AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036244.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036244.01.T01 MTR_7g010300 94.785 326 11 4 15 338 20 341 0.0 514
MsG0780036244.01.T01 MTR_6g012280 63.218 261 79 6 33 284 36 288 2.68e-79 245
MsG0780036244.01.T01 MTR_1g077020 44.828 203 86 6 82 280 6 186 2.06e-52 171
MsG0780036244.01.T01 MTR_3g100650 43.541 209 96 5 82 280 77 273 1.05e-48 165
MsG0780036244.01.T01 MTR_5g020510 43.062 209 100 7 83 281 97 296 4.78e-48 164
MsG0780036244.01.T01 MTR_5g032600 44.811 212 83 7 85 280 78 271 1.39e-46 159
MsG0780036244.01.T01 MTR_4g134580 40.928 237 98 9 85 281 113 347 8.85e-45 157
MsG0780036244.01.T01 MTR_5g065440 39.738 229 102 6 77 280 50 267 4.12e-44 152
MsG0780036244.01.T01 MTR_2g076780 38.785 214 99 6 85 280 37 236 4.40e-40 141
MsG0780036244.01.T01 MTR_6g073013 38.860 193 66 5 85 276 19 160 2.27e-37 132
MsG0780036244.01.T01 MTR_8g069080 36.792 212 97 6 85 276 69 263 7.89e-36 131
MsG0780036244.01.T01 MTR_8g467340 52.830 106 41 1 46 142 16 121 5.66e-27 110
MsG0780036244.01.T01 MTR_8g069380 55.224 67 30 0 214 280 48 114 7.64e-20 84.0
MsG0780036244.01.T01 MTR_8g051480 59.701 67 26 1 214 280 63 128 2.67e-19 83.2
MsG0780036244.01.T01 MTR_3g039810 51.899 79 30 2 75 153 10 80 9.72e-18 77.4
MsG0780036244.01.T01 MTR_6g012220 57.895 57 18 1 79 135 15 65 6.57e-17 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036244.01.T01 AT5G15210 50.185 271 100 9 20 282 3 246 4.58e-72 225
MsG0780036244.01.T01 AT1G69600 53.659 205 67 5 83 277 29 215 2.09e-65 207
MsG0780036244.01.T01 AT3G28920 49.013 304 105 10 20 296 1 281 6.82e-63 202
MsG0780036244.01.T01 AT5G39760 46.863 271 109 8 30 285 17 267 1.17e-55 184
MsG0780036244.01.T01 AT1G14440 43.363 226 105 5 80 296 85 296 8.73e-53 176
MsG0780036244.01.T01 AT1G14440 43.363 226 105 5 80 296 85 296 8.73e-53 176
MsG0780036244.01.T01 AT2G02540 42.152 223 108 6 82 292 84 297 6.44e-51 172
MsG0780036244.01.T01 AT2G02540 42.152 223 108 6 82 292 84 297 6.44e-51 172
MsG0780036244.01.T01 AT4G24660 45.455 198 83 4 83 280 47 219 3.43e-50 167
MsG0780036244.01.T01 AT4G24660 45.641 195 81 4 83 277 47 216 2.75e-49 165
MsG0780036244.01.T01 AT5G60480 43.939 198 78 5 82 274 34 203 1.39e-48 163
MsG0780036244.01.T01 AT5G65410 43.655 197 94 5 83 279 73 252 1.13e-44 154
MsG0780036244.01.T01 AT1G75240 38.559 236 104 4 80 279 71 301 1.44e-44 155
MsG0780036244.01.T01 AT2G18350 39.899 198 100 4 85 281 82 261 3.01e-41 145
MsG0780036244.01.T01 AT3G50890 39.252 214 99 8 85 291 60 249 1.70e-35 129
MsG0780036244.01.T01 AT5G42780 35.204 196 103 5 85 277 64 238 4.23e-28 110
MsG0780036244.01.T01 AT1G14687 28.283 198 106 4 80 275 2 165 4.29e-20 86.3
MsG0780036244.01.T01 AT1G74660 53.521 71 25 2 83 153 37 99 4.13e-19 81.6
MsG0780036244.01.T01 AT1G74660 61.111 54 19 1 83 136 37 88 7.83e-19 80.9
MsG0780036244.01.T01 AT1G18835 54.930 71 21 2 83 153 24 83 1.27e-17 77.4
MsG0780036244.01.T01 AT3G28917 61.404 57 21 1 82 138 30 85 3.25e-17 76.6

Find 93 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGTGTTGGTGTTGGAGTT+GGG 0.196157 7:+5192011 None:intergenic
ACAATTCTAGAAAGCGTTTC+AGG 0.216225 7:-5191379 MsG0780036244.01.T01:CDS
TTGAGAACACCATTTGAAAA+AGG 0.255600 7:+5191863 None:intergenic
GGTGGTGTTGGTGTTGGAGT+TGG 0.272963 7:+5192010 None:intergenic
AGGGGCGGAGGGGTAGTAAG+AGG 0.274253 7:+5191484 None:intergenic
TGCTCTCTCCGCCGCCTTAC+CGG 0.274469 7:-5191450 MsG0780036244.01.T01:CDS
GGTGGTGGTGAGGAGGAATT+TGG 0.278567 7:+5191515 None:intergenic
TCAGTTTCATGTTGTTGTTC+TGG 0.293454 7:+5191929 None:intergenic
GTGGAAAGTGGTGGTTCTTC+AGG 0.318129 7:+5191614 None:intergenic
TAATATTCTCATTGTTGTTA+AGG 0.328995 7:+5191177 None:intergenic
TGTTGTTGAGGTTGTTAATA+TGG 0.330756 7:+5191967 None:intergenic
ATCGTAGTGTTCTTAAGGTT+TGG 0.334173 7:-5191238 MsG0780036244.01.T01:CDS
GAGACATTCTTTGTAGGTTA+TGG 0.340619 7:+5191778 None:intergenic
GGTTGAAGTGGTGGTGGTGG+TGG 0.346158 7:+5191831 None:intergenic
TTCATCAACATGGTTTGGTT+TGG 0.350778 7:+5191413 None:intergenic
TGTTGATCGTAGTGTTCTTA+AGG 0.355414 7:-5191243 MsG0780036244.01.T01:CDS
CAGAATGAAGGTGGAGTTGT+TGG 0.373866 7:-5191068 MsG0780036244.01.T01:CDS
GGAGTAACTGTTCGTGCTAA+TGG 0.375764 7:-5191047 MsG0780036244.01.T01:CDS
AAGAAGCATGTGAGGGGCGG+AGG 0.375917 7:+5191472 None:intergenic
GAGAATTCATCAACATGGTT+TGG 0.380377 7:+5191408 None:intergenic
TGTAGGTTATGGTAGGTTGA+TGG 0.383764 7:+5191789 None:intergenic
CACAAGAATGTTGAGATTCA+TGG 0.386670 7:-5191110 MsG0780036244.01.T01:CDS
ATTTGGGCTCCGGTGGGAAA+AGG 0.392682 7:+5191532 None:intergenic
GTTGGTGGTGGTGTTGGTGT+TGG 0.400036 7:+5192004 None:intergenic
TGGTGTTGGTGTTGGAGTTG+GGG 0.405042 7:+5192012 None:intergenic
GTTCTTCAGGTTCACGGCGG+TGG 0.414474 7:+5191627 None:intergenic
CTGAAATTTGCTGAGAAAGT+TGG 0.415196 7:-5191323 MsG0780036244.01.T01:CDS
TGAATTCACCACAACCATCT+AGG 0.423468 7:+5191723 None:intergenic
ATTGATGTTGGTGGTGGTGT+TGG 0.426088 7:+5191998 None:intergenic
CGGTGGGAAAAGGGTGGTGG+TGG 0.426898 7:+5191542 None:intergenic
GAAAAGGGTGGTGGTGGAAG+TGG 0.427112 7:+5191548 None:intergenic
TTGTTCTGGTGATTTAGTTA+AGG 0.427703 7:+5191943 None:intergenic
CTCCGGTGGGAAAAGGGTGG+TGG 0.429757 7:+5191539 None:intergenic
GGTGGTTGAAGTGGTGGTGG+TGG 0.435301 7:+5191828 None:intergenic
GGAGGAGATCGGTGGTGGTG+AGG 0.437213 7:+5191505 None:intergenic
GGGTAGTAAGAGGAGGAGAT+CGG 0.438670 7:+5191494 None:intergenic
GTTGAGGTTGTTAATATGGT+TGG 0.439657 7:+5191971 None:intergenic
GGCGGAGGGGTAGTAAGAGG+AGG 0.440166 7:+5191487 None:intergenic
GTGGTGGTGAGGAGGAATTT+GGG 0.444504 7:+5191516 None:intergenic
CTAGGTGGTCATGCCCTAGA+TGG 0.446320 7:-5191737 MsG0780036244.01.T01:CDS
GGGCTCCGGTGGGAAAAGGG+TGG 0.457386 7:+5191536 None:intergenic
GTTCACGGCGGTGGAAGTTA+CGG 0.458240 7:+5191636 None:intergenic
TTTAAGGATGTTGGGTCGGT+TGG 0.464594 7:+5191680 None:intergenic
TGAAATTTGCTGAGAAAGTT+GGG 0.467964 7:-5191322 MsG0780036244.01.T01:CDS
GGGTCGGTTGGTGTTGCTGT+GGG 0.476226 7:+5191692 None:intergenic
TGTGGTGGTTGAAGTGGTGG+TGG 0.482629 7:+5191825 None:intergenic
ATGGTTGGTGCTATTGATGT+TGG 0.487966 7:+5191986 None:intergenic
GGAGATCGGTGGTGGTGAGG+AGG 0.490231 7:+5191508 None:intergenic
CACAATCATTATCAGAATGA+AGG 0.494541 7:-5191080 MsG0780036244.01.T01:CDS
TGTTGTGGTGGTTGAAGTGG+TGG 0.495077 7:+5191822 None:intergenic
AGAAGCATGTGAGGGGCGGA+GGG 0.495592 7:+5191473 None:intergenic
GTGGTGGTTCTTCAGGTTCA+CGG 0.497308 7:+5191621 None:intergenic
TAAGAGGAGGAGATCGGTGG+TGG 0.498462 7:+5191500 None:intergenic
TGGAGTTGGGGTTATGTCCA+TGG 0.500058 7:+5192024 None:intergenic
GTGAGGAGGAATTTGGGCTC+CGG 0.500275 7:+5191522 None:intergenic
GTGGTGGAAGTGGTTGATGA+CGG 0.500583 7:+5191558 None:intergenic
TTTAGTTAAGGTTGTTGTTG+AGG 0.502769 7:+5191955 None:intergenic
AGGAGGAATTTGGGCTCCGG+TGG 0.505710 7:+5191525 None:intergenic
TTTGGGCTCCGGTGGGAAAA+GGG 0.507171 7:+5191533 None:intergenic
CATTCTTTGTAGGTTATGGT+AGG 0.517382 7:+5191782 None:intergenic
GGTGCTATTGATGTTGGTGG+TGG 0.518237 7:+5191992 None:intergenic
GATGGTTGTTCGTGGTGTTG+TGG 0.520598 7:+5191807 None:intergenic
GTTGGTGCTATTGATGTTGG+TGG 0.524202 7:+5191989 None:intergenic
AACAATGAGAATATTAATGA+TGG 0.527160 7:-5191170 MsG0780036244.01.T01:CDS
GACCACCTAGGTTTGCTGCA+TGG 0.528612 7:+5191750 None:intergenic
GGTAGGTTGATGGTTGTTCG+TGG 0.533553 7:+5191799 None:intergenic
GAATTCACCACAACCATCTA+GGG 0.539304 7:+5191724 None:intergenic
ACATGAGTTGTGGTGGAAAG+TGG 0.548946 7:+5191602 None:intergenic
GAGAGAGCAAGAAGCATGTG+AGG 0.550052 7:+5191464 None:intergenic
GAAGCATGTGAGGGGCGGAG+GGG 0.553313 7:+5191474 None:intergenic
TGGTGTTGTGGTGGTTGAAG+TGG 0.554818 7:+5191819 None:intergenic
TGGGTCGGTTGGTGTTGCTG+TGG 0.558596 7:+5191691 None:intergenic
GGTTGTTCGTGGTGTTGTGG+TGG 0.567160 7:+5191810 None:intergenic
TCCTTAAAATGTGCTGCTTG+TGG 0.574232 7:-5191665 MsG0780036244.01.T01:CDS
GGTCATGCCCTAGATGGTTG+TGG 0.575703 7:-5191731 MsG0780036244.01.T01:CDS
TAGTAAGAGGAGGAGATCGG+TGG 0.577001 7:+5191497 None:intergenic
TTGTGTTCTTCATCTTCAAG+AGG 0.585430 7:+5191128 None:intergenic
TTCAATGACATGAGTTGTGG+TGG 0.585624 7:+5191595 None:intergenic
AGCAAGAAGCATGTGAGGGG+CGG 0.594492 7:+5191469 None:intergenic
AGAGAGCAAGAAGCATGTGA+GGG 0.597359 7:+5191465 None:intergenic
AATCATTATCAGAATGAAGG+TGG 0.598316 7:-5191077 MsG0780036244.01.T01:CDS
GTGGAAGTGGTTGATGACGG+TGG 0.599219 7:+5191561 None:intergenic
GAGAGCAAGAAGCATGTGAG+GGG 0.602424 7:+5191466 None:intergenic
ATATTCAATGACATGAGTTG+TGG 0.623812 7:+5191592 None:intergenic
AGTGGTTGATGACGGTGGTG+AGG 0.625162 7:+5191566 None:intergenic
GGAGGAATTTGGGCTCCGGT+GGG 0.630361 7:+5191526 None:intergenic
AGAGTGAGAATTCATCAACA+TGG 0.636406 7:+5191403 None:intergenic
CATCTAGGGCATGACCACCT+AGG 0.648371 7:+5191738 None:intergenic
TGAGTTGTGGTGGAAAGTGG+TGG 0.661282 7:+5191605 None:intergenic
CACGGCGGTGGAAGTTACGG+TGG 0.670619 7:+5191639 None:intergenic
AACCATGCAGCAAACCTAGG+TGG 0.685477 7:-5191752 MsG0780036244.01.T01:CDS
AATTTGCTGAGAAAGTTGGG+TGG 0.726025 7:-5191319 MsG0780036244.01.T01:CDS
GTGGTTCTTCAGGTTCACGG+CGG 0.747111 7:+5191624 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATGAGAATATTAATGA+TGG - Chr7:5191880-5191899 MsG0780036244.01.T01:CDS 20.0%
!!! TAATATTCTCATTGTTGTTA+AGG + Chr7:5191876-5191895 None:intergenic 20.0%
!!! AAAATCTCACCTTTTTCAAA+TGG - Chr7:5191178-5191197 MsG0780036244.01.T01:CDS 25.0%
AATCATTATCAGAATGAAGG+TGG - Chr7:5191973-5191992 MsG0780036244.01.T01:CDS 30.0%
ATATTCAATGACATGAGTTG+TGG + Chr7:5191461-5191480 None:intergenic 30.0%
CACAATCATTATCAGAATGA+AGG - Chr7:5191970-5191989 MsG0780036244.01.T01:CDS 30.0%
TGTTGTTGAGGTTGTTAATA+TGG + Chr7:5191086-5191105 None:intergenic 30.0%
TTGAGAACACCATTTGAAAA+AGG + Chr7:5191190-5191209 None:intergenic 30.0%
TTGTTCTGGTGATTTAGTTA+AGG + Chr7:5191110-5191129 None:intergenic 30.0%
! TTTAGTTAAGGTTGTTGTTG+AGG + Chr7:5191098-5191117 None:intergenic 30.0%
!! CATGAGTTTTGTAATGAGAT+TGG - Chr7:5191784-5191803 MsG0780036244.01.T01:CDS 30.0%
!! TGAAATTTGCTGAGAAAGTT+GGG - Chr7:5191728-5191747 MsG0780036244.01.T01:CDS 30.0%
!!! AGATTTTTGTTGTTGAGGTT+GGG + Chr7:5191165-5191184 None:intergenic 30.0%
!!! GTTTTTGAGACATTCTTTGT+AGG + Chr7:5191281-5191300 None:intergenic 30.0%
AGAGTGAGAATTCATCAACA+TGG + Chr7:5191650-5191669 None:intergenic 35.0%
ATCGTAGTGTTCTTAAGGTT+TGG - Chr7:5191812-5191831 MsG0780036244.01.T01:CDS 35.0%
CACAAGAATGTTGAGATTCA+TGG - Chr7:5191940-5191959 MsG0780036244.01.T01:CDS 35.0%
CATTCTTTGTAGGTTATGGT+AGG + Chr7:5191271-5191290 None:intergenic 35.0%
GAGAATTCATCAACATGGTT+TGG + Chr7:5191645-5191664 None:intergenic 35.0%
GAGACATTCTTTGTAGGTTA+TGG + Chr7:5191275-5191294 None:intergenic 35.0%
GTTGAGGTTGTTAATATGGT+TGG + Chr7:5191082-5191101 None:intergenic 35.0%
TGTTGATCGTAGTGTTCTTA+AGG - Chr7:5191807-5191826 MsG0780036244.01.T01:CDS 35.0%
TTGTGTTCTTCATCTTCAAG+AGG + Chr7:5191925-5191944 None:intergenic 35.0%
! GTTGTTAAGGTTTTCTCGTT+TGG + Chr7:5191863-5191882 None:intergenic 35.0%
! TCAGTTTCATGTTGTTGTTC+TGG + Chr7:5191124-5191143 None:intergenic 35.0%
!! ACAATTCTAGAAAGCGTTTC+AGG - Chr7:5191671-5191690 MsG0780036244.01.T01:CDS 35.0%
!! ACATTTTAAGGATGTTGGGT+CGG + Chr7:5191377-5191396 None:intergenic 35.0%
!! CAGCACATTTTAAGGATGTT+GGG + Chr7:5191381-5191400 None:intergenic 35.0%
!! CTGAAATTTGCTGAGAAAGT+TGG - Chr7:5191727-5191746 MsG0780036244.01.T01:CDS 35.0%
!! TTCATCAACATGGTTTGGTT+TGG + Chr7:5191640-5191659 None:intergenic 35.0%
!!! AGGTGAGATTTTTGTTGTTG+AGG + Chr7:5191170-5191189 None:intergenic 35.0%
!!! GAGATTTTTGTTGTTGAGGT+TGG + Chr7:5191166-5191185 None:intergenic 35.0%
AAAAACCATGCAGCAAACCT+AGG - Chr7:5191295-5191314 MsG0780036244.01.T01:CDS 40.0%
GAATTCACCACAACCATCTA+GGG + Chr7:5191329-5191348 None:intergenic 40.0%
TGAATTCACCACAACCATCT+AGG + Chr7:5191330-5191349 None:intergenic 40.0%
TTCAATGACATGAGTTGTGG+TGG + Chr7:5191458-5191477 None:intergenic 40.0%
! TGAGGTTGGGAATTTTGTTG+TGG + Chr7:5191152-5191171 None:intergenic 40.0%
! TGTAGGTTATGGTAGGTTGA+TGG + Chr7:5191264-5191283 None:intergenic 40.0%
!! AATTTGCTGAGAAAGTTGGG+TGG - Chr7:5191731-5191750 MsG0780036244.01.T01:CDS 40.0%
!! ATGGTTGGTGCTATTGATGT+TGG + Chr7:5191067-5191086 None:intergenic 40.0%
!! GAGGTTGGGAATTTTGTTGT+GGG + Chr7:5191151-5191170 None:intergenic 40.0%
!! GCAGCACATTTTAAGGATGT+TGG + Chr7:5191382-5191401 None:intergenic 40.0%
!! TCCTTAAAATGTGCTGCTTG+TGG - Chr7:5191385-5191404 MsG0780036244.01.T01:CDS 40.0%
CAGAATGAAGGTGGAGTTGT+TGG - Chr7:5191982-5192001 MsG0780036244.01.T01:CDS 45.0%
GGAGTAACTGTTCGTGCTAA+TGG - Chr7:5192003-5192022 MsG0780036244.01.T01:CDS 45.0%
TTTAAGGATGTTGGGTCGGT+TGG + Chr7:5191373-5191392 None:intergenic 45.0%
! ACATGAGTTGTGGTGGAAAG+TGG + Chr7:5191451-5191470 None:intergenic 45.0%
! AGAGAGCAAGAAGCATGTGA+GGG + Chr7:5191588-5191607 None:intergenic 45.0%
! GCCACAAGCAGCACATTTTA+AGG + Chr7:5191389-5191408 None:intergenic 45.0%
!! ATTGATGTTGGTGGTGGTGT+TGG + Chr7:5191055-5191074 None:intergenic 45.0%
!! GTTGGTGCTATTGATGTTGG+TGG + Chr7:5191064-5191083 None:intergenic 45.0%
!! TTTGGAGCTGCAACGTTTTC+CGG + Chr7:5191622-5191641 None:intergenic 45.0%
AACCATGCAGCAAACCTAGG+TGG - Chr7:5191298-5191317 MsG0780036244.01.T01:CDS 50.0%
GGGTAGTAAGAGGAGGAGAT+CGG + Chr7:5191559-5191578 None:intergenic 50.0%
GTGGAAAGTGGTGGTTCTTC+AGG + Chr7:5191439-5191458 None:intergenic 50.0%
TAGTAAGAGGAGGAGATCGG+TGG + Chr7:5191556-5191575 None:intergenic 50.0%
TGTTGTGGTGGTTGAAGTGG+TGG + Chr7:5191231-5191250 None:intergenic 50.0%
! AGCTGCAACGTTTTCCGGTA+AGG + Chr7:5191617-5191636 None:intergenic 50.0%
! GAGAGAGCAAGAAGCATGTG+AGG + Chr7:5191589-5191608 None:intergenic 50.0%
! GAGAGCAAGAAGCATGTGAG+GGG + Chr7:5191587-5191606 None:intergenic 50.0%
! GATGGTTGTTCGTGGTGTTG+TGG + Chr7:5191246-5191265 None:intergenic 50.0%
! GTGGTGGTGAGGAGGAATTT+GGG + Chr7:5191537-5191556 None:intergenic 50.0%
! GTGGTGGTTCTTCAGGTTCA+CGG + Chr7:5191432-5191451 None:intergenic 50.0%
! TGAGTTGTGGTGGAAAGTGG+TGG + Chr7:5191448-5191467 None:intergenic 50.0%
! TGCAACGTTTTCCGGTAAGG+CGG + Chr7:5191614-5191633 None:intergenic 50.0%
!! GGTAGGTTGATGGTTGTTCG+TGG + Chr7:5191254-5191273 None:intergenic 50.0%
!! GGTGCTATTGATGTTGGTGG+TGG + Chr7:5191061-5191080 None:intergenic 50.0%
!! GTGGTGGAAGTGGTTGATGA+CGG + Chr7:5191495-5191514 None:intergenic 50.0%
!! GTGGTGTTGGTGTTGGAGTT+GGG + Chr7:5191042-5191061 None:intergenic 50.0%
!! TGGTGTTGGTGTTGGAGTTG+GGG + Chr7:5191041-5191060 None:intergenic 50.0%
!! TGGTGTTGTGGTGGTTGAAG+TGG + Chr7:5191234-5191253 None:intergenic 50.0%
ATTTGGGCTCCGGTGGGAAA+AGG + Chr7:5191521-5191540 None:intergenic 55.0%
CTAGGTGGTCATGCCCTAGA+TGG - Chr7:5191313-5191332 MsG0780036244.01.T01:CDS 55.0%
GGTCATGCCCTAGATGGTTG+TGG - Chr7:5191319-5191338 MsG0780036244.01.T01:CDS 55.0%
GTGAGGAGGAATTTGGGCTC+CGG + Chr7:5191531-5191550 None:intergenic 55.0%
GTTCACGGCGGTGGAAGTTA+CGG + Chr7:5191417-5191436 None:intergenic 55.0%
TAAGAGGAGGAGATCGGTGG+TGG + Chr7:5191553-5191572 None:intergenic 55.0%
TGTGGTGGTTGAAGTGGTGG+TGG + Chr7:5191228-5191247 None:intergenic 55.0%
TTTGGGCTCCGGTGGGAAAA+GGG + Chr7:5191520-5191539 None:intergenic 55.0%
! AACGTTTTCCGGTAAGGCGG+CGG + Chr7:5191611-5191630 None:intergenic 55.0%
! AGCAAGAAGCATGTGAGGGG+CGG + Chr7:5191584-5191603 None:intergenic 55.0%
! CATCTAGGGCATGACCACCT+AGG + Chr7:5191315-5191334 None:intergenic 55.0%
! GGTGGTGGTGAGGAGGAATT+TGG + Chr7:5191538-5191557 None:intergenic 55.0%
! GTGGTTCTTCAGGTTCACGG+CGG + Chr7:5191429-5191448 None:intergenic 55.0%
!! AGTGGTTGATGACGGTGGTG+AGG + Chr7:5191487-5191506 None:intergenic 55.0%
!! GAAAAGGGTGGTGGTGGAAG+TGG + Chr7:5191505-5191524 None:intergenic 55.0%
!! GACCACCTAGGTTTGCTGCA+TGG + Chr7:5191303-5191322 None:intergenic 55.0%
!! GGTGGTGTTGGTGTTGGAGT+TGG + Chr7:5191043-5191062 None:intergenic 55.0%
!! GGTTGTTCGTGGTGTTGTGG+TGG + Chr7:5191243-5191262 None:intergenic 55.0%
!! GTGGAAGTGGTTGATGACGG+TGG + Chr7:5191492-5191511 None:intergenic 55.0%
!! GTTGGTGGTGGTGTTGGTGT+TGG + Chr7:5191049-5191068 None:intergenic 55.0%
AGGAGGAATTTGGGCTCCGG+TGG + Chr7:5191528-5191547 None:intergenic 60.0%
GGAGGAATTTGGGCTCCGGT+GGG + Chr7:5191527-5191546 None:intergenic 60.0%
! AAGAAGCATGTGAGGGGCGG+AGG + Chr7:5191581-5191600 None:intergenic 60.0%
! AGAAGCATGTGAGGGGCGGA+GGG + Chr7:5191580-5191599 None:intergenic 60.0%
! CACCACCACCCTTTTCCCAC+CGG - Chr7:5191509-5191528 MsG0780036244.01.T01:CDS 60.0%
! GTTCTTCAGGTTCACGGCGG+TGG + Chr7:5191426-5191445 None:intergenic 60.0%
!! GGGTCGGTTGGTGTTGCTGT+GGG + Chr7:5191361-5191380 None:intergenic 60.0%
!! GGTGGTTGAAGTGGTGGTGG+TGG + Chr7:5191225-5191244 None:intergenic 60.0%
!! GGTTGAAGTGGTGGTGGTGG+TGG + Chr7:5191222-5191241 None:intergenic 60.0%
!! TGAAGTGGTGGTGGTGGTGG+TGG + Chr7:5191219-5191238 None:intergenic 60.0%
!! TGGGTCGGTTGGTGTTGCTG+TGG + Chr7:5191362-5191381 None:intergenic 60.0%
AGGGGCGGAGGGGTAGTAAG+AGG + Chr7:5191569-5191588 None:intergenic 65.0%
CACGGCGGTGGAAGTTACGG+TGG + Chr7:5191414-5191433 None:intergenic 65.0%
CTCCGGTGGGAAAAGGGTGG+TGG + Chr7:5191514-5191533 None:intergenic 65.0%
GAAGCATGTGAGGGGCGGAG+GGG + Chr7:5191579-5191598 None:intergenic 65.0%
GGCGGAGGGGTAGTAAGAGG+AGG + Chr7:5191566-5191585 None:intergenic 65.0%
TGCTCTCTCCGCCGCCTTAC+CGG - Chr7:5191600-5191619 MsG0780036244.01.T01:CDS 65.0%
! CGGTGGGAAAAGGGTGGTGG+TGG + Chr7:5191511-5191530 None:intergenic 65.0%
! GGAGATCGGTGGTGGTGAGG+AGG + Chr7:5191545-5191564 None:intergenic 65.0%
! GGAGGAGATCGGTGGTGGTG+AGG + Chr7:5191548-5191567 None:intergenic 65.0%
GGGCTCCGGTGGGAAAAGGG+TGG + Chr7:5191517-5191536 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 5191028 5192044 5191028 ID=MsG0780036244.01;Name=MsG0780036244.01
Chr7 mRNA 5191028 5192044 5191028 ID=MsG0780036244.01.T01;Parent=MsG0780036244.01;Name=MsG0780036244.01.T01;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|338
Chr7 exon 5191028 5192044 5191028 ID=MsG0780036244.01.T01:exon:2873;Parent=MsG0780036244.01.T01
Chr7 CDS 5191028 5192044 5191028 ID=MsG0780036244.01.T01:cds;Parent=MsG0780036244.01.T01
Gene Sequence

>MsG0780036244.01.T01

ATGGACATAACCCCAACTCCAACACCAACACCACCACCAACATCAATAGCACCAACCATATTAACAACCTCAACAACAACCTTAACTAAATCACCAGAACAACAACATGAAACTGAAACACCCACAACAAAATTCCCAACCTCAACAACAAAAATCTCACCTTTTTCAAATGGTGTTCTCAAACGTTTCCACCACCACCACCACCACTTCAACCACCACAACACCACGAACAACCATCAACCTACCATAACCTACAAAGAATGTCTCAAAAACCATGCAGCAAACCTAGGTGGTCATGCCCTAGATGGTTGTGGTGAATTCATGACATCACCCACAGCAACACCAACCGACCCAACATCCTTAAAATGTGCTGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGAACCTGAAGAACCACCACTTTCCACCACAACTCATGTCATTGAATATCAACCTCACCACCGTCATCAACCACTTCCACCACCACCCTTTTCCCACCGGAGCCCAAATTCCTCCTCACCACCACCGATCTCCTCCTCTTACTACCCCTCCGCCCCTCACATGCTTCTTGCTCTCTCCGCCGCCTTACCGGAAAACGTTGCAGCTCCAAACCAAACCATGTTGATGAATTCTCACTCTAACAATTCTAGAAAGCGTTTCAGGACAAAGTTTACTCAAGATCAGAAAGATAAGATGCTGAAATTTGCTGAGAAAGTTGGGTGGAAGATGCAGAAAAAAGATGATGAATTTGTTCATGAGTTTTGTAATGAGATTGGTGTTGATCGTAGTGTTCTTAAGGTTTGGATGCATAACAACAAGAACACTTTAGCCAAACGAGAAAACCTTAACAACAATGAGAATATTAATGATGGTGTTAAGAGTTTTCAGCTACCTCTTGAAGATGAAGAACACAAGAATGTTGAGATTCATGGTCTTAATCACAATCATTATCAGAATGAAGGTGGAGTTGTTGGAGTAACTGTTCGTGCTAATGGTTCATCATCTTCTTCTTAA
Protein sequence

>MsG0780036244.01.T01

MDITPTPTPTPPPTSIAPTILTTSTTTLTKSPEQQHETETPTTKFPTSTTKISPFSNGVLKRFHHHHHHFNHHNTTNNHQPTITYKECLKNHAANLGGHALDGCGEFMTSPTATPTDPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSHRSPNSSSPPPISSSYYPSAPHMLLALSAALPENVAAPNQTMLMNSHSNNSRKRFRTKFTQDQKDKMLKFAEKVGWKMQKKDDEFVHEFCNEIGVDRSVLKVWMHNNKNTLAKRENLNNNENINDGVKSFQLPLEDEEHKNVEIHGLNHNHYQNEGGVVGVTVRANGSSSSS*