AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034866.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034866.01.T01 MTR_6g478120 99.769 432 1 0 116 547 1 432 0.0 895
MsG0680034866.01.T01 MTR_4g103720 79.532 513 66 2 116 590 1 512 0.0 834
MsG0680034866.01.T01 MTR_7g084860 90.210 429 41 1 116 544 1 428 0.0 812
MsG0680034866.01.T01 MTR_6g478090 74.074 243 41 1 306 548 4 224 7.10e-116 345
MsG0680034866.01.T01 MTR_4g103730 80.892 157 27 1 246 402 6 159 2.02e-82 256
MsG0680034866.01.T01 MTR_6g081000 63.399 153 55 1 247 399 4 155 4.48e-57 189
MsG0680034866.01.T01 MTR_7g109660 64.286 84 25 3 150 229 16 98 4.31e-24 98.2
MsG0680034866.01.T01 MTR_4g051538 88.136 59 7 0 1 59 1 59 2.33e-20 90.9
MsG0680034866.01.T01 MTR_3g052920 52.830 53 25 0 5 57 5 57 6.09e-11 63.2
MsG0680034866.01.T01 MTR_8g043650 49.123 57 29 0 1 57 1 57 6.85e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034866.01.T01 AT3G26618 89.953 428 42 1 116 543 1 427 0.0 807
MsG0680034866.01.T01 AT1G12920 89.412 425 45 0 119 543 2 426 0.0 803
MsG0680034866.01.T01 AT5G47880 88.605 430 47 1 116 545 1 428 0.0 800
MsG0680034866.01.T01 AT5G47880 88.605 430 47 1 116 545 1 428 0.0 800

Find 136 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGAGTTAACAACACTTTC+AGG 0.202264 6:+95874929 MsG0680034866.01.T01:CDS
TTCACATCAGTCATAACTTT+TGG 0.216504 6:-95881237 None:intergenic
CCTCCTCTTCCATGTTTCTT+TGG 0.241799 6:-95880163 None:intergenic
TGTAACTTTCAAGCTATTAT+TGG 0.252116 6:+95881381 MsG0680034866.01.T01:CDS
GGTAAGTTTCAATCTACTAT+TGG 0.253338 6:+95881357 MsG0680034866.01.T01:CDS
TGAGCCTTCTTGTGATTTAT+TGG 0.257996 6:-95880818 None:intergenic
CCACACCTCAATGTTCTTAT+CGG 0.267120 6:-95879657 None:intergenic
TCATAATCAGCAGCAGTTTC+AGG 0.274251 6:-95880718 None:intergenic
GACGGTAATGGCACATTGTT+CGG 0.275467 6:+95880088 MsG0680034866.01.T01:CDS
CTTGAAGCTGCCAGAGGAAA+TGG 0.318704 6:+95879704 MsG0680034866.01.T01:CDS
TTGGAATCTGATGACAAGTT+TGG 0.321164 6:+95880052 MsG0680034866.01.T01:CDS
GTCCAATGTCAAGTTCATTC+AGG 0.334220 6:+95880465 MsG0680034866.01.T01:CDS
TGAAGCTCTCAATGAGCTAT+TGG 0.342689 6:+95880033 MsG0680034866.01.T01:CDS
TAGCAGGATTGATATAAAAC+TGG 0.345579 6:-95880264 None:intergenic
TGCTGCTGATTATGAGGTTC+AGG 0.348021 6:+95880726 MsG0680034866.01.T01:CDS
GTAAGTTTCAATCTACTATT+GGG 0.352266 6:+95881358 MsG0680034866.01.T01:CDS
ACTCATTGTCTGGGAAAATC+TGG 0.360728 6:+95880597 MsG0680034866.01.T01:CDS
TATGTTTGATCCCCGTCTTC+AGG 0.362054 6:+95880360 MsG0680034866.01.T01:CDS
GACATGCTGGGAAATGAATA+AGG 0.363549 6:-95881413 None:intergenic
GAGGAAATCAGTCAGGATAC+TGG 0.367881 6:+95880514 MsG0680034866.01.T01:CDS
CTCGTGTTACTAAGATGCTT+GGG 0.376290 6:+95879771 MsG0680034866.01.T01:CDS
ACAAATTTCAGCAACATTGC+CGG 0.383035 6:+95881305 MsG0680034866.01.T01:CDS
ATTCAGGAGAAACGCTTGAT+TGG 0.384956 6:+95880481 MsG0680034866.01.T01:CDS
CTGTTGAGACACTCATTGTC+TGG 0.387541 6:+95880587 MsG0680034866.01.T01:CDS
GGTGAAAATCTATCATTTCC+TGG 0.388570 6:+95881336 MsG0680034866.01.T01:CDS
AAGATGCTTGGGGATGAGTT+TGG 0.392595 6:+95879782 MsG0680034866.01.T01:CDS
GACGCGTTGATAGGTCTAAA+TGG 0.397454 6:-95879980 None:intergenic
TGATGATGGGAAGGAGAAAA+AGG 0.404445 6:+95879940 MsG0680034866.01.T01:CDS
ACGGTAATGGCACATTGTTC+GGG 0.404903 6:+95880089 MsG0680034866.01.T01:CDS
GTGTCTGGATTAATACTTGC+TGG 0.410830 6:+95880301 MsG0680034866.01.T01:CDS
AGCAAAATTTAGAGACATGC+TGG 0.420223 6:-95881426 None:intergenic
CTTGATTGGAAAATACTTTG+AGG 0.420441 6:+95880495 MsG0680034866.01.T01:CDS
TTTCAAAATATTAGTGGTGT+TGG 0.421644 6:+95878777 MsG0680034866.01.T01:CDS
GCAAATGAATACAGACGGTT+TGG 0.424719 6:+95880775 MsG0680034866.01.T01:CDS
TTCTCCTGATGTTCCATCTC+CGG 0.425544 6:+95881278 MsG0680034866.01.T01:CDS
ACCAGCCAGCCTAATGTGTC+TGG 0.427037 6:+95880286 MsG0680034866.01.T01:CDS
AATGTTGTAGATGTATCTTA+TGG 0.429006 6:+95880394 MsG0680034866.01.T01:CDS
AGTATTAATCCAGACACATT+AGG 0.434638 6:-95880295 None:intergenic
ATCTCTAAAATTGCTCTGCT+TGG 0.444432 6:-95880695 None:intergenic
TTTCCTCTTGATGACCTCTT+CGG 0.445330 6:-95874818 None:intergenic
GCTCGTGTTACTAAGATGCT+TGG 0.447706 6:+95879770 MsG0680034866.01.T01:CDS
GCATTTACAACGAGAAAGTC+TGG 0.455029 6:+95874890 MsG0680034866.01.T01:CDS
GTATACAAAACAAGCCCGTT+TGG 0.457727 6:-95879902 None:intergenic
GTATCTTATGGAGGTGAGAA+TGG 0.458101 6:+95880406 MsG0680034866.01.T01:CDS
TTTATTGTCATGGACGGTAA+TGG 0.458590 6:+95880076 MsG0680034866.01.T01:CDS
GATACTGGGAAGTATGTCTT+TGG 0.462547 6:+95880529 MsG0680034866.01.T01:CDS
AGGTGAGAATGGGTTTAATC+AGG 0.466641 6:+95880417 MsG0680034866.01.T01:CDS
TTGAAGCTGCCAGAGGAAAT+GGG 0.467082 6:+95879705 MsG0680034866.01.T01:CDS
TGTCAGTGTCCGTGTATCAT+AGG 0.467585 6:+95878802 MsG0680034866.01.T01:CDS
GGTACAATTGTGACTGATGA+TGG 0.473895 6:+95879926 MsG0680034866.01.T01:CDS
ACATTAGGCTGGCTGGTAGC+AGG 0.480467 6:-95880280 None:intergenic
ACTCTACAAGCTCTGGATGC+TGG 0.481002 6:+95880562 MsG0680034866.01.T01:CDS
TCTAAATGGTTCAAAATCAA+TGG 0.481880 6:-95879966 None:intergenic
CTGAGTTAACAACACTTTCA+GGG 0.482866 6:+95874930 MsG0680034866.01.T01:CDS
GCACAGGCACTTCTCAGATT+AGG 0.484639 6:+95878700 MsG0680034866.01.T01:intron
TGATGATACTCTACAAGCTC+TGG 0.486204 6:+95880555 MsG0680034866.01.T01:CDS
TGAAACTGCTGCTGATTATG+AGG 0.492511 6:+95880720 MsG0680034866.01.T01:CDS
ATAACAAGGTCCCTCCAAAC+GGG 0.492991 6:+95879888 MsG0680034866.01.T01:CDS
CTCCTGAATGAACTTGACAT+TGG 0.497293 6:-95880467 None:intergenic
TCCAGACACATTAGGCTGGC+TGG 0.497808 6:-95880287 None:intergenic
TATTCTCATGCTTTCTCCAA+CGG 0.500320 6:+95874964 MsG0680034866.01.T01:CDS
ATTAGGTGTGTATATGTGTC+GGG 0.501296 6:+95878717 MsG0680034866.01.T01:CDS
TATCTTATGGAGGTGAGAAT+GGG 0.508072 6:+95880407 MsG0680034866.01.T01:CDS
AGATAGAGAGACGCGTTGAT+AGG 0.508692 6:-95879989 None:intergenic
TATAACAAGGTCCCTCCAAA+CGG 0.510422 6:+95879887 MsG0680034866.01.T01:CDS
AAAAGACGTCTCTGTTGGAC+TGG 0.523849 6:+95880749 MsG0680034866.01.T01:CDS
GAAAATCAAGAAATTGATCA+AGG 0.525050 6:+95879679 MsG0680034866.01.T01:CDS
GCAACATTGCCGGCAACAGC+TGG 0.529099 6:+95881315 MsG0680034866.01.T01:CDS
ACTGCCGGAGATGGAACATC+AGG 0.534120 6:-95881282 None:intergenic
TCAGGAAAAGACGTCTCTGT+TGG 0.537146 6:+95880744 MsG0680034866.01.T01:CDS
GTGAATCGACAGTCCGTGCT+TGG 0.537300 6:+95879830 MsG0680034866.01.T01:CDS
CAAGTTTGGATTTATTGTCA+TGG 0.537704 6:+95880066 MsG0680034866.01.T01:CDS
TGCGAAGACGAGCAAAACGC+AGG 0.537796 6:-95880195 None:intergenic
CATACTCGTCCCATTTCCTC+TGG 0.540572 6:-95879714 None:intergenic
AGGAAATCAGTCAGGATACT+GGG 0.540734 6:+95880515 MsG0680034866.01.T01:CDS
ATACTTTGAGGAAATCAGTC+AGG 0.542832 6:+95880507 MsG0680034866.01.T01:CDS
GAAATTTGTACTGCCGGAGA+TGG 0.547909 6:-95881291 None:intergenic
AGTCTCTTATTGTTCAGAGA+TGG 0.554295 6:+95879619 MsG0680034866.01.T01:CDS
ACATTGTTCGGGACCTTGAG+TGG 0.555247 6:+95880100 MsG0680034866.01.T01:CDS
TACAAAACAAGCCCGTTTGG+AGG 0.555311 6:-95879899 None:intergenic
CTGCTTCAAACATCAAGAGT+AGG 0.557700 6:+95879807 MsG0680034866.01.T01:CDS
GATTAGGTGTGTATATGTGT+CGG 0.561339 6:+95878716 MsG0680034866.01.T01:CDS
ACAAAACAAGCCCGTTTGGA+GGG 0.562493 6:-95879898 None:intergenic
TTTGGATTTATTGTCATGGA+CGG 0.563669 6:+95880070 MsG0680034866.01.T01:CDS
CCAAAGAAACATGGAAGAGG+AGG 0.564155 6:+95880163 MsG0680034866.01.T01:CDS
GTGTATATGTGTCGGGCACA+CGG 0.567026 6:+95878724 MsG0680034866.01.T01:CDS
GTTGCTGAAATTTGTACTGC+CGG 0.569002 6:-95881297 None:intergenic
GTCACCAATAAATCACAAGA+AGG 0.574684 6:+95880814 MsG0680034866.01.T01:CDS
TGTTGAGACACTCATTGTCT+GGG 0.577039 6:+95880588 MsG0680034866.01.T01:CDS
CTTCCAAAGAAACATGGAAG+AGG 0.578672 6:+95880160 MsG0680034866.01.T01:CDS
TAAGCACTTCAACAAGGAGC+AGG 0.580224 6:+95880669 MsG0680034866.01.T01:CDS
TGCTTCAAACATCAAGAGTA+GGG 0.580414 6:+95879808 MsG0680034866.01.T01:CDS
GAACATCAGGAGAACAAGCA+AGG 0.581927 6:-95881269 None:intergenic
GAGTAAGAATGCCGCCGAAG+AGG 0.583357 6:+95874804 None:intergenic
GTGCTTAATGACAACTTCAC+CGG 0.585464 6:-95880653 None:intergenic
CTCTCTTGTATTACCACTCA+AGG 0.586518 6:-95880113 None:intergenic
TTAATCCAGACACATTAGGC+TGG 0.588570 6:-95880291 None:intergenic
GTACGAATTGTTTATGACAT+GGG 0.588970 6:+95878829 MsG0680034866.01.T01:CDS
CAAATGTTCTCATATCAAGC+TGG 0.588987 6:-95880885 None:intergenic
AGAAGTGATTGCACCAAGCA+CGG 0.591046 6:-95879843 None:intergenic
GCAAAATTTAGAGACATGCT+GGG 0.596713 6:-95881425 None:intergenic
GTCGATCTTCCAAAGAAACA+TGG 0.600756 6:+95880154 MsG0680034866.01.T01:CDS
CCTCTTGATGACCTCTTCGG+CGG 0.600952 6:-95874815 None:intergenic
CAATCACTTCTGCTCAGCAG+AGG 0.605739 6:+95879855 MsG0680034866.01.T01:CDS
CAAAGAAACATGGAAGAGGA+GGG 0.606969 6:+95880164 MsG0680034866.01.T01:CDS
GAGGCTTAAGCTTTATAACA+AGG 0.607440 6:+95879874 MsG0680034866.01.T01:CDS
TGAGTTAACAACACTTTCAG+GGG 0.607847 6:+95874931 MsG0680034866.01.T01:CDS
GCGAAGACGAGCAAAACGCA+GGG 0.608327 6:-95880194 None:intergenic
TACGAATTGTTTATGACATG+GGG 0.610380 6:+95878830 MsG0680034866.01.T01:CDS
AGCAGGATTGATATAAAACT+GGG 0.614058 6:-95880263 None:intergenic
GGTTTGCAAATGAATACAGA+CGG 0.619362 6:+95880770 MsG0680034866.01.T01:CDS
CACGAGCAATTTGATCACGC+GGG 0.620475 6:-95879754 None:intergenic
TCGTGTTACTAAGATGCTTG+GGG 0.628751 6:+95879772 MsG0680034866.01.T01:CDS
ATAGTAGATTGAAACTTACC+AGG 0.632693 6:-95881354 None:intergenic
TGTCATTAAGCACTTCAACA+AGG 0.635973 6:+95880663 MsG0680034866.01.T01:CDS
TGATACCGATAAGAACATTG+AGG 0.637369 6:+95879652 MsG0680034866.01.T01:CDS
GTTGTAGATGTATCTTATGG+AGG 0.639008 6:+95880397 MsG0680034866.01.T01:CDS
AATTGTGACTGATGATGGGA+AGG 0.639330 6:+95879931 MsG0680034866.01.T01:CDS
AACATCAGGAGAACAAGCAA+GGG 0.639371 6:-95881268 None:intergenic
CCGATAAGAACATTGAGGTG+TGG 0.639898 6:+95879657 MsG0680034866.01.T01:CDS
GTACAATTGTGACTGATGAT+GGG 0.643058 6:+95879927 MsG0680034866.01.T01:CDS
ACGAGCAATTTGATCACGCG+GGG 0.645358 6:-95879753 None:intergenic
CGTACCACACCTATGATACA+CGG 0.645852 6:-95878811 None:intergenic
GGTACGAATTGTTTATGACA+TGG 0.652609 6:+95878828 MsG0680034866.01.T01:CDS
AAAAGCACATAATTCCGTGT+CGG 0.657134 6:-95878755 None:intergenic
AAGGCTCTTGAAGCTGCCAG+AGG 0.659221 6:+95879698 MsG0680034866.01.T01:CDS
ACACGGACATGACACCGACA+CGG 0.661321 6:+95878741 MsG0680034866.01.T01:CDS
CCGCCGAAGAGGTCATCAAG+AGG 0.664394 6:+95874815 MsG0680034866.01.T01:CDS
AGAAGCGTCATAACTATGTG+AGG 0.666904 6:+95880221 MsG0680034866.01.T01:CDS
TGAAAGTGTTGTTAACTCAG+AGG 0.669188 6:-95874927 None:intergenic
CTTGAGTGGTAATACAAGAG+AGG 0.672414 6:+95880114 MsG0680034866.01.T01:CDS
GTGTCCGTGTATCATAGGTG+TGG 0.678405 6:+95878807 MsG0680034866.01.T01:CDS
ACACGAGCAATTTGATCACG+CGG 0.684257 6:-95879755 None:intergenic
AAGCATGAGAATATCAACTG+AGG 0.718686 6:-95874954 None:intergenic
AAAGTCTGGAATTTACAACA+AGG 0.757794 6:+95874904 MsG0680034866.01.T01:CDS
CGAGCAATTTGATCACGCGG+GGG 0.766587 6:-95879752 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAAAAAATTAAAAAC+AGG - Chr6:95875546-95875565 None:intergenic 10.0%
!! TTATTATTATTATTGTAAGT+CGG - Chr6:95876201-95876220 None:intergenic 10.0%
!!! GTTTGAAAATTTTATTTTTA+CGG - Chr6:95877555-95877574 None:intergenic 10.0%
!!! TTTAAAATAATTAGACAAAA+AGG - Chr6:95875393-95875412 None:intergenic 10.0%
!!! TTTATATTAAAAAAGTACAA+CGG - Chr6:95876152-95876171 None:intergenic 10.0%
!! AAAAAAAAAGTTTAGGAAAT+AGG - Chr6:95877352-95877371 None:intergenic 15.0%
!! ATAAATAAAGTCTTGAAAAA+TGG + Chr6:95875275-95875294 MsG0680034866.01.T01:intron 15.0%
!! ATAAATACCAACAAAAATTA+TGG - Chr6:95881201-95881220 None:intergenic 15.0%
!! ATTAAACAAAAAAATACACA+TGG - Chr6:95879405-95879424 None:intergenic 15.0%
!! TCATTAAAAACTAAACTAAA+TGG + Chr6:95877002-95877021 MsG0680034866.01.T01:intron 15.0%
!! TCTCAAAAATAAAATATACA+AGG + Chr6:95877838-95877857 MsG0680034866.01.T01:intron 15.0%
!!! AGTTTAATTTTTTTTTCCTT+TGG + Chr6:95879553-95879572 MsG0680034866.01.T01:intron 15.0%
!!! ATCATGAATATTTTCAATAA+TGG + Chr6:95876438-95876457 MsG0680034866.01.T01:intron 15.0%
!!! CTAATTATTTTAAATGAATC+TGG + Chr6:95875399-95875418 MsG0680034866.01.T01:intron 15.0%
!!! TGAAAAAAATGATAATCTTT+TGG + Chr6:95875100-95875119 MsG0680034866.01.T01:intron 15.0%
!!! TTAATTAATTCTCTTTTTGT+TGG + Chr6:95879506-95879525 MsG0680034866.01.T01:intron 15.0%
!!! TTTCTTTTTTATTTCTTTCA+AGG + Chr6:95879591-95879610 MsG0680034866.01.T01:intron 15.0%
!!! TTTTCTTTATTATTTTTGTG+TGG + Chr6:95876030-95876049 MsG0680034866.01.T01:intron 15.0%
!! AATACAAGTAAATATAAACC+AGG - Chr6:95875981-95876000 None:intergenic 20.0%
!! ACGTAAAAATTTGAAGATAT+TGG + Chr6:95875148-95875167 MsG0680034866.01.T01:intron 20.0%
!! ATCTGTAATTATAAGAAGTA+TGG + Chr6:95879142-95879161 MsG0680034866.01.T01:intron 20.0%
!! CGAAAGAATTAGTAATTATA+GGG - Chr6:95876868-95876887 None:intergenic 20.0%
!! TAAAAACTAAACTAAATGGA+TGG + Chr6:95877006-95877025 MsG0680034866.01.T01:intron 20.0%
!! TAATAACAAAGTTTGAACTT+AGG - Chr6:95876580-95876599 None:intergenic 20.0%
!! TCGAAAGAATTAGTAATTAT+AGG - Chr6:95876869-95876888 None:intergenic 20.0%
!! TCTTCTTAATTTCTATTACT+AGG + Chr6:95875688-95875707 MsG0680034866.01.T01:intron 20.0%
!! TGATTGAAAACAATATGTAT+TGG + Chr6:95877618-95877637 MsG0680034866.01.T01:intron 20.0%
!!! ACATATTTTTCTATTATACC+TGG + Chr6:95881150-95881169 MsG0680034866.01.T01:intron 20.0%
!!! ATCGATTCATATGAATTTTA+TGG + Chr6:95878188-95878207 MsG0680034866.01.T01:intron 20.0%
!!! ATTAGTTCCATAATTTTTGT+TGG + Chr6:95881191-95881210 MsG0680034866.01.T01:intron 20.0%
!!! CTTTTGATAATGATTCTATT+TGG + Chr6:95876118-95876137 MsG0680034866.01.T01:intron 20.0%
!!! GCATACTTGAAATATTTTAA+AGG + Chr6:95876794-95876813 MsG0680034866.01.T01:intron 20.0%
!!! GTTTTAAAAAATAGTACTAC+CGG + Chr6:95880634-95880653 MsG0680034866.01.T01:CDS 20.0%
!!! TAACTCTTATTTTAATCCAT+TGG + Chr6:95876675-95876694 MsG0680034866.01.T01:intron 20.0%
!!! TATTTGATTTAGTGTACTTA+AGG + Chr6:95878364-95878383 MsG0680034866.01.T01:intron 20.0%
!!! TCATTTTGCTGTATAATTTT+CGG - Chr6:95875083-95875102 None:intergenic 20.0%
!!! TCTGTAATTATAAGAAGTAT+GGG + Chr6:95879143-95879162 MsG0680034866.01.T01:intron 20.0%
!!! TGCTTTTTTCAAAATATTAG+TGG + Chr6:95878771-95878790 MsG0680034866.01.T01:CDS 20.0%
!!! TTTTTTCCTTGAACAATTAA+CGG - Chr6:95877037-95877056 None:intergenic 20.0%
! AAAAAGATTGAATCCATGAA+AGG - Chr6:95875776-95875795 None:intergenic 25.0%
! AAACTATAATGGTAAAAGCT+GGG - Chr6:95875640-95875659 None:intergenic 25.0%
! AAAGAAGATAGGTAAATTTG+TGG - Chr6:95877062-95877081 None:intergenic 25.0%
! AACAGAAAAGATCATGAAAT+TGG + Chr6:95875500-95875519 MsG0680034866.01.T01:intron 25.0%
! AATAAAGTCTTGAAAAATGG+AGG + Chr6:95875278-95875297 MsG0680034866.01.T01:intron 25.0%
! AATGTTGTAGATGTATCTTA+TGG + Chr6:95880394-95880413 MsG0680034866.01.T01:CDS 25.0%
! ACAAGAAATGTTACAAGAAA+GGG - Chr6:95881118-95881137 None:intergenic 25.0%
! ACCATTATAGTTTCACTTAT+GGG + Chr6:95875647-95875666 MsG0680034866.01.T01:intron 25.0%
! ATAAAATATACAAGGACTAG+AGG + Chr6:95877846-95877865 MsG0680034866.01.T01:intron 25.0%
! ATGATCAGATAAAGATGAAT+TGG + Chr6:95875915-95875934 MsG0680034866.01.T01:intron 25.0%
! CCTAACAAAGAGAAATAAAA+TGG + Chr6:95877449-95877468 MsG0680034866.01.T01:intron 25.0%
! CTGTTGAGAAGTAAAAAATT+CGG - Chr6:95877732-95877751 None:intergenic 25.0%
! GAAAATCAAGAAATTGATCA+AGG + Chr6:95879679-95879698 MsG0680034866.01.T01:CDS 25.0%
! GTAAGTTTCAATCTACTATT+GGG + Chr6:95881358-95881377 MsG0680034866.01.T01:CDS 25.0%
! TAAAATATACAAGGACTAGA+GGG + Chr6:95877847-95877866 MsG0680034866.01.T01:intron 25.0%
! TACAAGAAATGTTACAAGAA+AGG - Chr6:95881119-95881138 None:intergenic 25.0%
! TACCATTATAGTTTCACTTA+TGG + Chr6:95875646-95875665 MsG0680034866.01.T01:intron 25.0%
! TCTAAATGGTTCAAAATCAA+TGG - Chr6:95879969-95879988 None:intergenic 25.0%
! TCTAACCTTTCATTTCTTAT+AGG + Chr6:95877255-95877274 MsG0680034866.01.T01:intron 25.0%
! TCTTATGATATAGAAACACA+AGG + Chr6:95875829-95875848 MsG0680034866.01.T01:intron 25.0%
! TCTTGTTAATGAAAGAAGAT+AGG - Chr6:95877073-95877092 None:intergenic 25.0%
! TGTAACTTTCAAGCTATTAT+TGG + Chr6:95881381-95881400 MsG0680034866.01.T01:CDS 25.0%
! TGTTGAGAAGTAAAAAATTC+GGG - Chr6:95877731-95877750 None:intergenic 25.0%
! TTTATTTGTGACAACAACTA+AGG - Chr6:95875252-95875271 None:intergenic 25.0%
! TTTCAAAATATTAGTGGTGT+TGG + Chr6:95878777-95878796 MsG0680034866.01.T01:CDS 25.0%
!! AAATAGTCTTAACTCTTTAG+CGG - Chr6:95878927-95878946 None:intergenic 25.0%
!! AAGATGGTTTTCCATAAAAA+TGG - Chr6:95874995-95875014 None:intergenic 25.0%
!! AATTTAAGACAATGTTACGT+GGG + Chr6:95879010-95879029 MsG0680034866.01.T01:intron 25.0%
!! ACTTTGATTTATTGTCTTGT+AGG - Chr6:95876335-95876354 None:intergenic 25.0%
!! CAACTATTTTATCATTTGGA+TGG + Chr6:95875953-95875972 MsG0680034866.01.T01:intron 25.0%
!! CATTTTTATCTTCGTGAATA+AGG + Chr6:95876910-95876929 MsG0680034866.01.T01:intron 25.0%
!! GCTTCAACTATTTTATCATT+TGG + Chr6:95875949-95875968 MsG0680034866.01.T01:intron 25.0%
!! TTCAATCTTTTTGATCCAAA+AGG + Chr6:95875784-95875803 MsG0680034866.01.T01:intron 25.0%
!! TTTGTTATAGATTCAGAAGA+TGG - Chr6:95875011-95875030 None:intergenic 25.0%
!! TTTGTTTGATTTACCTTTCT+AGG + Chr6:95878152-95878171 MsG0680034866.01.T01:intron 25.0%
!! TTTTGCTTGAAATATTCTAG+CGG + Chr6:95875562-95875581 MsG0680034866.01.T01:intron 25.0%
!!! AAATCATGCTTATGTTTTTG+AGG + Chr6:95875475-95875494 MsG0680034866.01.T01:intron 25.0%
!!! CCATTTTATTTCTCTTTGTT+AGG - Chr6:95877452-95877471 None:intergenic 25.0%
!!! GATATGTTTGTTTGAGTTTT+TGG + Chr6:95879305-95879324 MsG0680034866.01.T01:intron 25.0%
!!! TGTTTTGGGAGATATTTTTT+GGG + Chr6:95879199-95879218 MsG0680034866.01.T01:intron 25.0%
!!! TTTGATGATTTTTCTGATGA+TGG + Chr6:95880904-95880923 MsG0680034866.01.T01:CDS 25.0%
!!! TTTTTGTTTAATTCTCTCTG+TGG + Chr6:95879413-95879432 MsG0680034866.01.T01:intron 25.0%
AACATATCAGCTATATCCAA+AGG - Chr6:95879572-95879591 None:intergenic 30.0%
AATGTAACTGACACTAAATG+TGG - Chr6:95876381-95876400 None:intergenic 30.0%
AGCAGGATTGATATAAAACT+GGG - Chr6:95880266-95880285 None:intergenic 30.0%
AGTATTAATCCAGACACATT+AGG - Chr6:95880298-95880317 None:intergenic 30.0%
ATAGTAGATTGAAACTTACC+AGG - Chr6:95881357-95881376 None:intergenic 30.0%
ATCAAGAGGAAAACAAAAAG+TGG + Chr6:95874829-95874848 MsG0680034866.01.T01:CDS 30.0%
ATCATTTCCTCTTCTATTGA+AGG - Chr6:95875056-95875075 None:intergenic 30.0%
CAAGTTTGGATTTATTGTCA+TGG + Chr6:95880066-95880085 MsG0680034866.01.T01:CDS 30.0%
CCATAGAAAAGATCTCAAAA+CGG + Chr6:95877889-95877908 MsG0680034866.01.T01:intron 30.0%
CTTGATTGGAAAATACTTTG+AGG + Chr6:95880495-95880514 MsG0680034866.01.T01:CDS 30.0%
GAAACTATAATGGTAAAAGC+TGG - Chr6:95875641-95875660 None:intergenic 30.0%
GAAAGTTTGAATGCAAAACA+AGG + Chr6:95881079-95881098 MsG0680034866.01.T01:intron 30.0%
GGTAAGTTTCAATCTACTAT+TGG + Chr6:95881357-95881376 MsG0680034866.01.T01:CDS 30.0%
GTACGAATTGTTTATGACAT+GGG + Chr6:95878829-95878848 MsG0680034866.01.T01:CDS 30.0%
GTTGAGAAGTAAAAAATTCG+GGG - Chr6:95877730-95877749 None:intergenic 30.0%
TACGAATTGTTTATGACATG+GGG + Chr6:95878830-95878849 MsG0680034866.01.T01:CDS 30.0%
TAGAATTTGTGAATTGAGCT+GGG + Chr6:95878963-95878982 MsG0680034866.01.T01:intron 30.0%
TAGCAGGATTGATATAAAAC+TGG - Chr6:95880267-95880286 None:intergenic 30.0%
TATAGGGATGAAAACTCAAA+TGG - Chr6:95876852-95876871 None:intergenic 30.0%
TATCAAGGACAATATTTGCA+GGG + Chr6:95877691-95877710 MsG0680034866.01.T01:intron 30.0%
TATGTATTGTCTTCCTTTCA+TGG + Chr6:95875760-95875779 MsG0680034866.01.T01:intron 30.0%
TATTGGAAAGATCTGGATAT+TGG + Chr6:95875165-95875184 MsG0680034866.01.T01:intron 30.0%
TCAAGTGTTCTTAAAACAGT+TGG + Chr6:95877664-95877683 MsG0680034866.01.T01:intron 30.0%
TCCCATAAGTGAAACTATAA+TGG - Chr6:95875651-95875670 None:intergenic 30.0%
TGAAAATCCTTCAATAGAAG+AGG + Chr6:95875046-95875065 MsG0680034866.01.T01:intron 30.0%
TGCAACCTATAAGAAATGAA+AGG - Chr6:95877263-95877282 None:intergenic 30.0%
TGCATTTAAGCAATCTCAAA+AGG - Chr6:95877169-95877188 None:intergenic 30.0%
TGTAGTAATTTCTACTATCG+AGG + Chr6:95875433-95875452 MsG0680034866.01.T01:intron 30.0%
TTAGAATTTGTGAATTGAGC+TGG + Chr6:95878962-95878981 MsG0680034866.01.T01:intron 30.0%
TTCATTTGTTTCATTGCCAA+TGG - Chr6:95876694-95876713 None:intergenic 30.0%
TTGAAGATATTGGAAAGATC+TGG + Chr6:95875158-95875177 MsG0680034866.01.T01:intron 30.0%
TTTCTTTCACTTGATCATAC+TGG - Chr6:95875220-95875239 None:intergenic 30.0%
TTTGGATTTATTGTCATGGA+CGG + Chr6:95880070-95880089 MsG0680034866.01.T01:CDS 30.0%
! AAAGTCTGGAATTTACAACA+AGG + Chr6:95874904-95874923 MsG0680034866.01.T01:CDS 30.0%
! AACGCAATTGGTTTATGTTT+AGG - Chr6:95877400-95877419 None:intergenic 30.0%
! AATAGAGTCTTGTGTGTTAT+TGG + Chr6:95879279-95879298 MsG0680034866.01.T01:intron 30.0%
! ACACTCACACATTAAACTTT+TGG + Chr6:95875587-95875606 MsG0680034866.01.T01:intron 30.0%
! CAATTTAAGACAATGTTACG+TGG + Chr6:95879009-95879028 MsG0680034866.01.T01:intron 30.0%
! CTTTTTGATCCAAAAGGTAA+AGG + Chr6:95875790-95875809 MsG0680034866.01.T01:intron 30.0%
! GACTTTTAAATCAACGCAAT+TGG - Chr6:95877412-95877431 None:intergenic 30.0%
! TCACATCAGTCATAACTTTT+GGG - Chr6:95881239-95881258 None:intergenic 30.0%
! TGTTGATCATTGTTGTTCTT+AGG + Chr6:95876716-95876735 MsG0680034866.01.T01:intron 30.0%
! TTCACATCAGTCATAACTTT+TGG - Chr6:95881240-95881259 None:intergenic 30.0%
! TTTTTCTTTCAATAGCTCAG+TGG - Chr6:95877776-95877795 None:intergenic 30.0%
!! ATGTTTGTTTGAGTTTTTGG+AGG + Chr6:95879308-95879327 MsG0680034866.01.T01:intron 30.0%
!! CAACGGTAAAACCATTTTTA+TGG + Chr6:95874981-95875000 MsG0680034866.01.T01:intron 30.0%
!! CATAAAAATGGTTTTACCGT+TGG - Chr6:95874983-95875002 None:intergenic 30.0%
!! GGTTTTTGTTGTGATTTTTG+TGG + Chr6:95878385-95878404 MsG0680034866.01.T01:intron 30.0%
!! TAAGTATTTTTGCCTGAAGA+CGG - Chr6:95880375-95880394 None:intergenic 30.0%
!! TGTTTGTTTGAGTTTTTGGA+GGG + Chr6:95879309-95879328 MsG0680034866.01.T01:intron 30.0%
!!! CGTTTTGAGATCTTTTCTAT+GGG - Chr6:95877891-95877910 None:intergenic 30.0%
!!! CTGTTTTGGGAGATATTTTT+TGG + Chr6:95879198-95879217 MsG0680034866.01.T01:intron 30.0%
!!! GTTTTGGGAGATATTTTTTG+GGG + Chr6:95879200-95879219 MsG0680034866.01.T01:intron 30.0%
!!! TTGCTTGAGTTACTTTTTGT+GGG - Chr6:95877207-95877226 None:intergenic 30.0%
AAGCATGAGAATATCAACTG+AGG - Chr6:95874957-95874976 None:intergenic 35.0%
ACAAATTTCAGCAACATTGC+CGG + Chr6:95881305-95881324 MsG0680034866.01.T01:CDS 35.0%
AGTCTCTTATTGTTCAGAGA+TGG + Chr6:95879619-95879638 MsG0680034866.01.T01:CDS 35.0%
ATAATAATAACCACCACCGA+TGG + Chr6:95876280-95876299 MsG0680034866.01.T01:intron 35.0%
ATCGAATCAACAATTCAGCT+AGG + Chr6:95877986-95878005 MsG0680034866.01.T01:intron 35.0%
ATTAGGTGTGTATATGTGTC+GGG + Chr6:95878717-95878736 MsG0680034866.01.T01:CDS 35.0%
CAAATGTTCTCATATCAAGC+TGG - Chr6:95880888-95880907 None:intergenic 35.0%
CTGAGTTAACAACACTTTCA+GGG + Chr6:95874930-95874949 MsG0680034866.01.T01:CDS 35.0%
GAAATGCCGTTAATTGTTCA+AGG + Chr6:95877028-95877047 MsG0680034866.01.T01:intron 35.0%
GATTAGGTGTGTATATGTGT+CGG + Chr6:95878716-95878735 MsG0680034866.01.T01:CDS 35.0%
GCAGAATGAAAAACCTAGAA+AGG - Chr6:95878168-95878187 None:intergenic 35.0%
GGTACGAATTGTTTATGACA+TGG + Chr6:95878828-95878847 MsG0680034866.01.T01:CDS 35.0%
GGTGAAAATCTATCATTTCC+TGG + Chr6:95881336-95881355 MsG0680034866.01.T01:CDS 35.0%
GGTTTGCAAATGAATACAGA+CGG + Chr6:95880770-95880789 MsG0680034866.01.T01:CDS 35.0%
GTACAATTGTGACTGATGAT+GGG + Chr6:95879927-95879946 MsG0680034866.01.T01:CDS 35.0%
GTACGAATCATGTAAACAGA+AGG + Chr6:95878861-95878880 MsG0680034866.01.T01:intron 35.0%
GTATCAAGGACAATATTTGC+AGG + Chr6:95877690-95877709 MsG0680034866.01.T01:intron 35.0%
GTCACCAATAAATCACAAGA+AGG + Chr6:95880814-95880833 MsG0680034866.01.T01:CDS 35.0%
GTGTTCTTAAAACAGTTGGT+AGG + Chr6:95877668-95877687 MsG0680034866.01.T01:intron 35.0%
GTTGTAGATGTATCTTATGG+AGG + Chr6:95880397-95880416 MsG0680034866.01.T01:CDS 35.0%
TAAATGCACAGTGGCAATTT+GGG + Chr6:95877181-95877200 MsG0680034866.01.T01:intron 35.0%
TATCTTATGGAGGTGAGAAT+GGG + Chr6:95880407-95880426 MsG0680034866.01.T01:CDS 35.0%
TATTCTCATGCTTTCTCCAA+CGG + Chr6:95874964-95874983 MsG0680034866.01.T01:CDS 35.0%
TCAAGTCTCAACTGTGTTAT+TGG + Chr6:95876006-95876025 MsG0680034866.01.T01:intron 35.0%
TCGAATCAACAATTCAGCTA+GGG + Chr6:95877987-95878006 MsG0680034866.01.T01:intron 35.0%
TCTGAGTTAACAACACTTTC+AGG + Chr6:95874929-95874948 MsG0680034866.01.T01:CDS 35.0%
TGAGCCTTCTTGTGATTTAT+TGG - Chr6:95880821-95880840 None:intergenic 35.0%
TGAGTTAACAACACTTTCAG+GGG + Chr6:95874931-95874950 MsG0680034866.01.T01:CDS 35.0%
TGATACCGATAAGAACATTG+AGG + Chr6:95879652-95879671 MsG0680034866.01.T01:CDS 35.0%
TGATCCAAAAGGTAAAGGTA+TGG + Chr6:95875795-95875814 MsG0680034866.01.T01:intron 35.0%
TGCTTCAAACATCAAGAGTA+GGG + Chr6:95879808-95879827 MsG0680034866.01.T01:CDS 35.0%
TGGATATTGGTCAATTCAAG+AGG + Chr6:95875178-95875197 MsG0680034866.01.T01:intron 35.0%
TGTCATTAAGCACTTCAACA+AGG + Chr6:95880663-95880682 MsG0680034866.01.T01:CDS 35.0%
TTAAATGCACAGTGGCAATT+TGG + Chr6:95877180-95877199 MsG0680034866.01.T01:intron 35.0%
TTCAATGGGAGAACTAATCT+TGG - Chr6:95877230-95877249 None:intergenic 35.0%
TTCTCTTTGTTAGGTTCAGT+CGG - Chr6:95877443-95877462 None:intergenic 35.0%
TTGGAATCTGATGACAAGTT+TGG + Chr6:95880052-95880071 MsG0680034866.01.T01:CDS 35.0%
TTTATCATTTGGATGGTTCC+TGG + Chr6:95875960-95875979 MsG0680034866.01.T01:intron 35.0%
TTTATGACATGGGGTAATCT+GGG + Chr6:95878839-95878858 MsG0680034866.01.T01:intron 35.0%
TTTATTGTCATGGACGGTAA+TGG + Chr6:95880076-95880095 MsG0680034866.01.T01:CDS 35.0%
! AAAAGCACATAATTCCGTGT+CGG - Chr6:95878758-95878777 None:intergenic 35.0%
! AAAGGTTAGAGCATCTTCAA+TGG - Chr6:95877245-95877264 None:intergenic 35.0%
! AAATAGGTTGAAAATCCGTC+AGG - Chr6:95877336-95877355 None:intergenic 35.0%
! AAGGTTAGAGCATCTTCAAT+GGG - Chr6:95877244-95877263 None:intergenic 35.0%
! AGCTGGGATTTTATGTTTTG+GGG + Chr6:95878979-95878998 MsG0680034866.01.T01:intron 35.0%
! ATACTTTGAGGAAATCAGTC+AGG + Chr6:95880507-95880526 MsG0680034866.01.T01:CDS 35.0%
! ATTCCTGTTGCTTGCTTTAT+TGG + Chr6:95879111-95879130 MsG0680034866.01.T01:intron 35.0%
! CACATCAGTCATAACTTTTG+GGG - Chr6:95881238-95881257 None:intergenic 35.0%
! GAGCTGGGATTTTATGTTTT+GGG + Chr6:95878978-95878997 MsG0680034866.01.T01:intron 35.0%
! GAGGCTTAAGCTTTATAACA+AGG + Chr6:95879874-95879893 MsG0680034866.01.T01:CDS 35.0%
! TGAGCTGGGATTTTATGTTT+TGG + Chr6:95878977-95878996 MsG0680034866.01.T01:intron 35.0%
! TTTGGATAAAAAGCATGCTG+CGG + Chr6:95875118-95875137 MsG0680034866.01.T01:intron 35.0%
! TTTTGGACAAGAGATGTTGT+TGG + Chr6:95875604-95875623 MsG0680034866.01.T01:intron 35.0%
!! AAAACAGTTGGTAGGTATCA+AGG + Chr6:95877676-95877695 MsG0680034866.01.T01:intron 35.0%
!! AAGTATTTTTGCCTGAAGAC+GGG - Chr6:95880374-95880393 None:intergenic 35.0%
!! ATCTCTAAAATTGCTCTGCT+TGG - Chr6:95880698-95880717 None:intergenic 35.0%
!! ATTCGTTTTGATGATTGAGC+TGG + Chr6:95879169-95879188 MsG0680034866.01.T01:intron 35.0%
!! TGAAAGTGTTGTTAACTCAG+AGG - Chr6:95874930-95874949 None:intergenic 35.0%
!!! CCGTTTTGAGATCTTTTCTA+TGG - Chr6:95877892-95877911 None:intergenic 35.0%
!!! GATGATTTTTCTGATGATGG+AGG + Chr6:95880907-95880926 MsG0680034866.01.T01:CDS 35.0%
!!! GGAGATATTTTTTGGGGAAA+AGG + Chr6:95879206-95879225 MsG0680034866.01.T01:intron 35.0%
!!! GTGGTGATCTTTTTTTAGTG+TGG + Chr6:95876049-95876068 MsG0680034866.01.T01:intron 35.0%
!!! GTTGCTTGAGTTACTTTTTG+TGG - Chr6:95877208-95877227 None:intergenic 35.0%
AACATCAGGAGAACAAGCAA+GGG - Chr6:95881271-95881290 None:intergenic 40.0%
AAGATGTACACATACCACGA+GGG - Chr6:95875313-95875332 None:intergenic 40.0%
AATGAAATGCTTCCTACCAC+TGG + Chr6:95880954-95880973 MsG0680034866.01.T01:intron 40.0%
ACACAAGGAGTCAACCTTAT+TGG + Chr6:95875844-95875863 MsG0680034866.01.T01:intron 40.0%
ACTCATTGTCTGGGAAAATC+TGG + Chr6:95880597-95880616 MsG0680034866.01.T01:CDS 40.0%
AGGAAATCAGTCAGGATACT+GGG + Chr6:95880515-95880534 MsG0680034866.01.T01:CDS 40.0%
ATAATGTCGTCTCTGAGTCT+CGG + Chr6:95877294-95877313 MsG0680034866.01.T01:intron 40.0%
ATTCAGGAGAAACGCTTGAT+TGG + Chr6:95880481-95880500 MsG0680034866.01.T01:CDS 40.0%
CAAAGAAACATGGAAGAGGA+GGG + Chr6:95880164-95880183 MsG0680034866.01.T01:CDS 40.0%
CATCCAATAAAGCAAGCAAC+AGG - Chr6:95879117-95879136 None:intergenic 40.0%
CCACACCTCAATGTTCTTAT+CGG - Chr6:95879660-95879679 None:intergenic 40.0%
CTCCTAGAGTCAAAAACCAT+CGG - Chr6:95876299-95876318 None:intergenic 40.0%
CTCCTGAATGAACTTGACAT+TGG - Chr6:95880470-95880489 None:intergenic 40.0%
CTCTCTTGTATTACCACTCA+AGG - Chr6:95880116-95880135 None:intergenic 40.0%
CTGCTTCAAACATCAAGAGT+AGG + Chr6:95879807-95879826 MsG0680034866.01.T01:CDS 40.0%
CTTCCAAAGAAACATGGAAG+AGG + Chr6:95880160-95880179 MsG0680034866.01.T01:CDS 40.0%
CTTGAGTGGTAATACAAGAG+AGG + Chr6:95880114-95880133 MsG0680034866.01.T01:CDS 40.0%
GACATGCTGGGAAATGAATA+AGG - Chr6:95881416-95881435 None:intergenic 40.0%
GAGATTGCTTAAATGCACAG+TGG + Chr6:95877172-95877191 MsG0680034866.01.T01:intron 40.0%
GCAAATGAATACAGACGGTT+TGG + Chr6:95880775-95880794 MsG0680034866.01.T01:CDS 40.0%
GCATTTACAACGAGAAAGTC+TGG + Chr6:95874890-95874909 MsG0680034866.01.T01:CDS 40.0%
GGTACAATTGTGACTGATGA+TGG + Chr6:95879926-95879945 MsG0680034866.01.T01:CDS 40.0%
GTATACAAAACAAGCCCGTT+TGG - Chr6:95879905-95879924 None:intergenic 40.0%
GTATCTTATGGAGGTGAGAA+TGG + Chr6:95880406-95880425 MsG0680034866.01.T01:CDS 40.0%
GTCCAATGTCAAGTTCATTC+AGG + Chr6:95880465-95880484 MsG0680034866.01.T01:CDS 40.0%
GTCGATCTTCCAAAGAAACA+TGG + Chr6:95880154-95880173 MsG0680034866.01.T01:CDS 40.0%
GTGCTTAATGACAACTTCAC+CGG - Chr6:95880656-95880675 None:intergenic 40.0%
GTGTCTGGATTAATACTTGC+TGG + Chr6:95880301-95880320 MsG0680034866.01.T01:CDS 40.0%
GTTGCTGAAATTTGTACTGC+CGG - Chr6:95881300-95881319 None:intergenic 40.0%
GTTTATGACATGGGGTAATC+TGG + Chr6:95878838-95878857 MsG0680034866.01.T01:intron 40.0%
TATAACAAGGTCCCTCCAAA+CGG + Chr6:95879887-95879906 MsG0680034866.01.T01:CDS 40.0%
TCATAATCAGCAGCAGTTTC+AGG - Chr6:95880721-95880740 None:intergenic 40.0%
TCCAACTTTGGCCAAAATGA+CGG + Chr6:95877115-95877134 MsG0680034866.01.T01:intron 40.0%
TCTACTATCGAGGAACTGAA+TGG + Chr6:95875443-95875462 MsG0680034866.01.T01:intron 40.0%
TCTGACAACAAATTGACACC+AGG - Chr6:95881171-95881190 None:intergenic 40.0%
TCTGTGGTTAGCAGTATAGT+TGG + Chr6:95879341-95879360 MsG0680034866.01.T01:intron 40.0%
TCTTTCAATAGCTCAGTGGT+TGG - Chr6:95877772-95877791 None:intergenic 40.0%
TGAAGCTCTCAATGAGCTAT+TGG + Chr6:95880033-95880052 MsG0680034866.01.T01:CDS 40.0%
TGATGATACTCTACAAGCTC+TGG + Chr6:95880555-95880574 MsG0680034866.01.T01:CDS 40.0%
TGTTGAGACACTCATTGTCT+GGG + Chr6:95880588-95880607 MsG0680034866.01.T01:CDS 40.0%
TTAATCCAGACACATTAGGC+TGG - Chr6:95880294-95880313 None:intergenic 40.0%
! AAGAAGGCTCACAATTTTGC+AGG + Chr6:95880830-95880849 MsG0680034866.01.T01:CDS 40.0%
! AATCTCAAAAGGTGTGAGAG+AGG - Chr6:95877158-95877177 None:intergenic 40.0%
! AGAAGGCTCACAATTTTGCA+GGG + Chr6:95880831-95880850 MsG0680034866.01.T01:CDS 40.0%
! AGGTGAGAATGGGTTTAATC+AGG + Chr6:95880417-95880436 MsG0680034866.01.T01:CDS 40.0%
! CAAAGTACCTGCACTAGTAT+GGG + Chr6:95880993-95881012 MsG0680034866.01.T01:intron 40.0%
! CTCGTGTTACTAAGATGCTT+GGG + Chr6:95879771-95879790 MsG0680034866.01.T01:CDS 40.0%
! GAGCTGGATCTTTCTGTTTT+GGG + Chr6:95879185-95879204 MsG0680034866.01.T01:intron 40.0%
! GATACTGGGAAGTATGTCTT+TGG + Chr6:95880529-95880548 MsG0680034866.01.T01:CDS 40.0%
! GCAACCATACCTTTACCTTT+TGG - Chr6:95875802-95875821 None:intergenic 40.0%
! TCACAATTTTGCAGGGGTTT+TGG + Chr6:95880838-95880857 MsG0680034866.01.T01:CDS 40.0%
! TCGTGTTACTAAGATGCTTG+GGG + Chr6:95879772-95879791 MsG0680034866.01.T01:CDS 40.0%
! TGAAACTGCTGCTGATTATG+AGG + Chr6:95880720-95880739 MsG0680034866.01.T01:CDS 40.0%
! TGAGCTGGATCTTTCTGTTT+TGG + Chr6:95879184-95879203 MsG0680034866.01.T01:intron 40.0%
! TTTCCTCTTGATGACCTCTT+CGG - Chr6:95874821-95874840 None:intergenic 40.0%
!! AAACGATGAAAGTACCGTAG+CGG - Chr6:95878050-95878069 None:intergenic 40.0%
!! AATTGTGACTGATGATGGGA+AGG + Chr6:95879931-95879950 MsG0680034866.01.T01:CDS 40.0%
!! AATTTTGCAGGGGTTTTGGT+GGG + Chr6:95880842-95880861 MsG0680034866.01.T01:CDS 40.0%
!! AGAAGCGTCATAACTATGTG+AGG + Chr6:95880221-95880240 MsG0680034866.01.T01:CDS 40.0%
!! AGTATTTTTGCCTGAAGACG+GGG - Chr6:95880373-95880392 None:intergenic 40.0%
!! GCTGGGATTTTATGTTTTGG+GGG + Chr6:95878980-95878999 MsG0680034866.01.T01:intron 40.0%
!! TGATGATGGGAAGGAGAAAA+AGG + Chr6:95879940-95879959 MsG0680034866.01.T01:CDS 40.0%
!! TTGACGTGTTTGTTGTGACT+AGG + Chr6:95876963-95876982 MsG0680034866.01.T01:intron 40.0%
!!! AACGGGCTTGTTTTGTATAC+TGG + Chr6:95879905-95879924 MsG0680034866.01.T01:CDS 40.0%
AAAAGACGTCTCTGTTGGAC+TGG + Chr6:95880749-95880768 MsG0680034866.01.T01:CDS 45.0%
AAGATGCTTGGGGATGAGTT+TGG + Chr6:95879782-95879801 MsG0680034866.01.T01:CDS 45.0%
ACAAAACAAGCCCGTTTGGA+GGG - Chr6:95879901-95879920 None:intergenic 45.0%
ACACGAGCAATTTGATCACG+CGG - Chr6:95879758-95879777 None:intergenic 45.0%
AGAAGTGATTGCACCAAGCA+CGG - Chr6:95879846-95879865 None:intergenic 45.0%
ATAACAAGGTCCCTCCAAAC+GGG + Chr6:95879888-95879907 MsG0680034866.01.T01:CDS 45.0%
CCAAAGAAACATGGAAGAGG+AGG + Chr6:95880163-95880182 MsG0680034866.01.T01:CDS 45.0%
CCATACTAGTGCAGGTACTT+TGG - Chr6:95880995-95881014 None:intergenic 45.0%
CCGATAAGAACATTGAGGTG+TGG + Chr6:95879657-95879676 MsG0680034866.01.T01:CDS 45.0%
CCTCCTCTTCCATGTTTCTT+TGG - Chr6:95880166-95880185 None:intergenic 45.0%
CTAGAGTCAAAAACCATCGG+TGG - Chr6:95876296-95876315 None:intergenic 45.0%
CTGTTGAGACACTCATTGTC+TGG + Chr6:95880587-95880606 MsG0680034866.01.T01:CDS 45.0%
GAAATTTGTACTGCCGGAGA+TGG - Chr6:95881294-95881313 None:intergenic 45.0%
GAACATCAGGAGAACAAGCA+AGG - Chr6:95881272-95881291 None:intergenic 45.0%
GAAGATGTACACATACCACG+AGG - Chr6:95875314-95875333 None:intergenic 45.0%
GAGGAAATCAGTCAGGATAC+TGG + Chr6:95880514-95880533 MsG0680034866.01.T01:CDS 45.0%
GAGGGTAATTTCATCTCCAC+AGG + Chr6:95877865-95877884 MsG0680034866.01.T01:intron 45.0%
GTCAACCTTATTGGTGCAAG+CGG + Chr6:95875853-95875872 MsG0680034866.01.T01:intron 45.0%
TAAGCACTTCAACAAGGAGC+AGG + Chr6:95880669-95880688 MsG0680034866.01.T01:CDS 45.0%
TACAAAACAAGCCCGTTTGG+AGG - Chr6:95879902-95879921 None:intergenic 45.0%
TATGTTTGATCCCCGTCTTC+AGG + Chr6:95880360-95880379 MsG0680034866.01.T01:CDS 45.0%
TCAGGAAAAGACGTCTCTGT+TGG + Chr6:95880744-95880763 MsG0680034866.01.T01:CDS 45.0%
TGGAGGGATGAATTGATCTG+TGG + Chr6:95879325-95879344 MsG0680034866.01.T01:intron 45.0%
TTCTCCTGATGTTCCATCTC+CGG + Chr6:95881278-95881297 MsG0680034866.01.T01:CDS 45.0%
TTGAAGCTGCCAGAGGAAAT+GGG + Chr6:95879705-95879724 MsG0680034866.01.T01:CDS 45.0%
! ACGGTAATGGCACATTGTTC+GGG + Chr6:95880089-95880108 MsG0680034866.01.T01:CDS 45.0%
! AGATAGAGAGACGCGTTGAT+AGG - Chr6:95879992-95880011 None:intergenic 45.0%
! AGATCTTTTCTATGGGCCTG+TGG - Chr6:95877884-95877903 None:intergenic 45.0%
! AGATTTTCACCAGCTGTTGC+CGG - Chr6:95881327-95881346 None:intergenic 45.0%
! CCAAAGTACCTGCACTAGTA+TGG + Chr6:95880992-95881011 MsG0680034866.01.T01:intron 45.0%
! GAAGGCTCACAATTTTGCAG+GGG + Chr6:95880832-95880851 MsG0680034866.01.T01:CDS 45.0%
! GACGCGTTGATAGGTCTAAA+TGG - Chr6:95879983-95880002 None:intergenic 45.0%
! GACGGTAATGGCACATTGTT+CGG + Chr6:95880088-95880107 MsG0680034866.01.T01:CDS 45.0%
! GCTCGTGTTACTAAGATGCT+TGG + Chr6:95879770-95879789 MsG0680034866.01.T01:CDS 45.0%
! TGCTGCTGATTATGAGGTTC+AGG + Chr6:95880726-95880745 MsG0680034866.01.T01:CDS 45.0%
! TGTCATTGTCGCCGTCATTT+TGG - Chr6:95877129-95877148 None:intergenic 45.0%
! TGTGTGTTGCTATGATGCAC+AGG + Chr6:95878684-95878703 MsG0680034866.01.T01:intron 45.0%
! TTGACTCTAGGAGAATGCGT+TGG + Chr6:95876306-95876325 MsG0680034866.01.T01:intron 45.0%
!! ATTTTGGCCAAAGTTGGAGG+TGG - Chr6:95877113-95877132 None:intergenic 45.0%
!! CAATTTTGCAGGGGTTTTGG+TGG + Chr6:95880841-95880860 MsG0680034866.01.T01:CDS 45.0%
!! CACCGATGGTTTTTGACTCT+AGG + Chr6:95876294-95876313 MsG0680034866.01.T01:intron 45.0%
!! GAGTCTCGGTTAGCTTTACT+AGG + Chr6:95877308-95877327 MsG0680034866.01.T01:intron 45.0%
!! GTCATTTTGGCCAAAGTTGG+AGG - Chr6:95877116-95877135 None:intergenic 45.0%
!! AAATATTAAAAAAAAAGTTT+AGG - Chr6:95877359-95877378 None:intergenic 5.0%
!! AATAATTAAATATGTATATA+AGG + Chr6:95876505-95876524 MsG0680034866.01.T01:intron 5.0%
!! ATATATATATATTTGTAAAT+AGG + Chr6:95877513-95877532 MsG0680034866.01.T01:intron 5.0%
!! ATTAATTAAAAAAATAAACA+TGG - Chr6:95879495-95879514 None:intergenic 5.0%
AACACAGCAGACAGACAAGG+AGG - Chr6:95881054-95881073 None:intergenic 50.0%
AACCTTATTGGTGCAAGCGG+AGG + Chr6:95875856-95875875 MsG0680034866.01.T01:intron 50.0%
ACATTGTTCGGGACCTTGAG+TGG + Chr6:95880100-95880119 MsG0680034866.01.T01:CDS 50.0%
ACGAGCAATTTGATCACGCG+GGG - Chr6:95879756-95879775 None:intergenic 50.0%
AGTACCTGCACTAGTATGGG+AGG + Chr6:95880996-95881015 MsG0680034866.01.T01:intron 50.0%
ATCCTCCGCTTGCACCAATA+AGG - Chr6:95875861-95875880 None:intergenic 50.0%
ATCCTCTCCACCTCCAACTT+TGG + Chr6:95877103-95877122 MsG0680034866.01.T01:intron 50.0%
CAATCACTTCTGCTCAGCAG+AGG + Chr6:95879855-95879874 MsG0680034866.01.T01:CDS 50.0%
CACGAGCAATTTGATCACGC+GGG - Chr6:95879757-95879776 None:intergenic 50.0%
CATACTCGTCCCATTTCCTC+TGG - Chr6:95879717-95879736 None:intergenic 50.0%
CTTGAAGCTGCCAGAGGAAA+TGG + Chr6:95879704-95879723 MsG0680034866.01.T01:CDS 50.0%
CTTTCAGATTTGCGCCGCTA+CGG + Chr6:95878033-95878052 MsG0680034866.01.T01:intron 50.0%
GAGTCAAAAACCATCGGTGG+TGG - Chr6:95876293-95876312 None:intergenic 50.0%
GCACAGGCACTTCTCAGATT+AGG + Chr6:95878700-95878719 MsG0680034866.01.T01:intron 50.0%
GTGTATATGTGTCGGGCACA+CGG + Chr6:95878724-95878743 MsG0680034866.01.T01:CDS 50.0%
! TAGCTTTACTAGGCGCCTGA+CGG + Chr6:95877318-95877337 MsG0680034866.01.T01:intron 50.0%
!! ACTCTACAAGCTCTGGATGC+TGG + Chr6:95880562-95880581 MsG0680034866.01.T01:CDS 50.0%
!! GCCGTCATTTTGGCCAAAGT+TGG - Chr6:95877119-95877138 None:intergenic 50.0%
AAGGCTCTTGAAGCTGCCAG+AGG + Chr6:95879698-95879717 MsG0680034866.01.T01:CDS 55.0%
ACACGGACATGACACCGACA+CGG + Chr6:95878741-95878760 MsG0680034866.01.T01:CDS 55.0%
ACAGCAGACAGACAAGGAGG+AGG - Chr6:95881051-95881070 None:intergenic 55.0%
ACCAGCCAGCCTAATGTGTC+TGG + Chr6:95880286-95880305 MsG0680034866.01.T01:CDS 55.0%
ACCTGCACTAGTATGGGAGG+CGG + Chr6:95880999-95881018 MsG0680034866.01.T01:intron 55.0%
ACTGCCGGAGATGGAACATC+AGG - Chr6:95881285-95881304 None:intergenic 55.0%
AGCGGCGCAAATCTGAAAGG+AGG - Chr6:95878032-95878051 None:intergenic 55.0%
ATGCTTCCTACCACTGGTGC+AGG + Chr6:95880960-95880979 MsG0680034866.01.T01:intron 55.0%
CCTACCACTGGTGCAGGAAA+GGG + Chr6:95880966-95880985 MsG0680034866.01.T01:intron 55.0%
CGAGCAATTTGATCACGCGG+GGG - Chr6:95879755-95879774 None:intergenic 55.0%
CGCAACACAGCAGACAGACA+AGG - Chr6:95881057-95881076 None:intergenic 55.0%
CGTAGCGGCGCAAATCTGAA+AGG - Chr6:95878035-95878054 None:intergenic 55.0%
GCGAAGACGAGCAAAACGCA+GGG - Chr6:95880197-95880216 None:intergenic 55.0%
GGAGGAGATCTTAACCCTCG+TGG + Chr6:95875296-95875315 MsG0680034866.01.T01:intron 55.0%
GTGAATCGACAGTCCGTGCT+TGG + Chr6:95879830-95879849 MsG0680034866.01.T01:CDS 55.0%
TCCAGACACATTAGGCTGGC+TGG - Chr6:95880290-95880309 None:intergenic 55.0%
TCCTACCACTGGTGCAGGAA+AGG + Chr6:95880965-95880984 MsG0680034866.01.T01:intron 55.0%
TGCGAAGACGAGCAAAACGC+AGG - Chr6:95880198-95880217 None:intergenic 55.0%
TGTCTGTCTGCTGTGTTGCG+TGG + Chr6:95881057-95881076 MsG0680034866.01.T01:intron 55.0%
! ACATTAGGCTGGCTGGTAGC+AGG - Chr6:95880283-95880302 None:intergenic 55.0%
! CCTCTTGATGACCTCTTCGG+CGG - Chr6:95874818-95874837 None:intergenic 55.0%
! GCGTTTTGCTCGTCTTCGCA+TGG + Chr6:95880198-95880217 MsG0680034866.01.T01:CDS 55.0%
!! AGGGGTTTTGGTGGGATAGG+TGG + Chr6:95880850-95880869 MsG0680034866.01.T01:CDS 55.0%
!! GGGGTTTTGGTGGGATAGGT+GGG + Chr6:95880851-95880870 MsG0680034866.01.T01:CDS 55.0%
!! TGCAGGGGTTTTGGTGGGAT+AGG + Chr6:95880847-95880866 MsG0680034866.01.T01:CDS 55.0%
ACCACTGGTGCAGGAAAGGG+AGG + Chr6:95880969-95880988 MsG0680034866.01.T01:intron 60.0%
ACCGCCTCCCATACTAGTGC+AGG - Chr6:95881003-95881022 None:intergenic 60.0%
AGACAAGGAGGAGGAGGAGG+AGG - Chr6:95881042-95881061 None:intergenic 60.0%
AGGGCACGTCTCTCTCTTCG+CGG + Chr6:95878006-95878025 MsG0680034866.01.T01:intron 60.0%
CCCTTTCCTGCACCAGTGGT+AGG - Chr6:95880969-95880988 None:intergenic 60.0%
CCGCCGAAGAGGTCATCAAG+AGG + Chr6:95874815-95874834 MsG0680034866.01.T01:CDS 60.0%
GACAGACAAGGAGGAGGAGG+AGG - Chr6:95881045-95881064 None:intergenic 60.0%
GCAACATTGCCGGCAACAGC+TGG + Chr6:95881315-95881334 MsG0680034866.01.T01:CDS 60.0%
GCAGACAGACAAGGAGGAGG+AGG - Chr6:95881048-95881067 None:intergenic 60.0%
GGCCAAAGTTGGAGGTGGAG+AGG - Chr6:95877108-95877127 None:intergenic 60.0%
GCCTCCCTTTCCTGCACCAG+TGG - Chr6:95880973-95880992 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 95874812 95881440 95874812 ID=MsG0680034866.01;Name=MsG0680034866.01
Chr6 mRNA 95874812 95881440 95874812 ID=MsG0680034866.01.T01;Parent=MsG0680034866.01;Name=MsG0680034866.01.T01;_AED=0.34;_eAED=0.42;_QI=0|0|0|1|1|1|4|0|617
Chr6 exon 95874812 95874985 95874812 ID=MsG0680034866.01.T01:exon:6572;Parent=MsG0680034866.01.T01
Chr6 exon 95878706 95878851 95878706 ID=MsG0680034866.01.T01:exon:6573;Parent=MsG0680034866.01.T01
Chr6 exon 95879613 95880932 95879613 ID=MsG0680034866.01.T01:exon:6574;Parent=MsG0680034866.01.T01
Chr6 exon 95881227 95881440 95881227 ID=MsG0680034866.01.T01:exon:6575;Parent=MsG0680034866.01.T01
Chr6 CDS 95874812 95874985 95874812 ID=MsG0680034866.01.T01:cds;Parent=MsG0680034866.01.T01
Chr6 CDS 95878706 95878851 95878706 ID=MsG0680034866.01.T01:cds;Parent=MsG0680034866.01.T01
Chr6 CDS 95879613 95880932 95879613 ID=MsG0680034866.01.T01:cds;Parent=MsG0680034866.01.T01
Chr6 CDS 95881227 95881440 95881227 ID=MsG0680034866.01.T01:cds;Parent=MsG0680034866.01.T01
Gene Sequence

>MsG0680034866.01.T01

ATGCCGCCGAAGAGGTCATCAAGAGGAAAACAAAAAGTGGAGCTAAAAAAAATTGAGAGTAAGAATGATCTCTTTGTTGCATTTACAACGAGAAAGTCTGGAATTTACAACAAGGCCTCTGAGTTAACAACACTTTCAGGGGCCTCAGTTGATATTCTCATGCTTTCTCCAACGGCACTTCTCAGATTAGGTGTGTATATGTGTCGGGCACACGGACATGACACCGACACGGAATTATGTGCTTTTTTCAAAATATTAGTGGTGTTGGCATGTCAGTGTCCGTGTATCATAGGTGTGGTACGAATTGTTTATGACATGGGGTTACTAGTCTCTTATTGTTCAGAGATGGCTGACGCTCATGATACCGATAAGAACATTGAGGTGTGGAAAATCAAGAAATTGATCAAGGCTCTTGAAGCTGCCAGAGGAAATGGGACGAGTATGATTTCTCTTATCATGCCCCCGCGTGATCAAATTGCTCGTGTTACTAAGATGCTTGGGGATGAGTTTGGAACTGCTTCAAACATCAAGAGTAGGGTGAATCGACAGTCCGTGCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTTAAGCTTTATAACAAGGTCCCTCCAAACGGGCTTGTTTTGTATACTGGTACAATTGTGACTGATGATGGGAAGGAGAAAAAGGTGACCATTGATTTTGAACCATTTAGACCTATCAACGCGTCTCTCTATCTTTGTGACAACAAGTTTCACACTGAAGCTCTCAATGAGCTATTGGAATCTGATGACAAGTTTGGATTTATTGTCATGGACGGTAATGGCACATTGTTCGGGACCTTGAGTGGTAATACAAGAGAGGTGCTTCACAAGTTCAGTGTCGATCTTCCAAAGAAACATGGAAGAGGAGGGCAGTCTGCCCTGCGTTTTGCTCGTCTTCGCATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCTGAGCTAGCAACCCAGTTTTATATCAATCCTGCTACCAGCCAGCCTAATGTGTCTGGATTAATACTTGCTGGTTCTGCTGATTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCCCGTCTTCAGGCAAAAATACTTAATGTTGTAGATGTATCTTATGGAGGTGAGAATGGGTTTAATCAGGCTATTGAACTATCTTCTGAAATTCTGTCCAATGTCAAGTTCATTCAGGAGAAACGCTTGATTGGAAAATACTTTGAGGAAATCAGTCAGGATACTGGGAAGTATGTCTTTGGTGTTGATGATACTCTACAAGCTCTGGATGCTGGAGCTGTTGAGACACTCATTGTCTGGGAAAATCTGGATATGAATAGATATGTTTTAAAAAATAGTACTACCGGTGAAGTTGTCATTAAGCACTTCAACAAGGAGCAGGAAGCCAAGCAGAGCAATTTTAGAGATCCTGAAACTGCTGCTGATTATGAGGTTCAGGAAAAGACGTCTCTGTTGGACTGGTTTGCAAATGAATACAGACGGTTTGGTTGCACTCTCGAGTTTGTCACCAATAAATCACAAGAAGGCTCACAATTTTGCAGGGGTTTTGGTGGGATAGGTGGGATCTTGCGCTACCAGCTTGATATGAGAACATTTGATGATTTTTCTGATGATGGAGGCGTCTGCTCTACCCCAAAAGTTATGACTGATGTGAATTTCAACTCCCTTGCTTGTTCTCCTGATGTTCCATCTCCGGCAGTACAAATTTCAGCAACATTGCCGGCAACAGCTGGTGAAAATCTATCATTTCCTGGTAAGTTTCAATCTACTATTGGGTGTAACTTTCAAGCTATTATTGGTGTGTTATTCCTTATTCATTTCCCAGCATGTCTCTAA
Protein sequence

>MsG0680034866.01.T01

MPPKRSSRGKQKVELKKIESKNDLFVAFTTRKSGIYNKASELTTLSGASVDILMLSPTALLRLGVYMCRAHGHDTDTELCAFFKILVVLACQCPCIIGVVRIVYDMGLLVSYCSEMADAHDTDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLQALDAGAVETLIVWENLDMNRYVLKNSTTGEVVIKHFNKEQEAKQSNFRDPETAADYEVQEKTSLLDWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRTFDDFSDDGGVCSTPKVMTDVNFNSLACSPDVPSPAVQISATLPATAGENLSFPGKFQSTIGCNFQAIIGVLFLIHFPACL*