AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034050.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034050.01.T01 MTR_4g119990 76.027 146 32 1 118 260 178 323 1.56e-73 230
MsG0680034050.01.T01 MTR_4g119990 81.651 109 20 0 1 109 1 109 3.70e-58 190
MsG0680034050.01.T01 MTR_1g035440 77.982 109 24 0 1 109 1 109 7.20e-56 180
MsG0680034050.01.T01 MTR_1g035440 63.265 49 16 1 110 156 195 243 7.53e-13 67.0
MsG0680034050.01.T01 MTR_6g043890 73.394 109 29 0 1 109 1 109 6.97e-54 178
MsG0680034050.01.T01 MTR_6g043890 59.016 122 50 0 117 238 174 295 7.42e-45 155
MsG0680034050.01.T01 MTR_5g044670 25.743 303 164 8 15 260 16 314 2.49e-25 102
MsG0680034050.01.T01 MTR_3g061340 29.630 270 130 9 10 234 7 261 6.16e-24 98.2
MsG0680034050.01.T01 MTR_3g098790 28.231 294 155 8 9 248 7 298 1.60e-23 98.2
MsG0680034050.01.T01 MTR_7g050560 29.010 293 159 9 1 248 1 289 6.06e-23 96.3
MsG0680034050.01.T01 MTR_7g050710 27.817 284 142 9 13 234 11 293 1.14e-22 95.5
MsG0680034050.01.T01 MTR_3g005490 26.582 237 151 6 14 236 20 247 4.74e-22 92.8
MsG0680034050.01.T01 MTR_3g061290 46.316 95 48 2 13 107 10 101 1.72e-21 89.7
MsG0680034050.01.T01 MTR_3g061370 27.574 272 150 9 9 236 3 271 2.92e-20 88.2
MsG0680034050.01.T01 MTR_3g061320 27.018 285 144 8 13 248 10 279 3.04e-20 88.2
MsG0680034050.01.T01 MTR_1g033740 44.681 94 48 3 12 105 19 108 7.70e-20 85.1
MsG0680034050.01.T01 MTR_3g061350 27.068 266 147 6 15 236 12 274 2.27e-19 85.9
MsG0680034050.01.T01 MTR_3g005480 27.004 237 152 6 14 236 20 249 3.24e-19 85.1
MsG0680034050.01.T01 MTR_1g035480 43.617 94 49 3 12 105 14 103 4.32e-19 82.8
MsG0680034050.01.T01 MTR_3g061310 27.336 289 150 11 10 248 7 285 5.04e-19 85.1
MsG0680034050.01.T01 MTR_1g050845 25.556 270 153 9 14 247 8 265 2.67e-17 82.0
MsG0680034050.01.T01 MTR_7g050720 42.708 96 54 1 14 109 9 103 8.62e-17 79.3
MsG0680034050.01.T01 MTR_1g035500 41.489 94 51 3 12 105 22 111 9.80e-17 76.6
MsG0680034050.01.T01 MTR_6g061070 40.860 93 51 3 12 104 15 103 4.78e-16 78.2
MsG0680034050.01.T01 MTR_3g005495 26.160 237 167 3 14 247 242 473 4.88e-16 78.2
MsG0680034050.01.T01 MTR_1g035620 25.182 274 161 9 14 247 8 277 8.52e-16 77.0
MsG0680034050.01.T01 MTR_3g061330 36.634 101 61 2 10 110 7 104 1.03e-15 75.1
MsG0680034050.01.T01 MTR_5g070440 25.781 256 161 7 14 248 20 267 1.65e-15 75.1
MsG0680034050.01.T01 MTR_7g050580 40.625 96 56 1 14 109 12 106 2.33e-15 75.1
MsG0680034050.01.T01 MTR_7g050640 38.318 107 64 2 3 109 2 106 3.19e-15 70.9
MsG0680034050.01.T01 MTR_3g005460 27.755 245 161 7 14 254 24 256 8.52e-15 74.3
MsG0680034050.01.T01 MTR_3g005460 24.603 252 154 8 12 234 259 503 4.91e-12 66.2
MsG0680034050.01.T01 MTR_1g035650 39.130 92 53 2 15 106 9 97 1.02e-14 71.6
MsG0680034050.01.T01 MTR_1g035470 46.667 75 36 3 31 105 2 72 1.58e-14 69.7
MsG0680034050.01.T01 MTR_3g005420 25.391 256 162 6 14 248 288 535 1.70e-14 73.6
MsG0680034050.01.T01 MTR_8g103940 33.684 95 62 1 13 107 37 130 7.17e-14 71.6
MsG0680034050.01.T01 MTR_1g035510 49.333 75 34 3 31 105 2 72 1.86e-13 68.6
MsG0680034050.01.T01 MTR_1g035640 40.217 92 48 3 15 106 9 93 6.55e-13 68.6
MsG0680034050.01.T01 MTR_1g035460 38.043 92 50 2 31 119 2 89 3.91e-12 66.2
MsG0680034050.01.T01 MTR_1g035570 38.554 83 48 2 24 106 14 93 4.19e-12 66.2
MsG0680034050.01.T01 MTR_1g035520 42.667 75 39 3 31 105 88 158 5.89e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034050.01.T01 AT3G18960 31.731 104 70 1 7 110 22 124 6.15e-14 69.3
MsG0680034050.01.T01 AT3G18960 31.731 104 70 1 7 110 22 124 9.59e-14 68.9
MsG0680034050.01.T01 AT4G31690 24.017 229 169 4 14 241 13 237 2.82e-13 68.6
MsG0680034050.01.T01 AT4G01580 29.808 104 72 1 7 110 22 124 4.14e-13 67.0
MsG0680034050.01.T01 AT4G31640 23.789 227 160 6 14 234 13 232 1.13e-12 67.8
MsG0680034050.01.T01 AT4G31650 21.875 224 168 4 14 234 13 232 1.11e-11 65.1
MsG0680034050.01.T01 AT4G31680 23.874 222 163 5 14 234 13 229 1.89e-11 64.3

Find 37 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCACAATAATTTAAAATT+TGG 0.142889 6:-79553827 MsG0680034050.01.T01:CDS
CTCTTTCAATGTATGTCTTT+TGG 0.144880 6:+79554567 None:intergenic
AAATAAATTACCTTCAAAAT+AGG 0.207151 6:+79553715 None:intergenic
CATCACGTGCAGATGTTTCT+TGG 0.219446 6:+79553961 None:intergenic
CTCTTTAATGTGATTGTATT+GGG 0.236526 6:-79555062 MsG0680034050.01.T01:CDS
TTTGGAAGCCTTAGAGTAAC+TGG 0.265708 6:+79555221 None:intergenic
TTTGCAGATTATTTATCTTT+AGG 0.277023 6:-79555125 MsG0680034050.01.T01:CDS
TCTCTTTAATGTGATTGTAT+TGG 0.347950 6:-79555063 MsG0680034050.01.T01:CDS
AAACCAGTGATTATGATGTT+TGG 0.387209 6:-79555169 MsG0680034050.01.T01:CDS
AATAAATTACCTTCAAAATA+GGG 0.393629 6:+79553716 None:intergenic
TAGCCTTCAAGAAGGAAAAC+TGG 0.409944 6:-79555734 MsG0680034050.01.T01:intron
TGTTTCTTGGCAAATTCAAT+TGG 0.419212 6:+79553974 None:intergenic
TACCTCCTGCTGAAAATTTG+AGG 0.432319 6:+79554681 None:intergenic
GAATTTGATCATCGGAGTAT+TGG 0.443640 6:-79555787 MsG0680034050.01.T01:CDS
AATAATCAATTTACACTAAG+TGG 0.456060 6:-79553869 MsG0680034050.01.T01:CDS
CGAGAGAGAAAATAGCAACT+TGG 0.460403 6:+79553756 None:intergenic
CGACCGAAAAGAAAGTTACT+TGG 0.465223 6:-79555196 MsG0680034050.01.T01:CDS
AGGTAGTTGTGATAATCTTA+AGG 0.476364 6:-79554663 MsG0680034050.01.T01:CDS
ATGTCTTCTCACAAAACCTA+AGG 0.504643 6:+79555262 None:intergenic
AATTTACACTAAGTGGTGGT+TGG 0.508389 6:-79553862 MsG0680034050.01.T01:CDS
AAACCAAACATCATAATCAC+TGG 0.538084 6:+79555166 None:intergenic
GCACGTGATGGAAGGAAGAA+AGG 0.540531 6:-79553948 MsG0680034050.01.T01:CDS
AAACATCTGCACGTGATGGA+AGG 0.557273 6:-79553956 MsG0680034050.01.T01:CDS
CTTCAAAGTAGCCTTCAAGA+AGG 0.558054 6:-79555742 MsG0680034050.01.T01:CDS
CTTCTCAAGAATTTGATCAT+CGG 0.561271 6:-79555795 MsG0680034050.01.T01:CDS
GTATGACAGAAAGTACCCTT+AGG 0.563021 6:-79555278 MsG0680034050.01.T01:intron
GACCGAAAAGAAAGTTACTT+GGG 0.563538 6:-79555195 MsG0680034050.01.T01:CDS
TTTATGATAAACAAATGCAA+AGG 0.569119 6:-79553791 MsG0680034050.01.T01:CDS
TTGTTGATAAAGACATAACA+TGG 0.582622 6:-79553916 MsG0680034050.01.T01:CDS
TGATTGTATTGGGTAAATGC+GGG 0.584281 6:-79555052 MsG0680034050.01.T01:intron
GTGATTGTATTGGGTAAATG+CGG 0.585829 6:-79555053 MsG0680034050.01.T01:CDS
TTGGAAGCCTTAGAGTAACT+GGG 0.604374 6:+79555222 None:intergenic
TGTCTTCTCACAAAACCTAA+GGG 0.611258 6:+79555263 None:intergenic
CAAGAAACATCTGCACGTGA+TGG 0.614561 6:-79553960 MsG0680034050.01.T01:CDS
AATCAATTTACACTAAGTGG+TGG 0.617140 6:-79553866 MsG0680034050.01.T01:CDS
ATACATTGAAAGAGATCACT+TGG 0.619250 6:-79554558 MsG0680034050.01.T01:intron
TTTGTGAGAAGACATTGGCA+AGG 0.633520 6:-79555254 MsG0680034050.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATTAAAATGGAATTA+TGG + Chr6:79555275-79555294 None:intergenic 10.0%
!! AGATTGTTAAAAAAAATAAA+AGG + Chr6:79553778-79553797 None:intergenic 10.0%
!! CTATTTAAAAAATGAAAATT+TGG - Chr6:79553943-79553962 MsG0680034050.01.T01:CDS 10.0%
!!! AATTTTCATTTTTTAAATAG+GGG + Chr6:79553943-79553962 None:intergenic 10.0%
!!! CAAATTTTCATTTTTTAAAT+AGG + Chr6:79553945-79553964 None:intergenic 10.0%
!!! TACTACTTAATTTTTTTTTT+TGG - Chr6:79554762-79554781 MsG0680034050.01.T01:intron 10.0%
!!! TATTTGACATTTTTTTTTTT+TGG - Chr6:79554950-79554969 MsG0680034050.01.T01:intron 10.0%
!! AAATAAATTACCTTCAAAAT+AGG + Chr6:79555760-79555779 None:intergenic 15.0%
!! AATAAATTACCTTCAAAATA+GGG + Chr6:79555759-79555778 None:intergenic 15.0%
!! AGATATGAATTGAAAAATTA+GGG - Chr6:79553798-79553817 MsG0680034050.01.T01:CDS 15.0%
!! TAGATATGAATTGAAAAATT+AGG - Chr6:79553797-79553816 MsG0680034050.01.T01:CDS 15.0%
!! TATATAAAATGAAACATAAC+AGG + Chr6:79554709-79554728 None:intergenic 15.0%
!!! ATTTCATAATTTTAAAGATG+TGG - Chr6:79554658-79554677 MsG0680034050.01.T01:CDS 15.0%
!!! ATTTTCATTTTTTAAATAGG+GGG + Chr6:79553942-79553961 None:intergenic 15.0%
!!! TATTTGTGTCTTATTTTTTT+AGG - Chr6:79554736-79554755 MsG0680034050.01.T01:intron 15.0%
!! AACTCAGAATAAATACAAAA+AGG + Chr6:79555463-79555482 None:intergenic 20.0%
!! AATAATCAATTTACACTAAG+TGG - Chr6:79555603-79555622 MsG0680034050.01.T01:intron 20.0%
!! AGATTACAATTGAAAAATAG+CGG + Chr6:79555788-79555807 None:intergenic 20.0%
!! CATGACAATTAATCTAATTA+AGG + Chr6:79555207-79555226 None:intergenic 20.0%
!! TCATTGGTAAAATATAGTTT+AGG - Chr6:79553828-79553847 MsG0680034050.01.T01:CDS 20.0%
!! TTTATGATAAACAAATGCAA+AGG - Chr6:79555681-79555700 MsG0680034050.01.T01:intron 20.0%
!! TTTGCAGATTATTTATCTTT+AGG - Chr6:79554347-79554366 MsG0680034050.01.T01:intron 20.0%
!!! CTTTGCCATTTTTTTTAATA+GGG - Chr6:79554023-79554042 MsG0680034050.01.T01:intron 20.0%
!!! GAATGAGTATAGTTTTTATT+TGG - Chr6:79553868-79553887 MsG0680034050.01.T01:CDS 20.0%
!!! GCTCACAATAATTTAAAATT+TGG - Chr6:79555645-79555664 MsG0680034050.01.T01:intron 20.0%
! AAATTAGGGCTATAAATCAT+TGG - Chr6:79553812-79553831 MsG0680034050.01.T01:CDS 25.0%
! AATTCACACACACATATATA+TGG + Chr6:79555413-79555432 None:intergenic 25.0%
! ACTAATGAAATTGACCAAAT+GGG + Chr6:79555063-79555082 None:intergenic 25.0%
! ATAAATACAAAAAGGCCAAA+TGG + Chr6:79555455-79555474 None:intergenic 25.0%
! ATTAAAAAAAATGGCAAAGG+TGG + Chr6:79554022-79554041 None:intergenic 25.0%
! ATTAAGGAATTGATATTGAG+AGG + Chr6:79555191-79555210 None:intergenic 25.0%
! CCTATTAAAAAAAATGGCAA+AGG + Chr6:79554025-79554044 None:intergenic 25.0%
! CTCTTTAATGTGATTGTATT+GGG - Chr6:79554410-79554429 MsG0680034050.01.T01:intron 25.0%
! GATTAATTGTCATGTACTAA+TGG - Chr6:79555213-79555232 MsG0680034050.01.T01:CDS 25.0%
! TACTAATGAAATTGACCAAA+TGG + Chr6:79555064-79555083 None:intergenic 25.0%
! TCTCTTTAATGTGATTGTAT+TGG - Chr6:79554409-79554428 MsG0680034050.01.T01:intron 25.0%
! TTAAGAAATTCTAACTCAGT+TGG - Chr6:79555008-79555027 MsG0680034050.01.T01:intron 25.0%
! TTCTTAGAAACTATAGAAGA+CGG + Chr6:79554572-79554591 None:intergenic 25.0%
! TTGGTCCCTATTAAAAAAAA+TGG + Chr6:79554031-79554050 None:intergenic 25.0%
! TTTATTCTGAGTTGTATTAC+AGG - Chr6:79555470-79555489 MsG0680034050.01.T01:intron 25.0%
!! TTGTTGATAAAGACATAACA+TGG - Chr6:79555556-79555575 MsG0680034050.01.T01:intron 25.0%
!!! AATTTTAAAGATGTGGACAA+TGG - Chr6:79554665-79554684 MsG0680034050.01.T01:CDS 25.0%
!!! CCTTTGCCATTTTTTTTAAT+AGG - Chr6:79554022-79554041 MsG0680034050.01.T01:intron 25.0%
!!! CGCAACATTTTAAAACTTAT+GGG + Chr6:79553912-79553931 None:intergenic 25.0%
!!! GAAGAATGATTTTGAAAAAG+TGG + Chr6:79553714-79553733 None:intergenic 25.0%
!!! GCAACATTTTAAAACTTATG+GGG + Chr6:79553911-79553930 None:intergenic 25.0%
!!! GTTTTAAAATGTTGCGATTT+TGG - Chr6:79553916-79553935 MsG0680034050.01.T01:CDS 25.0%
!!! TCGCAACATTTTAAAACTTA+TGG + Chr6:79553913-79553932 None:intergenic 25.0%
!!! TTTTTTGTCAAGTAGTATAG+TGG + Chr6:79555161-79555180 None:intergenic 25.0%
AAACCAAACATCATAATCAC+TGG + Chr6:79554309-79554328 None:intergenic 30.0%
AAACCAGTGATTATGATGTT+TGG - Chr6:79554303-79554322 MsG0680034050.01.T01:intron 30.0%
AACTACTGAAGAATATGAAG+AGG - Chr6:79554469-79554488 MsG0680034050.01.T01:intron 30.0%
AATCAATTTACACTAAGTGG+TGG - Chr6:79555606-79555625 MsG0680034050.01.T01:intron 30.0%
AGGTAGTTGTGATAATCTTA+AGG - Chr6:79554809-79554828 MsG0680034050.01.T01:intron 30.0%
ATACATTGAAAGAGATCACT+TGG - Chr6:79554914-79554933 MsG0680034050.01.T01:intron 30.0%
ATACTCATTCATCACATTCA+AGG + Chr6:79553858-79553877 None:intergenic 30.0%
CTTCAGTAGTTTCTTTCAAA+GGG + Chr6:79554460-79554479 None:intergenic 30.0%
CTTCTCAAGAATTTGATCAT+CGG - Chr6:79553677-79553696 MsG0680034050.01.T01:CDS 30.0%
GTTAGAAAATTGCATCCATT+TGG - Chr6:79555437-79555456 MsG0680034050.01.T01:intron 30.0%
TAAAAAACCCAGTTACTCTA+AGG - Chr6:79554243-79554262 MsG0680034050.01.T01:intron 30.0%
TCTTCAGTAGTTTCTTTCAA+AGG + Chr6:79554461-79554480 None:intergenic 30.0%
TGTTTCTTGGCAAATTCAAT+TGG + Chr6:79555501-79555520 None:intergenic 30.0%
! CTCTTTCAATGTATGTCTTT+TGG + Chr6:79554908-79554927 None:intergenic 30.0%
! GTTTCAAAATGTTGCGATTT+TGG + Chr6:79554050-79554069 None:intergenic 30.0%
!! GACGTCTTTTTAGCAATTTT+GGG + Chr6:79553979-79553998 None:intergenic 30.0%
!! TGACGTCTTTTTAGCAATTT+TGG + Chr6:79553980-79553999 None:intergenic 30.0%
!!! CGCAACATTTTGAAACTTAA+GGG - Chr6:79554054-79554073 MsG0680034050.01.T01:intron 30.0%
!!! TATGATGTTTGGTTTTGCAA+TGG - Chr6:79554314-79554333 MsG0680034050.01.T01:intron 30.0%
!!! TCACTTTTTATAACGTGAAG+AGG + Chr6:79555130-79555149 None:intergenic 30.0%
!!! TCGCAACATTTTGAAACTTA+AGG - Chr6:79554053-79554072 MsG0680034050.01.T01:intron 30.0%
!!! TTAGCAATTTTGGGACAAAA+GGG + Chr6:79553970-79553989 None:intergenic 30.0%
!!! TTTAGCAATTTTGGGACAAA+AGG + Chr6:79553971-79553990 None:intergenic 30.0%
AATGAAATTGACCAAATGGG+TGG + Chr6:79555060-79555079 None:intergenic 35.0%
AATTTACACTAAGTGGTGGT+TGG - Chr6:79555610-79555629 MsG0680034050.01.T01:intron 35.0%
ATGTCTTCTCACAAAACCTA+AGG + Chr6:79554213-79554232 None:intergenic 35.0%
GAATTTGATCATCGGAGTAT+TGG - Chr6:79553685-79553704 MsG0680034050.01.T01:CDS 35.0%
GACCGAAAAGAAAGTTACTT+GGG - Chr6:79554277-79554296 MsG0680034050.01.T01:intron 35.0%
GTGATTGTATTGGGTAAATG+CGG - Chr6:79554419-79554438 MsG0680034050.01.T01:intron 35.0%
TAAAGATGTGGACAATGGTT+AGG - Chr6:79554670-79554689 MsG0680034050.01.T01:CDS 35.0%
TATGAAATCTTGCATGTGCT+TGG + Chr6:79554646-79554665 None:intergenic 35.0%
TGATTGTATTGGGTAAATGC+GGG - Chr6:79554420-79554439 MsG0680034050.01.T01:intron 35.0%
TGTCTTCTCACAAAACCTAA+GGG + Chr6:79554212-79554231 None:intergenic 35.0%
! ACTTTCTTTTCGGTCGTATT+TGG + Chr6:79554272-79554291 None:intergenic 35.0%
! ATGTCTTTTGGATCACACAA+AGG + Chr6:79554896-79554915 None:intergenic 35.0%
! CTCCCAAGTAACTTTCTTTT+CGG + Chr6:79554282-79554301 None:intergenic 35.0%
! GATTTCCTCAAATTTTCAGC+AGG - Chr6:79554786-79554805 MsG0680034050.01.T01:intron 35.0%
! TTACCAGTTTTCCTTCTTGA+AGG + Chr6:79553744-79553763 None:intergenic 35.0%
!! TAGGTTTTGTGAGAAGACAT+TGG - Chr6:79554213-79554232 MsG0680034050.01.T01:intron 35.0%
!!! ATGTTTGGTTTTGCAATGGT+TGG - Chr6:79554318-79554337 MsG0680034050.01.T01:intron 35.0%
!!! TAGCAATTTTGGGACAAAAG+GGG + Chr6:79553969-79553988 None:intergenic 35.0%
!!! TGCTATTTTCTCTCTCGAAA+AGG - Chr6:79555722-79555741 MsG0680034050.01.T01:intron 35.0%
CGACCGAAAAGAAAGTTACT+TGG - Chr6:79554276-79554295 MsG0680034050.01.T01:intron 40.0%
CGAGAGAGAAAATAGCAACT+TGG + Chr6:79555719-79555738 None:intergenic 40.0%
CTCATTCATCACATTCAAGG+AGG + Chr6:79553855-79553874 None:intergenic 40.0%
CTTCAAAGTAGCCTTCAAGA+AGG - Chr6:79553730-79553749 MsG0680034050.01.T01:CDS 40.0%
GAAACTATAGAAGACGGTGA+AGG + Chr6:79554566-79554585 None:intergenic 40.0%
TACCTCCTGCTGAAAATTTG+AGG + Chr6:79554794-79554813 None:intergenic 40.0%
TAGCCTTCAAGAAGGAAAAC+TGG - Chr6:79553738-79553757 MsG0680034050.01.T01:CDS 40.0%
TTGGAAGCCTTAGAGTAACT+GGG + Chr6:79554253-79554272 None:intergenic 40.0%
TTTGGAAGCCTTAGAGTAAC+TGG + Chr6:79554254-79554273 None:intergenic 40.0%
TTTGTGAGAAGACATTGGCA+AGG - Chr6:79554218-79554237 MsG0680034050.01.T01:intron 40.0%
! TTCCTCAAATTTTCAGCAGG+AGG - Chr6:79554789-79554808 MsG0680034050.01.T01:intron 40.0%
!! ATGAGCACTCCCTATTTTGA+AGG - Chr6:79555747-79555766 MsG0680034050.01.T01:CDS 40.0%
!! GTATGACAGAAAGTACCCTT+AGG - Chr6:79554194-79554213 MsG0680034050.01.T01:intron 40.0%
!!! TTGGTTTTGCAATGGTTGGA+AGG - Chr6:79554322-79554341 MsG0680034050.01.T01:intron 40.0%
AAATTGACCAAATGGGTGGC+AGG + Chr6:79555056-79555075 None:intergenic 45.0%
ACGTCACGTGTCCCAAAAAA+AGG - Chr6:79553994-79554013 MsG0680034050.01.T01:intron 45.0%
CAAGAAACATCTGCACGTGA+TGG - Chr6:79555512-79555531 MsG0680034050.01.T01:intron 45.0%
CAGGAGATAGGAGTTTCTTG+GGG + Chr6:79555037-79555056 None:intergenic 45.0%
CATCACGTGCAGATGTTTCT+TGG + Chr6:79555514-79555533 None:intergenic 45.0%
CGTCACGTGTCCCAAAAAAA+GGG - Chr6:79553995-79554014 MsG0680034050.01.T01:intron 45.0%
GCAGGAGATAGGAGTTTCTT+GGG + Chr6:79555038-79555057 None:intergenic 45.0%
GTCACGTGTCCCAAAAAAAG+GGG - Chr6:79553996-79554015 MsG0680034050.01.T01:intron 45.0%
! AAACATCTGCACGTGATGGA+AGG - Chr6:79555516-79555535 MsG0680034050.01.T01:intron 45.0%
! GAAGACGGTGAAGGAGATTT+TGG + Chr6:79554557-79554576 None:intergenic 45.0%
!!! CAAAGGTGGCCCCTTTTTTT+GGG + Chr6:79554008-79554027 None:intergenic 45.0%
!! TAAGAAATAATATATTAAAA+TGG + Chr6:79555283-79555302 None:intergenic 5.0%
!!! AAATTTTCATTTTTTAAATA+GGG + Chr6:79553944-79553963 None:intergenic 5.0%
CTCTTACCTCGCGATGATGA+AGG + Chr6:79554533-79554552 None:intergenic 50.0%
CTTCATCATCGCGAGGTAAG+AGG - Chr6:79554531-79554550 MsG0680034050.01.T01:intron 50.0%
GGCAGGAGATAGGAGTTTCT+TGG + Chr6:79555039-79555058 None:intergenic 50.0%
! GCACGTGATGGAAGGAAGAA+AGG - Chr6:79555524-79555543 MsG0680034050.01.T01:intron 50.0%
!!! GCAAAGGTGGCCCCTTTTTT+TGG + Chr6:79554009-79554028 None:intergenic 50.0%
CCAAATGGGTGGCAGGAGAT+AGG + Chr6:79555049-79555068 None:intergenic 55.0%
CCTATCTCCTGCCACCCATT+TGG - Chr6:79555046-79555065 MsG0680034050.01.T01:intron 55.0%
GACGATCCTTCATCATCGCG+AGG - Chr6:79554524-79554543 MsG0680034050.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 79553673 79555821 79553673 ID=MsG0680034050.01;Name=MsG0680034050.01
Chr6 mRNA 79553673 79555821 79553673 ID=MsG0680034050.01.T01;Parent=MsG0680034050.01;Name=MsG0680034050.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0|0|1|0.33|0.25|4|0|277
Chr6 exon 79555735 79555821 79555735 ID=MsG0680034050.01.T01:exon:17437;Parent=MsG0680034050.01.T01
Chr6 exon 79555053 79555291 79555053 ID=MsG0680034050.01.T01:exon:17436;Parent=MsG0680034050.01.T01
Chr6 exon 79554559 79554736 79554559 ID=MsG0680034050.01.T01:exon:17435;Parent=MsG0680034050.01.T01
Chr6 exon 79553673 79554002 79553673 ID=MsG0680034050.01.T01:exon:17434;Parent=MsG0680034050.01.T01
Chr6 CDS 79555735 79555821 79555735 ID=MsG0680034050.01.T01:cds;Parent=MsG0680034050.01.T01
Chr6 CDS 79555053 79555291 79555053 ID=MsG0680034050.01.T01:cds;Parent=MsG0680034050.01.T01
Chr6 CDS 79554559 79554736 79554559 ID=MsG0680034050.01.T01:cds;Parent=MsG0680034050.01.T01
Chr6 CDS 79553673 79554002 79553673 ID=MsG0680034050.01.T01:cds;Parent=MsG0680034050.01.T01
Gene Sequence

>MsG0680034050.01.T01

ATGTCTTCTCAAGAATTTGATCATCGGAGTATTGGTCTCCACTTTTTCAAAATCATTCTTCAAAGTAGCCTTCAAGAAGGAAAACTGAAAGTACCCTTAGGTTTTGTGAGAAGACATTGGCAAGGAATAAAAAACCCAGTTACTCTAAGGCTTCCAAATACGACCGAAAAGAAAGTTACTTGGGAGAAAACCAGTGATTATGATGTTTGGTTTTGCAATGGTTGGAAGGAATTTGCAGATTATTTATCTTTAGGCGATTCACAGCTTTTGATATTTCAATATCAAGAAAATTCTCTCTTTAATGTGATTGTATTGGGTAAATGCGGGTGTTACTACTTAATTTTTTTTTTTGGTGATTTCCTCAAATTTTCAGCAGGAGGTAGTTGTGATAATCTTAAGGAGCGAAGCAAACTTTTGTACAATAAAGTGAAGAACAAATTTCACTCTAATAAGAACTTCTTCCTTTGTGTGATCCAAAAGACATACATTGAAAGAGATCACTTGGTCATACCAATTGAATTTGCCAAGAAACATCTGCACGTGATGGAAGGAAGAAAGGTTACTCTTTTTGTTGATAAAGACATAACATGGAATGTTGATTTGAATCTCACTTCAAATAATCAATTTACACTAAGTGGTGGTTGGAGTAAATTTCGAGCTCACAATAATTTAAAATTTGGTGATATCTGTGTTTTTATGATAAACAAATGCAAAGGAAAAGTTTCATTCCAAGTTGCTATTTTCTCTCTCGAAAAGGAGATGAGCACTCCCTATTTTGAAGGTAATTTATTTACTTGCCGCTATTTTTCAATTGTAATCTTTTACTTTAGATAA
Protein sequence

>MsG0680034050.01.T01

MSSQEFDHRSIGLHFFKIILQSSLQEGKLKVPLGFVRRHWQGIKNPVTLRLPNTTEKKVTWEKTSDYDVWFCNGWKEFADYLSLGDSQLLIFQYQENSLFNVIVLGKCGCYYLIFFFGDFLKFSAGGSCDNLKERSKLLYNKVKNKFHSNKNFFLCVIQKTYIERDHLVIPIEFAKKHLHVMEGRKVTLFVDKDITWNVDLNLTSNNQFTLSGGWSKFRAHNNLKFGDICVFMINKCKGKVSFQVAIFSLEKEMSTPYFEGNLFTCRYFSIVIFYFR*