 | 3.70e-47 | 164 |
| MsG0680032449.01.T01 | AT3G24520 | 46.243 | 173 | 73 | 3 | 20 | 191 | 15 | 168 | 1.23e-45 | 158 |
| MsG0680032449.01.T01 | AT5G03720 | 41.584 | 202 | 110 | 3 | 20 | 213 | 53 | 254 | 2.32e-45 | 159 |
| MsG0680032449.01.T01 | AT5G03720 | 41.584 | 202 | 110 | 3 | 20 | 213 | 53 | 254 | 2.32e-45 | 159 |
| MsG0680032449.01.T01 | AT1G67970 | 45.128 | 195 | 94 | 5 | 20 | 204 | 17 | 208 | 3.08e-44 | 155 |
| MsG0680032449.01.T01 | AT1G46264 | 62.500 | 112 | 32 | 1 | 21 | 122 | 33 | 144 | 7.70e-44 | 154 |
| MsG0680032449.01.T01 | AT5G43840 | 42.246 | 187 | 96 | 3 | 21 | 205 | 18 | 194 | 1.86e-42 | 148 |
| MsG0680032449.01.T01 | AT5G54070 | 42.703 | 185 | 100 | 2 | 20 | 203 | 69 | 248 | 2.08e-40 | 144 |
| MsG0680032449.01.T01 | AT3G63350 | 34.762 | 210 | 136 | 1 | 19 | 227 | 25 | 234 | 2.22e-39 | 140 |
| MsG0680032449.01.T01 | AT4G11660 | 61.000 | 100 | 39 | 0 | 14 | 113 | 51 | 150 | 2.43e-38 | 140 |
| MsG0680032449.01.T01 | AT4G36990 | 57.407 | 108 | 44 | 1 | 8 | 115 | 2 | 107 | 9.99e-38 | 136 |
| MsG0680032449.01.T01 | AT5G62020 | 50.420 | 119 | 58 | 1 | 1 | 118 | 1 | 119 | 1.66e-37 | 135 |
| MsG0680032449.01.T01 | AT2G41690 | 51.304 | 115 | 56 | 0 | 22 | 136 | 40 | 154 | 5.70e-37 | 133 |
| MsG0680032449.01.T01 | AT4G18870 | 46.591 | 88 | 47 | 0 | 22 | 109 | 146 | 233 | 2.28e-22 | 95.1 |
| MsG0680032449.01.T01 | AT4G18870 | 45.833 | 96 | 51 | 1 | 14 | 109 | 5 | 99 | 3.86e-22 | 94.7 |
| MsG0680032449.01.T01 | AT1G77570 | 42.391 | 92 | 49 | 3 | 19 | 106 | 22 | 113 | 6.70e-17 | 76.6 |
| MsG0680032449.01.T01 | AT2G26150 | 32.000 | 200 | 121 | 6 | 43 | 232 | 13 | 207 | 1.29e-15 | 76.3 |
| MsG0680032449.01.T01 | AT2G26150 | 32.000 | 200 | 121 | 6 | 43 | 232 | 13 | 207 | 1.29e-15 | 76.3 |
| MsG0680032449.01.T01 | AT4G19630 | 34.021 | 97 | 61 | 1 | 19 | 112 | 8 | 104 | 8.39e-14 | 67.8 |
| MsG0680032449.01.T01 | AT5G45710 | 25.333 | 225 | 139 | 7 | 106 | 315 | 1 | 211 | 2.44e-11 | 63.5 |
| MsG0680032449.01.T01 | AT5G45710 | 25.333 | 225 | 139 | 7 | 106 | 315 | 1 | 211 | 2.44e-11 | 63.5 |
Find 74 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCAATGCTGCCCTTTC+TGG | -0.010683 | 6:+41521281 | None:intergenic |
| CTTCTTTGTGAAGGCTCTTC+AGG | 0.202681 | 6:-41521114 | MsG0680032449.01.T01:CDS |
| TGCAGGCTTTCCTCATCTTC+AGG | 0.204361 | 6:+41520930 | None:intergenic |
| ATAATTATAGCTTAAGAGTT+TGG | 0.284728 | 6:+41521217 | None:intergenic |
| GAAATTGCTGTGTTTGAAAT+AGG | 0.299469 | 6:+41522478 | None:intergenic |
| CCACAGATGAGATCGTTTCT+TGG | 0.319260 | 6:-41522565 | MsG0680032449.01.T01:CDS |
| CAAAATCAAATCCATGGATT+TGG | 0.330894 | 6:-41521063 | MsG0680032449.01.T01:CDS |
| CTTTCTGAAGGAGAACTTAC+TGG | 0.346936 | 6:-41520900 | MsG0680032449.01.T01:CDS |
| ACGGAGTGAATGATGTGTTT+TGG | 0.356521 | 6:-41520785 | MsG0680032449.01.T01:CDS |
| ATAACAAAAGCTTCATCGTT+TGG | 0.362747 | 6:-41522535 | MsG0680032449.01.T01:CDS |
| GCAGGCTTTCCTCATCTTCA+GGG | 0.373078 | 6:+41520931 | None:intergenic |
| AGAAGAACGCGAGAGAATTC+AGG | 0.373908 | 6:+41522506 | None:intergenic |
| ACGTTACCTGAAGCCTCCTT+TGG | 0.398346 | 6:+41520831 | None:intergenic |
| ACCAAGCTACCTTCGGCAAC+AGG | 0.417304 | 6:+41520993 | None:intergenic |
| AGCTTAAGAGTTTGGATTGA+AGG | 0.419735 | 6:+41521225 | None:intergenic |
| TAAGAAGAGGGGATTGTCTC+AGG | 0.434641 | 6:-41521030 | MsG0680032449.01.T01:CDS |
| TTCCCGCAAAATCAAATCCA+TGG | 0.455530 | 6:-41521069 | MsG0680032449.01.T01:CDS |
| GAGTTTATTTGAGATATCTT+CGG | 0.461136 | 6:+41520953 | None:intergenic |
| TGGAAACTTATAATAAGAAG+AGG | 0.463694 | 6:-41521043 | MsG0680032449.01.T01:CDS |
| TCTGCTTCCGTCGGCAGCAG+TGG | 0.466428 | 6:+41522640 | None:intergenic |
| GCTGATCCAAAGGAGGCTTC+AGG | 0.466668 | 6:-41520837 | MsG0680032449.01.T01:CDS |
| CCACAGTCATAGTCATCCTC+CGG | 0.469987 | 6:-41521318 | MsG0680032449.01.T01:CDS |
| GCCGAGCAGCTGCTTCGACT+TGG | 0.471786 | 6:+41520808 | None:intergenic |
| GGAAACTTATAATAAGAAGA+GGG | 0.473221 | 6:-41521042 | MsG0680032449.01.T01:CDS |
| AAAATCAGATCCTGATCGTT+GGG | 0.473476 | 6:-41521411 | MsG0680032449.01.T01:CDS |
| TTGGCAAACTCCCAACGATC+AGG | 0.478885 | 6:+41521401 | None:intergenic |
| TTGCTGTGTTTGAAATAGGC+TGG | 0.480359 | 6:+41522482 | None:intergenic |
| GCTTAAGAGTTTGGATTGAA+GGG | 0.480417 | 6:+41521226 | None:intergenic |
| ATTATAAGTTTCCAAATCCA+TGG | 0.481800 | 6:+41521052 | None:intergenic |
| AGATCCAGAAAGGGCAGCAT+TGG | 0.494908 | 6:-41521285 | MsG0680032449.01.T01:CDS |
| CGACGGAAGCAGAGAAGGTA+TGG | 0.499479 | 6:-41522630 | MsG0680032449.01.T01:CDS |
| TGAGACAGAAAAGCTTCAGC+TGG | 0.500611 | 6:-41521192 | MsG0680032449.01.T01:CDS |
| ATTGAGCTGACGGATGAAGC+TGG | 0.506271 | 6:+41522454 | None:intergenic |
| GCCTGTTGCCGAAGGTAGCT+TGG | 0.510527 | 6:-41520994 | MsG0680032449.01.T01:CDS |
| ATATCTTCGGCAACATTCCA+TGG | 0.514486 | 6:+41520966 | None:intergenic |
| TTTGCAGAACTTCTTTGTGA+AGG | 0.519196 | 6:-41521123 | MsG0680032449.01.T01:CDS |
| TTTCTGAAGGAGAACTTACT+GGG | 0.521375 | 6:-41520899 | MsG0680032449.01.T01:CDS |
| TGGATCAACCAAGCTACCTT+CGG | 0.537647 | 6:+41520986 | None:intergenic |
| AACAGCATGGACTTTCAGTA+AGG | 0.541453 | 6:+41520754 | None:intergenic |
| GAAAATCAGATCCTGATCGT+TGG | 0.543561 | 6:-41521412 | MsG0680032449.01.T01:CDS |
| GAAACTTATAATAAGAAGAG+GGG | 0.544462 | 6:-41521041 | MsG0680032449.01.T01:CDS |
| GTCGAAGCAGCTGCTCGGCA+CGG | 0.548207 | 6:-41520804 | MsG0680032449.01.T01:CDS |
| TCAGCGGCGATTGGAAGGCA+TGG | 0.549084 | 6:-41521162 | MsG0680032449.01.T01:CDS |
| TCCAAGTCGAAGCAGCTGCT+CGG | 0.549998 | 6:-41520809 | MsG0680032449.01.T01:CDS |
| CCGGAGGATGACTATGACTG+TGG | 0.551542 | 6:+41521318 | None:intergenic |
| CACAGTCATAGTCATCCTCC+GGG | 0.559092 | 6:-41521317 | MsG0680032449.01.T01:CDS |
| TTCTGCTGTAGATCCAGAAA+GGG | 0.565003 | 6:-41521294 | MsG0680032449.01.T01:CDS |
| TCATACGTCTTCAGAAGAAA+CGG | 0.565669 | 6:+41522605 | None:intergenic |
| GTTCTGCTGTAGATCCAGAA+AGG | 0.569845 | 6:-41521295 | MsG0680032449.01.T01:CDS |
| AAGGTAGCTTGGTTGATCCA+TGG | 0.570487 | 6:-41520983 | MsG0680032449.01.T01:CDS |
| GACTGTGGATAGGTTTCTTG+CGG | 0.574041 | 6:+41521333 | None:intergenic |
| TGCTGTGTTTGAAATAGGCT+GGG | 0.577118 | 6:+41522483 | None:intergenic |
| AAATAAACTCCCTGAAGATG+AGG | 0.580535 | 6:-41520940 | MsG0680032449.01.T01:CDS |
| GCTGCCGACGGAAGCAGAGA+AGG | 0.581055 | 6:-41522635 | MsG0680032449.01.T01:CDS |
| AGAAACGATCTCATCTGTGG+TGG | 0.582151 | 6:+41522568 | None:intergenic |
| GATTGGAAGGCATGGAGAAG+AGG | 0.593047 | 6:-41521154 | MsG0680032449.01.T01:CDS |
| CACATGCAGCCTGTTGCCGA+AGG | 0.596050 | 6:-41521002 | MsG0680032449.01.T01:CDS |
| TCTTCATTGTCTGAACAGCA+TGG | 0.597736 | 6:+41520741 | None:intergenic |
| TTACATAGGTATTGAGCTGA+CGG | 0.598207 | 6:+41522444 | None:intergenic |
| TCATCAGCCACTGCTGCCGA+CGG | 0.606067 | 6:-41522647 | MsG0680032449.01.T01:CDS |
| TCTGGATCTACAGCAGAACC+CGG | 0.614712 | 6:+41521299 | None:intergenic |
| GGATGACTATGACTGTGGAT+AGG | 0.617132 | 6:+41521323 | None:intergenic |
| CATACCTTCTCTGCTTCCGT+CGG | 0.623107 | 6:+41522631 | None:intergenic |
| GAAACGATCTCATCTGTGGT+GGG | 0.626600 | 6:+41522569 | None:intergenic |
| AGAACGCGAGAGAATTCAGG+AGG | 0.628084 | 6:+41522509 | None:intergenic |
| CCAAGAAACGATCTCATCTG+TGG | 0.633047 | 6:+41522565 | None:intergenic |
| ATGCTGTTCAGACAATGAAG+AGG | 0.637659 | 6:-41520739 | MsG0680032449.01.T01:CDS |
| TATTAAGCTAGCTGATCCAA+AGG | 0.648739 | 6:-41520847 | MsG0680032449.01.T01:CDS |
| TCTTCTGAAGACGTATGACA+TGG | 0.660108 | 6:-41522600 | MsG0680032449.01.T01:CDS |
| GAACGCGAGAGAATTCAGGA+GGG | 0.662504 | 6:+41522510 | None:intergenic |
| TAAGCTAGCTGATCCAAAGG+AGG | 0.675297 | 6:-41520844 | MsG0680032449.01.T01:CDS |
| TTCTGAAGGAGAACTTACTG+GGG | 0.695684 | 6:-41520898 | MsG0680032449.01.T01:CDS |
| GCAGTGGCTGATGATGATTG+TGG | 0.706595 | 6:+41522656 | None:intergenic |
| GGATCTACAGCAGAACCCGG+AGG | 0.744225 | 6:+41521302 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTATAAATTTTTCAT+TGG | + | Chr6:41522014-41522033 | None:intergenic | 10.0% |
| !! | TTATCATATTTATATAGTTC+AGG | + | Chr6:41521632-41521651 | None:intergenic | 15.0% |
| !!! | ATGTATGTTTTAATTTGTTA+CGG | - | Chr6:41521926-41521945 | MsG0680032449.01.T01:intron | 15.0% |
| !! | ATAATTATAGCTTAAGAGTT+TGG | + | Chr6:41522179-41522198 | None:intergenic | 20.0% |
| !! | ATATTCTTGTAGAGATTTAA+TGG | - | Chr6:41521855-41521874 | MsG0680032449.01.T01:intron | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | - | Chr6:41521209-41521228 | MsG0680032449.01.T01:CDS | 20.0% |
| !! | TCTTTATTAAACAAAAACTC+AGG | + | Chr6:41521835-41521854 | None:intergenic | 20.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | - | Chr6:41521064-41521083 | MsG0680032449.01.T01:CDS | 20.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | - | Chr6:41521771-41521790 | MsG0680032449.01.T01:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | + | Chr6:41521588-41521607 | None:intergenic | 25.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | - | Chr6:41521186-41521205 | MsG0680032449.01.T01:CDS | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | + | Chr6:41522344-41522363 | None:intergenic | 25.0% |
| ! | GAAACTTATAATAAGAAGAG+GGG | - | Chr6:41522352-41522371 | MsG0680032449.01.T01:intron | 25.0% |
| ! | GCAGGATTAAAATAAAAATC+AGG | + | Chr6:41521661-41521680 | None:intergenic | 25.0% |
| ! | GGAAACTTATAATAAGAAGA+GGG | - | Chr6:41522351-41522370 | MsG0680032449.01.T01:intron | 25.0% |
| ! | TGATATCTAAGTCTTAGATA+GGG | - | Chr6:41521743-41521762 | MsG0680032449.01.T01:intron | 25.0% |
| ! | TGATTAGCAAGATAAGAATT+AGG | - | Chr6:41521169-41521188 | MsG0680032449.01.T01:CDS | 25.0% |
| ! | TGGAAACTTATAATAAGAAG+AGG | - | Chr6:41522350-41522369 | MsG0680032449.01.T01:intron | 25.0% |
| ! | TTCAGTATAATCATATGTGT+CGG | - | Chr6:41521374-41521393 | MsG0680032449.01.T01:CDS | 25.0% |
| ! | TTGATATCTAAGTCTTAGAT+AGG | - | Chr6:41521742-41521761 | MsG0680032449.01.T01:intron | 25.0% |
| !! | GAGTTTATTTGAGATATCTT+CGG | + | Chr6:41522443-41522462 | None:intergenic | 25.0% |
| !!! | TGAGATATTATAGTCTTGTA+TGG | - | Chr6:41521271-41521290 | MsG0680032449.01.T01:CDS | 25.0% |
| AATCGTTCAAATAGCTCTTA+TGG | - | Chr6:41521880-41521899 | MsG0680032449.01.T01:intron | 30.0% | |
| AGATCAAAAACATCTTCTGA+CGG | - | Chr6:41522030-41522049 | MsG0680032449.01.T01:intron | 30.0% | |
| ATAACAAAAGCTTCATCGTT+TGG | - | Chr6:41520858-41520877 | MsG0680032449.01.T01:CDS | 30.0% | |
| ATATAGTTCAGGAACTAAAC+CGG | + | Chr6:41521621-41521640 | None:intergenic | 30.0% | |
| CAAAATCAAATCCATGGATT+TGG | - | Chr6:41522330-41522349 | MsG0680032449.01.T01:intron | 30.0% | |
| CTTCATCGAATTTCAATTAG+TGG | - | Chr6:41521098-41521117 | MsG0680032449.01.T01:CDS | 30.0% | |
| TCTGAATATCACACTATTTC+CGG | - | Chr6:41521599-41521618 | MsG0680032449.01.T01:intron | 30.0% | |
| ! | GAAATTGCTGTGTTTGAAAT+AGG | + | Chr6:41520918-41520937 | None:intergenic | 30.0% |
| ! | TTTTACTAATGTGGCTAATG+AGG | - | Chr6:41522522-41522541 | MsG0680032449.01.T01:CDS | 30.0% |
| !! | AATCCATGGATTTGATTTTG+CGG | + | Chr6:41522330-41522349 | None:intergenic | 30.0% |
| !! | TTTACGTGTGCTTTTTATCA+GGG | - | Chr6:41521953-41521972 | MsG0680032449.01.T01:intron | 30.0% |
| AAAAAAATTGCTGCAGCATC+TGG | - | Chr6:41521525-41521544 | MsG0680032449.01.T01:intron | 35.0% | |
| AAAAACTCAGGAAGCAAATC+TGG | + | Chr6:41521823-41521842 | None:intergenic | 35.0% | |
| AAAATCAGATCCTGATCGTT+GGG | - | Chr6:41521982-41522001 | MsG0680032449.01.T01:intron | 35.0% | |
| AAATAAACTCCCTGAAGATG+AGG | - | Chr6:41522453-41522472 | MsG0680032449.01.T01:CDS | 35.0% | |
| AAATTAAGACCTACGAAGCA+AGG | + | Chr6:41521442-41521461 | None:intergenic | 35.0% | |
| AGCTTAAGAGTTTGGATTGA+AGG | + | Chr6:41522171-41522190 | None:intergenic | 35.0% | |
| CTGCAGAAAAATCTTTCTGA+AGG | - | Chr6:41522481-41522500 | MsG0680032449.01.T01:CDS | 35.0% | |
| GACATGAGAATGTTGAAAGA+TGG | - | Chr6:41521247-41521266 | MsG0680032449.01.T01:CDS | 35.0% | |
| GCTTAAGAGTTTGGATTGAA+GGG | + | Chr6:41522170-41522189 | None:intergenic | 35.0% | |
| TATTAAGCTAGCTGATCCAA+AGG | - | Chr6:41522546-41522565 | MsG0680032449.01.T01:CDS | 35.0% | |
| TCATACGTCTTCAGAAGAAA+CGG | + | Chr6:41520791-41520810 | None:intergenic | 35.0% | |
| TTTGCAGAACTTCTTTGTGA+AGG | - | Chr6:41522270-41522289 | MsG0680032449.01.T01:intron | 35.0% | |
| ! | CTTCAGAAAGATTTTTCTGC+AGG | + | Chr6:41522483-41522502 | None:intergenic | 35.0% |
| ! | GCTTCGTAGGTCTTAATTTT+CGG | - | Chr6:41521443-41521462 | MsG0680032449.01.T01:intron | 35.0% |
| ! | TAGCGTGAATTGACTTACAT+AGG | + | Chr6:41520966-41520985 | None:intergenic | 35.0% |
| ! | TTTCTGAAGGAGAACTTACT+GGG | - | Chr6:41522494-41522513 | MsG0680032449.01.T01:CDS | 35.0% |
| !! | ATCCATGGATTTGATTTTGC+GGG | + | Chr6:41522329-41522348 | None:intergenic | 35.0% |
| !! | GTTTACGTGTGCTTTTTATC+AGG | - | Chr6:41521952-41521971 | MsG0680032449.01.T01:intron | 35.0% |
| !! | TAGGTCTTAATTTTCGGTGT+GGG | - | Chr6:41521449-41521468 | MsG0680032449.01.T01:intron | 35.0% |
| !! | TTACATAGGTATTGAGCTGA+CGG | + | Chr6:41520952-41520971 | None:intergenic | 35.0% |
| AACAGCATGGACTTTCAGTA+AGG | + | Chr6:41522642-41522661 | None:intergenic | 40.0% | |
| ATATCTTCGGCAACATTCCA+TGG | + | Chr6:41522430-41522449 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | - | Chr6:41522654-41522673 | MsG0680032449.01.T01:CDS | 40.0% | |
| GAAAATCAGATCCTGATCGT+TGG | - | Chr6:41521981-41522000 | MsG0680032449.01.T01:intron | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | + | Chr6:41522655-41522674 | None:intergenic | 40.0% | |
| TTCCCGCAAAATCAAATCCA+TGG | - | Chr6:41522324-41522343 | MsG0680032449.01.T01:intron | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | - | Chr6:41522099-41522118 | MsG0680032449.01.T01:intron | 40.0% | |
| ! | ACGGAGTGAATGATGTGTTT+TGG | - | Chr6:41522608-41522627 | MsG0680032449.01.T01:CDS | 40.0% |
| ! | CGGAGTGAATGATGTGTTTT+GGG | - | Chr6:41522609-41522628 | MsG0680032449.01.T01:CDS | 40.0% |
| ! | CTTTCTGAAGGAGAACTTAC+TGG | - | Chr6:41522493-41522512 | MsG0680032449.01.T01:CDS | 40.0% |
| ! | GTAGGTCTTAATTTTCGGTG+TGG | - | Chr6:41521448-41521467 | MsG0680032449.01.T01:intron | 40.0% |
| ! | TCTTCTGAAGACGTATGACA+TGG | - | Chr6:41520793-41520812 | MsG0680032449.01.T01:CDS | 40.0% |
| ! | TGCTGTGTTTGAAATAGGCT+GGG | + | Chr6:41520913-41520932 | None:intergenic | 40.0% |
| ! | TGTGAATTGGTGGGTGATTT+AGG | - | Chr6:41521474-41521493 | MsG0680032449.01.T01:intron | 40.0% |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | - | Chr6:41522215-41522234 | MsG0680032449.01.T01:intron | 40.0% |
| ! | TTCTGAAGGAGAACTTACTG+GGG | - | Chr6:41522495-41522514 | MsG0680032449.01.T01:CDS | 40.0% |
| ! | TTGCTGTGTTTGAAATAGGC+TGG | + | Chr6:41520914-41520933 | None:intergenic | 40.0% |
| !! | CATCTGGATCTTGGTAATGA+TGG | - | Chr6:41521541-41521560 | MsG0680032449.01.T01:intron | 40.0% |
| !! | TGGGGCATCTTTTACTAATG+TGG | - | Chr6:41522513-41522532 | MsG0680032449.01.T01:CDS | 40.0% |
| AACTCAGGAAGCAAATCTGG+CGG | + | Chr6:41521820-41521839 | None:intergenic | 45.0% | |
| AAGGTAGCTTGGTTGATCCA+TGG | - | Chr6:41522410-41522429 | MsG0680032449.01.T01:intron | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | + | Chr6:41520828-41520847 | None:intergenic | 45.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | + | Chr6:41520890-41520909 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | + | Chr6:41520831-41520850 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | - | Chr6:41520828-41520847 | MsG0680032449.01.T01:CDS | 45.0% | |
| CGTAGACATCTCAAGCATCT+AGG | - | Chr6:41521694-41521713 | MsG0680032449.01.T01:intron | 45.0% | |
| CTTCTTTGTGAAGGCTCTTC+AGG | - | Chr6:41522279-41522298 | MsG0680032449.01.T01:intron | 45.0% | |
| GAAACGATCTCATCTGTGGT+GGG | + | Chr6:41520827-41520846 | None:intergenic | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | + | Chr6:41522063-41522082 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | + | Chr6:41522073-41522092 | None:intergenic | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | - | Chr6:41522098-41522117 | MsG0680032449.01.T01:intron | 45.0% | |
| TAAGAAGAGGGGATTGTCTC+AGG | - | Chr6:41522363-41522382 | MsG0680032449.01.T01:intron | 45.0% | |
| TAAGCTAGCTGATCCAAAGG+AGG | - | Chr6:41522549-41522568 | MsG0680032449.01.T01:CDS | 45.0% | |
| TGAGACAGAAAAGCTTCAGC+TGG | - | Chr6:41522201-41522220 | MsG0680032449.01.T01:intron | 45.0% | |
| TGGATCAACCAAGCTACCTT+CGG | + | Chr6:41522410-41522429 | None:intergenic | 45.0% | |
| TTCGTTGTTTGTGTCGTGTC+TGG | + | Chr6:41521330-41521349 | None:intergenic | 45.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | + | Chr6:41522565-41522584 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | + | Chr6:41520887-41520906 | None:intergenic | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | - | Chr6:41522108-41522127 | MsG0680032449.01.T01:intron | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | - | Chr6:41522076-41522095 | MsG0680032449.01.T01:intron | 50.0% | |
| CATACCTTCTCTGCTTCCGT+CGG | + | Chr6:41520765-41520784 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | - | Chr6:41522075-41522094 | MsG0680032449.01.T01:intron | 50.0% | |
| CTACGATGCAGAAGAGAAGC+AGG | + | Chr6:41521679-41521698 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | + | Chr6:41520886-41520905 | None:intergenic | 50.0% | |
| GCAAGGACACTCCTCAGATT+AGG | + | Chr6:41521425-41521444 | None:intergenic | 50.0% | |
| GCAGGCTTTCCTCATCTTCA+GGG | + | Chr6:41522465-41522484 | None:intergenic | 50.0% | |
| GTGTGGGTGTGTGAATTGGT+GGG | - | Chr6:41521465-41521484 | MsG0680032449.01.T01:intron | 50.0% | |
| TCCTCAGATTAGGTGTGTCC+TGG | + | Chr6:41521415-41521434 | None:intergenic | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | + | Chr6:41522097-41522116 | None:intergenic | 50.0% | |
| TGCAGGCTTTCCTCATCTTC+AGG | + | Chr6:41522466-41522485 | None:intergenic | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | + | Chr6:41522115-41522134 | None:intergenic | 50.0% | |
| TTGCTGCAGCATCTGGATCT+TGG | - | Chr6:41521532-41521551 | MsG0680032449.01.T01:intron | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | + | Chr6:41521995-41522014 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | + | Chr6:41520942-41520961 | None:intergenic | 50.0% |
| ! | GATTGGAAGGCATGGAGAAG+AGG | - | Chr6:41522239-41522258 | MsG0680032449.01.T01:intron | 50.0% |
| ! | GATTTTCAGCGGCGATTGGA+AGG | - | Chr6:41522226-41522245 | MsG0680032449.01.T01:intron | 50.0% |
| ! | GCAGTGGCTGATGATGATTG+TGG | + | Chr6:41520740-41520759 | None:intergenic | 50.0% |
| ! | GGAAGATTTTCAGCGGCGAT+TGG | - | Chr6:41522222-41522241 | MsG0680032449.01.T01:intron | 50.0% |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | - | Chr6:41521461-41521480 | MsG0680032449.01.T01:intron | 50.0% |
| ACCAAGCTACCTTCGGCAAC+AGG | + | Chr6:41522403-41522422 | None:intergenic | 55.0% | |
| AGGAAGCAAATCTGGCGGTG+GGG | + | Chr6:41521815-41521834 | None:intergenic | 55.0% | |
| CAGGAAGCAAATCTGGCGGT+GGG | + | Chr6:41521816-41521835 | None:intergenic | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | + | Chr6:41522078-41522097 | None:intergenic | 55.0% | |
| CGACGGAAGCAGAGAAGGTA+TGG | - | Chr6:41520763-41520782 | MsG0680032449.01.T01:CDS | 55.0% | |
| GATTAGGTGTGTCCTGGCGT+CGG | + | Chr6:41521409-41521428 | None:intergenic | 55.0% | |
| GCCAGGACACACCTAATCTG+AGG | - | Chr6:41521411-41521430 | MsG0680032449.01.T01:CDS | 55.0% | |
| GCTGATCCAAAGGAGGCTTC+AGG | - | Chr6:41522556-41522575 | MsG0680032449.01.T01:CDS | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | - | Chr6:41521464-41521483 | MsG0680032449.01.T01:intron | 55.0% | |
| TCAGGAAGCAAATCTGGCGG+TGG | + | Chr6:41521817-41521836 | None:intergenic | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | - | Chr6:41522584-41522603 | MsG0680032449.01.T01:CDS | 55.0% | |
| !! | GAGGAGTGTCCTTGCTTCGT+AGG | - | Chr6:41521430-41521449 | MsG0680032449.01.T01:intron | 55.0% |
| CACATGCAGCCTGTTGCCGA+AGG | - | Chr6:41522391-41522410 | MsG0680032449.01.T01:intron | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | - | Chr6:41522399-41522418 | MsG0680032449.01.T01:intron | 60.0% | |
| GGATCTACAGCAGAACCCGG+AGG | + | Chr6:41522094-41522113 | None:intergenic | 60.0% | |
| TCAGCGGCGATTGGAAGGCA+TGG | - | Chr6:41522231-41522250 | MsG0680032449.01.T01:intron | 60.0% | |
| TCATCAGCCACTGCTGCCGA+CGG | - | Chr6:41520746-41520765 | MsG0680032449.01.T01:CDS | 60.0% | |
| GCCGAGCAGCTGCTTCGACT+TGG | + | Chr6:41522588-41522607 | None:intergenic | 65.0% | |
| GCTGCCGACGGAAGCAGAGA+AGG | - | Chr6:41520758-41520777 | MsG0680032449.01.T01:CDS | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | - | Chr6:41522589-41522608 | MsG0680032449.01.T01:CDS | 65.0% | |
| TCTGCTTCCGTCGGCAGCAG+TGG | + | Chr6:41520756-41520775 | None:intergenic | 65.0% | |
| ! | CGGTGTTAGACACCGACGCC+AGG | - | Chr6:41521394-41521413 | MsG0680032449.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 41520725 | 41522690 | 41520725 | ID=MsG0680032449.01;Name=MsG0680032449.01 |
| Chr6 | mRNA | 41520725 | 41522690 | 41520725 | ID=MsG0680032449.01.T01;Parent=MsG0680032449.01;Name=MsG0680032449.01.T01;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|319 |
| Chr6 | exon | 41522448 | 41522690 | 41522448 | ID=MsG0680032449.01.T01:exon:22456;Parent=MsG0680032449.01.T01 |
| Chr6 | exon | 41520725 | 41521441 | 41520725 | ID=MsG0680032449.01.T01:exon:22455;Parent=MsG0680032449.01.T01 |
| Chr6 | CDS | 41522448 | 41522690 | 41522448 | ID=MsG0680032449.01.T01:cds;Parent=MsG0680032449.01.T01 |
| Chr6 | CDS | 41520725 | 41521441 | 41520725 | ID=MsG0680032449.01.T01:cds;Parent=MsG0680032449.01.T01 |
| Gene Sequence |
| Protein sequence |
