AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032777.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032777.01.T01 MTR_6g022080 68.444 225 51 2 31 255 1 205 1.81e-97 285
MsG0680032777.01.T01 MTR_5g076070 56.934 137 59 0 118 254 36 172 5.91e-51 168
MsG0680032777.01.T01 MTR_6g053140 45.455 209 77 4 23 227 13 188 8.28e-51 166
MsG0680032777.01.T01 MTR_0604s0020 89.474 76 8 0 144 219 1 76 4.66e-43 141
MsG0680032777.01.T01 MTR_2g069720 48.052 154 40 2 29 182 27 140 4.87e-42 141
MsG0680032777.01.T01 MTR_7g037750 51.471 136 47 2 20 155 24 140 2.58e-39 134
MsG0680032777.01.T01 MTR_1g070355 40.113 177 103 1 79 255 21 194 2.96e-36 135
MsG0680032777.01.T01 MTR_2g101460 44.186 129 72 0 115 243 35 163 1.75e-31 115
MsG0680032777.01.T01 MTR_2g101460 44.186 129 72 0 115 243 25 153 7.03e-31 114
MsG0680032777.01.T01 MTR_3g448650 38.849 139 78 2 73 210 25 157 3.79e-28 106
MsG0680032777.01.T01 MTR_1g052260 42.727 110 63 0 108 217 49 158 1.47e-21 88.2
MsG0680032777.01.T01 MTR_8g066350 30.201 149 85 2 96 243 39 169 1.10e-18 81.3
MsG0680032777.01.T01 MTR_0060s0090 39.506 81 49 0 139 219 60 140 2.69e-14 68.9
MsG0680032777.01.T01 MTR_4g050510 31.343 134 75 2 120 253 66 182 5.37e-14 69.3
MsG0680032777.01.T01 MTR_7g028855 25.000 132 99 0 124 255 109 240 2.51e-12 66.6
MsG0680032777.01.T01 MTR_3g450850 35.043 117 66 4 147 254 59 174 3.23e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032777.01.T01 AT5G28530 34.234 111 70 2 147 255 67 176 1.80e-15 76.3
MsG0680032777.01.T01 AT5G28530 34.234 111 70 2 147 255 67 176 1.87e-15 75.9
MsG0680032777.01.T01 AT5G28530 34.234 111 70 2 147 255 67 176 1.88e-15 75.9
MsG0680032777.01.T01 AT5G28530 34.234 111 70 2 147 255 67 176 1.88e-15 75.9
MsG0680032777.01.T01 AT5G28530 34.234 111 70 2 147 255 67 176 1.88e-15 75.9

Find 52 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTAGACGATCCGGAAAA+TGG 0.297337 6:+49486731 None:intergenic
CAGTTTCAATGATGAATTTA+CGG 0.318487 6:-49486821 MsG0680032777.01.T01:CDS
CTTTGAGAAAATTAATTTCA+AGG 0.360382 6:-49486782 MsG0680032777.01.T01:CDS
TCGAATGTGAGCAACAAAAC+TGG 0.360815 6:-49487106 MsG0680032777.01.T01:CDS
ACTGACCGAATATCCACTAT+AGG 0.364680 6:-49489701 MsG0680032777.01.T01:CDS
AACTAGTAGGTGTGGGTGTA+TGG 0.373550 6:-49486536 MsG0680032777.01.T01:CDS
GGTTGTGTGCACGGATTTGC+TGG 0.387480 6:-49486685 MsG0680032777.01.T01:CDS
TCCTATTTGGTTTAGAGGAA+TGG 0.396488 6:-49489773 None:intergenic
CCTATTTGGTTTAGAGGAAT+GGG 0.403007 6:-49489772 None:intergenic
GACGCGTACAATTCGATGTA+TGG 0.424856 6:-49486847 MsG0680032777.01.T01:CDS
AATACCCTATAGTGGATATT+CGG 0.435093 6:+49489696 None:intergenic
CTTGGACAGTGGCTCTTGTT+CGG 0.455754 6:-49486905 MsG0680032777.01.T01:CDS
GAATGGGACTGCTACTCTTA+AGG 0.461523 6:-49489756 MsG0680032777.01.T01:CDS
ACATAGAAAGATGAGTGATT+AGG 0.466412 6:-49486401 None:intergenic
CGAATGTGAGCAACAAAACT+GGG 0.478717 6:-49487105 MsG0680032777.01.T01:CDS
ATGCATTAGGAACGTCGAAA+TGG 0.486741 6:-49487161 MsG0680032777.01.T01:intron
TCACTCATCTTTCTATGTGC+AGG 0.492964 6:+49486406 None:intergenic
GAATGTACAATACCCTATAG+TGG 0.499846 6:+49489688 None:intergenic
CTGACCGAATATCCACTATA+GGG 0.502961 6:-49489700 MsG0680032777.01.T01:intron
GCCTTTGTTTGTCATAGAGA+AGG 0.513837 6:-49486613 MsG0680032777.01.T01:CDS
GAGAGCACAAGCCAACTAGT+AGG 0.519908 6:-49486549 MsG0680032777.01.T01:CDS
TTGAATGCAACTAGACGATC+CGG 0.524208 6:+49486724 None:intergenic
TATATTGATGCTGATTATGA+CGG 0.527702 6:-49489731 MsG0680032777.01.T01:CDS
AATATGTACGGTTGTGTGCA+CGG 0.528502 6:-49486694 MsG0680032777.01.T01:CDS
GTGTTCCTCAGATGATGATA+TGG 0.530417 6:-49486872 MsG0680032777.01.T01:CDS
CACAAGCCAACTAGTAGGTG+TGG 0.542797 6:-49486544 MsG0680032777.01.T01:CDS
CATAGGTGTGGAAGGTTCAG+AGG 0.545355 6:-49487056 MsG0680032777.01.T01:intron
GAGAAGGTCACGGGGATGCA+AGG 0.560242 6:-49486597 MsG0680032777.01.T01:CDS
ACGCGTACAATTCGATGTAT+GGG 0.566673 6:-49486846 MsG0680032777.01.T01:CDS
ATACACCCACACCTACTAGT+TGG 0.569760 6:+49486538 None:intergenic
ACAACTGCGGAAGGCAACAT+AGG 0.571663 6:-49487073 MsG0680032777.01.T01:CDS
GAAGGCAACACAACTGCGGA+AGG 0.571872 6:-49487082 MsG0680032777.01.T01:CDS
ATTCTACATGACTTGGACAG+TGG 0.574737 6:-49486916 MsG0680032777.01.T01:CDS
GTTTGTCATAGAGAAGGTCA+CGG 0.583767 6:-49486607 MsG0680032777.01.T01:CDS
CGTGTTGTTAAGAACAAGGA+TGG 0.588169 6:-49486652 MsG0680032777.01.T01:CDS
ATGTTATATTCTACATGACT+TGG 0.589741 6:-49486923 MsG0680032777.01.T01:CDS
ATCCTTGTTCTTAACAACAC+GGG 0.590395 6:+49486654 None:intergenic
CATCCTTGTTCTTAACAACA+CGG 0.599878 6:+49486653 None:intergenic
ATTCTAGTACACGTTGACTA+CGG 0.607905 6:-49486508 MsG0680032777.01.T01:CDS
TTTGTCATAGAGAAGGTCAC+GGG 0.608402 6:-49486606 MsG0680032777.01.T01:CDS
GAAGGCAACATAGGTGTGGA+AGG 0.608992 6:-49487064 MsG0680032777.01.T01:CDS
GTGAGCAACAAAACTGGGGA+AGG 0.610958 6:-49487100 MsG0680032777.01.T01:CDS
AGTGGATATTCGGTCAGTAA+CGG 0.612821 6:+49489706 None:intergenic
ATCCCGTGTTGTTAAGAACA+AGG 0.615983 6:-49486656 MsG0680032777.01.T01:CDS
TGCGGAAGGCAACATAGGTG+TGG 0.624453 6:-49487068 MsG0680032777.01.T01:CDS
GTCTTCCATATCATCATCTG+AGG 0.638996 6:+49486867 None:intergenic
ACAAGCCAACTAGTAGGTGT+GGG 0.642158 6:-49486543 MsG0680032777.01.T01:CDS
ACCTTCTCTATGACAAACAA+AGG 0.649933 6:+49486612 None:intergenic
TTGACTACGGTAGTGACCTG+TGG 0.697395 6:-49486495 MsG0680032777.01.T01:CDS
TGGGGAAGGCAACACAACTG+CGG 0.699382 6:-49487086 MsG0680032777.01.T01:CDS
GAATGTGAGCAACAAAACTG+GGG 0.714038 6:-49487104 MsG0680032777.01.T01:CDS
TTGTCATAGAGAAGGTCACG+GGG 0.730327 6:-49486605 MsG0680032777.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGGAAAACATATTATAA+AGG - Chr6:49488117-49488136 MsG0680032777.01.T01:intron 15.0%
!! AACAAAAATACACAAATTTA+AGG - Chr6:49488041-49488060 MsG0680032777.01.T01:intron 15.0%
!! ACAAAAGAATTTAATTACTT+TGG + Chr6:49487315-49487334 None:intergenic 15.0%
!! TCAAAGTAAAATTTAACTAA+AGG + Chr6:49487248-49487267 None:intergenic 15.0%
!!! ATTATTTATTTATTTTCAGC+AGG + Chr6:49488097-49488116 None:intergenic 15.0%
!!! ATTGATTTTATTGTTTTTAC+TGG - Chr6:49488145-49488164 MsG0680032777.01.T01:intron 15.0%
!! ATTGAATTTATGTATGCATT+AGG - Chr6:49488986-49489005 MsG0680032777.01.T01:intron 20.0%
!! TACAAACATGATAATTACAA+TGG + Chr6:49487041-49487060 None:intergenic 20.0%
!! TGATATTGAACAATAATTGA+TGG + Chr6:49488388-49488407 None:intergenic 20.0%
!!! AGTGAAAATTTTACGTTAAT+GGG + Chr6:49488347-49488366 None:intergenic 20.0%
!!! CGATTTTAGATTTACTTTTA+TGG - Chr6:49488638-49488657 MsG0680032777.01.T01:intron 20.0%
!!! CTTTGAGAAAATTAATTTCA+AGG - Chr6:49489378-49489397 MsG0680032777.01.T01:intron 20.0%
!!! TATTCATAATCACACATTTT+TGG - Chr6:49489708-49489727 MsG0680032777.01.T01:CDS 20.0%
!!! TTCAAGTTTTACAATATGTA+CGG - Chr6:49489454-49489473 MsG0680032777.01.T01:intron 20.0%
! AAACTTATTCAATGAAGCTT+TGG + Chr6:49488897-49488916 None:intergenic 25.0%
! AAATACACAAATTTAAGGAC+AGG - Chr6:49488046-49488065 MsG0680032777.01.T01:intron 25.0%
! AATATTTATTTACCAGCTTG+AGG - Chr6:49486873-49486892 MsG0680032777.01.T01:CDS 25.0%
! ATGAACATATGCAATTTACA+AGG + Chr6:49487016-49487035 None:intergenic 25.0%
! ATGTTATATTCTACATGACT+TGG - Chr6:49489237-49489256 MsG0680032777.01.T01:intron 25.0%
! CACTTATCAGGAAATTTAAT+TGG - Chr6:49488851-49488870 MsG0680032777.01.T01:intron 25.0%
! CAGTTTCAATGATGAATTTA+CGG - Chr6:49489339-49489358 MsG0680032777.01.T01:intron 25.0%
! CTGGATTATTATCACAATAT+AGG + Chr6:49486659-49486678 None:intergenic 25.0%
! TACAGACAACGTTAATAAAA+CGG - Chr6:49487462-49487481 MsG0680032777.01.T01:intron 25.0%
! TATAGTAACATGACTAAAGA+AGG - Chr6:49487270-49487289 MsG0680032777.01.T01:intron 25.0%
! TGAACATATGCAATTTACAA+GGG + Chr6:49487015-49487034 None:intergenic 25.0%
! TTATAGGTGATGTGAAAAAT+AGG + Chr6:49487117-49487136 None:intergenic 25.0%
! TTCAATTAGACACAATCATT+TGG + Chr6:49488972-49488991 None:intergenic 25.0%
! TTCAATTTAACAACATACGT+CGG - Chr6:49487680-49487699 MsG0680032777.01.T01:intron 25.0%
!! AATTATGATGTACCATTTTC+CGG - Chr6:49489417-49489436 MsG0680032777.01.T01:intron 25.0%
!! ACAATAATTGATGGATAGAT+TGG + Chr6:49488379-49488398 None:intergenic 25.0%
!! CATATACGTTTGAAACTTAT+AGG + Chr6:49487133-49487152 None:intergenic 25.0%
!! GAGTGAAAATTTTACGTTAA+TGG + Chr6:49488348-49488367 None:intergenic 25.0%
!! TATATTGATGCTGATTATGA+CGG - Chr6:49486429-49486448 MsG0680032777.01.T01:CDS 25.0%
!! TCTGAAATCTTTAAACTTGA+AGG - Chr6:49488488-49488507 MsG0680032777.01.T01:intron 25.0%
!! TGGATACACATTTTATCAAA+GGG - Chr6:49486733-49486752 MsG0680032777.01.T01:CDS 25.0%
!!! AAAATTTTACGTTAATGGGT+AGG + Chr6:49488343-49488362 None:intergenic 25.0%
!!! ACTCTCAATGTTTAAGTTTT+GGG + Chr6:49488179-49488198 None:intergenic 25.0%
!!! GTATTTTTGTTATTTGTGCA+TGG + Chr6:49488032-49488051 None:intergenic 25.0%
!!! TACTCTCAATGTTTAAGTTT+TGG + Chr6:49488180-49488199 None:intergenic 25.0%
AAAGTTGTCATATGACTGAA+AGG + Chr6:49487621-49487640 None:intergenic 30.0%
AAGATATTTGCAAGTTGTGA+AGG + Chr6:49486795-49486814 None:intergenic 30.0%
AATCTTACTGGAATTGTAGT+TGG - Chr6:49488702-49488721 MsG0680032777.01.T01:intron 30.0%
ACACAATTCTCTCAATAACT+AGG + Chr6:49486836-49486855 None:intergenic 30.0%
ACGACAATAACTAAATCTGA+AGG - Chr6:49487723-49487742 MsG0680032777.01.T01:intron 30.0%
AGAAAAACATGAAAAGAGCA+AGG - Chr6:49487776-49487795 MsG0680032777.01.T01:intron 30.0%
AGCAAGAAGATTAAGTTCAA+TGG - Chr6:49486959-49486978 MsG0680032777.01.T01:intron 30.0%
ATAGAAAGATGAGTGATTAG+AGG - Chr6:49489761-49489780 MsG0680032777.01.T01:CDS 30.0%
GAAAAACATGAAAAGAGCAA+GGG - Chr6:49487777-49487796 MsG0680032777.01.T01:intron 30.0%
GCGATATTTGTGAATTACTT+TGG - Chr6:49486583-49486602 MsG0680032777.01.T01:CDS 30.0%
GGGAAACATATTTATGAGAT+AGG + Chr6:49487156-49487175 None:intergenic 30.0%
TCCAACTTAGACATGAAATT+CGG - Chr6:49487435-49487454 MsG0680032777.01.T01:intron 30.0%
TGAAGAAATGAAGAACATGA+AGG + Chr6:49488286-49488305 None:intergenic 30.0%
TGTAGATCTGAATTCATTGA+AGG - Chr6:49488453-49488472 MsG0680032777.01.T01:intron 30.0%
TTGGTAGATATGATGAAGTA+TGG - Chr6:49488522-49488541 MsG0680032777.01.T01:intron 30.0%
! AACTAGGAATCTTAGTTCTT+TGG + Chr6:49486820-49486839 None:intergenic 30.0%
! CAAACATTTTTATGTACCAC+AGG + Chr6:49489684-49489703 None:intergenic 30.0%
! CGAAAAGCATACGTTAATTA+CGG - Chr6:49489182-49489201 MsG0680032777.01.T01:intron 30.0%
! GAAATGCATTTTGAACAAGA+TGG - Chr6:49488576-49488595 MsG0680032777.01.T01:intron 30.0%
! GTGGATACACATTTTATCAA+AGG - Chr6:49486732-49486751 MsG0680032777.01.T01:CDS 30.0%
!! AATACCCTATAGTGGATATT+CGG + Chr6:49486467-49486486 None:intergenic 30.0%
!! AGGATTCTAGTTGATAGTTA+AGG - Chr6:49487377-49487396 MsG0680032777.01.T01:intron 30.0%
!! ATTTTTGGATGAGAAGTATG+AGG - Chr6:49489723-49489742 MsG0680032777.01.T01:CDS 30.0%
!! CTCTCAATGTTTAAGTTTTG+GGG + Chr6:49488178-49488197 None:intergenic 30.0%
!! TCAGTTCATTTTTCCATTGA+AGG - Chr6:49488405-49488424 MsG0680032777.01.T01:intron 30.0%
!! TCTCAATGTTTAAGTTTTGG+GGG + Chr6:49488177-49488196 None:intergenic 30.0%
!! TTCATTTTTCCATTGAAGGT+TGG - Chr6:49488409-49488428 MsG0680032777.01.T01:intron 30.0%
!! TTTAATTGGTTTGCACTGAA+TGG - Chr6:49488865-49488884 MsG0680032777.01.T01:intron 30.0%
!! TTTTTGGATGAGAAGTATGA+GGG - Chr6:49489724-49489743 MsG0680032777.01.T01:CDS 30.0%
!!! ATGGGTTGCTTTTGATAAAA+AGG + Chr6:49487937-49487956 None:intergenic 30.0%
AACCTTAGCTACTTACAAAG+TGG + Chr6:49486931-49486950 None:intergenic 35.0%
AATTGTGTTCAAGCTTGGAA+CGG - Chr6:49486848-49486867 MsG0680032777.01.T01:CDS 35.0%
ACCTTCTCTATGACAAACAA+AGG + Chr6:49489551-49489570 None:intergenic 35.0%
AGATGACTCTGCAAATGAAT+GGG + Chr6:49487955-49487974 None:intergenic 35.0%
ATCATTTGGATAGCCAAACA+CGG + Chr6:49488958-49488977 None:intergenic 35.0%
ATCCTTGTTCTTAACAACAC+GGG + Chr6:49489509-49489528 None:intergenic 35.0%
ATTTATTTACCAGCTTGAGG+AGG - Chr6:49486876-49486895 MsG0680032777.01.T01:CDS 35.0%
CATCCTTGTTCTTAACAACA+CGG + Chr6:49489510-49489529 None:intergenic 35.0%
CTATACACGTTCCTTGAAAT+GGG + Chr6:49487835-49487854 None:intergenic 35.0%
GAATGTACAATACCCTATAG+TGG + Chr6:49486475-49486494 None:intergenic 35.0%
GATTTGTAGATTGAGTGTGT+TGG - Chr6:49486624-49486643 MsG0680032777.01.T01:CDS 35.0%
TACACAAATTTAAGGACAGG+TGG - Chr6:49488049-49488068 MsG0680032777.01.T01:intron 35.0%
TATACACGTTCCTTGAAATG+GGG + Chr6:49487834-49487853 None:intergenic 35.0%
TCCGAATTTCATGTCTAAGT+TGG + Chr6:49487439-49487458 None:intergenic 35.0%
TGAAGAACATGAAGGAGAAA+AGG + Chr6:49488278-49488297 None:intergenic 35.0%
TGATTGAATGACACACATCA+AGG - Chr6:49486710-49486729 MsG0680032777.01.T01:CDS 35.0%
TGCTAAATGCAACCTATTAG+AGG + Chr6:49487986-49488005 None:intergenic 35.0%
TGTACAATACACCAAATGGT+GGG + Chr6:49487537-49487556 None:intergenic 35.0%
TTGGAGATTGCATCTTAGTT+TGG - Chr6:49488428-49488447 MsG0680032777.01.T01:intron 35.0%
TTGTGAGCTATACTAATTGC+TGG + Chr6:49486678-49486697 None:intergenic 35.0%
! ATTCTAGTACACGTTGACTA+CGG - Chr6:49489652-49489671 MsG0680032777.01.T01:intron 35.0%
! CTTGAAGGTATGTATAAGCT+TGG - Chr6:49488503-49488522 MsG0680032777.01.T01:intron 35.0%
! TACTTTTATGGAGTAACGCA+CGG - Chr6:49488650-49488669 MsG0680032777.01.T01:intron 35.0%
! TCTGAATTCATTGAAGGTGT+TGG - Chr6:49488459-49488478 MsG0680032777.01.T01:intron 35.0%
! TTGATAGTTAAGGCAAAGCA+AGG - Chr6:49487387-49487406 MsG0680032777.01.T01:intron 35.0%
! TTGATGGATAGATTGGTTGA+TGG + Chr6:49488372-49488391 None:intergenic 35.0%
!! ATAGGGTATTGTACATTCCT+CGG - Chr6:49486477-49486496 MsG0680032777.01.T01:CDS 35.0%
!! TTTTACGTTAATGGGTAGGT+TGG + Chr6:49488339-49488358 None:intergenic 35.0%
!! TTTTGGATGAGAAGTATGAG+GGG - Chr6:49489725-49489744 MsG0680032777.01.T01:CDS 35.0%
!!! CTCAATGTTTAAGTTTTGGG+GGG + Chr6:49488176-49488195 None:intergenic 35.0%
AACTAGAATCCTTGCTTTGC+AGG + Chr6:49487369-49487388 None:intergenic 40.0%
AAGGAGAAAAGGATGCAAGA+AGG + Chr6:49488267-49488286 None:intergenic 40.0%
AATATGTACGGTTGTGTGCA+CGG - Chr6:49489466-49489485 MsG0680032777.01.T01:intron 40.0%
ACGCGTACAATTCGATGTAT+GGG - Chr6:49489314-49489333 MsG0680032777.01.T01:intron 40.0%
ACTAGAATCCTTGCTTTGCA+GGG + Chr6:49487368-49487387 None:intergenic 40.0%
ACTGACCGAATATCCACTAT+AGG - Chr6:49486459-49486478 MsG0680032777.01.T01:CDS 40.0%
AGTGGATATTCGGTCAGTAA+CGG + Chr6:49486457-49486476 None:intergenic 40.0%
ATCTGTACAGTGCCTCTAAT+AGG - Chr6:49487971-49487990 MsG0680032777.01.T01:intron 40.0%
ATGCAATCTCCAACCTTCAA+TGG + Chr6:49488421-49488440 None:intergenic 40.0%
ATGCATTAGGAACGTCGAAA+TGG - Chr6:49488999-49489018 MsG0680032777.01.T01:intron 40.0%
ATGGTCGTGTGTAATCTTAC+TGG - Chr6:49488690-49488709 MsG0680032777.01.T01:intron 40.0%
CACTGGACCTAAACTCAATA+TGG - Chr6:49488783-49488802 MsG0680032777.01.T01:intron 40.0%
CAGATGACTCTGCAAATGAA+TGG + Chr6:49487956-49487975 None:intergenic 40.0%
CATACGTTAATTACGGTCGT+AGG - Chr6:49489189-49489208 MsG0680032777.01.T01:intron 40.0%
CCTCAACAACAACAGTAGAT+CGG + Chr6:49486548-49486567 None:intergenic 40.0%
CGAATGTGAGCAACAAAACT+GGG - Chr6:49489055-49489074 MsG0680032777.01.T01:intron 40.0%
CGTTAATAAAACGGCAAACC+TGG - Chr6:49487471-49487490 MsG0680032777.01.T01:intron 40.0%
CTAAAGCTCTCATATACGCA+AGG - Chr6:49487498-49487517 MsG0680032777.01.T01:intron 40.0%
CTCAACAACAACAGTAGATC+GGG + Chr6:49486547-49486566 None:intergenic 40.0%
CTCAAGAACAGCAACTTCAA+TGG + Chr6:49488605-49488624 None:intergenic 40.0%
CTCCACTTTGTAAGTAGCTA+AGG - Chr6:49486926-49486945 MsG0680032777.01.T01:CDS 40.0%
CTGACCGAATATCCACTATA+GGG - Chr6:49486460-49486479 MsG0680032777.01.T01:CDS 40.0%
GAATGTGAGCAACAAAACTG+GGG - Chr6:49489056-49489075 MsG0680032777.01.T01:intron 40.0%
GAGAGAATTGTGTTCAAGCT+TGG - Chr6:49486843-49486862 MsG0680032777.01.T01:CDS 40.0%
GCAAGTTGTGAAGGAACATA+AGG + Chr6:49486786-49486805 None:intergenic 40.0%
GCTATACACGTTCCTTGAAA+TGG + Chr6:49487836-49487855 None:intergenic 40.0%
GCTGTGTACAATACACCAAA+TGG + Chr6:49487541-49487560 None:intergenic 40.0%
GTCTTCCATATCATCATCTG+AGG + Chr6:49489296-49489315 None:intergenic 40.0%
GTGTACAATACACCAAATGG+TGG + Chr6:49487538-49487557 None:intergenic 40.0%
GTGTTCCTCAGATGATGATA+TGG - Chr6:49489288-49489307 MsG0680032777.01.T01:intron 40.0%
GTGTTGGAAACAAGTACGTA+AGG + Chr6:49487563-49487582 None:intergenic 40.0%
GTTTGTCATAGAGAAGGTCA+CGG - Chr6:49489553-49489572 MsG0680032777.01.T01:intron 40.0%
TATGACTGAAAGGTCACACA+CGG + Chr6:49487611-49487630 None:intergenic 40.0%
TCACTCATCTTTCTATGTGC+AGG + Chr6:49489757-49489776 None:intergenic 40.0%
TCGAATGTGAGCAACAAAAC+TGG - Chr6:49489054-49489073 MsG0680032777.01.T01:intron 40.0%
TGAGAGTAGTAATTCACCCT+TGG - Chr6:49488192-49488211 MsG0680032777.01.T01:intron 40.0%
TTCCAGGCCATATTGAGTTT+AGG + Chr6:49488793-49488812 None:intergenic 40.0%
TTGAATGACACACATCAAGG+TGG - Chr6:49486713-49486732 MsG0680032777.01.T01:CDS 40.0%
TTGAATGCAACTAGACGATC+CGG + Chr6:49489439-49489458 None:intergenic 40.0%
TTTGTCATAGAGAAGGTCAC+GGG - Chr6:49489554-49489573 MsG0680032777.01.T01:intron 40.0%
! ATCCCGTGTTGTTAAGAACA+AGG - Chr6:49489504-49489523 MsG0680032777.01.T01:intron 40.0%
! ATTCTACATGACTTGGACAG+TGG - Chr6:49489244-49489263 MsG0680032777.01.T01:intron 40.0%
! CGTGTTGTTAAGAACAAGGA+TGG - Chr6:49489508-49489527 MsG0680032777.01.T01:intron 40.0%
! GCCTTTGTTTGTCATAGAGA+AGG - Chr6:49489547-49489566 MsG0680032777.01.T01:intron 40.0%
! TGTTGTTGAGGTTCTAGCTA+TGG - Chr6:49486557-49486576 MsG0680032777.01.T01:CDS 40.0%
! TTGTGCTGATGTGTTACCAA+GGG + Chr6:49488211-49488230 None:intergenic 40.0%
!! TTAATGGGTAGGTTGGTTGA+TGG + Chr6:49488332-49488351 None:intergenic 40.0%
AACTAGTAGGTGTGGGTGTA+TGG - Chr6:49489624-49489643 MsG0680032777.01.T01:intron 45.0%
AAGTTACCAGATTTCCTCCG+AGG + Chr6:49486497-49486516 None:intergenic 45.0%
ACAAGCCAACTAGTAGGTGT+GGG - Chr6:49489617-49489636 MsG0680032777.01.T01:intron 45.0%
ACACTCAAGCAAGTGCACAA+TGG + Chr6:49487178-49487197 None:intergenic 45.0%
ACGGTCGTGTTACACTTATC+AGG - Chr6:49488839-49488858 MsG0680032777.01.T01:intron 45.0%
ACTCAAGCAAGTGCACAATG+GGG + Chr6:49487176-49487195 None:intergenic 45.0%
ATACACCCACACCTACTAGT+TGG + Chr6:49489625-49489644 None:intergenic 45.0%
ATGACTGAAAGGTCACACAC+GGG + Chr6:49487610-49487629 None:intergenic 45.0%
ATGGTCGTGTTCAATCTCAC+TGG - Chr6:49488766-49488785 MsG0680032777.01.T01:intron 45.0%
CAACACAAGAGACTGTTTCC+AGG - Chr6:49487577-49487596 MsG0680032777.01.T01:intron 45.0%
CAACTAGACGATCCGGAAAA+TGG + Chr6:49489432-49489451 None:intergenic 45.0%
CACTCAAGCAAGTGCACAAT+GGG + Chr6:49487177-49487196 None:intergenic 45.0%
CTGCAGTTAACCCCATTTCA+AGG - Chr6:49487821-49487840 MsG0680032777.01.T01:intron 45.0%
CTGGAAACAGTCTCTTGTGT+TGG + Chr6:49487579-49487598 None:intergenic 45.0%
GAATGGGACTGCTACTCTTA+AGG - Chr6:49486404-49486423 MsG0680032777.01.T01:CDS 45.0%
GACCATGCCAAAAAACCACA+CGG + Chr6:49488752-49488771 None:intergenic 45.0%
GACCGTGCGTTATATTGACA+CGG - Chr6:49488820-49488839 MsG0680032777.01.T01:intron 45.0%
GACCGTGTCAATATAACGCA+CGG + Chr6:49488825-49488844 None:intergenic 45.0%
GACCTAAACTCAATATGGCC+TGG - Chr6:49488788-49488807 MsG0680032777.01.T01:intron 45.0%
GACGCGTACAATTCGATGTA+TGG - Chr6:49489313-49489332 MsG0680032777.01.T01:intron 45.0%
TACATTCCTCGGAGGAAATC+TGG - Chr6:49486488-49486507 MsG0680032777.01.T01:CDS 45.0%
TCGGAGGAAATCTGGTAACT+TGG - Chr6:49486496-49486515 MsG0680032777.01.T01:CDS 45.0%
TTGTCATAGAGAAGGTCACG+GGG - Chr6:49489555-49489574 MsG0680032777.01.T01:intron 45.0%
! CCGATCTACTGTTGTTGTTG+AGG - Chr6:49486545-49486564 MsG0680032777.01.T01:CDS 45.0%
! GTTGTGCTGATGTGTTACCA+AGG + Chr6:49488212-49488231 None:intergenic 45.0%
! TATGAGAGCTTTAGTGCACC+AGG + Chr6:49487492-49487511 None:intergenic 45.0%
! TTAAGGACAGGTGGCAGTTT+TGG - Chr6:49488058-49488077 MsG0680032777.01.T01:intron 45.0%
!! GAAAATAAATAAATAATAAA+AGG - Chr6:49488100-49488119 MsG0680032777.01.T01:intron 5.0%
ACAACTGCGGAAGGCAACAT+AGG - Chr6:49489087-49489106 MsG0680032777.01.T01:intron 50.0%
ACACGGCAGGAAAACAAGGT+TGG + Chr6:49488941-49488960 None:intergenic 50.0%
ATATACGCAAGGTCCGGGAA+AGG - Chr6:49487509-49487528 MsG0680032777.01.T01:intron 50.0%
CACAAGCCAACTAGTAGGTG+TGG - Chr6:49489616-49489635 MsG0680032777.01.T01:intron 50.0%
CACGGCAGGAAAACAAGGTT+GGG + Chr6:49488940-49488959 None:intergenic 50.0%
CATAGGTGTGGAAGGTTCAG+AGG - Chr6:49489104-49489123 MsG0680032777.01.T01:intron 50.0%
CCAAACACGGCAGGAAAACA+AGG + Chr6:49488945-49488964 None:intergenic 50.0%
CTCTCATATACGCAAGGTCC+GGG - Chr6:49487504-49487523 MsG0680032777.01.T01:intron 50.0%
CTTGGACAGTGGCTCTTGTT+CGG - Chr6:49489255-49489274 MsG0680032777.01.T01:intron 50.0%
GAAACATACACACGACCGTG+TGG - Chr6:49488734-49488753 MsG0680032777.01.T01:intron 50.0%
GAAGGCAACATAGGTGTGGA+AGG - Chr6:49489096-49489115 MsG0680032777.01.T01:intron 50.0%
GCTCTCATATACGCAAGGTC+CGG - Chr6:49487503-49487522 MsG0680032777.01.T01:intron 50.0%
GTGAGCAACAAAACTGGGGA+AGG - Chr6:49489060-49489079 MsG0680032777.01.T01:intron 50.0%
TACAACACTCCTCCTCAAGC+TGG + Chr6:49486888-49486907 None:intergenic 50.0%
TATACGCAAGGTCCGGGAAA+GGG - Chr6:49487510-49487529 MsG0680032777.01.T01:intron 50.0%
TTGACTACGGTAGTGACCTG+TGG - Chr6:49489665-49489684 MsG0680032777.01.T01:intron 50.0%
TTTGGATAGCCAAACACGGC+AGG + Chr6:49488954-49488973 None:intergenic 50.0%
! GAGAGCACAAGCCAACTAGT+AGG - Chr6:49489611-49489630 MsG0680032777.01.T01:intron 50.0%
! GGGTATTGTACATTCCTCGG+AGG - Chr6:49486480-49486499 MsG0680032777.01.T01:CDS 50.0%
! GGTCGTGCGGATTAAACACA+TGG - Chr6:49488671-49488690 MsG0680032777.01.T01:intron 50.0%
!! CAACATACGTCGGTGTCAGT+AGG - Chr6:49487690-49487709 MsG0680032777.01.T01:intron 50.0%
!! GACAGGTGGCAGTTTTGGTA+GGG - Chr6:49488063-49488082 MsG0680032777.01.T01:intron 50.0%
!!! CACACGACCGTGTGGTTTTT+TGG - Chr6:49488742-49488761 MsG0680032777.01.T01:intron 50.0%
!!! CCTTGTTTTCCTGCCGTGTT+TGG - Chr6:49488942-49488961 MsG0680032777.01.T01:intron 50.0%
!!! GACCGTGTGGTTTTTTGGCA+TGG - Chr6:49488747-49488766 MsG0680032777.01.T01:intron 50.0%
AAGCGTAGCCCTGCAAAGCA+AGG - Chr6:49487357-49487376 MsG0680032777.01.T01:intron 55.0%
CTTTGCAGGGCTACGCTTCA+TGG + Chr6:49487355-49487374 None:intergenic 55.0%
GAAGGCAACACAACTGCGGA+AGG - Chr6:49489078-49489097 MsG0680032777.01.T01:intron 55.0%
GGGCTACGCTTCATGGTGTT+TGG + Chr6:49487348-49487367 None:intergenic 55.0%
GGTTGTGTGCACGGATTTGC+TGG - Chr6:49489475-49489494 MsG0680032777.01.T01:intron 55.0%
TCACACACGGGTTCAAGTCC+TGG + Chr6:49487598-49487617 None:intergenic 55.0%
TGCGGAAGGCAACATAGGTG+TGG - Chr6:49489092-49489111 MsG0680032777.01.T01:intron 55.0%
TGGGGAAGGCAACACAACTG+CGG - Chr6:49489074-49489093 MsG0680032777.01.T01:intron 55.0%
! CAAATGGTGGGACCCTTTCC+CGG + Chr6:49487525-49487544 None:intergenic 55.0%
!! GGACAGGTGGCAGTTTTGGT+AGG - Chr6:49488062-49488081 MsG0680032777.01.T01:intron 55.0%
!! GTGGCAGTTTTGGTAGGGTG+TGG - Chr6:49488068-49488087 MsG0680032777.01.T01:intron 55.0%
CGGGAAAGGGTCCCACCATT+TGG - Chr6:49487523-49487542 MsG0680032777.01.T01:intron 60.0%
GAGAAGGTCACGGGGATGCA+AGG - Chr6:49489563-49489582 MsG0680032777.01.T01:intron 60.0%
TGGAGTAACGCACGGTCGTG+CGG - Chr6:49488658-49488677 MsG0680032777.01.T01:intron 60.0%
CGCACGGTCGTGCGTGTTCC+AGG + Chr6:49488809-49488828 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 49486402 49489780 49486402 ID=MsG0680032777.01;Name=MsG0680032777.01
Chr6 mRNA 49486402 49489780 49486402 ID=MsG0680032777.01.T01;Parent=MsG0680032777.01;Name=MsG0680032777.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|0.5|0.33|3|0|255
Chr6 exon 49489701 49489780 49489701 ID=MsG0680032777.01.T01:exon:10812;Parent=MsG0680032777.01.T01
Chr6 exon 49487057 49487174 49487057 ID=MsG0680032777.01.T01:exon:10813;Parent=MsG0680032777.01.T01
Chr6 exon 49486402 49486971 49486402 ID=MsG0680032777.01.T01:exon:10814;Parent=MsG0680032777.01.T01
Chr6 CDS 49489701 49489780 49489701 ID=MsG0680032777.01.T01:cds;Parent=MsG0680032777.01.T01
Chr6 CDS 49487057 49487174 49487057 ID=MsG0680032777.01.T01:cds;Parent=MsG0680032777.01.T01
Chr6 CDS 49486402 49486971 49486402 ID=MsG0680032777.01.T01:cds;Parent=MsG0680032777.01.T01
Gene Sequence

>MsG0680032777.01.T01

AGGAATGGGACTGCTACTCTTAAGGCTTATATTGATGCTGATTATGACGGTTCCGTTACTGACCGAATATCCACTATAGGGAACGTCGAAATGGATATTAGTGAAATTCTTGAAATTTTTCAAGTTTCGAATGTGAGCAACAAAACTGGGGAAGGCAACACAACTGCGGAAGGCAACATAGGTGTGGAAGGTTCAGAGGTTTTGCAATTACTAAGTTATTTAGCATGTTATATTCTACATGACTTGGACAGTGGCTCTTGTTCGGAGAGTGTTGCGTGTTCCTCAGATGATGATATGGAAGACGCGTACAATTCGATGTATGGGTGCAGTTTCAATGATGAATTTACGGTTGATTGCACGACTGACTTTGAGAAAATTAATTTCAAGGAATTAAGCTCTGATGAAATTATGATGTACCATTTTCCGGATCGTCTAGTTGCATTCAAGTTTTACAATATGTACGGTTGTGTGCACGGATTTGCTGGTAGAAGATCCCGTGTTGTTAAGAACAAGGATGGCGAAGTTATTCAACAAGCCTTTGTTTGTCATAGAGAAGGTCACGGGGATGCAAGGAATGTCAATAATCATGAAAGAAAAAGAGAGCACAAGCCAACTAGTAGGTGTGGGTGTATGGCAAAAATTCTAGTACACGTTGACTACGGTAGTGACCTGTGGTACATAAAAATGTTTGACGATATTCATAATCACACATTTTTGGATGAGAAGTATGAGGGGATGCTACCTGCACATAGAAAGATGAGTGATTAG
Protein sequence

>MsG0680032777.01.T01

RNGTATLKAYIDADYDGSVTDRISTIGNVEMDISEILEIFQVSNVSNKTGEGNTTAEGNIGVEGSEVLQLLSYLACYILHDLDSGSCSESVACSSDDDMEDAYNSMYGCSFNDEFTVDCTTDFEKINFKELSSDEIMMYHFPDRLVAFKFYNMYGCVHGFAGRRSRVVKNKDGEVIQQAFVCHREGHGDARNVNNHERKREHKPTSRCGCMAKILVHVDYGSDLWYIKMFDDIHNHTFLDEKYEGMLPAHRKMSD*