Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035562.01.T01 | ABE80136.2 | 63.584 | 173 | 27 | 3 | 2 | 144 | 8 | 174 | 1.02E-57 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035562.01.T01 | Q1SN17 | 63.584 | 173 | 27 | 3 | 2 | 144 | 8 | 174 | 4.86e-58 | 197 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0680035562.01.T01 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035562.01.T01 | MTR_3g072200 | 61.364 | 176 | 34 | 3 | 2 | 144 | 8 | 182 | 3.90e-60 | 195 |
| MsG0680035562.01.T01 | MTR_4g049670 | 71.756 | 131 | 24 | 2 | 1 | 118 | 1 | 131 | 8.33e-60 | 182 |
| MsG0680035562.01.T01 | MTR_1g058140 | 62.821 | 156 | 35 | 2 | 1 | 144 | 22 | 166 | 9.73e-59 | 183 |
| MsG0680035562.01.T01 | MTR_3g462670 | 61.842 | 152 | 50 | 1 | 1 | 144 | 1 | 152 | 1.27e-57 | 179 |
| MsG0680035562.01.T01 | MTR_2g067930 | 66.061 | 165 | 35 | 2 | 1 | 144 | 1 | 165 | 2.91e-57 | 177 |
| MsG0680035562.01.T01 | MTR_1g081740 | 63.190 | 163 | 40 | 4 | 2 | 144 | 7 | 169 | 4.37e-56 | 174 |
| MsG0680035562.01.T01 | MTR_2g026585 | 60.976 | 164 | 42 | 2 | 2 | 144 | 8 | 170 | 2.42e-53 | 173 |
| MsG0680035562.01.T01 | MTR_3g030230 | 66.667 | 123 | 38 | 1 | 22 | 144 | 44 | 163 | 3.07e-52 | 164 |
| MsG0680035562.01.T01 | MTR_3g015530 | 82.105 | 95 | 17 | 0 | 50 | 144 | 92 | 186 | 1.53e-51 | 165 |
| MsG0680035562.01.T01 | MTR_7g050385 | 56.790 | 162 | 20 | 1 | 11 | 122 | 68 | 229 | 1.30e-50 | 162 |
| MsG0680035562.01.T01 | MTR_1g059880 | 67.176 | 131 | 21 | 2 | 2 | 110 | 44 | 174 | 3.93e-50 | 160 |
| MsG0680035562.01.T01 | MTR_4g051638 | 55.233 | 172 | 15 | 2 | 2 | 123 | 80 | 239 | 6.08e-50 | 160 |
| MsG0680035562.01.T01 | MTR_4g057300 | 76.344 | 93 | 22 | 0 | 52 | 144 | 1 | 93 | 6.09e-49 | 161 |
| MsG0680035562.01.T01 | MTR_4g113170 | 64.336 | 143 | 34 | 1 | 2 | 144 | 8 | 133 | 8.25e-46 | 159 |
| MsG0680035562.01.T01 | MTR_6g089230 | 63.964 | 111 | 37 | 1 | 44 | 154 | 15 | 122 | 1.33e-43 | 144 |
| MsG0680035562.01.T01 | MTR_6g026910 | 74.257 | 101 | 15 | 2 | 2 | 97 | 8 | 102 | 4.56e-43 | 143 |
| MsG0680035562.01.T01 | MTR_8g038805 | 52.985 | 134 | 59 | 2 | 1 | 132 | 1 | 132 | 5.60e-42 | 137 |
| MsG0680035562.01.T01 | MTR_7g106560 | 57.143 | 147 | 43 | 4 | 11 | 144 | 13 | 152 | 1.28e-40 | 135 |
| MsG0680035562.01.T01 | MTR_6g075990 | 42.347 | 196 | 61 | 2 | 1 | 144 | 19 | 214 | 1.45e-39 | 134 |
| MsG0680035562.01.T01 | MTR_8g009330 | 38.498 | 213 | 77 | 3 | 1 | 163 | 24 | 232 | 1.39e-38 | 131 |
| MsG0680035562.01.T01 | MTR_5g031650 | 59.596 | 99 | 40 | 0 | 46 | 144 | 120 | 218 | 2.03e-37 | 128 |
| MsG0680035562.01.T01 | MTR_4g119600 | 41.327 | 196 | 63 | 3 | 1 | 144 | 1 | 196 | 4.44e-37 | 130 |
| MsG0680035562.01.T01 | MTR_8g107490 | 55.357 | 112 | 47 | 1 | 33 | 144 | 67 | 175 | 8.84e-37 | 128 |
| MsG0680035562.01.T01 | MTR_8g445570 | 73.611 | 72 | 19 | 0 | 73 | 144 | 4 | 75 | 1.49e-34 | 117 |
| MsG0680035562.01.T01 | MTR_3g067290 | 43.860 | 171 | 69 | 1 | 1 | 144 | 28 | 198 | 9.85e-33 | 116 |
| MsG0680035562.01.T01 | MTR_4g057975 | 39.474 | 190 | 69 | 5 | 1 | 144 | 1 | 190 | 4.30e-32 | 114 |
| MsG0680035562.01.T01 | MTR_7g050365 | 66.667 | 87 | 5 | 1 | 58 | 144 | 20 | 82 | 9.71e-31 | 110 |
| MsG0680035562.01.T01 | MTR_3g437000 | 50.000 | 126 | 19 | 2 | 15 | 96 | 5 | 130 | 3.13e-30 | 107 |
| MsG0680035562.01.T01 | MTR_5g060510 | 60.331 | 121 | 22 | 1 | 22 | 116 | 38 | 158 | 2.66e-29 | 106 |
| MsG0680035562.01.T01 | MTR_8g103800 | 39.157 | 166 | 79 | 3 | 1 | 144 | 1 | 166 | 2.69e-29 | 108 |
| MsG0680035562.01.T01 | MTR_6g090600 | 63.158 | 76 | 28 | 0 | 52 | 127 | 27 | 102 | 1.43e-28 | 102 |
| MsG0680035562.01.T01 | MTR_3g077875 | 47.525 | 101 | 51 | 1 | 46 | 144 | 116 | 216 | 2.26e-28 | 106 |
| MsG0680035562.01.T01 | MTR_7g060350 | 41.143 | 175 | 71 | 5 | 1 | 144 | 1 | 174 | 2.95e-27 | 100 |
| MsG0680035562.01.T01 | MTR_3g087440 | 45.833 | 120 | 62 | 2 | 46 | 162 | 116 | 235 | 3.01e-27 | 102 |
| MsG0680035562.01.T01 | MTR_5g060540 | 43.949 | 157 | 43 | 2 | 25 | 146 | 10 | 156 | 3.73e-27 | 105 |
| MsG0680035562.01.T01 | MTR_8g020433 | 39.474 | 152 | 79 | 2 | 1 | 144 | 1 | 147 | 3.41e-26 | 103 |
| MsG0680035562.01.T01 | MTR_6g464570 | 51.111 | 90 | 42 | 2 | 53 | 142 | 65 | 152 | 1.30e-24 | 93.6 |
| MsG0680035562.01.T01 | MTR_1g080040 | 46.602 | 103 | 53 | 1 | 53 | 153 | 1 | 103 | 3.11e-23 | 89.7 |
| MsG0680035562.01.T01 | MTR_5g006100 | 45.000 | 100 | 53 | 1 | 47 | 144 | 93 | 192 | 1.23e-22 | 94.0 |
| MsG0680035562.01.T01 | MTR_6g084740 | 44.755 | 143 | 53 | 5 | 2 | 144 | 8 | 124 | 2.91e-21 | 85.1 |
| MsG0680035562.01.T01 | MTR_1g098990 | 37.349 | 166 | 81 | 4 | 1 | 144 | 1 | 165 | 3.91e-21 | 87.4 |
| MsG0680035562.01.T01 | MTR_7g010970 | 46.667 | 90 | 45 | 2 | 57 | 144 | 6 | 94 | 8.89e-21 | 85.5 |
| MsG0680035562.01.T01 | MTR_0156s0040 | 47.368 | 95 | 48 | 1 | 52 | 144 | 1 | 95 | 1.27e-20 | 84.0 |
| MsG0680035562.01.T01 | MTR_2g451070 | 45.902 | 122 | 10 | 2 | 1 | 72 | 7 | 122 | 2.23e-20 | 81.6 |
| MsG0680035562.01.T01 | MTR_3g034840 | 42.708 | 96 | 53 | 1 | 51 | 144 | 111 | 206 | 6.97e-20 | 82.8 |
| MsG0680035562.01.T01 | MTR_0599s0020 | 42.708 | 96 | 53 | 1 | 51 | 144 | 111 | 206 | 6.97e-20 | 82.8 |
| MsG0680035562.01.T01 | MTR_5g046245 | 62.903 | 62 | 23 | 0 | 83 | 144 | 5 | 66 | 3.23e-19 | 81.3 |
| MsG0680035562.01.T01 | MTR_5g046245 | 49.351 | 77 | 39 | 0 | 86 | 162 | 152 | 228 | 1.37e-18 | 79.7 |
| MsG0680035562.01.T01 | MTR_6g029530 | 42.268 | 97 | 55 | 1 | 55 | 151 | 553 | 648 | 5.32e-19 | 83.2 |
| MsG0680035562.01.T01 | MTR_7g034570 | 32.000 | 150 | 87 | 3 | 2 | 144 | 18 | 159 | 7.81e-19 | 79.3 |
| MsG0680035562.01.T01 | MTR_5g070810 | 41.053 | 95 | 51 | 2 | 37 | 129 | 21 | 112 | 8.24e-19 | 77.4 |
| MsG0680035562.01.T01 | MTR_1g012760 | 41.176 | 102 | 56 | 2 | 43 | 144 | 71 | 168 | 1.10e-18 | 80.9 |
| MsG0680035562.01.T01 | MTR_1g012760 | 41.176 | 102 | 56 | 2 | 43 | 144 | 82 | 179 | 1.61e-18 | 80.5 |
| MsG0680035562.01.T01 | MTR_5g046160 | 36.607 | 112 | 53 | 2 | 33 | 144 | 68 | 161 | 1.82e-18 | 79.7 |
| MsG0680035562.01.T01 | MTR_1g088955 | 40.458 | 131 | 52 | 6 | 1 | 130 | 1 | 106 | 3.17e-17 | 74.3 |
| MsG0680035562.01.T01 | MTR_2g096070 | 41.071 | 112 | 33 | 2 | 33 | 144 | 106 | 184 | 4.07e-17 | 77.8 |
| MsG0680035562.01.T01 | MTR_7g065910 | 41.489 | 94 | 44 | 2 | 53 | 144 | 34 | 118 | 3.99e-16 | 74.7 |
| MsG0680035562.01.T01 | MTR_3g467720 | 36.111 | 144 | 58 | 3 | 1 | 144 | 7 | 116 | 4.78e-16 | 70.9 |
| MsG0680035562.01.T01 | MTR_0116s0050 | 51.613 | 62 | 30 | 0 | 83 | 144 | 82 | 143 | 1.44e-15 | 70.5 |
| MsG0680035562.01.T01 | MTR_1g052890 | 59.322 | 59 | 24 | 0 | 86 | 144 | 2 | 60 | 1.87e-15 | 72.4 |
| MsG0680035562.01.T01 | MTR_1g043340 | 52.459 | 61 | 29 | 0 | 99 | 159 | 3 | 63 | 9.96e-15 | 66.6 |
| MsG0680035562.01.T01 | MTR_7g024830 | 85.714 | 35 | 5 | 0 | 110 | 144 | 1 | 35 | 1.73e-14 | 65.1 |
| MsG0680035562.01.T01 | MTR_3g116710 | 32.632 | 95 | 63 | 1 | 50 | 144 | 124 | 217 | 1.56e-13 | 66.2 |
| MsG0680035562.01.T01 | MTR_2g034775 | 64.179 | 67 | 11 | 3 | 2 | 67 | 37 | 91 | 2.08e-13 | 65.9 |
| MsG0680035562.01.T01 | MTR_5g079560 | 42.529 | 87 | 45 | 2 | 46 | 127 | 112 | 198 | 2.13e-13 | 65.9 |
| MsG0680035562.01.T01 | MTR_5g071980 | 72.917 | 48 | 7 | 1 | 2 | 49 | 8 | 49 | 1.09e-12 | 64.3 |
| MsG0680035562.01.T01 | MTR_4g066090 | 50.000 | 66 | 33 | 0 | 88 | 153 | 70 | 135 | 1.28e-12 | 62.4 |
| MsG0680035562.01.T01 | MTR_7g064870 | 26.115 | 157 | 80 | 3 | 1 | 121 | 1 | 157 | 3.41e-12 | 61.6 |
| MsG0680035562.01.T01 | MTR_5g055912 | 56.522 | 46 | 20 | 0 | 89 | 134 | 16 | 61 | 3.51e-12 | 58.5 |
| MsG0680035562.01.T01 | MTR_8g446840 | 44.156 | 77 | 38 | 2 | 68 | 144 | 1 | 72 | 4.19e-12 | 59.3 |
| MsG0680035562.01.T01 | MTR_5g046145 | 30.303 | 99 | 68 | 1 | 56 | 154 | 162 | 259 | 2.54e-11 | 60.8 |
| MsG0680035562.01.T01 | MTR_6g081290 | 36.458 | 96 | 49 | 2 | 53 | 143 | 3 | 91 | 3.49e-11 | 57.0 |
| MsG0680035562.01.T01 | MTR_2g461140 | 40.217 | 92 | 26 | 3 | 53 | 144 | 91 | 153 | 3.68e-11 | 58.9 |
| MsG0680035562.01.T01 | MTR_2g090505 | 31.579 | 95 | 64 | 1 | 50 | 144 | 129 | 222 | 6.94e-11 | 59.7 |
| MsG0680035562.01.T01 | MTR_0528s0010 | 34.524 | 84 | 54 | 1 | 61 | 144 | 1 | 83 | 7.05e-11 | 57.4 |
| MsG0680035562.01.T01 | MTR_4g120790 | 40.984 | 61 | 36 | 0 | 84 | 144 | 110 | 170 | 9.36e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAATTGGCTATTCTTAA+TGG | 0.154142 | 6:-108478009 | MsG0680035562.01.T01:CDS |
| CCTTCTTGCCGGAAGATTAA+TGG | 0.223899 | 6:-108477947 | MsG0680035562.01.T01:CDS |
| CACGGAAGCTTCGACCTTAA+TGG | 0.246908 | 6:+108478372 | None:intergenic |
| GGAAGACAGTTCTTGGAAAT+TGG | 0.278443 | 6:-108478022 | MsG0680035562.01.T01:CDS |
| GTCGTCCTCCATTAATCTTC+CGG | 0.328172 | 6:+108477939 | None:intergenic |
| ACGGAAGCTTCGACCTTAAT+GGG | 0.340420 | 6:+108478373 | None:intergenic |
| ACATGACTTGACCAATTCTT+TGG | 0.344961 | 6:-108477905 | MsG0680035562.01.T01:CDS |
| GCTTGAAGCCTCAACTTTAA+CGG | 0.401956 | 6:+108478336 | None:intergenic |
| TAAGGTTGAAGCTCCCATTA+AGG | 0.417279 | 6:-108478386 | MsG0680035562.01.T01:CDS |
| TCGTCAGGGAAGACAGTTCT+TGG | 0.424715 | 6:-108478029 | MsG0680035562.01.T01:CDS |
| TGAGAATGCGGGTGATGATC+CGG | 0.429344 | 6:-108478440 | MsG0680035562.01.T01:CDS |
| AAGTGTTGTCGATTCAGTTA+AGG | 0.435551 | 6:-108478404 | MsG0680035562.01.T01:CDS |
| AGGTGCGTGGATATGTCGTC+AGG | 0.438521 | 6:-108478044 | MsG0680035562.01.T01:CDS |
| AACGGAAGCTTCAACCTTCA+CGG | 0.456661 | 6:+108478354 | None:intergenic |
| GTAGCAGGGAACCTTCTTGC+CGG | 0.456891 | 6:-108477958 | MsG0680035562.01.T01:CDS |
| TTAACTGAATCGACAACACT+TGG | 0.482688 | 6:+108478406 | None:intergenic |
| AGAAGGTTCCCTGCTACATA+TGG | 0.486745 | 6:+108477964 | None:intergenic |
| GAGATGGTGCCATATGTAGC+AGG | 0.499746 | 6:-108477973 | MsG0680035562.01.T01:CDS |
| ATAGATATGGTTGAGAATGC+GGG | 0.504029 | 6:-108478451 | None:intergenic |
| GACTTGCTTGATATTTGTCA+TGG | 0.506902 | 6:+108477836 | None:intergenic |
| TATAGATATGGTTGAGAATG+CGG | 0.513416 | 6:-108478452 | None:intergenic |
| CCATTAATCTTCCGGCAAGA+AGG | 0.516371 | 6:+108477947 | None:intergenic |
| CTACATATGGCACCATCTCA+TGG | 0.520860 | 6:+108477977 | None:intergenic |
| AAAATGTGGGTGTTTGTTCA+AGG | 0.526388 | 6:-108478064 | MsG0680035562.01.T01:CDS |
| AAAGTGAAGCATGAAGCAAC+GGG | 0.536859 | 6:-108478093 | MsG0680035562.01.T01:CDS |
| GAGAATGCGGGTGATGATCC+GGG | 0.555681 | 6:-108478439 | MsG0680035562.01.T01:CDS |
| TAGAAATGCTGTGTTGGAGT+TGG | 0.560288 | 6:-108478154 | MsG0680035562.01.T01:CDS |
| TGAAGCTTCCGTTAAAGTTG+AGG | 0.561546 | 6:-108478344 | MsG0680035562.01.T01:CDS |
| GCAACGGGATCAAGAAAATG+TGG | 0.566912 | 6:-108478078 | MsG0680035562.01.T01:CDS |
| TGTTGGAGTTGGTTTGTGAA+CGG | 0.576271 | 6:-108478143 | MsG0680035562.01.T01:CDS |
| ACACTTGGGTTTCGATCACC+CGG | 0.577593 | 6:+108478421 | None:intergenic |
| AAAAGTGAAGCATGAAGCAA+CGG | 0.578845 | 6:-108478094 | MsG0680035562.01.T01:CDS |
| TAACTGAATCGACAACACTT+GGG | 0.597416 | 6:+108478407 | None:intergenic |
| TGAAGGTAGAAATGCTGTGT+TGG | 0.597946 | 6:-108478160 | MsG0680035562.01.T01:intron |
| GGGTGTTTGTTCAAGGTGCG+TGG | 0.617723 | 6:-108478057 | MsG0680035562.01.T01:CDS |
| TGGCGTTCACAACCATGAGA+TGG | 0.631982 | 6:-108477989 | MsG0680035562.01.T01:CDS |
| TAAGGTCGAAGCTTCCGTGA+AGG | 0.633123 | 6:-108478368 | MsG0680035562.01.T01:CDS |
| CAACGGGATCAAGAAAATGT+GGG | 0.655168 | 6:-108478077 | MsG0680035562.01.T01:CDS |
| AGATGGTGCCATATGTAGCA+GGG | 0.658748 | 6:-108477972 | MsG0680035562.01.T01:CDS |
| GGTGCGTGGATATGTCGTCA+GGG | 0.664523 | 6:-108478043 | MsG0680035562.01.T01:CDS |
| TCTTGCCGGAAGATTAATGG+AGG | 0.684933 | 6:-108477944 | MsG0680035562.01.T01:CDS |
| GAGTTGGTTTGTGAACGGAG+TGG | 0.704384 | 6:-108478138 | MsG0680035562.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAATTTTTCAATATTTTT+TGG | + | Chr6:108478399-108478418 | None:intergenic | 10.0% |
| !! | TGAAAAATTTGAAGAAGAAA+AGG | - | Chr6:108478407-108478426 | MsG0680035562.01.T01:CDS | 20.0% |
| ! | AAAGATAAAAACGAATTGCT+CGG | - | Chr6:108478033-108478052 | MsG0680035562.01.T01:CDS | 25.0% |
| !!! | TTTTTTTTACCTGAGATACA+TGG | - | Chr6:108478010-108478029 | MsG0680035562.01.T01:CDS | 25.0% |
| ATCATTAGAAGATCTTGTGA+AGG | - | Chr6:108478096-108478115 | MsG0680035562.01.T01:CDS | 30.0% | |
| TGGAAATTGGCTATTCTTAA+TGG | - | Chr6:108478264-108478283 | MsG0680035562.01.T01:intron | 30.0% | |
| TTTATCTTTCCATGTATCTC+AGG | + | Chr6:108478022-108478041 | None:intergenic | 30.0% | |
| !!! | TTTTGGTTTCACCAAAGAAT+TGG | + | Chr6:108478382-108478401 | None:intergenic | 30.0% |
| AAAAGTGAAGCATGAAGCAA+CGG | - | Chr6:108478179-108478198 | MsG0680035562.01.T01:intron | 35.0% | |
| AAAATGTGGGTGTTTGTTCA+AGG | - | Chr6:108478209-108478228 | MsG0680035562.01.T01:intron | 35.0% | |
| ACATGACTTGACCAATTCTT+TGG | - | Chr6:108478368-108478387 | MsG0680035562.01.T01:CDS | 35.0% | |
| AGCAAATAGGGCTGAATTTA+CGG | - | Chr6:108478071-108478090 | MsG0680035562.01.T01:CDS | 35.0% | |
| ATAAAAACGAATTGCTCGGT+TGG | - | Chr6:108478037-108478056 | MsG0680035562.01.T01:CDS | 35.0% | |
| GAAACTTCTTGACAATGAAG+TGG | - | Chr6:108477977-108477996 | MsG0680035562.01.T01:CDS | 35.0% | |
| TAAAAACGAATTGCTCGGTT+GGG | - | Chr6:108478038-108478057 | MsG0680035562.01.T01:CDS | 35.0% | |
| TAACTGAATCGACAACACTT+GGG | + | Chr6:108477869-108477888 | None:intergenic | 35.0% | |
| TTAACTGAATCGACAACACT+TGG | + | Chr6:108477870-108477889 | None:intergenic | 35.0% | |
| ! | GACTTGCTTGATATTTGTCA+TGG | + | Chr6:108478440-108478459 | None:intergenic | 35.0% |
| !! | AAGTGTTGTCGATTCAGTTA+AGG | - | Chr6:108477869-108477888 | MsG0680035562.01.T01:CDS | 35.0% |
| !! | TCATGCTTCACTTTTGTCTT+CGG | + | Chr6:108478174-108478193 | None:intergenic | 35.0% |
| AAAGTGAAGCATGAAGCAAC+GGG | - | Chr6:108478180-108478199 | MsG0680035562.01.T01:intron | 40.0% | |
| CAACGGGATCAAGAAAATGT+GGG | - | Chr6:108478196-108478215 | MsG0680035562.01.T01:intron | 40.0% | |
| GCTTGAAGCCTCAACTTTAA+CGG | + | Chr6:108477940-108477959 | None:intergenic | 40.0% | |
| GGAAGACAGTTCTTGGAAAT+TGG | - | Chr6:108478251-108478270 | MsG0680035562.01.T01:intron | 40.0% | |
| GTCAAGAAGTTTCCACACAT+CGG | + | Chr6:108477970-108477989 | None:intergenic | 40.0% | |
| TAAGGTTGAAGCTCCCATTA+AGG | - | Chr6:108477887-108477906 | MsG0680035562.01.T01:CDS | 40.0% | |
| TAGAAATGCTGTGTTGGAGT+TGG | - | Chr6:108478119-108478138 | MsG0680035562.01.T01:CDS | 40.0% | |
| TGAAGCTTCCGTTAAAGTTG+AGG | - | Chr6:108477929-108477948 | MsG0680035562.01.T01:CDS | 40.0% | |
| TGAAGGTAGAAATGCTGTGT+TGG | - | Chr6:108478113-108478132 | MsG0680035562.01.T01:CDS | 40.0% | |
| !! | TGTTGGAGTTGGTTTGTGAA+CGG | - | Chr6:108478130-108478149 | MsG0680035562.01.T01:CDS | 40.0% |
| AACGGAAGCTTCAACCTTCA+CGG | + | Chr6:108477922-108477941 | None:intergenic | 45.0% | |
| ACGGAAGCTTCGACCTTAAT+GGG | + | Chr6:108477903-108477922 | None:intergenic | 45.0% | |
| AGAAGGTTCCCTGCTACATA+TGG | + | Chr6:108478312-108478331 | None:intergenic | 45.0% | |
| CCATTAATCTTCCGGCAAGA+AGG | + | Chr6:108478329-108478348 | None:intergenic | 45.0% | |
| CCTTCTTGCCGGAAGATTAA+TGG | - | Chr6:108478326-108478345 | MsG0680035562.01.T01:CDS | 45.0% | |
| CTACATATGGCACCATCTCA+TGG | + | Chr6:108478299-108478318 | None:intergenic | 45.0% | |
| GCAACGGGATCAAGAAAATG+TGG | - | Chr6:108478195-108478214 | MsG0680035562.01.T01:intron | 45.0% | |
| GGTTCGTCGACAAGCAAATA+GGG | - | Chr6:108478059-108478078 | MsG0680035562.01.T01:CDS | 45.0% | |
| GTCGTCCTCCATTAATCTTC+CGG | + | Chr6:108478337-108478356 | None:intergenic | 45.0% | |
| TCTTGCCGGAAGATTAATGG+AGG | - | Chr6:108478329-108478348 | MsG0680035562.01.T01:CDS | 45.0% | |
| !! | AGATGGTGCCATATGTAGCA+GGG | - | Chr6:108478301-108478320 | MsG0680035562.01.T01:intron | 45.0% |
| ACACTTGGGTTTCGATCACC+CGG | + | Chr6:108477855-108477874 | None:intergenic | 50.0% | |
| CAAGCGTCAATTCCGATGTG+TGG | - | Chr6:108477955-108477974 | MsG0680035562.01.T01:CDS | 50.0% | |
| CACGGAAGCTTCGACCTTAA+TGG | + | Chr6:108477904-108477923 | None:intergenic | 50.0% | |
| GGGTTCGTCGACAAGCAAAT+AGG | - | Chr6:108478058-108478077 | MsG0680035562.01.T01:CDS | 50.0% | |
| TAAGGTCGAAGCTTCCGTGA+AGG | - | Chr6:108477905-108477924 | MsG0680035562.01.T01:CDS | 50.0% | |
| TCGTCAGGGAAGACAGTTCT+TGG | - | Chr6:108478244-108478263 | MsG0680035562.01.T01:intron | 50.0% | |
| TGAGAATGCGGGTGATGATC+CGG | - | Chr6:108477833-108477852 | MsG0680035562.01.T01:CDS | 50.0% | |
| TGGCGTTCACAACCATGAGA+TGG | - | Chr6:108478284-108478303 | MsG0680035562.01.T01:intron | 50.0% | |
| !! | GAGATGGTGCCATATGTAGC+AGG | - | Chr6:108478300-108478319 | MsG0680035562.01.T01:intron | 50.0% |
| !! | GAGTTGGTTTGTGAACGGAG+TGG | - | Chr6:108478135-108478154 | MsG0680035562.01.T01:CDS | 50.0% |
| AGGTGCGTGGATATGTCGTC+AGG | - | Chr6:108478229-108478248 | MsG0680035562.01.T01:intron | 55.0% | |
| GAGAATGCGGGTGATGATCC+GGG | - | Chr6:108477834-108477853 | MsG0680035562.01.T01:CDS | 55.0% | |
| GGGTGTTTGTTCAAGGTGCG+TGG | - | Chr6:108478216-108478235 | MsG0680035562.01.T01:intron | 55.0% | |
| GGTGCGTGGATATGTCGTCA+GGG | - | Chr6:108478230-108478249 | MsG0680035562.01.T01:intron | 55.0% | |
| GTAGCAGGGAACCTTCTTGC+CGG | - | Chr6:108478315-108478334 | MsG0680035562.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 108477828 | 108478467 | 108477828 | ID=MsG0680035562.01;Name=MsG0680035562.01 |
| Chr6 | mRNA | 108477828 | 108478467 | 108477828 | ID=MsG0680035562.01.T01;Parent=MsG0680035562.01;Name=MsG0680035562.01.T01;_AED=0.58;_eAED=0.58;_QI=0|0|0|0.5|1|1|2|0|163 |
| Chr6 | exon | 108478322 | 108478467 | 108478322 | ID=MsG0680035562.01.T01:exon:17403;Parent=MsG0680035562.01.T01 |
| Chr6 | exon | 108477828 | 108478173 | 108477828 | ID=MsG0680035562.01.T01:exon:17402;Parent=MsG0680035562.01.T01 |
| Chr6 | CDS | 108478322 | 108478467 | 108478322 | ID=MsG0680035562.01.T01:cds;Parent=MsG0680035562.01.T01 |
| Chr6 | CDS | 108477828 | 108478173 | 108477828 | ID=MsG0680035562.01.T01:cds;Parent=MsG0680035562.01.T01 |
| Gene Sequence |
| Protein sequence |
