AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034186.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034186.01.T01 MTR_6g460640 80.861 627 83 6 14 606 1 624 0.0 979
MsG0680034186.01.T01 MTR_6g060600 80.702 627 80 5 14 606 1 620 0.0 971
MsG0680034186.01.T01 MTR_3g010790 48.310 503 198 14 104 600 1 447 2.25e-145 431
MsG0680034186.01.T01 MTR_3g078770 55.172 290 115 5 55 336 51 333 7.34e-110 343
MsG0680034186.01.T01 MTR_5g087790 50.303 330 152 5 17 339 14 338 1.10e-109 343
MsG0680034186.01.T01 MTR_2g098470 53.184 267 114 3 45 303 27 290 7.85e-96 306
MsG0680034186.01.T01 MTR_3g087530 51.163 258 104 6 56 300 32 280 1.48e-86 276
MsG0680034186.01.T01 MTR_8g091370 47.126 261 131 4 46 300 12 271 2.10e-77 253
MsG0680034186.01.T01 MTR_6g060630 68.208 173 30 3 458 605 35 207 4.16e-66 215
MsG0680034186.01.T01 MTR_1g024420 83.810 105 9 1 50 146 4 108 6.46e-54 179
MsG0680034186.01.T01 MTR_7g095580 47.692 65 34 0 93 157 1 65 5.72e-17 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034186.01.T01 AT3G20770 54.181 299 129 3 44 336 37 333 2.16e-106 335
MsG0680034186.01.T01 AT2G27050 56.618 272 110 2 44 307 36 307 1.16e-105 331
MsG0680034186.01.T01 AT1G73730 51.493 268 117 3 44 303 14 276 1.54e-91 293
MsG0680034186.01.T01 AT1G73730 51.493 268 117 3 44 303 26 288 2.13e-91 293
MsG0680034186.01.T01 AT5G10120 49.615 260 123 3 49 300 16 275 1.65e-87 280
MsG0680034186.01.T01 AT5G65100 46.263 281 119 7 51 304 33 308 1.14e-79 262
MsG0680034186.01.T01 AT5G21120 43.729 295 148 6 61 337 53 347 2.41e-74 247
MsG0680034186.01.T01 AT5G21120 43.729 295 148 6 61 337 53 347 2.41e-74 247
MsG0680034186.01.T01 AT5G21120 43.729 295 148 6 61 337 60 354 2.66e-74 247

Find 117 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATGGTTGTTTCCTTAA+TGG 0.114788 6:+82906798 None:intergenic
CAAATCCAGCCATTTGAAAT+TGG 0.195986 6:+82906404 None:intergenic
TTCAGCAATTCGAATGTAAT+TGG 0.211719 6:+82907126 None:intergenic
TTCTCACATTTCTCTCTTGC+TGG 0.213662 6:+82906491 None:intergenic
CGGAGATTTCCATTGGAAAA+AGG 0.266811 6:-82907036 MsG0680034186.01.T01:CDS
GCTAAATATGAAGCAGAAAA+TGG 0.280618 6:-82907186 MsG0680034186.01.T01:CDS
ACAAGATAAACTCACCATTA+AGG 0.283993 6:-82906812 MsG0680034186.01.T01:CDS
CCATTTGAGGCTGCATGTTT+TGG 0.297794 6:+82905062 None:intergenic
AGATCATGAGGCTTTCTATA+AGG 0.298040 6:+82906934 None:intergenic
CTTTGATTGACACCGTGATT+TGG 0.301125 6:+82905298 None:intergenic
AACAATGCAAAACAAGAAAA+AGG 0.304941 6:-82907810 MsG0680034186.01.T01:CDS
CTTGTTGACCATAGAAATTT+TGG 0.306348 6:+82905038 None:intergenic
CTTGTTCTGTTGAACACTTC+CGG 0.312860 6:+82905255 None:intergenic
ATGCATTCCAATGTTTATAA+TGG 0.315010 6:-82907867 MsG0680034186.01.T01:CDS
ATGAACATGGTTTCAACTTC+CGG 0.329437 6:-82905091 MsG0680034186.01.T01:CDS
TTCCTAATCTTCTGAATGTT+AGG 0.342602 6:+82906859 None:intergenic
GATCATGAGGCTTTCTATAA+GGG 0.348589 6:+82906935 None:intergenic
CCTCCACCATGGTGGCCAAC+TGG 0.352128 6:-82907009 MsG0680034186.01.T01:CDS
GGTTTGGAAGGTTTATGTTT+TGG 0.353709 6:-82906905 MsG0680034186.01.T01:CDS
TTTGAAGCTTCTCCCCTTGA+AGG 0.355072 6:+82907831 None:intergenic
GATGCTCGTGGCTTCATCTA+TGG 0.357885 6:-82907312 MsG0680034186.01.T01:CDS
ATTGCTTGCATTGGAACATT+AGG 0.367412 6:+82904983 None:intergenic
GCGGCACTAATGATGATAGA+AGG 0.375221 6:+82907076 None:intergenic
GTTGAAACCATGTTCATAAC+TGG 0.381589 6:+82905097 None:intergenic
TGATAGAAGGGAACTTAATA+TGG 0.382620 6:+82907089 None:intergenic
GTGCACAAGAGCGTGTATTA+AGG 0.383295 6:-82907623 MsG0680034186.01.T01:intron
GAACACTTGCATGGTAGATT+TGG 0.390194 6:+82905353 None:intergenic
AACAACCAATTTCAAATGGC+TGG 0.404663 6:-82906409 MsG0680034186.01.T01:CDS
CAAATGGACCAAAATTTCTA+TGG 0.408363 6:-82905046 MsG0680034186.01.T01:CDS
CCAAAACATGCAGCCTCAAA+TGG 0.412132 6:-82905062 MsG0680034186.01.T01:CDS
ATGAGATTTAGTGAAGATCT+TGG 0.413274 6:-82906964 MsG0680034186.01.T01:CDS
CTCCTAACATTCAGAAGATT+AGG 0.416065 6:-82906861 MsG0680034186.01.T01:CDS
ATCATCGTCATCGTCATATG+AGG 0.416418 6:-82906590 MsG0680034186.01.T01:CDS
GTGCTATCGCTAACCCTTCA+AGG 0.426255 6:-82907845 MsG0680034186.01.T01:CDS
CTACCATGCAAGTGTTCAAC+AGG 0.437195 6:-82905347 MsG0680034186.01.T01:CDS
CTCATGATCTGAAGAAGGTT+TGG 0.440824 6:-82906921 MsG0680034186.01.T01:CDS
AAGAGACAACACTACATCAT+TGG 0.447664 6:-82907673 MsG0680034186.01.T01:CDS
AACAAGAGAAAGCGTGTACT+TGG 0.454094 6:-82906562 MsG0680034186.01.T01:CDS
CCATTAAGGAAACAACCATT+TGG 0.457496 6:-82906798 MsG0680034186.01.T01:CDS
CAGGCACATGTTAAAGATGA+TGG 0.466945 6:-82907343 MsG0680034186.01.T01:CDS
CACCATGATTCTTTCCCAGT+TGG 0.468071 6:+82906994 None:intergenic
TTGTCTGATGAACCACTCAT+TGG 0.468990 6:+82907267 None:intergenic
CGACAACAACCAATTTCAAA+TGG 0.471802 6:-82906413 MsG0680034186.01.T01:CDS
GTTGTCGTTGTTGTTGATGT+TGG 0.474985 6:+82906429 None:intergenic
GAACACCATCATGAGTACTA+TGG 0.478356 6:-82905233 MsG0680034186.01.T01:CDS
AATCAGATCATTCATCATAC+AGG 0.485290 6:-82906313 MsG0680034186.01.T01:intron
ACGTGTGCAAGCTGCGGTAC+CGG 0.490700 6:-82906341 MsG0680034186.01.T01:CDS
ACAAATTATGAAAAGTTGAA+TGG 0.493728 6:-82907153 MsG0680034186.01.T01:CDS
CATCAGACAATTTACGAGGC+TGG 0.493913 6:-82907254 MsG0680034186.01.T01:CDS
TGTTGAGGTATTGCTTGCAT+TGG 0.494577 6:+82904974 None:intergenic
CTCCACCATGGTGGCCAACT+GGG 0.496691 6:-82907008 MsG0680034186.01.T01:CDS
ATTAATAATAGCAAACCAAA+TGG 0.502082 6:+82906783 None:intergenic
AAGGGAACTTAATATGGTAT+CGG 0.502090 6:+82907095 None:intergenic
CAAAATTTCTATGGTCAACA+AGG 0.508752 6:-82905037 MsG0680034186.01.T01:CDS
TCTTTCCCAGTTGGCCACCA+TGG 0.508797 6:+82907003 None:intergenic
AGGGAACTTAATATGGTATC+GGG 0.509697 6:+82907096 None:intergenic
CCAGTTGGCCACCATGGTGG+AGG 0.511934 6:+82907009 None:intergenic
AATGGAAATCTCCGTTGTGG+TGG 0.514931 6:+82907045 None:intergenic
TTGAAGCTTCTCCCCTTGAA+GGG 0.515863 6:+82907832 None:intergenic
ACCACAACGGAGATTTCCAT+TGG 0.522988 6:-82907043 MsG0680034186.01.T01:CDS
TGAATCAAAGGTTGTTGTTG+AGG 0.525190 6:+82904959 None:intergenic
TTATGATTAACACCGGGAGT+TGG 0.525458 6:+82905385 None:intergenic
CAAACCTTCTTCAGATCATG+AGG 0.527892 6:+82906922 None:intergenic
CACTTGCATGGTAGATTTGG+TGG 0.539023 6:+82905356 None:intergenic
TCTCCTGTTGAACACTTGCA+TGG 0.543277 6:+82905344 None:intergenic
TGATCTGAAGAAGGTTTGGA+AGG 0.544263 6:-82906917 MsG0680034186.01.T01:CDS
CTCATTGGTTTGCCCTCGTG+AGG 0.546764 6:+82907282 None:intergenic
TCATATTTAGCAATTGCCGC+TGG 0.547452 6:+82907198 None:intergenic
GGCCAACTGGGAAAGAATCA+TGG 0.559080 6:-82906996 MsG0680034186.01.T01:CDS
ATGATCAAAAGATGAATCAA+AGG 0.559551 6:+82904947 None:intergenic
GCTTGCACACGTTGGTCAAG+AGG 0.560353 6:+82906352 None:intergenic
TGAATGATCTGATTTGCAAC+CGG 0.563371 6:+82906322 None:intergenic
TTCCCAGTTGGCCACCATGG+TGG 0.564701 6:+82907006 None:intergenic
TCCAATGGAAATCTCCGTTG+TGG 0.567968 6:+82907042 None:intergenic
CATCATTGAACTATTCATCA+TGG 0.573478 6:+82905132 None:intergenic
AAAGCCTCATGATCTGAAGA+AGG 0.573569 6:-82906926 MsG0680034186.01.T01:CDS
TGCTATCGCTAACCCTTCAA+GGG 0.574060 6:-82907844 MsG0680034186.01.T01:CDS
AAGTAATTATGTGCTTGTTG+AGG 0.574583 6:-82906692 MsG0680034186.01.T01:CDS
TTCAATGCCAGTTATGAACA+TGG 0.587129 6:-82905104 MsG0680034186.01.T01:CDS
ATCATGAGGCTTTCTATAAG+GGG 0.587351 6:+82906936 None:intergenic
CGGCACTAATGATGATAGAA+GGG 0.589144 6:+82907077 None:intergenic
CACTTTACTAGTACACAACT+AGG 0.591972 6:-82906460 MsG0680034186.01.T01:CDS
ACACTACATCATTGGAACAA+AGG 0.595301 6:-82907665 MsG0680034186.01.T01:CDS
ATGGAAATCTCCGTTGTGGT+GGG 0.597513 6:+82907046 None:intergenic
CTATGGAGTAATACCTCACG+AGG 0.599594 6:-82907295 MsG0680034186.01.T01:CDS
ACAAAGGAAAAGAAAGACAA+TGG 0.610942 6:-82907649 MsG0680034186.01.T01:CDS
GCTAACTATTGAGGAACTAG+AGG 0.611138 6:-82907751 MsG0680034186.01.T01:CDS
GATAGCACCATTATAAACAT+TGG 0.611287 6:+82907860 None:intergenic
GTGCATGTTATGATTAACAC+CGG 0.611942 6:+82905378 None:intergenic
AGTACGATGATTCCAACTCC+CGG 0.614991 6:-82905397 MsG0680034186.01.T01:CDS
GGAACATTGTCAAACAGTCA+AGG 0.625113 6:-82906840 MsG0680034186.01.T01:CDS
GACGATGACGATGATGATGA+TGG 0.627984 6:+82906598 None:intergenic
CAGACAATTTACGAGGCTGG+TGG 0.628174 6:-82907251 MsG0680034186.01.T01:CDS
TCATCGTCATCGTCATATGA+GGG 0.630319 6:-82906589 MsG0680034186.01.T01:CDS
AAAATTTCTATGGTCAACAA+GGG 0.632348 6:-82905036 MsG0680034186.01.T01:CDS
AAATTTCTATGGTCAACAAG+GGG 0.633963 6:-82905035 MsG0680034186.01.T01:CDS
TGGAACCATAGTACTCATGA+TGG 0.638379 6:+82905228 None:intergenic
TGGAATTCATGTTGATCAAG+AGG 0.645230 6:+82906511 None:intergenic
TGGAATCATCGTACTCATGA+CGG 0.645856 6:+82905405 None:intergenic
CGTTGTGGTGGGTCGCAATG+CGG 0.647311 6:+82907057 None:intergenic
AGTACTATGATTCCAAATCA+CGG 0.648005 6:-82905310 MsG0680034186.01.T01:CDS
CGCATTGCGACCCACCACAA+CGG 0.648689 6:-82907056 MsG0680034186.01.T01:CDS
ATGGAAGTTTGTGATGCTCG+TGG 0.649462 6:-82907324 MsG0680034186.01.T01:CDS
TGACCAACGTGTGCAAGCTG+CGG 0.662625 6:-82906347 MsG0680034186.01.T01:CDS
ATGCATCGTCAAATCTACAC+CGG 0.672329 6:-82905274 MsG0680034186.01.T01:CDS
CACGAGGGCAAACCAATGAG+TGG 0.675933 6:-82907279 MsG0680034186.01.T01:CDS
TCATGAGGCTTTCTATAAGG+GGG 0.678672 6:+82906937 None:intergenic
AATTTCTATGGTCAACAAGG+GGG 0.688284 6:-82905034 MsG0680034186.01.T01:CDS
TGCATGTTATGATTAACACC+GGG 0.698948 6:+82905379 None:intergenic
GCTATCGCTAACCCTTCAAG+GGG 0.702578 6:-82907843 MsG0680034186.01.T01:CDS
AAGGCATTCCTCCACCATGG+TGG 0.706316 6:-82907017 MsG0680034186.01.T01:CDS
ACACTTGAAGTGTAGACTTG+AGG 0.709845 6:+82905178 None:intergenic
CAAGTGTTCATGAACAACAG+AGG 0.720196 6:-82905162 MsG0680034186.01.T01:CDS
GGTTCATCAGACAATTTACG+AGG 0.727611 6:-82907258 MsG0680034186.01.T01:CDS
GTACCGCAGCTTGCACACGT+TGG 0.738322 6:+82906344 None:intergenic
CAACTGGGAAAGAATCATGG+TGG 0.757558 6:-82906993 MsG0680034186.01.T01:CDS
TATGGAGTAATACCTCACGA+GGG 0.784582 6:-82907294 MsG0680034186.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGGTATTTTTATTTAAAT+AGG - Chr6:82906726-82906745 MsG0680034186.01.T01:CDS 10.0%
!! CTACTTCATTATATATTATT+TGG - Chr6:82907020-82907039 MsG0680034186.01.T01:CDS 15.0%
!! TCTTAATTATTATGAATTGT+AGG + Chr6:82906858-82906877 None:intergenic 15.0%
!!! TAAATGATATATTAGCTTAT+AGG - Chr6:82906675-82906694 MsG0680034186.01.T01:CDS 15.0%
!! ACAAATTATGAAAAGTTGAA+TGG - Chr6:82905696-82905715 MsG0680034186.01.T01:intron 20.0%
!! ATAGGAAAATGTTAGATTAT+AGG - Chr6:82906744-82906763 MsG0680034186.01.T01:CDS 20.0%
!! ATAGTTAAATTCGACAAAAA+CGG - Chr6:82905627-82905646 MsG0680034186.01.T01:intron 20.0%
!! ATTAATAATAGCAAACCAAA+TGG + Chr6:82906069-82906088 None:intergenic 20.0%
!! GATTCAAATCTCATTTAAAA+CGG + Chr6:82905360-82905379 None:intergenic 20.0%
! AAAATTTCTATGGTCAACAA+GGG - Chr6:82907813-82907832 MsG0680034186.01.T01:CDS 25.0%
! AACAATGCAAAACAAGAAAA+AGG - Chr6:82905039-82905058 MsG0680034186.01.T01:CDS 25.0%
! AAGCTAACATTATTGTAAGA+TGG + Chr6:82906819-82906838 None:intergenic 25.0%
! ATGATCAAAAGATGAATCAA+AGG + Chr6:82907905-82907924 None:intergenic 25.0%
! ATGCATTCCAATGTTTATAA+TGG - Chr6:82904982-82905001 MsG0680034186.01.T01:CDS 25.0%
! GATTCAAGTCATAAATCAAA+TGG + Chr6:82906634-82906653 None:intergenic 25.0%
! GTAAAGTTCTCAAAATCTTA+TGG + Chr6:82905439-82905458 None:intergenic 25.0%
! TAAACAAATGAATAAGTGTG+TGG + Chr6:82906585-82906604 None:intergenic 25.0%
! TCAAAACTTGAGAAAAATTC+AGG + Chr6:82906122-82906141 None:intergenic 25.0%
! TGCTTGTTTCAAACTTAAAA+AGG - Chr6:82906708-82906727 MsG0680034186.01.T01:CDS 25.0%
!! ACAATTTGTTTATGAATCTG+GGG - Chr6:82906914-82906933 MsG0680034186.01.T01:CDS 25.0%
!! CACAATTTGTTTATGAATCT+GGG - Chr6:82906913-82906932 MsG0680034186.01.T01:CDS 25.0%
!! TAGATTATAGGTCTCAATTT+TGG - Chr6:82906756-82906775 MsG0680034186.01.T01:CDS 25.0%
!! TCACAATTTGTTTATGAATC+TGG - Chr6:82906912-82906931 MsG0680034186.01.T01:CDS 25.0%
!!! CCAGAATTATTTTTCTTTTG+GGG + Chr6:82906974-82906993 None:intergenic 25.0%
!!! GCCAGAATTATTTTTCTTTT+GGG + Chr6:82906975-82906994 None:intergenic 25.0%
!!! TGCCAGAATTATTTTTCTTT+TGG + Chr6:82906976-82906995 None:intergenic 25.0%
AAATTTCTATGGTCAACAAG+GGG - Chr6:82907814-82907833 MsG0680034186.01.T01:CDS 30.0%
AAGGGAACTTAATATGGTAT+CGG + Chr6:82905757-82905776 None:intergenic 30.0%
AATCAGATCATTCATCATAC+AGG - Chr6:82906536-82906555 MsG0680034186.01.T01:CDS 30.0%
AATGCTGCTAAAAAAGATGA+AGG - Chr6:82905140-82905159 MsG0680034186.01.T01:CDS 30.0%
ACAAAGGAAAAGAAAGACAA+TGG - Chr6:82905200-82905219 MsG0680034186.01.T01:CDS 30.0%
ACAAGAAAAAGGAAAGGAAA+AGG - Chr6:82905050-82905069 MsG0680034186.01.T01:CDS 30.0%
ACAAGATAAACTCACCATTA+AGG - Chr6:82906037-82906056 MsG0680034186.01.T01:intron 30.0%
AGTAATTACCTGCATTGTTA+TGG + Chr6:82907356-82907375 None:intergenic 30.0%
AGTACTATGATTCCAAATCA+CGG - Chr6:82907539-82907558 MsG0680034186.01.T01:intron 30.0%
ATGAGATTTAGTGAAGATCT+TGG - Chr6:82905885-82905904 MsG0680034186.01.T01:intron 30.0%
ATTCATCATACAGGTAATCA+TGG - Chr6:82906545-82906564 MsG0680034186.01.T01:CDS 30.0%
CAAAATTTCTATGGTCAACA+AGG - Chr6:82907812-82907831 MsG0680034186.01.T01:CDS 30.0%
CAAATGGACCAAAATTTCTA+TGG - Chr6:82907803-82907822 MsG0680034186.01.T01:CDS 30.0%
CATCATTGAACTATTCATCA+TGG + Chr6:82907720-82907739 None:intergenic 30.0%
CCCCAAAAGAAAAATAATTC+TGG - Chr6:82906971-82906990 MsG0680034186.01.T01:CDS 30.0%
GAAAAAAGAGCTAACTATTG+AGG - Chr6:82905089-82905108 MsG0680034186.01.T01:CDS 30.0%
GATAGCACCATTATAAACAT+TGG + Chr6:82904992-82905011 None:intergenic 30.0%
GCTAAATATGAAGCAGAAAA+TGG - Chr6:82905663-82905682 MsG0680034186.01.T01:intron 30.0%
TGATAGAAGGGAACTTAATA+TGG + Chr6:82905763-82905782 None:intergenic 30.0%
TGCAAAACAAGAAAAAGGAA+AGG - Chr6:82905044-82905063 MsG0680034186.01.T01:CDS 30.0%
TTCAGCAATTCGAATGTAAT+TGG + Chr6:82905726-82905745 None:intergenic 30.0%
TTCCTAATCTTCTGAATGTT+AGG + Chr6:82905993-82906012 None:intergenic 30.0%
! AAGCTAACACAATTTTTACG+AGG + Chr6:82907312-82907331 None:intergenic 30.0%
! AAGTAATTATGTGCTTGTTG+AGG - Chr6:82906157-82906176 MsG0680034186.01.T01:intron 30.0%
! AGCTAACACAATTTTTACGA+GGG + Chr6:82907311-82907330 None:intergenic 30.0%
! CTTGTTGACCATAGAAATTT+TGG + Chr6:82907814-82907833 None:intergenic 30.0%
! GCTACTTCAAACAATTTTGT+TGG - Chr6:82907042-82907061 MsG0680034186.01.T01:CDS 30.0%
! TTGATGGACGTATATAATTC+AGG - Chr6:82907401-82907420 MsG0680034186.01.T01:intron 30.0%
!! AATGATTTTGATGTTGTGGA+AGG - Chr6:82906182-82906201 MsG0680034186.01.T01:intron 30.0%
!! GGAAAATGATTTTGATGTTG+TGG - Chr6:82906178-82906197 MsG0680034186.01.T01:intron 30.0%
!! TAGAAATTTTGGTCCATTTG+AGG + Chr6:82907803-82907822 None:intergenic 30.0%
!! TGACTCATGCTTTAGAAAAT+AGG - Chr6:82906880-82906899 MsG0680034186.01.T01:CDS 30.0%
!! TTTTGAGAACTTTACCTTTG+AGG - Chr6:82905444-82905463 MsG0680034186.01.T01:intron 30.0%
!! TTTTGATTAACACTAGGAGT+TGG + Chr6:82907644-82907663 None:intergenic 30.0%
!!! AGTTTTGATTCTTGTGTTGA+AGG - Chr6:82906134-82906153 MsG0680034186.01.T01:intron 30.0%
!!! TGCAAGTTTTGATTAACACT+AGG + Chr6:82907650-82907669 None:intergenic 30.0%
AACAACCAATTTCAAATGGC+TGG - Chr6:82906440-82906459 MsG0680034186.01.T01:CDS 35.0%
AACAATGCAGGTAATTACTC+AGG - Chr6:82907357-82907376 MsG0680034186.01.T01:intron 35.0%
AAGAGACAACACTACATCAT+TGG - Chr6:82905176-82905195 MsG0680034186.01.T01:CDS 35.0%
AATTTCTATGGTCAACAAGG+GGG - Chr6:82907815-82907834 MsG0680034186.01.T01:CDS 35.0%
ACACTACATCATTGGAACAA+AGG - Chr6:82905184-82905203 MsG0680034186.01.T01:CDS 35.0%
AGATCATGAGGCTTTCTATA+AGG + Chr6:82905918-82905937 None:intergenic 35.0%
AGGGAACTTAATATGGTATC+GGG + Chr6:82905756-82905775 None:intergenic 35.0%
ATCATGAGGCTTTCTATAAG+GGG + Chr6:82905916-82905935 None:intergenic 35.0%
ATGAACATGGTTTCAACTTC+CGG - Chr6:82907758-82907777 MsG0680034186.01.T01:CDS 35.0%
ATTGCTTGCATTGGAACATT+AGG + Chr6:82907869-82907888 None:intergenic 35.0%
CAAGATCACAAGTTAACTCA+TGG - Chr6:82905401-82905420 MsG0680034186.01.T01:CDS 35.0%
CACTTTACTAGTACACAACT+AGG - Chr6:82906389-82906408 MsG0680034186.01.T01:CDS 35.0%
CCATTAAGGAAACAACCATT+TGG - Chr6:82906051-82906070 MsG0680034186.01.T01:intron 35.0%
CGACAACAACCAATTTCAAA+TGG - Chr6:82906436-82906455 MsG0680034186.01.T01:CDS 35.0%
CTCCTAACATTCAGAAGATT+AGG - Chr6:82905988-82906007 MsG0680034186.01.T01:intron 35.0%
GATCATGAGGCTTTCTATAA+GGG + Chr6:82905917-82905936 None:intergenic 35.0%
GTGCATGTTATGATTAACAC+CGG + Chr6:82907474-82907493 None:intergenic 35.0%
GTTGAAACCATGTTCATAAC+TGG + Chr6:82907755-82907774 None:intergenic 35.0%
TATGGATTCCATAACAATGC+AGG - Chr6:82907345-82907364 MsG0680034186.01.T01:intron 35.0%
TGCATGTTATGATTAACACC+GGG + Chr6:82907473-82907492 None:intergenic 35.0%
TGGAATTCATGTTGATCAAG+AGG + Chr6:82906341-82906360 None:intergenic 35.0%
TTCAATGCCAGTTATGAACA+TGG - Chr6:82907745-82907764 MsG0680034186.01.T01:CDS 35.0%
! CAAATCCAGCCATTTGAAAT+TGG + Chr6:82906448-82906467 None:intergenic 35.0%
! CCAAATGGTTGTTTCCTTAA+TGG + Chr6:82906054-82906073 None:intergenic 35.0%
! CTAACACAATTTTTACGAGG+GGG + Chr6:82907309-82907328 None:intergenic 35.0%
! GCTAACACAATTTTTACGAG+GGG + Chr6:82907310-82907329 None:intergenic 35.0%
! GGTTTGGAAGGTTTATGTTT+TGG - Chr6:82905944-82905963 MsG0680034186.01.T01:intron 35.0%
! TGAATCAAAGGTTGTTGTTG+AGG + Chr6:82907893-82907912 None:intergenic 35.0%
! TGAATGATCTGATTTGCAAC+CGG + Chr6:82906530-82906549 None:intergenic 35.0%
! TTGACTTTGTTTCACCTCAA+AGG + Chr6:82905461-82905480 None:intergenic 35.0%
!! CTCATGACGGTGTTTTTATT+CGG + Chr6:82907434-82907453 None:intergenic 35.0%
!!! CTGCATGTTTTGGTTAAATC+CGG + Chr6:82907780-82907799 None:intergenic 35.0%
AAAGCCTCATGATCTGAAGA+AGG - Chr6:82905923-82905942 MsG0680034186.01.T01:intron 40.0%
AACATGTGCCTGTTCACATT+AGG + Chr6:82905498-82905517 None:intergenic 40.0%
AATGCAGGTAATTACTCAGG+AGG - Chr6:82907360-82907379 MsG0680034186.01.T01:intron 40.0%
ACACTTGAAGTGTAGACTTG+AGG + Chr6:82907674-82907693 None:intergenic 40.0%
AGCTAACACCTAATGTGAAC+AGG - Chr6:82905487-82905506 MsG0680034186.01.T01:intron 40.0%
ATCATCGTCATCGTCATATG+AGG - Chr6:82906259-82906278 MsG0680034186.01.T01:intron 40.0%
ATGCATCGTCAAATCTACAC+CGG - Chr6:82907575-82907594 MsG0680034186.01.T01:intron 40.0%
ATGGAATCCATAATCAGCAG+CGG + Chr6:82907337-82907356 None:intergenic 40.0%
CAAACCTTCTTCAGATCATG+AGG + Chr6:82905930-82905949 None:intergenic 40.0%
CAAATGAATAAGTGTGTGGC+TGG + Chr6:82906581-82906600 None:intergenic 40.0%
CAAGTGTTCATGAACAACAG+AGG - Chr6:82907687-82907706 MsG0680034186.01.T01:CDS 40.0%
CAGGCACATGTTAAAGATGA+TGG - Chr6:82905506-82905525 MsG0680034186.01.T01:intron 40.0%
CGGAGATTTCCATTGGAAAA+AGG - Chr6:82905813-82905832 MsG0680034186.01.T01:intron 40.0%
CGGCACTAATGATGATAGAA+GGG + Chr6:82905775-82905794 None:intergenic 40.0%
CTCATGATCTGAAGAAGGTT+TGG - Chr6:82905928-82905947 MsG0680034186.01.T01:intron 40.0%
CTTGTTCTGTTGAACACTTC+CGG + Chr6:82907597-82907616 None:intergenic 40.0%
CTTTGATTGACACCGTGATT+TGG + Chr6:82907554-82907573 None:intergenic 40.0%
GAACACCATCATGAGTACTA+TGG - Chr6:82907616-82907635 MsG0680034186.01.T01:intron 40.0%
GAACACTTGCATGGTAGATT+TGG + Chr6:82907499-82907518 None:intergenic 40.0%
GATTTGAATCCTGTCTCTTG+AGG - Chr6:82905370-82905389 MsG0680034186.01.T01:CDS 40.0%
GCTAACTATTGAGGAACTAG+AGG - Chr6:82905098-82905117 MsG0680034186.01.T01:CDS 40.0%
GGAACATTGTCAAACAGTCA+AGG - Chr6:82906009-82906028 MsG0680034186.01.T01:intron 40.0%
GGTGAATCCTTCACATCAAT+GGG - Chr6:82906935-82906954 MsG0680034186.01.T01:CDS 40.0%
GGTTCATCAGACAATTTACG+AGG - Chr6:82905591-82905610 MsG0680034186.01.T01:intron 40.0%
GTGAATCCTTCACATCAATG+GGG - Chr6:82906936-82906955 MsG0680034186.01.T01:CDS 40.0%
TATGGAGTAATACCTCACGA+GGG - Chr6:82905555-82905574 MsG0680034186.01.T01:intron 40.0%
TCATATTTAGCAATTGCCGC+TGG + Chr6:82905654-82905673 None:intergenic 40.0%
TCATCGTCATCGTCATATGA+GGG - Chr6:82906260-82906279 MsG0680034186.01.T01:intron 40.0%
TCATGAGGCTTTCTATAAGG+GGG + Chr6:82905915-82905934 None:intergenic 40.0%
TGATCTGAAGAAGGTTTGGA+AGG - Chr6:82905932-82905951 MsG0680034186.01.T01:intron 40.0%
TGGAACCATAGTACTCATGA+TGG + Chr6:82907624-82907643 None:intergenic 40.0%
TGGAATCATCGTACTCATGA+CGG + Chr6:82907447-82907466 None:intergenic 40.0%
TTATGATTAACACCGGGAGT+TGG + Chr6:82907467-82907486 None:intergenic 40.0%
TTCTCACATTTCTCTCTTGC+TGG + Chr6:82906361-82906380 None:intergenic 40.0%
TTGTCTGATGAACCACTCAT+TGG + Chr6:82905585-82905604 None:intergenic 40.0%
! AACAAGAGAAAGCGTGTACT+TGG - Chr6:82906287-82906306 MsG0680034186.01.T01:intron 40.0%
! GAGAGTGGTTTCTGATTTGA+TGG - Chr6:82907385-82907404 MsG0680034186.01.T01:intron 40.0%
! GTTGTCGTTGTTGTTGATGT+TGG + Chr6:82906423-82906442 None:intergenic 40.0%
!! GATTTTGATGTTGTGGAAGG+CGG - Chr6:82906185-82906204 MsG0680034186.01.T01:intron 40.0%
!! TGTTGAGGTATTGCTTGCAT+TGG + Chr6:82907878-82907897 None:intergenic 40.0%
AATGGAAATCTCCGTTGTGG+TGG + Chr6:82905807-82905826 None:intergenic 45.0%
ACCACAACGGAGATTTCCAT+TGG - Chr6:82905806-82905825 MsG0680034186.01.T01:intron 45.0%
AGTACGATGATTCCAACTCC+CGG - Chr6:82907452-82907471 MsG0680034186.01.T01:intron 45.0%
ATGCTACCCCATTGATGTGA+AGG + Chr6:82906945-82906964 None:intergenic 45.0%
ATGGAAATCTCCGTTGTGGT+GGG + Chr6:82905806-82905825 None:intergenic 45.0%
ATGGAAGTTTGTGATGCTCG+TGG - Chr6:82905525-82905544 MsG0680034186.01.T01:intron 45.0%
ATTCGACAAAAACGGTCCAG+CGG - Chr6:82905635-82905654 MsG0680034186.01.T01:intron 45.0%
CAACTGGGAAAGAATCATGG+TGG - Chr6:82905856-82905875 MsG0680034186.01.T01:intron 45.0%
CACCATGATTCTTTCCCAGT+TGG + Chr6:82905858-82905877 None:intergenic 45.0%
CACTTGCATGGTAGATTTGG+TGG + Chr6:82907496-82907515 None:intergenic 45.0%
CATCAGACAATTTACGAGGC+TGG - Chr6:82905595-82905614 MsG0680034186.01.T01:intron 45.0%
CCAAAACATGCAGCCTCAAA+TGG - Chr6:82907787-82907806 MsG0680034186.01.T01:CDS 45.0%
CTACCATGCAAGTGTTCAAC+AGG - Chr6:82907502-82907521 MsG0680034186.01.T01:intron 45.0%
CTATGGAGTAATACCTCACG+AGG - Chr6:82905554-82905573 MsG0680034186.01.T01:intron 45.0%
GCGGCACTAATGATGATAGA+AGG + Chr6:82905776-82905795 None:intergenic 45.0%
GGGTGAATCCTTCACATCAA+TGG - Chr6:82906934-82906953 MsG0680034186.01.T01:CDS 45.0%
TCACATCAATGGGGTAGCAT+TGG - Chr6:82906945-82906964 MsG0680034186.01.T01:CDS 45.0%
TCCAATGGAAATCTCCGTTG+TGG + Chr6:82905810-82905829 None:intergenic 45.0%
TCTCCTGTTGAACACTTGCA+TGG + Chr6:82907508-82907527 None:intergenic 45.0%
TGCTATCGCTAACCCTTCAA+GGG - Chr6:82905005-82905024 MsG0680034186.01.T01:CDS 45.0%
TTGAAGCTTCTCCCCTTGAA+GGG + Chr6:82905020-82905039 None:intergenic 45.0%
! GACGATGACGATGATGATGA+TGG + Chr6:82906254-82906273 None:intergenic 45.0%
! GGAGGAATGCCTTTTTCCAA+TGG + Chr6:82905825-82905844 None:intergenic 45.0%
! GTGCACAAGAGCGTGTATTA+AGG - Chr6:82905226-82905245 MsG0680034186.01.T01:CDS 45.0%
! TTTGAAGCTTCTCCCCTTGA+AGG + Chr6:82905021-82905040 None:intergenic 45.0%
!! AAAAAGGCATTCCTCCACCA+TGG - Chr6:82905829-82905848 MsG0680034186.01.T01:intron 45.0%
!! CCATTTGAGGCTGCATGTTT+TGG + Chr6:82907790-82907809 None:intergenic 45.0%
!!! ATATTTTATTTTTCTATATT+TGG - Chr6:82907283-82907302 MsG0680034186.01.T01:CDS 5.0%
!!! ATTTTATTTTTATTTTAACT+AGG - Chr6:82905254-82905273 MsG0680034186.01.T01:CDS 5.0%
ATTACTCAGGAGGAGGAGAG+TGG - Chr6:82907370-82907389 MsG0680034186.01.T01:intron 50.0%
CAGACAATTTACGAGGCTGG+TGG - Chr6:82905598-82905617 MsG0680034186.01.T01:intron 50.0%
GACTACTTGCCTCAAGAGAC+AGG + Chr6:82905382-82905401 None:intergenic 50.0%
GATGCTCGTGGCTTCATCTA+TGG - Chr6:82905537-82905556 MsG0680034186.01.T01:intron 50.0%
GCAGGTAATTACTCAGGAGG+AGG - Chr6:82907363-82907382 MsG0680034186.01.T01:intron 50.0%
GCTATCGCTAACCCTTCAAG+GGG - Chr6:82905006-82905025 MsG0680034186.01.T01:CDS 50.0%
GGCCAACTGGGAAAGAATCA+TGG - Chr6:82905853-82905872 MsG0680034186.01.T01:intron 50.0%
GTGCTATCGCTAACCCTTCA+AGG - Chr6:82905004-82905023 MsG0680034186.01.T01:CDS 50.0%
CACGAGGGCAAACCAATGAG+TGG - Chr6:82905570-82905589 MsG0680034186.01.T01:intron 55.0%
GCTTGCACACGTTGGTCAAG+AGG + Chr6:82906500-82906519 None:intergenic 55.0%
TCTTTCCCAGTTGGCCACCA+TGG + Chr6:82905849-82905868 None:intergenic 55.0%
TGACCAACGTGTGCAAGCTG+CGG - Chr6:82906502-82906521 MsG0680034186.01.T01:CDS 55.0%
! AAGGCATTCCTCCACCATGG+TGG - Chr6:82905832-82905851 MsG0680034186.01.T01:intron 55.0%
! AGCTTCGCCGCTGCTGATTA+TGG - Chr6:82907327-82907346 MsG0680034186.01.T01:CDS 55.0%
!! CTCATTGGTTTGCCCTCGTG+AGG + Chr6:82905570-82905589 None:intergenic 55.0%
ACGTGTGCAAGCTGCGGTAC+CGG - Chr6:82906508-82906527 MsG0680034186.01.T01:CDS 60.0%
CGCATTGCGACCCACCACAA+CGG - Chr6:82905793-82905812 MsG0680034186.01.T01:intron 60.0%
CTCCACCATGGTGGCCAACT+GGG - Chr6:82905841-82905860 MsG0680034186.01.T01:intron 60.0%
GTACCGCAGCTTGCACACGT+TGG + Chr6:82906508-82906527 None:intergenic 60.0%
TTCCCAGTTGGCCACCATGG+TGG + Chr6:82905846-82905865 None:intergenic 60.0%
!! CGTTGTGGTGGGTCGCAATG+CGG + Chr6:82905795-82905814 None:intergenic 60.0%
CCAGTTGGCCACCATGGTGG+AGG + Chr6:82905843-82905862 None:intergenic 65.0%
CCTCCACCATGGTGGCCAAC+TGG - Chr6:82905840-82905859 MsG0680034186.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 82904943 82907928 82904943 ID=MsG0680034186.01;Name=MsG0680034186.01
Chr6 mRNA 82904943 82907928 82904943 ID=MsG0680034186.01.T01;Parent=MsG0680034186.01;Name=MsG0680034186.01.T01;_AED=0.10;_eAED=0.11;_QI=0|0|0|1|1|1|3|0|619
Chr6 exon 82907624 82907928 82907624 ID=MsG0680034186.01.T01:exon:11481;Parent=MsG0680034186.01.T01
Chr6 exon 82906314 82907362 82906314 ID=MsG0680034186.01.T01:exon:11482;Parent=MsG0680034186.01.T01
Chr6 exon 82904943 82905448 82904943 ID=MsG0680034186.01.T01:exon:11483;Parent=MsG0680034186.01.T01
Chr6 CDS 82907624 82907928 82907624 ID=MsG0680034186.01.T01:cds;Parent=MsG0680034186.01.T01
Chr6 CDS 82906314 82907362 82906314 ID=MsG0680034186.01.T01:cds;Parent=MsG0680034186.01.T01
Chr6 CDS 82904943 82905448 82904943 ID=MsG0680034186.01.T01:cds;Parent=MsG0680034186.01.T01
Gene Sequence

>MsG0680034186.01.T01

CTTTTTTATTTTTGTAGATTATTTCATATAAAAGAAGAAATGCATTCCAATGTTTATAATGGTGCTATCGCTAACCCTTCAAGGGGAGAAGCTTCAAACAATGCAAAACAAGAAAAAGGAAAGGAAAAGGTAGAAGATGAAATTGAGAAAAAAGAGCTAACTATTGAGGAACTAGAGGCAAAGATATCTAAAGATAAAATGCTGCTAAAAAAGATGAAGGAAGAAAGAAGTAAAAGAGACAACACTACATCATTGGAACAAAGGAAAAGAAAGACAATGGCTCGTGCACAAGAGCGTGTATTAAGGCACATGTTAAAGATGATGGAAGTTTGTGATGCTCGTGGCTTCATCTATGGAGTAATACCTCACGAGGGCAAACCAATGAGTGGTTCATCAGACAATTTACGAGGCTGGTGGAAAGACATAGTTAAATTCGACAAAAACGGTCCAGCGGCAATTGCTAAATATGAAGCAGAAAATGGAATTACAACAACAAATTATGAAAAGTTGAATGGTGAACCAATTACATTCGAATTGCTGAATGAACTACCCGATACCATATTAAGTTCCCTTCTATCATCATTAGTGCCGCATTGCGACCCACCACAACGGAGATTTCCATTGGAAAAAGGCATTCCTCCACCATGGTGGCCAACTGGGAAAGAATCATGGTGGAATGAGATGAGATTTAGTGAAGATCTTGGCATACCCCCTTATAGAAAGCCTCATGATCTGAAGAAGGTTTGGAAGGTTTATGTTTTGGCAGCTGTAATAAAACACATGTCTCCTAACATTCAGAAGATTAGGAACATTGTCAAACAGTCAAGGAATTTACAAGATAAACTCACCATTAAGGAAACAACCATTTGGTTTGCTATTATTAATCATGAAGAAACAATTGCAAGAAAACTACATCCTGAATTTTTCTCAAGTTTTGATTCTTGTGTTGAAGGAAGTAATTATGTGCTTGTTGAGGAAAATGATTTTGATGTTGTGGAAGGCGGTGAGCACAATCTAGCAAAACGAAAACTATCATCATCATCTTCACCATCATCATCATCGTCATCGTCATATGAGGGTACTAACAAGAGAAAGCGTGTACTTGGTAAGAGAATTAGTACTGAACATGCTACACCTCTTGATCAACATGAATTCCAGCAAGAGAGAAATGTGAGAAACAATCATCACTTTACTAGTACACAACTAGGAAGCAGCACCAACATCAACAACAACGACAACAACCAATTTCAAATGGCTGGATTTGAAGTGTCAACAGTTCATCAAAATGTTGCACCTCTTGACCAACGTGTGCAAGCTGCGGTACCGGTTGCAAATCAGATCATTCATCATACAGGCATTCAGCCGAATAAAAACACCGTCATGAGTACGATGATTCCAACTCCCGGTGTTAATCATAACATGCACCACCAAATCTACCATGCAAGTGTTCAACAGGAGAAGAACAACATGAGTACTATGATTCCAAATCACGGTGTCAATCAAAGCATGCATCGTCAAATCTACACCGGAAGTGTTCAACAGAACAAGAACACCATCATGAGTACTATGGTTCCAACTCCTAGTGTTAATCAAAACTTGCATCCTCAAGTCTACACTTCAAGTGTTCATGAACAACAGAGGAGCAACACCATGATGAATAGTTCAATGATGAGTACTTCAATGCCAGTTATGAACATGGTTTCAACTTCCGGATTTAACCAAAACATGCAGCCTCAAATGGACCAAAATTTCTATGGTCAACAAGGGGGTGCAAATAACTACTATCACTACAAAGTGCCTAATGTTCCAATGCAAGCAATACCTCAACAACAACCTTTGATTCATCTTTTGATCATTTGA
Protein sequence

>MsG0680034186.01.T01

LFYFCRLFHIKEEMHSNVYNGAIANPSRGEASNNAKQEKGKEKVEDEIEKKELTIEELEAKISKDKMLLKKMKEERSKRDNTTSLEQRKRKTMARAQERVLRHMLKMMEVCDARGFIYGVIPHEGKPMSGSSDNLRGWWKDIVKFDKNGPAAIAKYEAENGITTTNYEKLNGEPITFELLNELPDTILSSLLSSLVPHCDPPQRRFPLEKGIPPPWWPTGKESWWNEMRFSEDLGIPPYRKPHDLKKVWKVYVLAAVIKHMSPNIQKIRNIVKQSRNLQDKLTIKETTIWFAIINHEETIARKLHPEFFSSFDSCVEGSNYVLVEENDFDVVEGGEHNLAKRKLSSSSSPSSSSSSSYEGTNKRKRVLGKRISTEHATPLDQHEFQQERNVRNNHHFTSTQLGSSTNINNNDNNQFQMAGFEVSTVHQNVAPLDQRVQAAVPVANQIIHHTGIQPNKNTVMSTMIPTPGVNHNMHHQIYHASVQQEKNNMSTMIPNHGVNQSMHRQIYTGSVQQNKNTIMSTMVPTPSVNQNLHPQVYTSSVHEQQRSNTMMNSSMMSTSMPVMNMVSTSGFNQNMQPQMDQNFYGQQGGANNYYHYKVPNVPMQAIPQQQPLIHLLII*