AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034609.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034609.01.T01 MTR_6g069870 57.333 150 59 3 41 188 62 208 3.34e-48 162
MsG0680034609.01.T01 MTR_6g069870 57.333 150 59 3 41 188 62 208 5.20e-48 161
MsG0680034609.01.T01 MTR_6g069870 57.333 150 59 3 41 188 62 208 1.16e-47 162
MsG0680034609.01.T01 MTR_6g069870 98.077 52 1 0 192 243 344 395 1.06e-27 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034609.01.T01 AT3G17860 34.545 220 86 10 1 171 1 211 7.84e-19 84.7
MsG0680034609.01.T01 AT3G17860 66.667 60 17 2 112 171 122 178 3.31e-16 77.0
MsG0680034609.01.T01 AT3G17860 66.667 60 17 2 112 171 122 178 3.31e-16 77.0
MsG0680034609.01.T01 AT3G17860 66.667 60 17 2 112 171 142 198 4.05e-16 76.6
MsG0680034609.01.T01 AT1G48500 31.148 183 99 6 1 165 1 174 9.28e-13 66.6
MsG0680034609.01.T01 AT1G48500 31.148 183 99 6 1 165 1 174 1.29e-12 66.6

Find 43 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATACATGTTCTTCTTAA+AGG 0.090775 6:+91223533 None:intergenic
TGTTCTTCTTAAAGGCAAAT+TGG 0.268291 6:+91223541 None:intergenic
CAATCTAATCATGTTATTAC+TGG 0.306462 6:-91225346 MsG0680034609.01.T01:CDS
GTTTCAAACTCACAAACTTT+TGG 0.315622 6:-91225304 MsG0680034609.01.T01:CDS
GTTGGAAGCATCTTCTTTCA+TGG 0.359919 6:+91229216 None:intergenic
AGTTTCTCCATTGATTTCTC+TGG 0.361158 6:-91223584 MsG0680034609.01.T01:CDS
TACTGTACCACCATAAAATA+TGG 0.366528 6:+91224938 None:intergenic
AGGTGTAGTACCATTGGATT+TGG 0.407015 6:+91224971 None:intergenic
TCTGATCCAGTGCTGCATTC+AGG 0.408286 6:+91223614 None:intergenic
CCATCCAAAGGTTCCATAGT+TGG 0.409577 6:-91225249 MsG0680034609.01.T01:CDS
AAGTGTTTGGTTGTGGTGAA+TGG 0.423093 6:+91229385 None:intergenic
AGAGCCAACTATGGAACCTT+TGG 0.428876 6:+91225245 None:intergenic
TAGTTGGCTCTACTGACTTA+AGG 0.429024 6:-91225233 MsG0680034609.01.T01:intron
CAGTAATAACATGATTAGAT+TGG 0.431253 6:+91225347 None:intergenic
GCCTTTAAGAAGAACATGTA+TGG 0.452229 6:-91223534 MsG0680034609.01.T01:CDS
CGCGAAAAGCATCGCTGACT+CGG 0.452418 6:-91224015 MsG0680034609.01.T01:CDS
TAAAATATGGTCAACTGAGC+AGG 0.468648 6:+91224951 None:intergenic
ACAGAGAAAAGTGAAGTGTT+TGG 0.471703 6:+91229372 None:intergenic
TAAGTCAGTAGAGCCAACTA+TGG 0.481454 6:+91225236 None:intergenic
AGGAATTCTCTTTCCATATG+TGG 0.481576 6:+91229271 None:intergenic
CTGAGCAGGTGTAGTACCAT+TGG 0.495191 6:+91224965 None:intergenic
CTTCTTAAAGGCAAATTGGT+GGG 0.529876 6:+91223545 None:intergenic
TCTTCTTTCATGGTAGTCCA+TGG 0.530904 6:+91229226 None:intergenic
AAAGCAAGAGAGTAGAAGAA+AGG 0.533416 6:+91229417 None:intergenic
AAATCACCTGAATGCAGCAC+TGG 0.539481 6:-91223620 MsG0680034609.01.T01:CDS
ACTTGAACCAGAGAAATCAA+TGG 0.546674 6:+91223577 None:intergenic
AAAAGTGAAGTGTTTGGTTG+TGG 0.556120 6:+91229378 None:intergenic
TCTTCTTAAAGGCAAATTGG+TGG 0.560082 6:+91223544 None:intergenic
ACATTGACACGTACACCCAC+TGG 0.564628 6:+91227742 None:intergenic
TTTATCTGTTCTCCATCCAA+AGG 0.569230 6:-91225261 MsG0680034609.01.T01:CDS
TTTGCATCAGAACTTTGCAT+AGG 0.576624 6:+91225411 None:intergenic
GAACAGATAAAGTGTGGCAG+AGG 0.580127 6:+91225273 None:intergenic
CATATGGAAAGAGAATTCCT+TGG 0.590006 6:-91229268 MsG0680034609.01.T01:CDS
CTTAAAGGCAAATTGGTGGG+TGG 0.595542 6:+91223548 None:intergenic
CCAACTATGGAACCTTTGGA+TGG 0.596705 6:+91225249 None:intergenic
TGATGACATCTCTCCTGAGA+AGG 0.609439 6:-91224907 MsG0680034609.01.T01:intron
AGGAATTGTTCCAAATCCAA+TGG 0.614409 6:-91224981 MsG0680034609.01.T01:CDS
TATGTGTTAGTGTTGCCAGT+GGG 0.619706 6:-91227757 MsG0680034609.01.T01:intron
AAGCAAGTAGAAAACAAGCA+TGG 0.620391 6:-91225447 MsG0680034609.01.T01:CDS
CTATGTGTTAGTGTTGCCAG+TGG 0.627968 6:-91227758 MsG0680034609.01.T01:intron
TGTTATTACTGGAATCAACA+TGG 0.635983 6:-91225335 MsG0680034609.01.T01:CDS
GATGGAGAACAGATAAAGTG+TGG 0.669205 6:+91225267 None:intergenic
TCCAACAAACCAAAAGACCA+AGG 0.694197 6:-91229199 MsG0680034609.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATAATATACTAGA+TGG + Chr6:91225736-91225755 None:intergenic 10.0%
!! TATAATATATTATATGATGA+TGG - Chr6:91225748-91225767 MsG0680034609.01.T01:intron 10.0%
!! TATCATTAAATTAACAAAAA+CGG - Chr6:91223878-91223897 MsG0680034609.01.T01:intron 10.0%
!! TATTTCTCTAATAATATATA+AGG - Chr6:91224227-91224246 MsG0680034609.01.T01:intron 10.0%
!! TGGAAAAAAAAAAAAAAAAA+AGG + Chr6:91223799-91223818 None:intergenic 10.0%
!!! AATTATTTTGATATATACAA+TGG + Chr6:91226790-91226809 None:intergenic 10.0%
!!! ATATAATCTTTTAAAAAACA+TGG - Chr6:91226140-91226159 MsG0680034609.01.T01:intron 10.0%
!!! TAAAAATGCTTATATTTTTT+TGG - Chr6:91225262-91225281 MsG0680034609.01.T01:CDS 10.0%
!!! TTATTTTTTAATGTTGATTT+AGG - Chr6:91226487-91226506 MsG0680034609.01.T01:intron 10.0%
!!! TTTTATTATTTATTTTGATG+GGG - Chr6:91226261-91226280 MsG0680034609.01.T01:intron 10.0%
!! ATAAAATATTCATATACGAA+TGG - Chr6:91225658-91225677 MsG0680034609.01.T01:intron 15.0%
!! CATGTTTAATATTAAATCTA+AGG - Chr6:91225545-91225564 MsG0680034609.01.T01:intron 15.0%
!! CTTAGATTTAATATTAAACA+TGG + Chr6:91225547-91225566 None:intergenic 15.0%
!! TATCTATATCTTATAATTTG+TGG - Chr6:91227384-91227403 MsG0680034609.01.T01:intron 15.0%
!! TATGTTTATAAGAAAATTTC+TGG + Chr6:91224122-91224141 None:intergenic 15.0%
!!! AAAATTGTTATTATTTCTCA+AGG + Chr6:91225602-91225621 None:intergenic 15.0%
!!! AATTTTTTCTATGATAATCA+CGG + Chr6:91225008-91225027 None:intergenic 15.0%
!!! AGAATTTTTTTGTTTTCTAT+AGG - Chr6:91227933-91227952 MsG0680034609.01.T01:intron 15.0%
!!! ATTTTTTTTGTACTTACTTA+GGG - Chr6:91229265-91229284 MsG0680034609.01.T01:CDS 15.0%
!!! GTTTTTAAATATAAATATCG+TGG - Chr6:91225439-91225458 MsG0680034609.01.T01:CDS 15.0%
!!! TAACTTGTAGATAATAATAA+AGG - Chr6:91224051-91224070 MsG0680034609.01.T01:intron 15.0%
!!! TATAATGAAATTATCCTTTT+TGG + Chr6:91228277-91228296 None:intergenic 15.0%
!!! TATATATTGAGAAACAATTT+TGG - Chr6:91226912-91226931 MsG0680034609.01.T01:intron 15.0%
!!! TATTAGTTTTATTGTTATCT+AGG + Chr6:91226077-91226096 None:intergenic 15.0%
!! AAAAGATAAATATACCAGAT+AGG + Chr6:91228656-91228675 None:intergenic 20.0%
!! AAACTAATAACAAAGTAACA+AGG - Chr6:91226088-91226107 MsG0680034609.01.T01:intron 20.0%
!! AAATAATACTATGCTTCATA+AGG - Chr6:91225979-91225998 MsG0680034609.01.T01:intron 20.0%
!! AAATTTGTGATATGATATTG+TGG - Chr6:91227888-91227907 MsG0680034609.01.T01:intron 20.0%
!! TCAAAGTAAAATCTAGTATA+TGG + Chr6:91227223-91227242 None:intergenic 20.0%
!! TGAAGCATAGTATTATTTAA+TGG + Chr6:91225977-91225996 None:intergenic 20.0%
!! TTAATTCAATTATGTAGCAT+AGG + Chr6:91224410-91224429 None:intergenic 20.0%
!!! AAAATTGATTTTGACCTATT+TGG + Chr6:91227157-91227176 None:intergenic 20.0%
!!! AAAATTTTATATTAGCACAC+TGG - Chr6:91224458-91224477 MsG0680034609.01.T01:intron 20.0%
!!! ATAGATATAAGCTTTTATGT+GGG + Chr6:91227371-91227390 None:intergenic 20.0%
!!! CATTTTTTTTGTACTTACTT+AGG - Chr6:91229264-91229283 MsG0680034609.01.T01:CDS 20.0%
!!! CTTATATTTTTTTGGTTAGA+AGG - Chr6:91225270-91225289 MsG0680034609.01.T01:CDS 20.0%
!!! TAAATGAAATGGTTTTCTTT+AGG + Chr6:91225127-91225146 None:intergenic 20.0%
!!! TACTTCTTTTGATATTTTGT+AGG - Chr6:91227456-91227475 MsG0680034609.01.T01:intron 20.0%
!!! TATAGATATAAGCTTTTATG+TGG + Chr6:91227372-91227391 None:intergenic 20.0%
!!! TATAGTTTTATATCATGCAT+GGG - Chr6:91223959-91223978 MsG0680034609.01.T01:intron 20.0%
!!! TATATCTTATAATTTGTGGA+AGG - Chr6:91227388-91227407 MsG0680034609.01.T01:intron 20.0%
!!! TGATATTTTGTAGGAAAATT+TGG - Chr6:91227465-91227484 MsG0680034609.01.T01:intron 20.0%
!!! TTATAGTTTTATATCATGCA+TGG - Chr6:91223958-91223977 MsG0680034609.01.T01:intron 20.0%
!!! TTATATTTTATTGCATAACG+TGG - Chr6:91225354-91225373 MsG0680034609.01.T01:CDS 20.0%
!!! TTATTTCCTTTTTATCGATT+AGG - Chr6:91224856-91224875 MsG0680034609.01.T01:intron 20.0%
!!! TTCAGCATTTGTTATATTTA+TGG - Chr6:91228713-91228732 MsG0680034609.01.T01:intron 20.0%
!!! TTTTGAACTTATCCATTAAA+GGG + Chr6:91224308-91224327 None:intergenic 20.0%
!!! TTTTTGAACTTATCCATTAA+AGG + Chr6:91224309-91224328 None:intergenic 20.0%
!!! TTTTTTCTTTTTGATGCAAT+GGG + Chr6:91224666-91224685 None:intergenic 20.0%
! AAAAAAAAGGAAAGCAGAAA+AGG + Chr6:91223786-91223805 None:intergenic 25.0%
! AATTCAAACTTATATCCACA+TGG + Chr6:91224634-91224653 None:intergenic 25.0%
! ACGCTATTAAGATAAGTTTA+CGG + Chr6:91228071-91228090 None:intergenic 25.0%
! AGAATAATACTCATGAAGAT+AGG - Chr6:91226613-91226632 MsG0680034609.01.T01:intron 25.0%
! AGTAAAATCTAGTATATGGT+TGG + Chr6:91227219-91227238 None:intergenic 25.0%
! AGTCTAAAAATCAATTGTAG+AGG - Chr6:91227079-91227098 MsG0680034609.01.T01:intron 25.0%
! ATTAAACTCAATGACCAAAT+TGG - Chr6:91229176-91229195 MsG0680034609.01.T01:intron 25.0%
! ATTGTTATCTAGGTAATAAC+TGG + Chr6:91226067-91226086 None:intergenic 25.0%
! CAATCTAATCATGTTATTAC+TGG - Chr6:91227594-91227613 MsG0680034609.01.T01:intron 25.0%
! CAGTAATAACATGATTAGAT+TGG + Chr6:91227596-91227615 None:intergenic 25.0%
! CATAAACCTAATCGATAAAA+AGG + Chr6:91224865-91224884 None:intergenic 25.0%
! CATCAAAATCAAGAAAATGA+AGG + Chr6:91225381-91225400 None:intergenic 25.0%
! GAAAAAAGCAAAAGAACATA+AGG + Chr6:91224285-91224304 None:intergenic 25.0%
! GAAAATAGAAAAAGATACCT+TGG + Chr6:91223761-91223780 None:intergenic 25.0%
! GACCAAACATCATTAAAATT+TGG + Chr6:91226890-91226909 None:intergenic 25.0%
! GGATAAGTTCAAAAATTCTA+AGG - Chr6:91224314-91224333 MsG0680034609.01.T01:intron 25.0%
! GTCACAATAATAAGATCTTT+AGG - Chr6:91228532-91228551 MsG0680034609.01.T01:intron 25.0%
! TAATATATAAGGAAGAACCA+TGG - Chr6:91224238-91224257 MsG0680034609.01.T01:intron 25.0%
! TCTAATCAGAAATCATTCTT+GGG - Chr6:91226705-91226724 MsG0680034609.01.T01:intron 25.0%
! TGGTTTCAGATTCAATTATT+AGG - Chr6:91226932-91226951 MsG0680034609.01.T01:intron 25.0%
! TTATATAAGTTCATTTGCGT+TGG + Chr6:91229124-91229143 None:intergenic 25.0%
! TTCTTAAATTTGATGCAGTT+AGG - Chr6:91226527-91226546 MsG0680034609.01.T01:intron 25.0%
! TTTGAACTTATCCATTAAAG+GGG + Chr6:91224307-91224326 None:intergenic 25.0%
!! AAAAAAGTGTGTTGTGATAT+AGG - Chr6:91224680-91224699 MsG0680034609.01.T01:intron 25.0%
!! AAAAAGTGTGTTGTGATATA+GGG - Chr6:91224681-91224700 MsG0680034609.01.T01:intron 25.0%
!! ATGAAATTATCCTTTTTGGA+AGG + Chr6:91228273-91228292 None:intergenic 25.0%
!! ATTAAATCTAAGGTCTAACA+TGG - Chr6:91225555-91225574 MsG0680034609.01.T01:intron 25.0%
!! TAAAGTATCTATCTATCACA+TGG - Chr6:91224435-91224454 MsG0680034609.01.T01:intron 25.0%
!! TTAAATCTAAGGTCTAACAT+GGG - Chr6:91225556-91225575 MsG0680034609.01.T01:intron 25.0%
!! TTTTAACAAGTCACATCTTA+AGG + Chr6:91225922-91225941 None:intergenic 25.0%
!! TTTTCTATACCTAATATCCA+AGG + Chr6:91229018-91229037 None:intergenic 25.0%
!! TTTTTATGTTAATGACAAGC+TGG - Chr6:91225619-91225638 MsG0680034609.01.T01:intron 25.0%
!!! AGTTTTGTTGTGTTTATAGT+TGG - Chr6:91228891-91228910 MsG0680034609.01.T01:intron 25.0%
!!! ATAGTTTTATATCATGCATG+GGG - Chr6:91223960-91223979 MsG0680034609.01.T01:intron 25.0%
!!! ATGTGTTTTATTAGAAATGC+GGG + Chr6:91227808-91227827 None:intergenic 25.0%
!!! CAAACTTGTTATTTCAAGAT+GGG - Chr6:91226461-91226480 MsG0680034609.01.T01:intron 25.0%
!!! CATGTGTTTTATTAGAAATG+CGG + Chr6:91227809-91227828 None:intergenic 25.0%
!!! CTTTTTTCTTTTTGATGCAA+TGG + Chr6:91224667-91224686 None:intergenic 25.0%
!!! GACCAAATTTTAATGATGTT+TGG - Chr6:91226885-91226904 MsG0680034609.01.T01:intron 25.0%
!!! GATGGACTATGATTAAATAA+GGG - Chr6:91225766-91225785 MsG0680034609.01.T01:intron 25.0%
!!! GATTTTTTGCTCATATAGTA+TGG + Chr6:91229305-91229324 None:intergenic 25.0%
!!! GCATCTTCTAAATAGTTTTA+TGG - Chr6:91226196-91226215 MsG0680034609.01.T01:intron 25.0%
!!! TATTTTTTTGGTTAGAAGGT+TGG - Chr6:91225274-91225293 MsG0680034609.01.T01:CDS 25.0%
!!! TGATGGACTATGATTAAATA+AGG - Chr6:91225765-91225784 MsG0680034609.01.T01:intron 25.0%
!!! TGATTTTATTTTCCATGACT+AGG - Chr6:91228188-91228207 MsG0680034609.01.T01:intron 25.0%
!!! TTTTTGTTTTCTATAGGAGT+AGG - Chr6:91227939-91227958 MsG0680034609.01.T01:intron 25.0%
AAATTCATTCTTCTCTTCCA+TGG + Chr6:91224258-91224277 None:intergenic 30.0%
AACTTATCTTAATAGCGTAG+TGG - Chr6:91228073-91228092 MsG0680034609.01.T01:intron 30.0%
AATCTCTATTCCTTCCAAAA+AGG - Chr6:91228260-91228279 MsG0680034609.01.T01:intron 30.0%
ACACCTTCATAAAAGTAAGT+TGG + Chr6:91225862-91225881 None:intergenic 30.0%
AGAATCAATTGTTATAACCG+TGG + Chr6:91226987-91227006 None:intergenic 30.0%
AGGGTCAAAATAAATAGATG+TGG - Chr6:91224700-91224719 MsG0680034609.01.T01:intron 30.0%
ATAGGCATACTATATATACC+TGG + Chr6:91228638-91228657 None:intergenic 30.0%
ATTCAATTATGTAGCATAGG+AGG + Chr6:91224407-91224426 None:intergenic 30.0%
CATTAAAATTTGGTCAAACG+TGG + Chr6:91226880-91226899 None:intergenic 30.0%
CCATCTTGAAATAACAAGTT+TGG + Chr6:91226463-91226482 None:intergenic 30.0%
CGATAGATTCATGTAAAAGT+GGG - Chr6:91227042-91227061 MsG0680034609.01.T01:intron 30.0%
GAAATACTAATACGTGTCTT+TGG + Chr6:91224213-91224232 None:intergenic 30.0%
GCTTTACATAAACTAGAAGA+AGG + Chr6:91228854-91228873 None:intergenic 30.0%
GGGTCAAAATAAATAGATGT+GGG - Chr6:91224701-91224720 MsG0680034609.01.T01:intron 30.0%
GTATATATAGTATGCCTATC+TGG - Chr6:91228639-91228658 MsG0680034609.01.T01:intron 30.0%
GTCACAATCATAAGAACTTT+AGG - Chr6:91228389-91228408 MsG0680034609.01.T01:intron 30.0%
GTCTAATCAGAAATCATTCT+TGG - Chr6:91226704-91226723 MsG0680034609.01.T01:intron 30.0%
TACTGTACCACCATAAAATA+TGG + Chr6:91228005-91228024 None:intergenic 30.0%
TATCTTCACTGCTGAAAAAA+AGG - Chr6:91226421-91226440 MsG0680034609.01.T01:intron 30.0%
TCCATACATGTTCTTCTTAA+AGG + Chr6:91229410-91229429 None:intergenic 30.0%
TCGATAGATTCATGTAAAAG+TGG - Chr6:91227041-91227060 MsG0680034609.01.T01:intron 30.0%
TGCTATTATGTTAGCCAATT+TGG + Chr6:91229193-91229212 None:intergenic 30.0%
TGTTAAAAAACACCACCAAA+GGG - Chr6:91225934-91225953 MsG0680034609.01.T01:intron 30.0%
TGTTATTACTGGAATCAACA+TGG - Chr6:91227605-91227624 MsG0680034609.01.T01:intron 30.0%
TGTTCTTCTTAAAGGCAAAT+TGG + Chr6:91229402-91229421 None:intergenic 30.0%
TGTTGGTGCAAAATATTTCA+TGG + Chr6:91223819-91223838 None:intergenic 30.0%
TGTTTGATGTGTGGTATTTA+TGG - Chr6:91224515-91224534 MsG0680034609.01.T01:intron 30.0%
TTAAATTTATATGCCGTACC+TGG - Chr6:91226041-91226060 MsG0680034609.01.T01:intron 30.0%
TTCTTGAATGACATGAATTG+AGG + Chr6:91226597-91226616 None:intergenic 30.0%
TTGTTAAAAAACACCACCAA+AGG - Chr6:91225933-91225952 MsG0680034609.01.T01:intron 30.0%
TTTGAACCATAAGTATGACA+TGG + Chr6:91224490-91224509 None:intergenic 30.0%
! GTTTCAAACTCACAAACTTT+TGG - Chr6:91227636-91227655 MsG0680034609.01.T01:intron 30.0%
! TAGTTGATATATAGTCCATG+TGG - Chr6:91224616-91224635 MsG0680034609.01.T01:intron 30.0%
! TATAAGCTTTTATGTGGGTT+AGG + Chr6:91227366-91227385 None:intergenic 30.0%
! TTTTGTGATGTGATTTTCTG+AGG - Chr6:91229235-91229254 MsG0680034609.01.T01:CDS 30.0%
!! AAAAAGATACCTTGGTCTTT+TGG + Chr6:91223753-91223772 None:intergenic 30.0%
!! ACACCAACTTACTTTTATGA+AGG - Chr6:91225856-91225875 MsG0680034609.01.T01:intron 30.0%
!! CAAAAATTCTAAGGTTTCGT+AGG - Chr6:91224323-91224342 MsG0680034609.01.T01:intron 30.0%
!! CCAAACTTGTTATTTCAAGA+TGG - Chr6:91226460-91226479 MsG0680034609.01.T01:intron 30.0%
!! CTTAATATGTTTTTGAGCCT+TGG - Chr6:91228998-91229017 MsG0680034609.01.T01:intron 30.0%
!! CTTGTTTTCTACTTGCTTTA+TGG + Chr6:91227491-91227510 None:intergenic 30.0%
!! CTTTTAAAAAACATGGACTC+TGG - Chr6:91226147-91226166 MsG0680034609.01.T01:intron 30.0%
!! TGTGTTTTATTAGAAATGCG+GGG + Chr6:91227807-91227826 None:intergenic 30.0%
!!! TCTGATTTTTTCACCACATA+TGG - Chr6:91223656-91223675 MsG0680034609.01.T01:CDS 30.0%
!!! TTTGCTTTTTTCCCCTTTAA+TGG - Chr6:91224293-91224312 MsG0680034609.01.T01:intron 30.0%
AAAGCAAGAGAGTAGAAGAA+AGG + Chr6:91223526-91223545 None:intergenic 35.0%
AACTTGCATGAGAAGTCATT+GGG + Chr6:91228478-91228497 None:intergenic 35.0%
AAGAACATTGAGTGCTTGTA+AGG - Chr6:91226820-91226839 MsG0680034609.01.T01:intron 35.0%
AAGCAAGTAGAAAACAAGCA+TGG - Chr6:91227493-91227512 MsG0680034609.01.T01:intron 35.0%
ACTTGAACCAGAGAAATCAA+TGG + Chr6:91229366-91229385 None:intergenic 35.0%
AGGAATTCTCTTTCCATATG+TGG + Chr6:91223672-91223691 None:intergenic 35.0%
AGGAATTGTTCCAAATCCAA+TGG - Chr6:91227959-91227978 MsG0680034609.01.T01:intron 35.0%
AGTTACTCTATGAGCATTTG+CGG - Chr6:91225829-91225848 MsG0680034609.01.T01:intron 35.0%
ATCAACTAGCTCAAGAATTG+TGG + Chr6:91224604-91224623 None:intergenic 35.0%
ATCATGTTACTAGCTGGAAA+TGG - Chr6:91228219-91228238 MsG0680034609.01.T01:intron 35.0%
CAATAGGAGATTCAAATGGT+TGG + Chr6:91228575-91228594 None:intergenic 35.0%
CATATGGAAAGAGAATTCCT+TGG - Chr6:91223672-91223691 MsG0680034609.01.T01:CDS 35.0%
CTACTTGAGAACATCCAAAT+AGG - Chr6:91227140-91227159 MsG0680034609.01.T01:intron 35.0%
CTCGACCTCTATTAATTAAC+CGG + Chr6:91228751-91228770 None:intergenic 35.0%
CTTCTTAAAGGCAAATTGGT+GGG + Chr6:91229398-91229417 None:intergenic 35.0%
GCAAAAAAAGTTACCTTCTC+AGG + Chr6:91228049-91228068 None:intergenic 35.0%
GCAACAATAGGAGATTCAAA+TGG + Chr6:91228579-91228598 None:intergenic 35.0%
TAAAATATGGTCAACTGAGC+AGG + Chr6:91227992-91228011 None:intergenic 35.0%
TAGGTCAAGAAACAGTGTTA+TGG - Chr6:91226632-91226651 MsG0680034609.01.T01:intron 35.0%
TATGATATTGTGGAGCAATG+TGG - Chr6:91227898-91227917 MsG0680034609.01.T01:intron 35.0%
TATGTTAGAAAACGTGCTCT+TGG - Chr6:91225307-91225326 MsG0680034609.01.T01:CDS 35.0%
TCAGTTCCAAAAATAGTCCA+TGG - Chr6:91223697-91223716 MsG0680034609.01.T01:intron 35.0%
TCATATATCCAGAAAGCTAC+TGG + Chr6:91226660-91226679 None:intergenic 35.0%
TCATGCAAGTTCTTATCCAA+GGG - Chr6:91228487-91228506 MsG0680034609.01.T01:intron 35.0%
TCCTACAAAGTAGCAACAAT+AGG + Chr6:91228591-91228610 None:intergenic 35.0%
TCTTCTTAAAGGCAAATTGG+TGG + Chr6:91229399-91229418 None:intergenic 35.0%
TGAATGACATGAATTGAGGA+AGG + Chr6:91226593-91226612 None:intergenic 35.0%
TTAATGTGTGTTTGCTTCCA+CGG - Chr6:91226967-91226986 MsG0680034609.01.T01:intron 35.0%
TTTATCTGTTCTCCATCCAA+AGG - Chr6:91227679-91227698 MsG0680034609.01.T01:intron 35.0%
TTTCACATCCCCATAACAAT+AGG + Chr6:91223842-91223861 None:intergenic 35.0%
TTTGCATCAGAACTTTGCAT+AGG + Chr6:91227532-91227551 None:intergenic 35.0%
! AAAAGTGAAGTGTTTGGTTG+TGG + Chr6:91223565-91223584 None:intergenic 35.0%
! ACAGAGAAAAGTGAAGTGTT+TGG + Chr6:91223571-91223590 None:intergenic 35.0%
! ATCAAGTGTCTTAAGAGCAT+TGG - Chr6:91224081-91224100 MsG0680034609.01.T01:intron 35.0%
! CAGTTGACCATATTTTATGG+TGG - Chr6:91227995-91228014 MsG0680034609.01.T01:intron 35.0%
! GCCTTTAAGAAGAACATGTA+TGG - Chr6:91229406-91229425 MsG0680034609.01.T01:five_prime_UTR 35.0%
! GCTCAGTTGACCATATTTTA+TGG - Chr6:91227992-91228011 MsG0680034609.01.T01:intron 35.0%
! TATTTTCCATGACTAGGCTA+AGG - Chr6:91228194-91228213 MsG0680034609.01.T01:intron 35.0%
! TCGTAGGAAGAACTTGTTTA+AGG - Chr6:91224339-91224358 MsG0680034609.01.T01:intron 35.0%
! TGAGTGCTTGTAAGGTTTTA+AGG - Chr6:91226828-91226847 MsG0680034609.01.T01:intron 35.0%
! TTATATTAGCACACTGGCTA+GGG - Chr6:91224464-91224483 MsG0680034609.01.T01:intron 35.0%
! TTATTTTCTGCAATCTGCGA+TGG - Chr6:91228111-91228130 MsG0680034609.01.T01:intron 35.0%
! TTTATATTAGCACACTGGCT+AGG - Chr6:91224463-91224482 MsG0680034609.01.T01:intron 35.0%
! TTTTGTTACAAGTCACCCTT+TGG + Chr6:91225952-91225971 None:intergenic 35.0%
!! AGTTTCTCCATTGATTTCTC+TGG - Chr6:91229356-91229375 MsG0680034609.01.T01:five_prime_UTR 35.0%
!! CAAAGTTGATGTTTGATGTG+TGG - Chr6:91224506-91224525 MsG0680034609.01.T01:intron 35.0%
!! GTTTTTGAGCCTTGGATATT+AGG - Chr6:91229006-91229025 MsG0680034609.01.T01:intron 35.0%
!! TCAAAGTTGATGTGTGAATG+TGG - Chr6:91224539-91224558 MsG0680034609.01.T01:intron 35.0%
!! TCCTATTGTTGCTACTTTGT+AGG - Chr6:91228587-91228606 MsG0680034609.01.T01:intron 35.0%
!!! TATTTTTGGAACTGAAGCCA+AGG + Chr6:91223692-91223711 None:intergenic 35.0%
AAGGCTATCATGTTACTAGC+TGG - Chr6:91228213-91228232 MsG0680034609.01.T01:intron 40.0%
AAGTGTTTGGTTGTGGTGAA+TGG + Chr6:91223558-91223577 None:intergenic 40.0%
AGCACTCAATGTTCTTCAAC+AGG + Chr6:91226816-91226835 None:intergenic 40.0%
AGGAGATTCAAATGGTTGGT+AGG + Chr6:91228571-91228590 None:intergenic 40.0%
AGGTGTAGTACCATTGGATT+TGG + Chr6:91227972-91227991 None:intergenic 40.0%
AGTTTGATTCCTCCTTGAGT+GGG - Chr6:91227192-91227211 MsG0680034609.01.T01:intron 40.0%
ATCCCCATAACAATAGGTGT+TGG + Chr6:91223836-91223855 None:intergenic 40.0%
CACCAACACCTATTGTTATG+GGG - Chr6:91223831-91223850 MsG0680034609.01.T01:intron 40.0%
CCTACAAATGTGATTCAACC+AGG - Chr6:91228617-91228636 MsG0680034609.01.T01:intron 40.0%
CCTGGTTGAATCACATTTGT+AGG + Chr6:91228620-91228639 None:intergenic 40.0%
CTCATGCAAGTTCTTATCCA+AGG - Chr6:91228486-91228505 MsG0680034609.01.T01:intron 40.0%
CTTGTCAGTGTGTTGTAAGA+TGG - Chr6:91224575-91224594 MsG0680034609.01.T01:intron 40.0%
GAACTTGCATGAGAAGTCAT+TGG + Chr6:91228479-91228498 None:intergenic 40.0%
GATGGAGAACAGATAAAGTG+TGG + Chr6:91227676-91227695 None:intergenic 40.0%
GCACCAACACCTATTGTTAT+GGG - Chr6:91223830-91223849 MsG0680034609.01.T01:intron 40.0%
GTTGATGTGTGAATGTGGTA+GGG - Chr6:91224544-91224563 MsG0680034609.01.T01:intron 40.0%
TAAGTCAGTAGAGCCAACTA+TGG + Chr6:91227707-91227726 None:intergenic 40.0%
TATCTAGGTAATAACTGGCC+AGG + Chr6:91226062-91226081 None:intergenic 40.0%
TATGTGTTAGTGTTGCCAGT+GGG - Chr6:91225183-91225202 MsG0680034609.01.T01:intron 40.0%
TCCAACAAACCAAAAGACCA+AGG - Chr6:91223741-91223760 MsG0680034609.01.T01:intron 40.0%
TCTTCTTTCATGGTAGTCCA+TGG + Chr6:91223717-91223736 None:intergenic 40.0%
TGAGAGGACTTTGCAATTGA+AGG + Chr6:91228416-91228435 None:intergenic 40.0%
TGATGGGGTAGATGAAGTAT+AGG - Chr6:91226276-91226295 MsG0680034609.01.T01:intron 40.0%
TGCACCAACACCTATTGTTA+TGG - Chr6:91223829-91223848 MsG0680034609.01.T01:intron 40.0%
TGCAGTGGTCGTTTCAAATA+AGG - Chr6:91226560-91226579 MsG0680034609.01.T01:intron 40.0%
TTATGGATCCAGTAGCTTTC+TGG - Chr6:91226649-91226668 MsG0680034609.01.T01:intron 40.0%
TTGAATGTGTCACCTAGACA+CGG - Chr6:91229059-91229078 MsG0680034609.01.T01:intron 40.0%
TTTGATGCAGTTAGGAGTTC+AGG - Chr6:91226535-91226554 MsG0680034609.01.T01:intron 40.0%
! AGTTGATGTGTGAATGTGGT+AGG - Chr6:91224543-91224562 MsG0680034609.01.T01:intron 40.0%
! GGAGATTCAAATGGTTGGTA+GGG + Chr6:91228570-91228589 None:intergenic 40.0%
!! GAGATTCAAATGGTTGGTAG+GGG + Chr6:91228569-91228588 None:intergenic 40.0%
!! GGTAGTCCATGGACTATTTT+TGG + Chr6:91223706-91223725 None:intergenic 40.0%
!! GTTGGAAGCATCTTCTTTCA+TGG + Chr6:91223727-91223746 None:intergenic 40.0%
!! GTTTTATTAGAAATGCGGGG+CGG + Chr6:91227804-91227823 None:intergenic 40.0%
!! TAGTTGGCTCTACTGACTTA+AGG - Chr6:91227707-91227726 MsG0680034609.01.T01:intron 40.0%
!! TTTTGGAGAAGCGAAAGGAA+AGG - Chr6:91228949-91228968 MsG0680034609.01.T01:intron 40.0%
!!! ACCTTGGTCTTTTGGTTTGT+TGG + Chr6:91223745-91223764 None:intergenic 40.0%
AAAACGTGCTCTTGGTTGTC+TGG - Chr6:91225315-91225334 MsG0680034609.01.T01:CDS 45.0%
AAATCACCTGAATGCAGCAC+TGG - Chr6:91229320-91229339 MsG0680034609.01.T01:five_prime_UTR 45.0%
AAATGCGGGGCGGAAAAAAT+TGG + Chr6:91227794-91227813 None:intergenic 45.0%
AACTTGGCAAAGGTGAGAGA+TGG + Chr6:91228451-91228470 None:intergenic 45.0%
ACTTGGCAAAGGTGAGAGAT+GGG + Chr6:91228450-91228469 None:intergenic 45.0%
AGAGCCAACTATGGAACCTT+TGG + Chr6:91227698-91227717 None:intergenic 45.0%
AGGTAATAACTGGCCAGGTA+CGG + Chr6:91226057-91226076 None:intergenic 45.0%
ATCATTCTTGGGTGTGACAC+AGG - Chr6:91226716-91226735 MsG0680034609.01.T01:intron 45.0%
ATGACAAGCTGGTTGCAAAG+AGG - Chr6:91225630-91225649 MsG0680034609.01.T01:intron 45.0%
ATGGGATAGGTCATTGTGAG+AGG + Chr6:91228432-91228451 None:intergenic 45.0%
ATTGGGAGAGAACTTGGCAA+AGG + Chr6:91228461-91228480 None:intergenic 45.0%
CATGAGAGGTCATTGGAAGA+GGG + Chr6:91228328-91228347 None:intergenic 45.0%
CCAACTATGGAACCTTTGGA+TGG + Chr6:91227694-91227713 None:intergenic 45.0%
CCATCCAAAGGTTCCATAGT+TGG - Chr6:91227691-91227710 MsG0680034609.01.T01:intron 45.0%
CTAAGGTCTAACATGGGCAT+TGG - Chr6:91225562-91225581 MsG0680034609.01.T01:intron 45.0%
CTAGGGCCATGTCATACTTA+TGG - Chr6:91224481-91224500 MsG0680034609.01.T01:intron 45.0%
CTATGTGTTAGTGTTGCCAG+TGG - Chr6:91225182-91225201 MsG0680034609.01.T01:intron 45.0%
CTTAAAGGCAAATTGGTGGG+TGG + Chr6:91229395-91229414 None:intergenic 45.0%
GAACAGATAAAGTGTGGCAG+AGG + Chr6:91227670-91227689 None:intergenic 45.0%
GAAGTCATTGGGAGAGAACT+TGG + Chr6:91228467-91228486 None:intergenic 45.0%
GAGTTTGATTCCTCCTTGAG+TGG - Chr6:91227191-91227210 MsG0680034609.01.T01:intron 45.0%
GCAAGTTCTTATCCAAGGGA+GGG - Chr6:91228491-91228510 MsG0680034609.01.T01:intron 45.0%
GGTGAGACTTGAGTTTGCAA+TGG - Chr6:91226849-91226868 MsG0680034609.01.T01:intron 45.0%
TATTGTGGAGCAATGTGGAG+TGG - Chr6:91227903-91227922 MsG0680034609.01.T01:intron 45.0%
TCATGCAAGTGCTCAACCAA+GGG - Chr6:91228343-91228362 MsG0680034609.01.T01:intron 45.0%
TGATGACATCTCTCCTGAGA+AGG - Chr6:91228033-91228052 MsG0680034609.01.T01:intron 45.0%
TGCAAGTTCTTATCCAAGGG+AGG - Chr6:91228490-91228509 MsG0680034609.01.T01:intron 45.0%
TGTTACAAGTCACCCTTTGG+TGG + Chr6:91225949-91225968 None:intergenic 45.0%
TTAGGAGTTCAGGAATGCAG+TGG - Chr6:91226545-91226564 MsG0680034609.01.T01:intron 45.0%
TTTATGGTGAAATCGCACGC+CGG - Chr6:91228729-91228748 MsG0680034609.01.T01:intron 45.0%
! GCACGCCGGTTAATTAATAG+AGG - Chr6:91228743-91228762 MsG0680034609.01.T01:intron 45.0%
! TATATGGTTGGTCCCACTCA+AGG + Chr6:91227207-91227226 None:intergenic 45.0%
! TGATAGCCTTAGCCTAGTCA+TGG + Chr6:91228203-91228222 None:intergenic 45.0%
!! TCGGTTTTTGGAGAAGCGAA+AGG - Chr6:91228944-91228963 MsG0680034609.01.T01:intron 45.0%
!! TATATAAATATTAAATGAAA+TGG + Chr6:91225138-91225157 None:intergenic 5.0%
!!! GTTTTTTTATATATATATTT+GGG - Chr6:91223926-91223945 MsG0680034609.01.T01:intron 5.0%
!!! TGTTTTTTTATATATATATT+TGG - Chr6:91223925-91223944 MsG0680034609.01.T01:intron 5.0%
!!! TTTTTATTATTTATTTTGAT+GGG - Chr6:91226260-91226279 MsG0680034609.01.T01:intron 5.0%
!!! TTTTTTATTATTTATTTTGA+TGG - Chr6:91226259-91226278 MsG0680034609.01.T01:intron 5.0%
ACATTGACACGTACACCCAC+TGG + Chr6:91225201-91225220 None:intergenic 50.0%
ATTGACGAGTCTCCGTGTCT+AGG + Chr6:91229074-91229093 None:intergenic 50.0%
CATGCAAGTGCTCAACCAAG+GGG - Chr6:91228344-91228363 MsG0680034609.01.T01:intron 50.0%
CTCATGCAAGTGCTCAACCA+AGG - Chr6:91228342-91228361 MsG0680034609.01.T01:intron 50.0%
CTGAGCAGGTGTAGTACCAT+TGG + Chr6:91227978-91227997 None:intergenic 50.0%
GCAAAGGTGAGAGATGGGAT+AGG + Chr6:91228445-91228464 None:intergenic 50.0%
GCAATGGTGAGAGATAGGGT+TGG + Chr6:91228302-91228321 None:intergenic 50.0%
GCACTTGCATGAGAGGTCAT+TGG + Chr6:91228335-91228354 None:intergenic 50.0%
GCATGAGAGGTCATTGGAAG+AGG + Chr6:91228329-91228348 None:intergenic 50.0%
GCTGGCAATGGTGAGAGATA+GGG + Chr6:91228306-91228325 None:intergenic 50.0%
TCTGATCCAGTGCTGCATTC+AGG + Chr6:91229329-91229348 None:intergenic 50.0%
TGGTTGAGCACTTGCATGAG+AGG + Chr6:91228342-91228361 None:intergenic 50.0%
! ATTGCTACTTGACCCTCCCT+TGG + Chr6:91228506-91228525 None:intergenic 50.0%
! TTGCTACTTGATCCTCCCCT+TGG + Chr6:91228362-91228381 None:intergenic 50.0%
!! TGGTTGGTAGGGGCATTTGA+AGG + Chr6:91228559-91228578 None:intergenic 50.0%
!!! AGCATCGCTGACTCGGTTTT+TGG - Chr6:91228932-91228951 MsG0680034609.01.T01:intron 50.0%
ACGTGCTCTTGGTTGTCTGG+TGG - Chr6:91225318-91225337 MsG0680034609.01.T01:CDS 55.0%
AGAGGTCATTGGAAGAGGGC+TGG + Chr6:91228324-91228343 None:intergenic 55.0%
GGCTGGCAATGGTGAGAGAT+AGG + Chr6:91228307-91228326 None:intergenic 55.0%
! AGCGATGCTTTTCGCGCTTG+AGG + Chr6:91228921-91228940 None:intergenic 55.0%
! ATGGTTGGTCCCACTCAAGG+AGG + Chr6:91227204-91227223 None:intergenic 55.0%
! CATTGGAAGAGGGCTGGCAA+TGG + Chr6:91228318-91228337 None:intergenic 55.0%
!! CGCGAAAAGCATCGCTGACT+CGG - Chr6:91228925-91228944 MsG0680034609.01.T01:intron 55.0%
GCAAGTGCTCAACCAAGGGG+AGG - Chr6:91228347-91228366 MsG0680034609.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 91223520 91229442 91223520 ID=MsG0680034609.01;Name=MsG0680034609.01
Chr6 mRNA 91223520 91229442 91223520 ID=MsG0680034609.01.T01;Parent=MsG0680034609.01;Name=MsG0680034609.01.T01;_AED=0.50;_eAED=0.53;_QI=155|0.33|0.57|1|0.5|0.42|7|0|243
Chr6 exon 91223520 91223705 91223520 ID=MsG0680034609.01.T01:exon:5033;Parent=MsG0680034609.01.T01
Chr6 exon 91223992 91224052 91223992 ID=MsG0680034609.01.T01:exon:5032;Parent=MsG0680034609.01.T01
Chr6 exon 91224739 91224752 91224739 ID=MsG0680034609.01.T01:exon:5031;Parent=MsG0680034609.01.T01
Chr6 exon 91224908 91225007 91224908 ID=MsG0680034609.01.T01:exon:5030;Parent=MsG0680034609.01.T01
Chr6 exon 91225234 91225484 91225234 ID=MsG0680034609.01.T01:exon:5029;Parent=MsG0680034609.01.T01
Chr6 exon 91227738 91227769 91227738 ID=MsG0680034609.01.T01:exon:5028;Parent=MsG0680034609.01.T01
Chr6 exon 91229200 91229442 91229200 ID=MsG0680034609.01.T01:exon:5027;Parent=MsG0680034609.01.T01
Chr6 five_prime_UTR 91229288 91229442 91229288 ID=MsG0680034609.01.T01:five_prime_utr;Parent=MsG0680034609.01.T01
Chr6 CDS 91229200 91229287 91229200 ID=MsG0680034609.01.T01:cds;Parent=MsG0680034609.01.T01
Chr6 CDS 91227738 91227769 91227738 ID=MsG0680034609.01.T01:cds;Parent=MsG0680034609.01.T01
Chr6 CDS 91225234 91225484 91225234 ID=MsG0680034609.01.T01:cds;Parent=MsG0680034609.01.T01
Chr6 CDS 91224908 91225007 91224908 ID=MsG0680034609.01.T01:cds;Parent=MsG0680034609.01.T01
Chr6 CDS 91224739 91224752 91224739 ID=MsG0680034609.01.T01:cds;Parent=MsG0680034609.01.T01
Chr6 CDS 91223992 91224052 91223992 ID=MsG0680034609.01.T01:cds;Parent=MsG0680034609.01.T01
Chr6 CDS 91223520 91223705 91223520 ID=MsG0680034609.01.T01:cds;Parent=MsG0680034609.01.T01
Gene Sequence

>MsG0680034609.01.T01

ATGGAAAGAGAATTCCTTGGCTTCAGTTCCAAAAATAGTCCATGGACTACCATGAAAGAAGATGCTTCCAACAAACCAAAAGACCAAGTGTTGCCAGTGGGTGTACGTGTCAATGTGAGTGAAAATTTGGCCATAAAGCAAGTAGAAAACAAGCATGGAATTACAATTTATCCTATGCAAAGTTCTGATGCAAAATCAATTTGCAATCAAGAAGCAAGAACATTTCAGTTTCAAACCAATCTAATCATGTTATTACTGGAATCAACATGGTTAATTCAGTTTCAAACTCACAAACTTTTGGTTCAAAATCCTCTGCCACACTTTATCTGTTCTCCATCCAAAGGTTCCATAGTTGGCTCTACTGACTTAAGGAGTAGGAATTGTTCCAAATCCAATGGTACTACACCTGCTCAGTTGACCATATTTTATGGTGGTACAGTATGTGTGTATGATGACATCTCTCCTGAGAAGGCTAAGGCTATCATTTGGCTTGCCTCAAGCGCGAAAAGCATCGCTGACTCGGTTTTTGGAGAAGCGAAAGGAAAGGCTGATGCATTTTTTTTGTACTTACTTAGGGCAATGAGCACATCACCATACTATATGAGCAAAAAATCACCTGAATGCAGCACTGGATCAGACAATGCTAGTTTCTCCATTGATTTCTCTGGTTCAAGTACTCAACCACCCACCAATTTGCCTTTAAGAAGAACATGTATGGAAGTGATTAGATAA
Protein sequence

>MsG0680034609.01.T01

MEREFLGFSSKNSPWTTMKEDASNKPKDQVLPVGVRVNVSENLAIKQVENKHGITIYPMQSSDAKSICNQEARTFQFQTNLIMLLLESTWLIQFQTHKLLVQNPLPHFICSPSKGSIVGSTDLRSRNCSKSNGTTPAQLTIFYGGTVCVYDDISPEKAKAIIWLASSAKSIADSVFGEAKGKADAFFLYLLRAMSTSPYYMSKKSPECSTGSDNASFSIDFSGSSTQPPTNLPLRRTCMEVIR*