Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032825.01.T01 | KEH26369.1 | 80 | 300 | 42 | 3 | 1 | 295 | 250 | 536 | 4.77E-165 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032825.01.T01 | Q9FLX8 | 45.918 | 98 | 46 | 3 | 59 | 151 | 144 | 239 | 1.41E-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032825.01.T01 | A0A072U999 | 80.000 | 300 | 42 | 3 | 1 | 295 | 250 | 536 | 2.28e-165 | 479 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0680032825.01.T01 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032825.01.T01 | MTR_6g053200 | 80.000 | 300 | 42 | 3 | 1 | 295 | 250 | 536 | 5.78e-169 | 479 |
| MsG0680032825.01.T01 | MTR_2g024380 | 42.173 | 313 | 131 | 5 | 3 | 295 | 188 | 470 | 4.20e-69 | 222 |
| MsG0680032825.01.T01 | MTR_2g024350 | 45.815 | 227 | 118 | 1 | 74 | 295 | 1 | 227 | 3.18e-64 | 202 |
| MsG0680032825.01.T01 | MTR_7g104980 | 50.754 | 199 | 97 | 1 | 97 | 295 | 18 | 215 | 7.70e-52 | 169 |
| MsG0680032825.01.T01 | MTR_8g067650 | 36.624 | 314 | 140 | 8 | 1 | 294 | 245 | 519 | 7.85e-48 | 167 |
| MsG0680032825.01.T01 | MTR_8g067635 | 38.333 | 300 | 132 | 7 | 1 | 280 | 255 | 521 | 1.53e-45 | 161 |
| MsG0680032825.01.T01 | MTR_8g069935 | 44.444 | 180 | 80 | 2 | 1 | 160 | 236 | 415 | 1.85e-38 | 141 |
| MsG0680032825.01.T01 | MTR_1g099600 | 39.062 | 128 | 62 | 4 | 32 | 154 | 146 | 262 | 2.77e-22 | 94.7 |
| MsG0680032825.01.T01 | MTR_7g079040 | 39.640 | 111 | 53 | 3 | 53 | 150 | 118 | 227 | 1.78e-17 | 81.6 |
| MsG0680032825.01.T01 | MTR_8g028565 | 40.179 | 112 | 50 | 4 | 44 | 150 | 129 | 228 | 3.04e-17 | 81.3 |
| MsG0680032825.01.T01 | MTR_7g109600 | 41.860 | 86 | 45 | 1 | 74 | 154 | 46 | 131 | 1.54e-15 | 75.1 |
| MsG0680032825.01.T01 | MTR_2g032030 | 44.156 | 77 | 37 | 2 | 82 | 153 | 268 | 343 | 1.13e-14 | 74.3 |
| MsG0680032825.01.T01 | MTR_2g032030 | 44.156 | 77 | 37 | 2 | 82 | 153 | 268 | 343 | 2.32e-14 | 73.6 |
| MsG0680032825.01.T01 | MTR_7g105000 | 36.364 | 132 | 62 | 4 | 1 | 113 | 228 | 356 | 2.03e-13 | 70.1 |
| MsG0680032825.01.T01 | MTR_8g098945 | 38.095 | 105 | 50 | 4 | 82 | 175 | 130 | 230 | 3.78e-13 | 68.6 |
| MsG0680032825.01.T01 | MTR_2g016770 | 39.535 | 86 | 45 | 2 | 76 | 154 | 22 | 107 | 2.66e-11 | 62.4 |
| MsG0680032825.01.T01 | MTR_2g016770 | 39.535 | 86 | 45 | 2 | 76 | 154 | 30 | 115 | 3.18e-11 | 62.4 |
| MsG0680032825.01.T01 | MTR_2g083870 | 46.032 | 63 | 29 | 1 | 82 | 139 | 81 | 143 | 6.99e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032825.01.T01 | AT5G52830 | 45.918 | 98 | 46 | 3 | 59 | 151 | 144 | 239 | 1.44e-19 | 87.8 |
| MsG0680032825.01.T01 | AT4G01250 | 32.903 | 155 | 91 | 4 | 25 | 169 | 74 | 225 | 2.04e-17 | 81.3 |
| MsG0680032825.01.T01 | AT4G23550 | 39.773 | 88 | 47 | 2 | 73 | 155 | 132 | 218 | 1.54e-14 | 73.2 |
| MsG0680032825.01.T01 | AT1G30650 | 33.333 | 150 | 91 | 2 | 35 | 179 | 175 | 320 | 6.70e-14 | 72.0 |
| MsG0680032825.01.T01 | AT2G34830 | 46.377 | 69 | 31 | 2 | 82 | 145 | 216 | 283 | 6.00e-13 | 68.9 |
| MsG0680032825.01.T01 | AT2G34830 | 46.377 | 69 | 31 | 2 | 82 | 145 | 225 | 292 | 6.65e-13 | 68.9 |
| MsG0680032825.01.T01 | AT5G45050 | 34.545 | 110 | 65 | 3 | 41 | 145 | 1141 | 1248 | 3.25e-12 | 67.4 |
| MsG0680032825.01.T01 | AT5G45050 | 34.545 | 110 | 65 | 3 | 41 | 145 | 1002 | 1109 | 3.31e-12 | 67.4 |
| MsG0680032825.01.T01 | AT5G45050 | 34.545 | 110 | 65 | 3 | 41 | 145 | 1113 | 1220 | 3.72e-12 | 67.4 |
| MsG0680032825.01.T01 | AT5G28650 | 35.870 | 92 | 51 | 2 | 52 | 135 | 230 | 321 | 7.94e-11 | 62.4 |
| MsG0680032825.01.T01 | AT3G04670 | 35.870 | 92 | 51 | 2 | 52 | 135 | 230 | 321 | 9.74e-11 | 62.0 |
Find 52 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCAGGAAACAAACTTAT+TGG | 0.153110 | 6:-50544053 | MsG0680032825.01.T01:CDS |
| ATAAGTTCAGTTTCTGAATA+AGG | 0.191932 | 6:+50544218 | None:intergenic |
| TGTGATTGATTGAGCTTTCT+TGG | 0.276762 | 6:+50545491 | None:intergenic |
| TGGTGGTCGTGGACAAAATA+TGG | 0.290490 | 6:-50545225 | MsG0680032825.01.T01:CDS |
| TAGTCTTTGATGACTTGTTC+TGG | 0.291346 | 6:+50544372 | None:intergenic |
| TTTCTCTAGCAGCAGGTAAA+TGG | 0.294770 | 6:+50544189 | None:intergenic |
| TATGTCAGAGGATTTCTTAT+TGG | 0.311118 | 6:-50543985 | MsG0680032825.01.T01:CDS |
| TAAGTTCAGTTTCTGAATAA+GGG | 0.317166 | 6:+50544219 | None:intergenic |
| AAGGGATTTCTGATTGACTA+TGG | 0.341055 | 6:+50544237 | None:intergenic |
| GTGATTGATTGAGCTTTCTT+GGG | 0.361329 | 6:+50545492 | None:intergenic |
| AGTCTTTGATGACTTGTTCT+GGG | 0.370924 | 6:+50544373 | None:intergenic |
| CAAACAAGCTTTCAGAAGAT+TGG | 0.373192 | 6:-50545245 | MsG0680032825.01.T01:CDS |
| GCAAAACATAATTCAAGAAT+CGG | 0.387484 | 6:-50545413 | MsG0680032825.01.T01:CDS |
| AATTAACAACAAGGTAACTT+TGG | 0.407679 | 6:-50545283 | MsG0680032825.01.T01:CDS |
| AATTACCCAACACCAGATCT+AGG | 0.412137 | 6:-50545463 | MsG0680032825.01.T01:CDS |
| GAACCCAGCTTTGAAATGTT+TGG | 0.416902 | 6:+50544317 | None:intergenic |
| GTGATTCACCGGAGTAATCA+TGG | 0.421109 | 6:+50544084 | None:intergenic |
| GAATCACAAATCCTTCCTTC+AGG | 0.431729 | 6:-50544068 | MsG0680032825.01.T01:CDS |
| CACAACAAAAGTGTCCTCTT+TGG | 0.441667 | 6:+50544460 | None:intergenic |
| AACACTTGACTGTTATTGTT+TGG | 0.445737 | 6:+50545554 | None:intergenic |
| GTCACCAAACATTTCAAAGC+TGG | 0.449524 | 6:-50544321 | MsG0680032825.01.T01:CDS |
| ACTTGAATATTCCTGCTCTC+TGG | 0.454557 | 6:+50544263 | None:intergenic |
| GCAGGTAAATGGAACTCTAT+TGG | 0.471063 | 6:-50544404 | MsG0680032825.01.T01:CDS |
| ATTTGGTAAAATCCTAGATC+TGG | 0.472878 | 6:+50545451 | None:intergenic |
| ATAGAGTTCCATTTACCTGC+TGG | 0.487185 | 6:+50544407 | None:intergenic |
| CAAAACATAATTCAAGAATC+GGG | 0.489328 | 6:-50545412 | MsG0680032825.01.T01:intron |
| TCATGGGCATTGCTACTCAT+TGG | 0.492500 | 6:+50544101 | None:intergenic |
| GATTCAATTTCTCTAGCAGC+AGG | 0.497334 | 6:+50544182 | None:intergenic |
| TAAGTTTGTTTCCTGAAGGA+AGG | 0.517251 | 6:+50544057 | None:intergenic |
| TCACCAAACATTTCAAAGCT+GGG | 0.518423 | 6:-50544320 | MsG0680032825.01.T01:CDS |
| AAAATCCTAGATCTGGTGTT+GGG | 0.521031 | 6:+50545458 | None:intergenic |
| AAGACTAGATTACCCGCTGT+TGG | 0.528458 | 6:-50544356 | MsG0680032825.01.T01:CDS |
| CCAATAAGTTTGTTTCCTGA+AGG | 0.534237 | 6:+50544053 | None:intergenic |
| AGGAAGGATTTGTGATTCAC+CGG | 0.548075 | 6:+50544073 | None:intergenic |
| GACTTGAAATTTCCAACAGC+GGG | 0.560025 | 6:+50544344 | None:intergenic |
| TCTGACATATCAGTCATGCT+TGG | 0.560481 | 6:+50543999 | None:intergenic |
| ACAAGCTTTCAGAAGATTGG+TGG | 0.561395 | 6:-50545242 | MsG0680032825.01.T01:CDS |
| TGATTCACCGGAGTAATCAT+GGG | 0.561593 | 6:+50544085 | None:intergenic |
| TGATTGATTGAGCTTTCTTG+GGG | 0.561989 | 6:+50545493 | None:intergenic |
| ATGTCGATCATCCAGAGAGC+AGG | 0.571282 | 6:-50544274 | MsG0680032825.01.T01:CDS |
| TTTCAGAAGATTGGTGGTCG+TGG | 0.572428 | 6:-50545236 | MsG0680032825.01.T01:CDS |
| TAAAATCCTAGATCTGGTGT+TGG | 0.574409 | 6:+50545457 | None:intergenic |
| AAAGCTTGTTTGTTCTCACA+TGG | 0.575398 | 6:+50545256 | None:intergenic |
| GGTAAATGGAACTCTATTGG+TGG | 0.596193 | 6:-50544401 | MsG0680032825.01.T01:CDS |
| CTTTGATGACTTGTTCTGGG+AGG | 0.611922 | 6:+50544376 | None:intergenic |
| GTAAATGGAACTCTATTGGT+GGG | 0.619020 | 6:-50544400 | MsG0680032825.01.T01:CDS |
| GAAATAGAAAACCATCATTG+AGG | 0.620026 | 6:+50543952 | None:intergenic |
| AGCAATGCCCATGATTACTC+CGG | 0.626209 | 6:-50544092 | MsG0680032825.01.T01:CDS |
| ATAGAAAACCATCATTGAGG+TGG | 0.645904 | 6:+50543955 | None:intergenic |
| AAGCATGACTGATATGTCAG+AGG | 0.660878 | 6:-50543997 | MsG0680032825.01.T01:CDS |
| CGACTTGAAATTTCCAACAG+CGG | 0.670165 | 6:+50544343 | None:intergenic |
| GATTGATTGAGCTTTCTTGG+GGG | 0.688353 | 6:+50545494 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCAAAATTAATGTATTTT+TGG | - | Chr6:50544637-50544656 | MsG0680032825.01.T01:intron | 10.0% |
| !! | AACAAGTAGAAAAAATAAAA+AGG | + | Chr6:50544745-50544764 | None:intergenic | 15.0% |
| !! | ACTAAAAATATCTATGTATT+TGG | + | Chr6:50544902-50544921 | None:intergenic | 15.0% |
| !! | AAGGATTAATATGAATATTC+AGG | + | Chr6:50544812-50544831 | None:intergenic | 20.0% |
| !! | TTACAGAAAAATTAACAACA+AGG | - | Chr6:50544230-50544249 | MsG0680032825.01.T01:CDS | 20.0% |
| !!! | TAACAATCAAAACTTTTACA+TGG | + | Chr6:50544698-50544717 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTTAAGTACAAAA+TGG | - | Chr6:50544653-50544672 | MsG0680032825.01.T01:intron | 20.0% |
| ! | AATGAGTGATATATTTGTTC+AGG | + | Chr6:50544838-50544857 | None:intergenic | 25.0% |
| ! | AATTAACAACAAGGTAACTT+TGG | - | Chr6:50544239-50544258 | MsG0680032825.01.T01:CDS | 25.0% |
| ! | ACAAATATATCACTCATTTC+AGG | - | Chr6:50544840-50544859 | MsG0680032825.01.T01:intron | 25.0% |
| ! | ATAAGTTCAGTTTCTGAATA+AGG | + | Chr6:50545307-50545326 | None:intergenic | 25.0% |
| ! | ATTTAAGTGATACGATTTAG+AGG | - | Chr6:50544936-50544955 | MsG0680032825.01.T01:intron | 25.0% |
| ! | CAAAACATAATTCAAGAATC+GGG | - | Chr6:50544110-50544129 | MsG0680032825.01.T01:CDS | 25.0% |
| ! | CAAATATATCACTCATTTCA+GGG | - | Chr6:50544841-50544860 | MsG0680032825.01.T01:intron | 25.0% |
| ! | GATATATTTGTTCAGGAATA+AGG | + | Chr6:50544831-50544850 | None:intergenic | 25.0% |
| ! | GCAAAACATAATTCAAGAAT+CGG | - | Chr6:50544109-50544128 | MsG0680032825.01.T01:CDS | 25.0% |
| ! | TAAGTTCAGTTTCTGAATAA+GGG | + | Chr6:50545306-50545325 | None:intergenic | 25.0% |
| ! | TAATACAAACATGATAGCTT+GGG | - | Chr6:50544428-50544447 | MsG0680032825.01.T01:CDS | 25.0% |
| ! | TATGGACAAAAAAACATTAG+CGG | - | Chr6:50544315-50544334 | MsG0680032825.01.T01:CDS | 25.0% |
| !! | CAATCTATGAATGATTTTTC+AGG | - | Chr6:50544975-50544994 | MsG0680032825.01.T01:intron | 25.0% |
| !! | GAAAACAAGTTTTCAACATT+AGG | + | Chr6:50545370-50545389 | None:intergenic | 25.0% |
| AACACTTGACTGTTATTGTT+TGG | + | Chr6:50543971-50543990 | None:intergenic | 30.0% | |
| ATGGACAAAAAAACATTAGC+GGG | - | Chr6:50544316-50544335 | MsG0680032825.01.T01:CDS | 30.0% | |
| ATTTGGTAAAATCCTAGATC+TGG | + | Chr6:50544074-50544093 | None:intergenic | 30.0% | |
| CTAATACAAACATGATAGCT+TGG | - | Chr6:50544427-50544446 | MsG0680032825.01.T01:CDS | 30.0% | |
| GAAATAGAAAACCATCATTG+AGG | + | Chr6:50545573-50545592 | None:intergenic | 30.0% | |
| TATGTCAGAGGATTTCTTAT+TGG | - | Chr6:50545537-50545556 | MsG0680032825.01.T01:CDS | 30.0% | |
| TTGAAACACAAACAAAACCT+AGG | + | Chr6:50544511-50544530 | None:intergenic | 30.0% | |
| TTTAGACCACAATTAGTCAA+TGG | + | Chr6:50544488-50544507 | None:intergenic | 30.0% | |
| ! | GCTTTTTGTGAATCTGAATT+TGG | + | Chr6:50544091-50544110 | None:intergenic | 30.0% |
| ! | TTTTGAATGTGAAAAGACCT+TGG | + | Chr6:50544351-50544370 | None:intergenic | 30.0% |
| !!! | ATAGCTTGGGTTTTAAATAG+TGG | - | Chr6:50544441-50544460 | MsG0680032825.01.T01:CDS | 30.0% |
| AAAATCCTAGATCTGGTGTT+GGG | + | Chr6:50544067-50544086 | None:intergenic | 35.0% | |
| AAGGGATTTCTGATTGACTA+TGG | + | Chr6:50545288-50545307 | None:intergenic | 35.0% | |
| ACAAAAAAGTGACACCAAAG+AGG | - | Chr6:50545048-50545067 | MsG0680032825.01.T01:intron | 35.0% | |
| ACTAATTGTGGTCTAAACCT+AGG | - | Chr6:50544491-50544510 | MsG0680032825.01.T01:CDS | 35.0% | |
| ATAGAAAACCATCATTGAGG+TGG | + | Chr6:50545570-50545589 | None:intergenic | 35.0% | |
| ATATATCACTCATTTCAGGG+AGG | - | Chr6:50544844-50544863 | MsG0680032825.01.T01:intron | 35.0% | |
| ATGAAAAACCAGCAGGTAAA+TGG | - | Chr6:50545107-50545126 | MsG0680032825.01.T01:intron | 35.0% | |
| CAAACAAGCTTTCAGAAGAT+TGG | - | Chr6:50544277-50544296 | MsG0680032825.01.T01:CDS | 35.0% | |
| CCTTCAGGAAACAAACTTAT+TGG | - | Chr6:50545469-50545488 | MsG0680032825.01.T01:CDS | 35.0% | |
| GTAAATGGAACTCTATTGGT+GGG | - | Chr6:50545122-50545141 | MsG0680032825.01.T01:intron | 35.0% | |
| GTGATTGATTGAGCTTTCTT+GGG | + | Chr6:50544033-50544052 | None:intergenic | 35.0% | |
| TAAAATCCTAGATCTGGTGT+TGG | + | Chr6:50544068-50544087 | None:intergenic | 35.0% | |
| TATATCACTCATTTCAGGGA+GGG | - | Chr6:50544845-50544864 | MsG0680032825.01.T01:intron | 35.0% | |
| TCACCAAACATTTCAAAGCT+GGG | - | Chr6:50545202-50545221 | MsG0680032825.01.T01:intron | 35.0% | |
| TGATTGATTGAGCTTTCTTG+GGG | + | Chr6:50544032-50544051 | None:intergenic | 35.0% | |
| TGTGATTGATTGAGCTTTCT+TGG | + | Chr6:50544034-50544053 | None:intergenic | 35.0% | |
| ! | AAAGCTTGTTTGTTCTCACA+TGG | + | Chr6:50544269-50544288 | None:intergenic | 35.0% |
| ! | CCAATAAGTTTGTTTCCTGA+AGG | + | Chr6:50545472-50545491 | None:intergenic | 35.0% |
| ! | TAAGTTTGTTTCCTGAAGGA+AGG | + | Chr6:50545468-50545487 | None:intergenic | 35.0% |
| !! | ACTTTTGTTGTGACGTTTGT+TGG | - | Chr6:50545073-50545092 | MsG0680032825.01.T01:intron | 35.0% |
| !! | AGTCTTTGATGACTTGTTCT+GGG | + | Chr6:50545152-50545171 | None:intergenic | 35.0% |
| !! | TAGTCTTTGATGACTTGTTC+TGG | + | Chr6:50545153-50545172 | None:intergenic | 35.0% |
| !!! | ATTTACCTGCTGGTTTTTCA+TGG | + | Chr6:50545108-50545127 | None:intergenic | 35.0% |
| AAGCATGACTGATATGTCAG+AGG | - | Chr6:50545525-50545544 | MsG0680032825.01.T01:CDS | 40.0% | |
| AATTACCCAACACCAGATCT+AGG | - | Chr6:50544059-50544078 | MsG0680032825.01.T01:CDS | 40.0% | |
| ACAAGCTTTCAGAAGATTGG+TGG | - | Chr6:50544280-50544299 | MsG0680032825.01.T01:CDS | 40.0% | |
| ACCACAATTAGTCAATGGCA+AGG | + | Chr6:50544483-50544502 | None:intergenic | 40.0% | |
| ACTTGAATATTCCTGCTCTC+TGG | + | Chr6:50545262-50545281 | None:intergenic | 40.0% | |
| AGGAAGGATTTGTGATTCAC+CGG | + | Chr6:50545452-50545471 | None:intergenic | 40.0% | |
| ATAGAGTTCCATTTACCTGC+TGG | + | Chr6:50545118-50545137 | None:intergenic | 40.0% | |
| ATGTGAAAAGACCTTGGATG+TGG | + | Chr6:50544345-50544364 | None:intergenic | 40.0% | |
| CAATTAGTCAATGGCAAGGA+TGG | + | Chr6:50544479-50544498 | None:intergenic | 40.0% | |
| CGACTTGAAATTTCCAACAG+CGG | + | Chr6:50545182-50545201 | None:intergenic | 40.0% | |
| GAATCACAAATCCTTCCTTC+AGG | - | Chr6:50545454-50545473 | MsG0680032825.01.T01:CDS | 40.0% | |
| GACTTGAAATTTCCAACAGC+GGG | + | Chr6:50545181-50545200 | None:intergenic | 40.0% | |
| GATTCAATTTCTCTAGCAGC+AGG | + | Chr6:50545343-50545362 | None:intergenic | 40.0% | |
| GATTGATTGAGCTTTCTTGG+GGG | + | Chr6:50544031-50544050 | None:intergenic | 40.0% | |
| GCAGGTAAATGGAACTCTAT+TGG | - | Chr6:50545118-50545137 | MsG0680032825.01.T01:intron | 40.0% | |
| GGTAAATGGAACTCTATTGG+TGG | - | Chr6:50545121-50545140 | MsG0680032825.01.T01:intron | 40.0% | |
| GTCACCAAACATTTCAAAGC+TGG | - | Chr6:50545201-50545220 | MsG0680032825.01.T01:intron | 40.0% | |
| TCTGACATATCAGTCATGCT+TGG | + | Chr6:50545526-50545545 | None:intergenic | 40.0% | |
| TGATTCACCGGAGTAATCAT+GGG | + | Chr6:50545440-50545459 | None:intergenic | 40.0% | |
| TGTGAAAAGACCTTGGATGT+GGG | + | Chr6:50544344-50544363 | None:intergenic | 40.0% | |
| TTTCTCTAGCAGCAGGTAAA+TGG | + | Chr6:50545336-50545355 | None:intergenic | 40.0% | |
| ! | TCCTTGCCATTGACTAATTG+TGG | - | Chr6:50544479-50544498 | MsG0680032825.01.T01:CDS | 40.0% |
| !! | CACAACAAAAGTGTCCTCTT+TGG | + | Chr6:50545065-50545084 | None:intergenic | 40.0% |
| !! | GAACCCAGCTTTGAAATGTT+TGG | + | Chr6:50545208-50545227 | None:intergenic | 40.0% |
| !! | GATTTTGACCACCTCAATGA+TGG | - | Chr6:50545559-50545578 | MsG0680032825.01.T01:CDS | 40.0% |
| AAGACTAGATTACCCGCTGT+TGG | - | Chr6:50545166-50545185 | MsG0680032825.01.T01:intron | 45.0% | |
| AGCAATGCCCATGATTACTC+CGG | - | Chr6:50545430-50545449 | MsG0680032825.01.T01:CDS | 45.0% | |
| CACAACCATGAAAAACCAGC+AGG | - | Chr6:50545100-50545119 | MsG0680032825.01.T01:intron | 45.0% | |
| GTGAAAAGACCTTGGATGTG+GGG | + | Chr6:50544343-50544362 | None:intergenic | 45.0% | |
| GTGATTCACCGGAGTAATCA+TGG | + | Chr6:50545441-50545460 | None:intergenic | 45.0% | |
| TGGTGGTCGTGGACAAAATA+TGG | - | Chr6:50544297-50544316 | MsG0680032825.01.T01:CDS | 45.0% | |
| ! | TCATGGGCATTGCTACTCAT+TGG | + | Chr6:50545424-50545443 | None:intergenic | 45.0% |
| ! | TTTCAGAAGATTGGTGGTCG+TGG | - | Chr6:50544286-50544305 | MsG0680032825.01.T01:CDS | 45.0% |
| !! | CTTTGATGACTTGTTCTGGG+AGG | + | Chr6:50545149-50545168 | None:intergenic | 45.0% |
| !!! | TTAAGATAAATAAATTTTAT+GGG | + | Chr6:50544781-50544800 | None:intergenic | 5.0% |
| !!! | TTTAAGATAAATAAATTTTA+TGG | + | Chr6:50544782-50544801 | None:intergenic | 5.0% |
| ACTCATTTCAGGGAGGGAGT+TGG | - | Chr6:50544851-50544870 | MsG0680032825.01.T01:intron | 50.0% | |
| AGCTTTCTTGGGGGTTGTTG+TGG | + | Chr6:50544022-50544041 | None:intergenic | 50.0% | |
| ATGTCGATCATCCAGAGAGC+AGG | - | Chr6:50545248-50545267 | MsG0680032825.01.T01:CDS | 50.0% | |
| CTCATTTCAGGGAGGGAGTT+GGG | - | Chr6:50544852-50544871 | MsG0680032825.01.T01:intron | 50.0% | |
| ! | TTAGCGGGTCCCCACATCCA+AGG | - | Chr6:50544331-50544350 | MsG0680032825.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 50543947 | 50545597 | 50543947 | ID=MsG0680032825.01;Name=MsG0680032825.01 |
| Chr6 | mRNA | 50543947 | 50545597 | 50543947 | ID=MsG0680032825.01.T01;Parent=MsG0680032825.01;Name=MsG0680032825.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|3|0|295 |
| Chr6 | exon | 50545413 | 50545597 | 50545413 | ID=MsG0680032825.01.T01:exon:10443;Parent=MsG0680032825.01.T01 |
| Chr6 | exon | 50545207 | 50545308 | 50545207 | ID=MsG0680032825.01.T01:exon:10444;Parent=MsG0680032825.01.T01 |
| Chr6 | exon | 50543947 | 50544547 | 50543947 | ID=MsG0680032825.01.T01:exon:10445;Parent=MsG0680032825.01.T01 |
| Chr6 | CDS | 50545413 | 50545597 | 50545413 | ID=MsG0680032825.01.T01:cds;Parent=MsG0680032825.01.T01 |
| Chr6 | CDS | 50545207 | 50545308 | 50545207 | ID=MsG0680032825.01.T01:cds;Parent=MsG0680032825.01.T01 |
| Chr6 | CDS | 50543947 | 50544547 | 50543947 | ID=MsG0680032825.01.T01:cds;Parent=MsG0680032825.01.T01 |
| Gene Sequence |
| Protein sequence |
