AlfalfaGEDB | MsG0780036934.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036934.01

KEGG: -
GO: GO:0000786 GO:0003677 GO:0046982
PFAM: PF00046 PF00125

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036934.01.T01	AES78040.1	96.721	183	6	0	236	418	1	183	1.48E-124	368

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036934.01.T01	P22843	70.677	133	38	1	1	133	1	132	2.17E-54	180

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036934.01.T01	G7KVS3	96.721	183	6	0	236	418	1	183	7.08e-125	368

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TFs/TRs:

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Gene ID	Type	Classification
MsG0780036934.01.T01	TF	HB-WOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036934.01.T01	MTR_7g023810	96.721	183	6	0	236	418	1	183	1.80e-128	368
MsG0780036934.01.T01	MTR_7g023830	81.203	133	23	1	1	133	1	131	1.85e-66	208
MsG0780036934.01.T01	MTR_1g115315	55.708	219	60	7	236	418	5	222	1.23e-64	208
MsG0780036934.01.T01	MTR_1g115315	55.251	219	61	7	236	418	5	222	1.88e-64	207
MsG0780036934.01.T01	MTR_4g097175	68.421	133	41	1	1	133	1	132	3.91e-53	174
MsG0780036934.01.T01	MTR_1g023630	68.421	133	41	1	1	133	1	132	3.91e-53	174
MsG0780036934.01.T01	MTR_8g061940	68.421	133	41	1	1	133	1	132	3.91e-53	174
MsG0780036934.01.T01	MTR_8g099430	68.421	133	41	1	1	133	1	132	7.35e-53	173
MsG0780036934.01.T01	MTR_7g059070	67.669	133	42	1	1	133	1	132	1.37e-52	172
MsG0780036934.01.T01	MTR_5g029820	67.669	133	42	1	1	133	1	132	1.37e-52	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036934.01.T01	AT5G10980	68.421	133	41	1	1	133	1	132	4.10e-53	174
MsG0780036934.01.T01	AT4G40040	68.421	133	41	1	1	133	1	132	4.10e-53	174
MsG0780036934.01.T01	AT4G40040	68.421	133	41	1	1	133	1	132	4.10e-53	174
MsG0780036934.01.T01	AT4G40040	68.421	133	41	1	1	133	1	132	4.10e-53	174
MsG0780036934.01.T01	AT4G40030	68.421	133	41	1	1	133	1	132	4.10e-53	174
MsG0780036934.01.T01	AT4G40030	68.421	133	41	1	1	133	1	132	4.10e-53	174
MsG0780036934.01.T01	AT4G40030	68.421	133	41	1	1	133	1	132	4.10e-53	174
MsG0780036934.01.T01	AT5G65360	67.669	133	42	1	1	133	1	132	1.17e-52	172
MsG0780036934.01.T01	AT5G10390	67.669	133	42	1	1	133	1	132	1.17e-52	172
MsG0780036934.01.T01	AT5G10400	67.669	133	42	1	1	133	1	132	1.17e-52	172

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Find 84 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCGCAGCTATAGATGG+AGG	0.683802	7:+16769268	None:intergenic
AAATAATGTTAATGATGAAC+CGG	0.459463	7:-16766219	MsG0780036934.01.T01:CDS
AACCTCTAATGAAGTTTCTT+TGG	0.255439	7:-16769314	MsG0780036934.01.T01:CDS
AAGAGTTTCGACTTGTTCAT+CGG	0.503160	7:+16766724	None:intergenic
AAGGAACAACGATATCGTCC+TGG	0.574521	7:-16770899	MsG0780036934.01.T01:CDS
AAGGATGCGAGTTGATCCCA+AGG	0.658406	7:-16770960	MsG0780036934.01.T01:CDS
AAGTTTAAACTAGCCACAAT+TGG	0.477109	7:-16770929	MsG0780036934.01.T01:CDS
AATAGGCGTGCTAGGTCAAA+GGG	0.534387	7:-16766251	MsG0780036934.01.T01:CDS
AATTCAAGTCCTCTAAGTAC+TGG	0.519200	7:+16766114	None:intergenic
AATTGTACGCTTTGGTGTCG+GGG	0.569351	7:+16769411	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCTCTAATGAAGTTTCTT+TGG	-	Chr7:16767775-16767794	MsG0780036934.01.T01:intron	30.0%
AAGTTTAAACTAGCCACAAT+TGG	-	Chr7:16766160-16766179	MsG0780036934.01.T01:CDS	30.0%
ACTAAACACTTTGACAATTG+CGG	+	Chr7:16768486-16768505	None:intergenic	30.0%
AGACAAACCTTATACAACAA+AGG	-	Chr7:16767137-16767156	MsG0780036934.01.T01:intron	30.0%
ATACATCACAAAATAGTGAG+AGG	-	Chr7:16766755-16766774	MsG0780036934.01.T01:CDS	30.0%
ATGACCGATAATTTGACAAT+GGG	+	Chr7:16767588-16767607	None:intergenic	30.0%
ATTAAGGATACATATGTAGC+AGG	-	Chr7:16766792-16766811	MsG0780036934.01.T01:CDS	30.0%
CAATGATAAGAAAACTGAAC+CGG	-	Chr7:16770915-16770934	MsG0780036934.01.T01:CDS	30.0%
CACAAGTATGCTTAAATTGT+TGG	-	Chr7:16767370-16767389	MsG0780036934.01.T01:intron	30.0%
CTATTGCACTTCTTAAGATT+AGG	-	Chr7:16766215-16766234	MsG0780036934.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	16766076	16771035	16766076	ID=MsG0780036934.01;Name=MsG0780036934.01
Chr7	mRNA	16766076	16771035	16766076	ID=MsG0780036934.01.T01;Parent=MsG0780036934.01;Name=MsG0780036934.01.T01;_AED=0.59;_eAED=0.59;_QI=0\|0\|0\|0.6\|0.5\|0.8\|5\|0\|418
Chr7	exon	16770636	16771035	16770636	ID=MsG0780036934.01.T01:exon:2822;Parent=MsG0780036934.01.T01
Chr7	exon	16770113	16770183	16770113	ID=MsG0780036934.01.T01:exon:2821;Parent=MsG0780036934.01.T01
Chr7	exon	16769249	16769470	16769249	ID=MsG0780036934.01.T01:exon:2820;Parent=MsG0780036934.01.T01
Chr7	exon	16766633	16766825	16766633	ID=MsG0780036934.01.T01:exon:2819;Parent=MsG0780036934.01.T01
Chr7	exon	16766076	16766446	16766076	ID=MsG0780036934.01.T01:exon:2818;Parent=MsG0780036934.01.T01
Chr7	CDS	16770636	16771035	16770636	ID=MsG0780036934.01.T01:cds;Parent=MsG0780036934.01.T01
Chr7	CDS	16770113	16770183	16770113	ID=MsG0780036934.01.T01:cds;Parent=MsG0780036934.01.T01
Chr7	CDS	16769249	16769470	16769249	ID=MsG0780036934.01.T01:cds;Parent=MsG0780036934.01.T01
Chr7	CDS	16766633	16766825	16766633	ID=MsG0780036934.01.T01:cds;Parent=MsG0780036934.01.T01
Chr7	CDS	16766076	16766446	16766076	ID=MsG0780036934.01.T01:cds;Parent=MsG0780036934.01.T01

Gene Sequence

>MsG0780036934.01.T01

ATGGCACGTTCAAAGCAAACCGCTCATATGTCAACTTGTGCTGCAAGGGCTGCAAGGATGCGAGTTGATCCCAAGGCCGAACTTAAGTTTAAACTAGCCACAATTGGAGTTAAGAAGGAACAACGATATCGTCCTGGAACTATTGCACTTCTTAAGATTAGGAGATACCAGAAGAGTACTAAGCTGTTGATAAAAAAGCTTCCTTTTCAGAGGTTGGTCCGTGAAATTGTTCAGAACATCAAGATTGATCTTCGTTTCCAGACTTGTGCTGTTCTTGCATTGCAGATGGCTTCTGAGGCACGCCTTGTTGGTCTCTTAGAGGATGCTAAATTGTGTGCTATCCATGCTAAGCGAGTCACTGTTATGCCCGAGGATATACAATTAGCGAGAAGGATCCGTGAAGCCACAAAATCTTTTGCCCAAGTTGTCTCAAATTCTGATGTTGTGCAGAATGAACCACTCCCGATTCTGCAAACTATTGATAATGTTGATCGCAGTAAAAAGCCTGCCCCGACACCAAAGCGTACAATTCAAAATTTTAGGGAAAAAGAAAACCCGGATGGTATCAACTCTTCCGAAGCATTTTCAGTGCCCGCTAAGATTGCAACCTCTAATGAAGTTTCTTTGGAAATTTTAGATGTTCACTTTTCACCTCCATCTATAGCTGCGACTTTCATGGAAGAAACTATTTTGAAAAAGAAAGAGATGGAGTGGCAGAAGAACTGTTTTAATCAGAACGCCAATGTTGGAATGATGCAAGTGAATGTGATGACCGATGAACAAGTCGAAACTCTTCGGAAACAAATAGCAGTTTATTCTGTAATCTCTGAACAACTCATTCAAACGCATAAAACCTTATCTTCTCAACAAGATCTCACTCTCACTGGGTCTACTAGGCTGAGGCAGCGTTGGACACCAACACCTGTGCAACTGCAAAGTTTGGAGCGAATATTTGAAGCTGAGACGGGGACTCCTAGTAAGGAAAAGATAAAGGAGATAACCGCTGATTTAACCAAGCACGGGCCGATTTCAGAGACCAGTGTGTATAATTGGTTTCAGAATAGGCGTGCTAGGTCAAAGGGAAAGCAGCAAAATAATGTTAATGATGAACCGGAAGTAGAGACTGAGGTTGATTCCAATGATAAGAAAACTGAACCGGAGATCGTTGCATCTCAGTCTGCTCAAAATTTGTGCAGCCAGTACTTAGAGGACTTGAATTCCGAATCAGATGACAGTTTACGACGCTCTAGAAACTGA

Protein sequence

>MsG0780036934.01.T01

MARSKQTAHMSTCAARAARMRVDPKAELKFKLATIGVKKEQRYRPGTIALLKIRRYQKSTKLLIKKLPFQRLVREIVQNIKIDLRFQTCAVLALQMASEARLVGLLEDAKLCAIHAKRVTVMPEDIQLARRIREATKSFAQVVSNSDVVQNEPLPILQTIDNVDRSKKPAPTPKRTIQNFREKENPDGINSSEAFSVPAKIATSNEVSLEILDVHFSPPSIAATFMEETILKKKEMEWQKNCFNQNANVGMMQVNVMTDEQVETLRKQIAVYSVISEQLIQTHKTLSSQQDLTLTGSTRLRQRWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGPISETSVYNWFQNRRARSKGKQQNNVNDEPEVETEVDSNDKKTEPEIVASQSAQNLCSQYLEDLNSESDDSLRRSRN*