AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033318.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033318.01.T01 MTR_1g048120 67.429 175 33 1 38 188 172 346 1.60e-75 234
MsG0680033318.01.T01 MTR_2g461810 62.712 177 56 1 21 187 373 549 4.34e-67 221
MsG0680033318.01.T01 MTR_4g044357 59.459 111 44 1 78 188 2 111 8.65e-39 135
MsG0680033318.01.T01 MTR_0319s0030 42.308 182 75 4 37 189 196 376 2.81e-37 136
MsG0680033318.01.T01 MTR_4g046867 41.718 163 67 3 25 187 13 147 2.58e-34 122
MsG0680033318.01.T01 MTR_0046s0090 44.248 113 51 3 78 187 6 109 1.26e-22 95.9
MsG0680033318.01.T01 MTR_0013s0330 39.362 94 53 2 37 126 317 410 6.62e-13 68.6
MsG0680033318.01.T01 MTR_0013s0190 39.362 94 53 2 37 126 317 410 6.81e-13 68.6
MsG0680033318.01.T01 MTR_0401s0010 40.517 116 53 5 79 189 539 643 8.10e-13 68.6
MsG0680033318.01.T01 MTR_1g016990 47.222 72 32 1 62 127 17 88 1.01e-12 65.9
MsG0680033318.01.T01 MTR_4g051542 75.676 37 9 0 151 187 61 97 1.80e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033318.01.T01 AT2G32250 58.442 77 31 1 198 273 41 117 1.67e-20 91.7
MsG0680033318.01.T01 AT2G32250 58.442 77 31 1 198 273 41 117 1.67e-20 91.7
MsG0680033318.01.T01 AT2G32250 58.442 77 31 1 198 273 41 117 1.67e-20 91.7
MsG0680033318.01.T01 AT2G32250 58.442 77 31 1 198 273 41 117 1.69e-20 91.7
MsG0680033318.01.T01 AT2G32250 58.442 77 31 1 198 273 41 117 1.69e-20 91.7
MsG0680033318.01.T01 AT2G32250 58.442 77 31 1 198 273 41 117 1.72e-20 91.3
MsG0680033318.01.T01 AT2G32250 57.895 76 31 1 199 273 1 76 1.32e-19 89.0
MsG0680033318.01.T01 AT2G32250 57.895 76 31 1 199 273 1 76 1.38e-19 89.0
MsG0680033318.01.T01 AT1G76320 52.632 76 35 1 199 273 1 76 2.35e-18 85.1
MsG0680033318.01.T01 AT1G76320 52.632 76 35 1 199 273 1 76 2.42e-18 85.1
MsG0680033318.01.T01 AT1G76320 52.632 76 35 1 199 273 1 76 2.42e-18 85.1
MsG0680033318.01.T01 AT1G76320 52.632 76 35 1 199 273 1 76 2.93e-18 84.7
MsG0680033318.01.T01 AT3G22170 34.848 132 67 4 159 273 36 165 1.13e-17 83.2
MsG0680033318.01.T01 AT3G22170 34.848 132 67 4 159 273 36 165 1.13e-17 83.2
MsG0680033318.01.T01 AT4G19990 36.634 101 47 1 190 273 16 116 6.91e-13 68.9
MsG0680033318.01.T01 AT4G19990 36.634 101 47 1 190 273 16 116 6.91e-13 68.9
MsG0680033318.01.T01 AT4G19990 36.634 101 47 1 190 273 16 116 7.72e-13 68.9
MsG0680033318.01.T01 AT4G19990 36.634 101 47 1 190 273 30 130 8.06e-13 68.6
MsG0680033318.01.T01 AT4G19990 36.634 101 47 1 190 273 16 116 1.01e-12 68.6
MsG0680033318.01.T01 AT4G19990 36.634 101 47 1 190 273 16 116 1.01e-12 68.6
MsG0680033318.01.T01 AT4G15090 39.286 84 47 1 194 273 50 133 2.95e-12 67.0
MsG0680033318.01.T01 AT4G15090 39.286 84 47 1 194 273 50 133 2.95e-12 67.0
MsG0680033318.01.T01 AT4G15090 39.286 84 47 1 194 273 50 133 2.95e-12 67.0
MsG0680033318.01.T01 AT4G15090 39.286 84 47 1 194 273 50 133 2.95e-12 67.0
MsG0680033318.01.T01 AT4G15090 39.286 84 47 1 194 273 50 133 2.95e-12 67.0

Find 62 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAATGTCATATGTAATT+TGG 0.153214 6:-62188208 MsG0680033318.01.T01:CDS
ATCGTATTCAGCTGGTAAAA+TGG 0.345375 6:+62188182 None:intergenic
TTCCAATGTAAGGTTCTTCA+TGG 0.353929 6:+62186618 None:intergenic
CAATCTCATCCACTTTGGTT+TGG 0.364303 6:+62187995 None:intergenic
ACAAAATCCACGTCCTTGTT+TGG 0.367076 6:-62186429 MsG0680033318.01.T01:CDS
TTACATATGACATTGAAGTT+TGG 0.386313 6:+62188213 None:intergenic
TGGATGAACAAAGGTTTGAT+AGG 0.390543 6:+62188015 None:intergenic
CCTAACTCGTTATCCTCATT+AGG 0.401505 6:+62188258 None:intergenic
TCAAATTCCATTCCAATGTA+AGG 0.402468 6:+62186608 None:intergenic
ACCATTCTCTGATCACCCCT+TGG 0.406231 6:+62188339 None:intergenic
CCTAATGAGGATAACGAGTT+AGG 0.412030 6:-62188258 MsG0680033318.01.T01:CDS
AAATGCCTTTCTTTGACCTC+TGG 0.434830 6:+62188391 None:intergenic
TATGCTAAATGTGTCGGATT+TGG 0.446775 6:-62186551 MsG0680033318.01.T01:CDS
TGCCTCAATCCTTACTCAAA+AGG 0.450878 6:-62187927 MsG0680033318.01.T01:CDS
AGAGAATGGTAGAATCCAAT+AGG 0.465476 6:-62188326 MsG0680033318.01.T01:CDS
TTAGGATCCTCTTCGACTAC+AGG 0.472107 6:+62188276 None:intergenic
CAAACCAAAGTGGATGAGAT+TGG 0.475050 6:-62187994 MsG0680033318.01.T01:CDS
CCATTCTCTGATCACCCCTT+GGG 0.481425 6:+62188340 None:intergenic
AATACCAATCTCATCCACTT+TGG 0.489873 6:+62187990 None:intergenic
TCCACGTCCTTGTTTGGAGG+TGG 0.493252 6:-62186423 MsG0680033318.01.T01:CDS
CTTGTTTGGAGGTGGAGTGT+GGG 0.499768 6:-62186415 MsG0680033318.01.T01:CDS
CCTTGTTTGGAGGTGGAGTG+TGG 0.503398 6:-62186416 MsG0680033318.01.T01:CDS
TGCTTGTCGCAACAACTACA+AGG 0.505196 6:-62188452 MsG0680033318.01.T01:CDS
CAATCCTTACTCAAAAGGAT+TGG 0.513342 6:-62187922 MsG0680033318.01.T01:intron
TTGTTTGGAGGTGGAGTGTG+GGG 0.538731 6:-62186414 MsG0680033318.01.T01:CDS
AAGATGAAATTGTTGACCCA+AGG 0.542186 6:-62188356 MsG0680033318.01.T01:CDS
GTACATATCAAAAGAAATTG+AGG 0.547372 6:-62186386 None:intergenic
AGCAAACTTCTTCGAATCAA+AGG 0.547639 6:+62188471 None:intergenic
TGAAGAACCTTACATTGGAA+TGG 0.550850 6:-62186615 MsG0680033318.01.T01:CDS
CCACACTCCACCTCCAAACA+AGG 0.558039 6:+62186416 None:intergenic
CCCAAGGGGTGATCAGAGAA+TGG 0.558920 6:-62188340 MsG0680033318.01.T01:CDS
GCTCGATATGCTAAATGTGT+CGG 0.559196 6:-62186557 MsG0680033318.01.T01:CDS
GATATCATATCGTATTCAGC+TGG 0.560548 6:+62188174 None:intergenic
TTCTCTTCCTGTAGTCGAAG+AGG 0.561117 6:-62188283 MsG0680033318.01.T01:CDS
TTTGTTCATCCAAACCAAAG+TGG 0.567906 6:-62188004 MsG0680033318.01.T01:CDS
AACCATGAAGAACCTTACAT+TGG 0.573124 6:-62186620 MsG0680033318.01.T01:CDS
AAATCCACGTCCTTGTTTGG+AGG 0.575635 6:-62186426 MsG0680033318.01.T01:CDS
TTCCTCAGAATCATCAACTT+CGG 0.576617 6:+62188152 None:intergenic
GATTGGTATTAACAAAGTGT+TGG 0.591440 6:-62187977 MsG0680033318.01.T01:CDS
AGAGTTCAATGTCAAAGACA+TGG 0.594302 6:-62188130 MsG0680033318.01.T01:CDS
GAGTTCAATGTCAAAGACAT+GGG 0.595151 6:-62188129 MsG0680033318.01.T01:CDS
ACTTTGGTTTGGATGAACAA+AGG 0.596464 6:+62188006 None:intergenic
ATCCGAAGTTGATGATTCTG+AGG 0.597392 6:-62188154 MsG0680033318.01.T01:CDS
TTTGTTGTTATGCACAACAC+TGG 0.605458 6:+62188504 None:intergenic
AACAAAGTGTTGGTCGACGG+TGG 0.609089 6:-62187967 MsG0680033318.01.T01:CDS
TCCACCTCCAAACAAGGACG+TGG 0.618921 6:+62186422 None:intergenic
ACGTACCAGAGGTCAAAGAA+AGG 0.620238 6:-62188396 MsG0680033318.01.T01:CDS
TGAGGATAACGAGTTAGGAT+CGG 0.625282 6:-62188253 MsG0680033318.01.T01:CDS
ATTAACAAAGTGTTGGTCGA+CGG 0.629723 6:-62187970 MsG0680033318.01.T01:CDS
AGTCGAAGAGGATCCTAATG+AGG 0.631571 6:-62188271 MsG0680033318.01.T01:CDS
CTCAGTGGAGGACGTACCAG+AGG 0.637453 6:-62188407 MsG0680033318.01.T01:CDS
ATAGGAGACCAGCAAAAGAG+AGG 0.638075 6:-62188308 MsG0680033318.01.T01:CDS
AAATATGCTTGCACGAGACA+TGG 0.643012 6:-62186473 MsG0680033318.01.T01:CDS
AGTTCAATGTCAAAGACATG+GGG 0.651086 6:-62188128 MsG0680033318.01.T01:CDS
AGATGAAATTGTTGACCCAA+GGG 0.668558 6:-62188355 MsG0680033318.01.T01:CDS
GCTTGTCGCAACAACTACAA+GGG 0.678998 6:-62188451 MsG0680033318.01.T01:CDS
ACATGGGAAGAACAATGTGG+TGG 0.685952 6:-62188536 MsG0680033318.01.T01:CDS
ATCACATGACAAGAACTCAG+TGG 0.708392 6:-62188422 MsG0680033318.01.T01:CDS
ACATGACAAGAACTCAGTGG+AGG 0.709540 6:-62188419 MsG0680033318.01.T01:CDS
GATGAAATTGTTGACCCAAG+GGG 0.723057 6:-62188354 MsG0680033318.01.T01:CDS
GTTCAATGTCAAAGACATGG+GGG 0.733079 6:-62188127 MsG0680033318.01.T01:CDS
GCAACATGGGAAGAACAATG+TGG 0.820067 6:-62188539 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTAAAAAAAAAAAAA+AGG - Chr6:62187906-62187925 MsG0680033318.01.T01:intron 0.0%
!!! TTTTTTTTTTTTTTAATAAA+TGG + Chr6:62187907-62187926 None:intergenic 0.0%
!! AAATACATATATAAATATTG+GGG + Chr6:62187045-62187064 None:intergenic 10.0%
!! AAAAAAAAAAAAGGAATCAT+TGG - Chr6:62187915-62187934 MsG0680033318.01.T01:intron 15.0%
!!! AAAACATATTAATCTAAAGT+CGG - Chr6:62187151-62187170 MsG0680033318.01.T01:intron 15.0%
!!! AATATGTTTTGATTAAAAGA+AGG + Chr6:62187141-62187160 None:intergenic 15.0%
!!! ACTTCTTTTATACATATATT+AGG - Chr6:62188190-62188209 MsG0680033318.01.T01:CDS 15.0%
!!! CATCGTATTTAATATTTTTT+TGG - Chr6:62188144-62188163 MsG0680033318.01.T01:CDS 15.0%
!! AATTAAATTGAGTTTAGTCT+TGG + Chr6:62187437-62187456 None:intergenic 20.0%
!! ATACATATATTAGGAACTAA+TGG - Chr6:62188199-62188218 MsG0680033318.01.T01:CDS 20.0%
!! ATTTCTTAATTATCAGAAAG+TGG - Chr6:62187949-62187968 MsG0680033318.01.T01:CDS 20.0%
!!! ACAAAAGACAATTTTTTTAC+AGG + Chr6:62188055-62188074 None:intergenic 20.0%
!!! AGGATTACTATTTTTGATTT+AGG + Chr6:62187504-62187523 None:intergenic 20.0%
!!! TCAATTTCTTTTGATATGTA+CGG + Chr6:62188537-62188556 None:intergenic 20.0%
!!! TTATTTGACTTAAATTTACG+TGG + Chr6:62187547-62187566 None:intergenic 20.0%
! AAAAGTCATATACTACACAT+AGG + Chr6:62188084-62188103 None:intergenic 25.0%
! AAATTAACAGCCAATAGAAA+TGG + Chr6:62187617-62187636 None:intergenic 25.0%
! AATCACTTTGTAAAGGAAAA+TGG + Chr6:62187881-62187900 None:intergenic 25.0%
! ATCATTCACAAAATAACACA+TGG + Chr6:62186830-62186849 None:intergenic 25.0%
! CTTCAATGTCATATGTAATT+TGG - Chr6:62186714-62186733 MsG0680033318.01.T01:intron 25.0%
! GGTATGTAATGATCAATTAA+CGG - Chr6:62188165-62188184 MsG0680033318.01.T01:CDS 25.0%
! TCATTCACAAAATAACACAT+GGG + Chr6:62186829-62186848 None:intergenic 25.0%
! TTACATATGACATTGAAGTT+TGG + Chr6:62186712-62186731 None:intergenic 25.0%
!!! AAATCAAGAAAGGCATTAAA+TGG + Chr6:62187721-62187740 None:intergenic 25.0%
!!! ATGTGTTATTTTGTGAATGA+TGG - Chr6:62186829-62186848 MsG0680033318.01.T01:intron 25.0%
AAACTCATGACTAAGAAGTA+AGG + Chr6:62187324-62187343 None:intergenic 30.0%
AACTCATGACTAAGAAGTAA+GGG + Chr6:62187323-62187342 None:intergenic 30.0%
ACATATCATTCACTATTGAC+AGG + Chr6:62188263-62188282 None:intergenic 30.0%
ACCTTCATCTAAATCAAGAA+AGG + Chr6:62187731-62187750 None:intergenic 30.0%
ACGTGGACATAGATTTAAAA+TGG + Chr6:62187530-62187549 None:intergenic 30.0%
ACTTTGTAAAGGAAAATGGT+GGG + Chr6:62187877-62187896 None:intergenic 30.0%
ATGGACAAATCACTTTGTAA+AGG + Chr6:62187888-62187907 None:intergenic 30.0%
CTCATGAAAACCATTTCTAT+TGG - Chr6:62187604-62187623 MsG0680033318.01.T01:intron 30.0%
CTTAACTACCTTAGAATTAC+TGG - Chr6:62187259-62187278 MsG0680033318.01.T01:intron 30.0%
GATTGGTATTAACAAAGTGT+TGG - Chr6:62186945-62186964 MsG0680033318.01.T01:intron 30.0%
GTTATTGGAGAAAAATCAAG+AGG + Chr6:62187395-62187414 None:intergenic 30.0%
TCAAATTCCATTCCAATGTA+AGG + Chr6:62188317-62188336 None:intergenic 30.0%
! ACATAGATTTAAAATGGGGA+AGG + Chr6:62187524-62187543 None:intergenic 30.0%
! CGTGGACATAGATTTAAAAT+GGG + Chr6:62187529-62187548 None:intergenic 30.0%
! GATCAATTTGTTTCCTCTTA+TGG - Chr6:62187575-62187594 MsG0680033318.01.T01:intron 30.0%
! GTGGACATAGATTTAAAATG+GGG + Chr6:62187528-62187547 None:intergenic 30.0%
!! ATGATATGTTGCTGATTTAG+AGG - Chr6:62188274-62188293 MsG0680033318.01.T01:CDS 30.0%
AACCATGAAGAACCTTACAT+TGG - Chr6:62188302-62188321 MsG0680033318.01.T01:CDS 35.0%
AACTCCTACCAGTAATTCTA+AGG + Chr6:62187270-62187289 None:intergenic 35.0%
AAGACTACACACTTGTAATG+AGG + Chr6:62187665-62187684 None:intergenic 35.0%
AAGATGAAATTGTTGACCCA+AGG - Chr6:62186566-62186585 MsG0680033318.01.T01:CDS 35.0%
AATACCAATCTCATCCACTT+TGG + Chr6:62186935-62186954 None:intergenic 35.0%
ACTACCTTAGAATTACTGGT+AGG - Chr6:62187263-62187282 MsG0680033318.01.T01:intron 35.0%
AGACTACACACTTGTAATGA+GGG + Chr6:62187664-62187683 None:intergenic 35.0%
AGAGAATGGTAGAATCCAAT+AGG - Chr6:62186596-62186615 MsG0680033318.01.T01:CDS 35.0%
AGAGTTCAATGTCAAAGACA+TGG - Chr6:62186792-62186811 MsG0680033318.01.T01:intron 35.0%
AGATGAAATTGTTGACCCAA+GGG - Chr6:62186567-62186586 MsG0680033318.01.T01:CDS 35.0%
AGCAAACTTCTTCGAATCAA+AGG + Chr6:62186454-62186473 None:intergenic 35.0%
AGTCATATACTACACATAGG+AGG + Chr6:62188081-62188100 None:intergenic 35.0%
AGTTCAATGTCAAAGACATG+GGG - Chr6:62186794-62186813 MsG0680033318.01.T01:intron 35.0%
ATCGTATTCAGCTGGTAAAA+TGG + Chr6:62186743-62186762 None:intergenic 35.0%
ATGATGGCTCTTAAGACAAT+CGG - Chr6:62186845-62186864 MsG0680033318.01.T01:intron 35.0%
CAATCCTTACTCAAAAGGAT+TGG - Chr6:62187000-62187019 MsG0680033318.01.T01:intron 35.0%
CACTTTGTAAAGGAAAATGG+TGG + Chr6:62187878-62187897 None:intergenic 35.0%
CTTGGAAGATAATGCATGAA+CGG + Chr6:62187419-62187438 None:intergenic 35.0%
GAGTTCAATGTCAAAGACAT+GGG - Chr6:62186793-62186812 MsG0680033318.01.T01:intron 35.0%
GAGTTGTACATTAGTTCACA+TGG - Chr6:62187285-62187304 MsG0680033318.01.T01:intron 35.0%
GATATCATATCGTATTCAGC+TGG + Chr6:62186751-62186770 None:intergenic 35.0%
GCCTTTCTTGATTTAGATGA+AGG - Chr6:62187727-62187746 MsG0680033318.01.T01:intron 35.0%
GGCATTAAATGGCTTCTATT+TGG + Chr6:62187710-62187729 None:intergenic 35.0%
TAATGCATGAACGGAGTTAT+TGG + Chr6:62187410-62187429 None:intergenic 35.0%
TACTTAGCGCCAATTTATCT+AGG + Chr6:62187825-62187844 None:intergenic 35.0%
TATGCTAAATGTGTCGGATT+TGG - Chr6:62188371-62188390 MsG0680033318.01.T01:CDS 35.0%
TGAAGAACCTTACATTGGAA+TGG - Chr6:62188307-62188326 MsG0680033318.01.T01:CDS 35.0%
TGATTTAGGCAAGTAACGTT+TGG + Chr6:62187490-62187509 None:intergenic 35.0%
TGGATGAACAAAGGTTTGAT+AGG + Chr6:62186910-62186929 None:intergenic 35.0%
TGGTAAAAAACGAGAATCGA+CGG - Chr6:62188469-62188488 MsG0680033318.01.T01:CDS 35.0%
TTCCAATGTAAGGTTCTTCA+TGG + Chr6:62188307-62188326 None:intergenic 35.0%
TTCCTCAGAATCATCAACTT+CGG + Chr6:62186773-62186792 None:intergenic 35.0%
TTTGTTCATCCAAACCAAAG+TGG - Chr6:62186918-62186937 MsG0680033318.01.T01:intron 35.0%
! ATATTGGGGTGTTACATTGT+CGG + Chr6:62187031-62187050 None:intergenic 35.0%
! CAAGAGGAGAGGTTTAAAAT+CGG + Chr6:62187379-62187398 None:intergenic 35.0%
! CACTCTTCATTTTCATCGAT+AGG + Chr6:62188227-62188246 None:intergenic 35.0%
! GAAATGGTTTTCATGAGACT+TGG + Chr6:62187601-62187620 None:intergenic 35.0%
! TAACGTTTGGTCTTCATACT+TGG + Chr6:62187477-62187496 None:intergenic 35.0%
!! ACTTTGGTTTGGATGAACAA+AGG + Chr6:62186919-62186938 None:intergenic 35.0%
!! AGAAAAGTGTTGTACGTCAT+TGG - Chr6:62188005-62188024 MsG0680033318.01.T01:CDS 35.0%
!! ATCCTTTTGAGTAAGGATTG+AGG + Chr6:62187000-62187019 None:intergenic 35.0%
!! ATTAACAAAGTGTTGGTCGA+CGG - Chr6:62186952-62186971 MsG0680033318.01.T01:intron 35.0%
!! CTTACCAATCCTTTTGAGTA+AGG + Chr6:62187007-62187026 None:intergenic 35.0%
!! TTTGTTGTTATGCACAACAC+TGG + Chr6:62186421-62186440 None:intergenic 35.0%
!!! CGTCATTGGTCATTTTTGTA+AGG - Chr6:62188019-62188038 MsG0680033318.01.T01:CDS 35.0%
AAATATGCTTGCACGAGACA+TGG - Chr6:62188449-62188468 MsG0680033318.01.T01:CDS 40.0%
AAATGCCTTTCTTTGACCTC+TGG + Chr6:62186534-62186553 None:intergenic 40.0%
ACAAAATCCACGTCCTTGTT+TGG - Chr6:62188493-62188512 MsG0680033318.01.T01:CDS 40.0%
ATCACATGACAAGAACTCAG+TGG - Chr6:62186500-62186519 MsG0680033318.01.T01:CDS 40.0%
ATCATCAGGCTGCTCAAATA+TGG + Chr6:62186875-62186894 None:intergenic 40.0%
CAAACCAAAGTGGATGAGAT+TGG - Chr6:62186928-62186947 MsG0680033318.01.T01:intron 40.0%
CAATCTCATCCACTTTGGTT+TGG + Chr6:62186930-62186949 None:intergenic 40.0%
CCTAACTCGTTATCCTCATT+AGG + Chr6:62186667-62186686 None:intergenic 40.0%
CCTAATGAGGATAACGAGTT+AGG - Chr6:62186664-62186683 MsG0680033318.01.T01:intron 40.0%
GATGAAATTGTTGACCCAAG+GGG - Chr6:62186568-62186587 MsG0680033318.01.T01:CDS 40.0%
GCTCGATATGCTAAATGTGT+CGG - Chr6:62188365-62188384 MsG0680033318.01.T01:CDS 40.0%
GGATTCCTTATCGAATCATC+AGG + Chr6:62186889-62186908 None:intergenic 40.0%
GGTCTTCATACTTGGTCAAA+GGG + Chr6:62187469-62187488 None:intergenic 40.0%
GTTCAATGTCAAAGACATGG+GGG - Chr6:62186795-62186814 MsG0680033318.01.T01:intron 40.0%
TCATGAGTTTGATCGCAGTT+AGG - Chr6:62187334-62187353 MsG0680033318.01.T01:intron 40.0%
TGAGGATAACGAGTTAGGAT+CGG - Chr6:62186669-62186688 MsG0680033318.01.T01:intron 40.0%
TGCCTCAATCCTTACTCAAA+AGG - Chr6:62186995-62187014 MsG0680033318.01.T01:intron 40.0%
TGGAGAAAAATCAAGAGGAG+AGG + Chr6:62187390-62187409 None:intergenic 40.0%
TGGTCTTCATACTTGGTCAA+AGG + Chr6:62187470-62187489 None:intergenic 40.0%
TTCACTATTGACAGGCTCAT+TGG + Chr6:62188255-62188274 None:intergenic 40.0%
! AGAGAAAACCTCTCTTTTGC+TGG + Chr6:62186625-62186644 None:intergenic 40.0%
! GACTAAGAAGTAAGGGTACA+AGG + Chr6:62187316-62187335 None:intergenic 40.0%
! TATGGGAACCTCAAACGTTT+TGG - Chr6:62187797-62187816 MsG0680033318.01.T01:intron 40.0%
!! ATCCGAAGTTGATGATTCTG+AGG - Chr6:62186768-62186787 MsG0680033318.01.T01:intron 40.0%
!! GTTTTGGCGCCTAGATAAAT+TGG - Chr6:62187813-62187832 MsG0680033318.01.T01:intron 40.0%
ACATGACAAGAACTCAGTGG+AGG - Chr6:62186503-62186522 MsG0680033318.01.T01:CDS 45.0%
ACGTACCAGAGGTCAAAGAA+AGG - Chr6:62186526-62186545 MsG0680033318.01.T01:CDS 45.0%
AGCAGCCTGATGATTCGATA+AGG - Chr6:62186881-62186900 MsG0680033318.01.T01:intron 45.0%
AGTCGAAGAGGATCCTAATG+AGG - Chr6:62186651-62186670 MsG0680033318.01.T01:intron 45.0%
ATAGGAGACCAGCAAAAGAG+AGG - Chr6:62186614-62186633 MsG0680033318.01.T01:CDS 45.0%
ATGAGGGAGAGAGAGAGAAA+CGG + Chr6:62187648-62187667 None:intergenic 45.0%
GCTTGTCGCAACAACTACAA+GGG - Chr6:62186471-62186490 MsG0680033318.01.T01:CDS 45.0%
TCATGAGACTTGGCCATAAG+AGG + Chr6:62187591-62187610 None:intergenic 45.0%
TGCTTGTCGCAACAACTACA+AGG - Chr6:62186470-62186489 MsG0680033318.01.T01:CDS 45.0%
TTAGGATCCTCTTCGACTAC+AGG + Chr6:62186649-62186668 None:intergenic 45.0%
TTCTCTTCCTGTAGTCGAAG+AGG - Chr6:62186639-62186658 MsG0680033318.01.T01:intron 45.0%
! AAATCCACGTCCTTGTTTGG+AGG - Chr6:62188496-62188515 MsG0680033318.01.T01:CDS 45.0%
!! CTCTTTTGCTGGTCTCCTAT+TGG + Chr6:62186614-62186633 None:intergenic 45.0%
!! AAAAATACATATATAAATAT+TGG + Chr6:62187047-62187066 None:intergenic 5.0%
!! AAAATACATATATAAATATT+GGG + Chr6:62187046-62187065 None:intergenic 5.0%
!! AATTATTTAATTAAAATCTT+AGG + Chr6:62187196-62187215 None:intergenic 5.0%
!! ATAAATAAAAAACAATTAAA+TGG + Chr6:62187773-62187792 None:intergenic 5.0%
!!! GTTTTTTATTTATTTTTTAT+GGG - Chr6:62187780-62187799 MsG0680033318.01.T01:intron 5.0%
!!! TGTTTTTTATTTATTTTTTA+TGG - Chr6:62187779-62187798 MsG0680033318.01.T01:intron 5.0%
ACCATTCTCTGATCACCCCT+TGG + Chr6:62186586-62186605 None:intergenic 50.0%
CCATTCTCTGATCACCCCTT+GGG + Chr6:62186585-62186604 None:intergenic 50.0%
CTTGTTTGGAGGTGGAGTGT+GGG - Chr6:62188507-62188526 MsG0680033318.01.T01:CDS 50.0%
TCTAGGCGCCAAAACGTTTG+AGG + Chr6:62187808-62187827 None:intergenic 50.0%
TTGTTTGGAGGTGGAGTGTG+GGG - Chr6:62188508-62188527 MsG0680033318.01.T01:CDS 50.0%
!! AACAAAGTGTTGGTCGACGG+TGG - Chr6:62186955-62186974 MsG0680033318.01.T01:intron 50.0%
AGGGAGAGAGAGAGAAACGG+TGG + Chr6:62187645-62187664 None:intergenic 55.0%
CCACACTCCACCTCCAAACA+AGG + Chr6:62188509-62188528 None:intergenic 55.0%
CCCAAGGGGTGATCAGAGAA+TGG - Chr6:62186582-62186601 MsG0680033318.01.T01:CDS 55.0%
GGGAGAGAGAGAGAAACGGT+GGG + Chr6:62187644-62187663 None:intergenic 55.0%
TCCACCTCCAAACAAGGACG+TGG + Chr6:62188503-62188522 None:intergenic 55.0%
! CCTTGTTTGGAGGTGGAGTG+TGG - Chr6:62188506-62188525 MsG0680033318.01.T01:CDS 55.0%
! TCCACGTCCTTGTTTGGAGG+TGG - Chr6:62188499-62188518 MsG0680033318.01.T01:CDS 55.0%
CTCAGTGGAGGACGTACCAG+AGG - Chr6:62186515-62186534 MsG0680033318.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 62186388 62188556 62186388 ID=MsG0680033318.01;Name=MsG0680033318.01
Chr6 mRNA 62186388 62188556 62186388 ID=MsG0680033318.01.T01;Parent=MsG0680033318.01;Name=MsG0680033318.01.T01;_AED=0.53;_eAED=0.65;_QI=0|0|0|0.66|1|1|3|0|274
Chr6 exon 62188114 62188556 62188114 ID=MsG0680033318.01.T01:exon:19285;Parent=MsG0680033318.01.T01
Chr6 exon 62187923 62188041 62187923 ID=MsG0680033318.01.T01:exon:19286;Parent=MsG0680033318.01.T01
Chr6 exon 62186388 62186650 62186388 ID=MsG0680033318.01.T01:exon:19287;Parent=MsG0680033318.01.T01
Chr6 CDS 62188114 62188556 62188114 ID=MsG0680033318.01.T01:cds;Parent=MsG0680033318.01.T01
Chr6 CDS 62187923 62188041 62187923 ID=MsG0680033318.01.T01:cds;Parent=MsG0680033318.01.T01
Chr6 CDS 62186388 62186650 62186388 ID=MsG0680033318.01.T01:cds;Parent=MsG0680033318.01.T01
Gene Sequence

>MsG0680033318.01.T01

ATGGGAAGAACAATGTGGTGGAAAGAAACACCAGTGTTGTGCATAACAACAAAAATGCTACTGCCTTTGATTCGAAGAAGTTTGCTTGTCGCAACAACTACAAGGGAAAAAAATCACATGACAAGAACTCAGTGGAGGACGTACCAGAGGTCAAAGAAAGGCATTTCTACAAGCATTGAAGATGAAATTGTTGACCCAAGGGGTGATCAGAGAATGGTAGAATCCAATAGGAGACCAGCAAAAGAGAGGTTTTCTCTTCCTGTAGTCGAAGAGGATCCTAATGAGGATAACGAGTTAGGATCGGAATTTACAGATTCAGAACCAAACTTCAATGTCATATGTAATTTGGTTTCCATTTTACCAGCTGAATACGATATGATATCCGAAGTTGATGATTCTGAGGAAGAGTTCAATGTCAAAGACATGGGGGAATACAAGCCCATGAATCCTATCAAACCTTTGTTCATCCAAACCAAAGTGGATGAGATTGGTATTAACAAAGTGTTGGTCGACGGTGGCGCTGCTGTCAATCTAATGCCTCAATCCTTACTCAAAAGGATTGAGGTTAAGAACCATGAAGAACCTTACATTGGAATGGAATTTGAGTCACAAGAAGATGCTTATTCTTTCTATGCTCGATATGCTAAATGTGTCGGATTTGGTGTATGCACTAAAATTAGTCATCGTTCGAAAATTTCTAAACAATTTATTGATGTGAAATATGCTTGCACGAGACATGGTAAAAAACGAGAATCGACGGCACAAAATCCACGTCCTTGTTTGGAGGTGGAGTGTGGGGCTGCCGTACATATCAAAAGAAATTGA
Protein sequence

>MsG0680033318.01.T01

MGRTMWWKETPVLCITTKMLLPLIRRSLLVATTTREKNHMTRTQWRTYQRSKKGISTSIEDEIVDPRGDQRMVESNRRPAKERFSLPVVEEDPNEDNELGSEFTDSEPNFNVICNLVSILPAEYDMISEVDDSEEEFNVKDMGEYKPMNPIKPLFIQTKVDEIGINKVLVDGGAAVNLMPQSLLKRIEVKNHEEPYIGMEFESQEDAYSFYARYAKCVGFGVCTKISHRSKISKQFIDVKYACTRHGKKRESTAQNPRPCLEVECGAAVHIKRN*