AlfalfaGEDB | MsG0680034050.01

M. sativa cultivar ZhongmuNo.1 / MsG0680034050.01

KEGG: -
GO: GO:0003677
PFAM: PF02362

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034050.01.T01	RHN78227.1	52.381	315	90	7	1	264	1	306	1.61E-94	293

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034050.01.T01	Q84R27	31.731	104	70	1	7	110	22	124	9.41E-13	68.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034050.01.T01	A0A396JU70	52.381	315	90	7	1	264	1	306	7.69e-95	293

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TFs/TRs:

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Gene ID	Type	Classification
MsG0680034050.01.T01	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034050.01.T01	MTR_4g119990	76.027	146	32	1	118	260	178	323	1.56e-73	230
MsG0680034050.01.T01	MTR_4g119990	81.651	109	20	0	1	109	1	109	3.70e-58	190
MsG0680034050.01.T01	MTR_1g035440	77.982	109	24	0	1	109	1	109	7.20e-56	180
MsG0680034050.01.T01	MTR_1g035440	63.265	49	16	1	110	156	195	243	7.53e-13	67.0
MsG0680034050.01.T01	MTR_6g043890	73.394	109	29	0	1	109	1	109	6.97e-54	178
MsG0680034050.01.T01	MTR_6g043890	59.016	122	50	0	117	238	174	295	7.42e-45	155
MsG0680034050.01.T01	MTR_5g044670	25.743	303	164	8	15	260	16	314	2.49e-25	102
MsG0680034050.01.T01	MTR_3g061340	29.630	270	130	9	10	234	7	261	6.16e-24	98.2
MsG0680034050.01.T01	MTR_3g098790	28.231	294	155	8	9	248	7	298	1.60e-23	98.2
MsG0680034050.01.T01	MTR_7g050560	29.010	293	159	9	1	248	1	289	6.06e-23	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034050.01.T01	AT3G18960	31.731	104	70	1	7	110	22	124	6.15e-14	69.3
MsG0680034050.01.T01	AT3G18960	31.731	104	70	1	7	110	22	124	9.59e-14	68.9
MsG0680034050.01.T01	AT4G31690	24.017	229	169	4	14	241	13	237	2.82e-13	68.6
MsG0680034050.01.T01	AT4G01580	29.808	104	72	1	7	110	22	124	4.14e-13	67.0
MsG0680034050.01.T01	AT4G31640	23.789	227	160	6	14	234	13	232	1.13e-12	67.8
MsG0680034050.01.T01	AT4G31650	21.875	224	168	4	14	234	13	232	1.11e-11	65.1
MsG0680034050.01.T01	AT4G31680	23.874	222	163	5	14	234	13	229	1.89e-11	64.3

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Find 37 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCTGCACGTGATGGA+AGG	0.557273	6:-79553956	MsG0680034050.01.T01:CDS
AAACCAAACATCATAATCAC+TGG	0.538084	6:+79555166	None:intergenic
AAACCAGTGATTATGATGTT+TGG	0.387209	6:-79555169	MsG0680034050.01.T01:CDS
AAATAAATTACCTTCAAAAT+AGG	0.207151	6:+79553715	None:intergenic
AATAAATTACCTTCAAAATA+GGG	0.393629	6:+79553716	None:intergenic
AATAATCAATTTACACTAAG+TGG	0.456060	6:-79553869	MsG0680034050.01.T01:CDS
AATCAATTTACACTAAGTGG+TGG	0.617140	6:-79553866	MsG0680034050.01.T01:CDS
AATTTACACTAAGTGGTGGT+TGG	0.508389	6:-79553862	MsG0680034050.01.T01:CDS
AGGTAGTTGTGATAATCTTA+AGG	0.476364	6:-79554663	MsG0680034050.01.T01:CDS
ATACATTGAAAGAGATCACT+TGG	0.619250	6:-79554558	MsG0680034050.01.T01:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAACATCATAATCAC+TGG	+	Chr6:79554309-79554328	None:intergenic	30.0%
AAACCAGTGATTATGATGTT+TGG	-	Chr6:79554303-79554322	MsG0680034050.01.T01:intron	30.0%
AACTACTGAAGAATATGAAG+AGG	-	Chr6:79554469-79554488	MsG0680034050.01.T01:intron	30.0%
AATCAATTTACACTAAGTGG+TGG	-	Chr6:79555606-79555625	MsG0680034050.01.T01:intron	30.0%
AGGTAGTTGTGATAATCTTA+AGG	-	Chr6:79554809-79554828	MsG0680034050.01.T01:intron	30.0%
ATACATTGAAAGAGATCACT+TGG	-	Chr6:79554914-79554933	MsG0680034050.01.T01:intron	30.0%
ATACTCATTCATCACATTCA+AGG	+	Chr6:79553858-79553877	None:intergenic	30.0%
CTTCAGTAGTTTCTTTCAAA+GGG	+	Chr6:79554460-79554479	None:intergenic	30.0%
CTTCTCAAGAATTTGATCAT+CGG	-	Chr6:79553677-79553696	MsG0680034050.01.T01:CDS	30.0%
GTTAGAAAATTGCATCCATT+TGG	-	Chr6:79555437-79555456	MsG0680034050.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	79553673	79555821	79553673	ID=MsG0680034050.01;Name=MsG0680034050.01
Chr6	mRNA	79553673	79555821	79553673	ID=MsG0680034050.01.T01;Parent=MsG0680034050.01;Name=MsG0680034050.01.T01;_AED=0.50;_eAED=0.53;_QI=0\|0\|0\|1\|0.33\|0.25\|4\|0\|277
Chr6	exon	79555735	79555821	79555735	ID=MsG0680034050.01.T01:exon:17437;Parent=MsG0680034050.01.T01
Chr6	exon	79555053	79555291	79555053	ID=MsG0680034050.01.T01:exon:17436;Parent=MsG0680034050.01.T01
Chr6	exon	79554559	79554736	79554559	ID=MsG0680034050.01.T01:exon:17435;Parent=MsG0680034050.01.T01
Chr6	exon	79553673	79554002	79553673	ID=MsG0680034050.01.T01:exon:17434;Parent=MsG0680034050.01.T01
Chr6	CDS	79555735	79555821	79555735	ID=MsG0680034050.01.T01:cds;Parent=MsG0680034050.01.T01
Chr6	CDS	79555053	79555291	79555053	ID=MsG0680034050.01.T01:cds;Parent=MsG0680034050.01.T01
Chr6	CDS	79554559	79554736	79554559	ID=MsG0680034050.01.T01:cds;Parent=MsG0680034050.01.T01
Chr6	CDS	79553673	79554002	79553673	ID=MsG0680034050.01.T01:cds;Parent=MsG0680034050.01.T01

Gene Sequence

>MsG0680034050.01.T01

ATGTCTTCTCAAGAATTTGATCATCGGAGTATTGGTCTCCACTTTTTCAAAATCATTCTTCAAAGTAGCCTTCAAGAAGGAAAACTGAAAGTACCCTTAGGTTTTGTGAGAAGACATTGGCAAGGAATAAAAAACCCAGTTACTCTAAGGCTTCCAAATACGACCGAAAAGAAAGTTACTTGGGAGAAAACCAGTGATTATGATGTTTGGTTTTGCAATGGTTGGAAGGAATTTGCAGATTATTTATCTTTAGGCGATTCACAGCTTTTGATATTTCAATATCAAGAAAATTCTCTCTTTAATGTGATTGTATTGGGTAAATGCGGGTGTTACTACTTAATTTTTTTTTTTGGTGATTTCCTCAAATTTTCAGCAGGAGGTAGTTGTGATAATCTTAAGGAGCGAAGCAAACTTTTGTACAATAAAGTGAAGAACAAATTTCACTCTAATAAGAACTTCTTCCTTTGTGTGATCCAAAAGACATACATTGAAAGAGATCACTTGGTCATACCAATTGAATTTGCCAAGAAACATCTGCACGTGATGGAAGGAAGAAAGGTTACTCTTTTTGTTGATAAAGACATAACATGGAATGTTGATTTGAATCTCACTTCAAATAATCAATTTACACTAAGTGGTGGTTGGAGTAAATTTCGAGCTCACAATAATTTAAAATTTGGTGATATCTGTGTTTTTATGATAAACAAATGCAAAGGAAAAGTTTCATTCCAAGTTGCTATTTTCTCTCTCGAAAAGGAGATGAGCACTCCCTATTTTGAAGGTAATTTATTTACTTGCCGCTATTTTTCAATTGTAATCTTTTACTTTAGATAA

Protein sequence

>MsG0680034050.01.T01

MSSQEFDHRSIGLHFFKIILQSSLQEGKLKVPLGFVRRHWQGIKNPVTLRLPNTTEKKVTWEKTSDYDVWFCNGWKEFADYLSLGDSQLLIFQYQENSLFNVIVLGKCGCYYLIFFFGDFLKFSAGGSCDNLKERSKLLYNKVKNKFHSNKNFFLCVIQKTYIERDHLVIPIEFAKKHLHVMEGRKVTLFVDKDITWNVDLNLTSNNQFTLSGGWSKFRAHNNLKFGDICVFMINKCKGKVSFQVAIFSLEKEMSTPYFEGNLFTCRYFSIVIFYFR*