AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036987.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036987.01.T01 MTR_7g025010 92.840 405 28 1 1 405 1 404 0.0 765
MsG0780036987.01.T01 MTR_4g088070 57.627 413 126 8 1 405 1 372 2.46e-138 402
MsG0780036987.01.T01 MTR_4g088080 57.522 339 108 6 7 339 8 316 1.06e-110 328
MsG0780036987.01.T01 MTR_2g015000 42.396 434 194 12 1 406 1 406 3.40e-82 259
MsG0780036987.01.T01 MTR_3g462480 64.865 74 26 0 336 409 20 93 1.02e-24 97.8
MsG0780036987.01.T01 MTR_4g088065 54.955 111 33 3 56 161 134 232 2.20e-24 101
MsG0780036987.01.T01 MTR_6g027390 63.333 60 22 0 39 98 24 83 3.64e-22 96.3
MsG0780036987.01.T01 MTR_7g086940 66.667 60 20 0 37 96 18 77 4.34e-22 95.5
MsG0780036987.01.T01 MTR_4g084550 41.667 84 49 0 27 110 44 127 3.64e-18 82.4
MsG0780036987.01.T01 MTR_5g081990 41.250 80 47 0 29 108 15 94 8.27e-16 75.5
MsG0780036987.01.T01 MTR_8g107210 50.000 62 31 0 47 108 96 157 1.16e-15 78.2
MsG0780036987.01.T01 MTR_5g021930 48.438 64 32 1 47 109 30 93 9.58e-15 74.7
MsG0780036987.01.T01 MTR_1g115315 42.857 77 40 1 30 106 72 144 4.18e-14 72.4
MsG0780036987.01.T01 MTR_1g115315 42.857 77 40 1 30 106 72 144 4.68e-14 72.4
MsG0780036987.01.T01 MTR_1g019130 46.774 62 33 0 47 108 90 151 2.13e-13 69.7
MsG0780036987.01.T01 MTR_4g063735 45.161 62 34 0 47 108 25 86 3.14e-13 69.7
MsG0780036987.01.T01 MTR_1g019130 46.774 62 33 0 47 108 90 151 6.83e-13 68.6
MsG0780036987.01.T01 MTR_3g115620 44.444 63 35 0 45 107 80 142 8.65e-13 67.8
MsG0780036987.01.T01 MTR_7g060630 39.726 73 44 0 41 113 2 74 3.45e-12 65.9
MsG0780036987.01.T01 MTR_0777s0020 49.425 87 39 1 80 161 50 136 3.42e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036987.01.T01 AT5G45980 52.344 128 53 1 1 120 1 128 5.83e-40 145
MsG0780036987.01.T01 AT5G45980 39.560 91 46 2 325 406 235 325 7.73e-11 63.5
MsG0780036987.01.T01 AT3G03660 68.519 54 17 0 45 98 31 84 1.40e-21 94.0
MsG0780036987.01.T01 AT3G03660 68.519 54 17 0 45 98 31 84 2.50e-21 94.0
MsG0780036987.01.T01 AT3G03660 66.102 59 19 1 41 98 26 84 2.93e-21 94.0
MsG0780036987.01.T01 AT3G03660 66.102 59 19 1 41 98 26 84 4.48e-21 94.0
MsG0780036987.01.T01 AT5G17810 66.667 54 18 0 45 98 19 72 1.05e-20 91.7
MsG0780036987.01.T01 AT5G17810 66.667 54 18 0 45 98 19 72 1.11e-20 91.7
MsG0780036987.01.T01 AT5G17810 66.667 54 18 0 45 98 19 72 1.11e-20 91.7
MsG0780036987.01.T01 AT5G05770 40.000 75 45 0 47 121 29 103 4.09e-15 72.0
MsG0780036987.01.T01 AT3G18010 38.384 99 52 2 47 145 76 165 6.50e-15 75.9
MsG0780036987.01.T01 AT3G11260 45.312 64 35 0 47 110 24 87 2.88e-14 71.2
MsG0780036987.01.T01 AT4G35550 46.032 63 34 0 45 107 97 159 4.61e-14 72.4
MsG0780036987.01.T01 AT2G17950 48.438 64 32 1 47 109 38 101 4.75e-14 72.8
MsG0780036987.01.T01 AT1G46480 46.774 62 33 0 47 108 90 151 1.41e-13 69.3
MsG0780036987.01.T01 AT2G33880 45.714 70 37 1 348 417 320 388 1.83e-13 72.0
MsG0780036987.01.T01 AT1G20700 44.444 63 35 0 45 107 31 93 1.88e-13 68.2
MsG0780036987.01.T01 AT1G20700 44.444 63 35 0 45 107 93 155 3.70e-13 68.6
MsG0780036987.01.T01 AT1G20700 44.444 63 35 0 45 107 93 155 3.83e-13 68.6
MsG0780036987.01.T01 AT1G46480 46.774 62 33 0 47 108 90 151 6.57e-13 68.9
MsG0780036987.01.T01 AT2G33880 47.458 59 31 0 348 406 320 378 2.20e-12 68.6
MsG0780036987.01.T01 AT5G59340 41.935 62 36 0 47 108 14 75 2.40e-12 67.4
MsG0780036987.01.T01 AT2G28610 41.176 68 40 0 41 108 2 69 4.56e-12 66.2
MsG0780036987.01.T01 AT2G01500 39.241 79 40 1 31 101 37 115 9.40e-12 65.5
MsG0780036987.01.T01 AT5G46010 46.154 65 34 1 43 106 50 114 2.23e-11 61.2

Find 109 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATCTTGGCTTTGGTTC+TGG 0.191744 7:-17565067 None:intergenic
CAAGACCCACAACTTAATTT+TGG 0.218741 7:+17565820 MsG0780036987.01.T01:CDS
ATGAACTATGGAAGTGTTAA+TGG 0.219154 7:+17565628 MsG0780036987.01.T01:CDS
CACCATCCCTGTGTTGAAAA+TGG 0.220373 7:-17565122 None:intergenic
GGGTGTGGGTGGTTGTAAAT+TGG 0.233407 7:-17565509 None:intergenic
ATGAACTATGGAAGTGAAAA+TGG 0.255172 7:+17565721 MsG0780036987.01.T01:CDS
CATAGGTTTAATCACTTATC+TGG 0.257497 7:+17565601 MsG0780036987.01.T01:CDS
AAAGGATGCACGAACGTTAA+AGG 0.277456 7:-17566427 None:intergenic
AATAAGCATCAACTTGGTTT+TGG 0.278040 7:-17565468 None:intergenic
ATGCGAATTTGTTGTGGTTT+TGG 0.291711 7:-17565091 None:intergenic
TTATCTGGTTTCATGAACTA+TGG 0.293987 7:+17565616 MsG0780036987.01.T01:CDS
AATTAAGTTGTGGGTCTTGC+TGG 0.313309 7:-17565816 None:intergenic
TTGACGTTGATGATCAATAA+TGG 0.324294 7:-17565935 None:intergenic
TTTGGGTTCCATCTTGGCTT+TGG 0.347448 7:-17565073 None:intergenic
TAAACAAAGCAAATGTTATA+AGG 0.351791 7:-17566564 None:intergenic
TCATCATCGTCATCTTCTTC+TGG 0.355757 7:+17565337 MsG0780036987.01.T01:CDS
CTCAACTCGTCTCTCTTAAC+TGG 0.358193 7:+17564199 MsG0780036987.01.T01:CDS
TTTAACGTTCGTGCATCCTT+TGG 0.359074 7:+17566429 MsG0780036987.01.T01:CDS
CGTGAACAATTACAAGAGTT+TGG 0.359135 7:+17565175 MsG0780036987.01.T01:CDS
CACGAGCTCATCATGAACTA+TGG 0.372037 7:+17565709 MsG0780036987.01.T01:CDS
TGACGTTGATGATCAATAAT+GGG 0.378539 7:-17565934 None:intergenic
ATCTTCGTAATTTCCTCCCT+TGG 0.380246 7:-17565151 None:intergenic
TACTAAGGACGCCTCATTCA+TGG 0.386072 7:+17566392 MsG0780036987.01.T01:CDS
TCCAGTTCTAACCGATGAAT+GGG 0.405372 7:+17566485 MsG0780036987.01.T01:CDS
TGTGGTGTTGTCATGGCATT+AGG 0.415749 7:-17565580 None:intergenic
ACTGTAATTTCTAACAATAT+CGG 0.416634 7:+17565385 MsG0780036987.01.T01:CDS
GGATTCTCCAATGCTAATGA+TGG 0.428470 7:+17565406 MsG0780036987.01.T01:CDS
TCAGGATTTGGCGTGGAAGA+TGG 0.430982 7:+17566348 MsG0780036987.01.T01:intron
ATGGGGAATGGAACAGCAAC+AGG 0.432330 7:-17565916 None:intergenic
CCCCATTCATCGGTTAGAAC+TGG 0.434360 7:-17566486 None:intergenic
GCCTTGAGAATTCCGTTGGT+TGG 0.439358 7:-17564176 None:intergenic
TTCGTAATTTCCTCCCTTGG+TGG 0.441626 7:-17565148 None:intergenic
GTTGTAAATTGGTTTCAGTC+GGG 0.445592 7:-17565498 None:intergenic
CCATGGTGCTACTTATTACC+TGG 0.446959 7:+17566530 MsG0780036987.01.T01:CDS
AAGGATGCACGAACGTTAAA+GGG 0.448612 7:-17566426 None:intergenic
TTAGAAATTACAGTTTCATC+GGG 0.455420 7:-17565376 None:intergenic
CTCCAGTTCTAACCGATGAA+TGG 0.457716 7:+17566484 MsG0780036987.01.T01:CDS
CGCCTCATTCATGGTTGATG+TGG 0.462527 7:+17566401 MsG0780036987.01.T01:CDS
GCAGTTCTCTTTGACTCCTC+TGG 0.463999 7:+17566459 MsG0780036987.01.T01:CDS
GCCTCATTCATGGTTGATGT+GGG 0.464076 7:+17566402 MsG0780036987.01.T01:CDS
CCTCTTCCTCCGACTACCAT+TGG 0.468440 7:+17565889 MsG0780036987.01.T01:CDS
CACCATGGTGGAGCGAATCA+AGG 0.472512 7:-17566515 None:intergenic
GGTTGTAAATTGGTTTCAGT+CGG 0.475867 7:-17565499 None:intergenic
GTTAGAAATTACAGTTTCAT+CGG 0.477841 7:-17565377 None:intergenic
TCGTAATTTCCTCCCTTGGT+GGG 0.478421 7:-17565147 None:intergenic
GAATCTTCTCTTGATCATAT+CGG 0.481992 7:-17565762 None:intergenic
CTCCAGAACCAAAGCCAAGA+TGG 0.487752 7:+17565065 MsG0780036987.01.T01:CDS
GTGTTTCTCGTTTCTTGTTG+TGG 0.496273 7:-17565273 None:intergenic
AATTACAGTTTCATCGGGAG+AGG 0.500855 7:-17565371 None:intergenic
TCATTGATATGATTCTCCAC+AGG 0.502500 7:-17565547 None:intergenic
CCAATGGTAGTCGGAGGAAG+AGG 0.504535 7:-17565889 None:intergenic
ATTCCGTTGGTTGGACGCAT+TGG 0.507387 7:-17564167 None:intergenic
CAACACCAAAATTAAGTTGT+GGG 0.508001 7:-17565825 None:intergenic
AAATATTGTTTAGGTGGAGA+TGG 0.518896 7:+17565031 MsG0780036987.01.T01:intron
CACCATCCCATCATTAGCAT+TGG 0.520729 7:-17565413 None:intergenic
ATCATATCGGTCATCAATTG+AGG 0.527269 7:-17565749 None:intergenic
TTGAAACCAGTAAAAGACAT+TGG 0.529718 7:-17565212 None:intergenic
TGAGGCCTTGAGAATTCCGT+TGG 0.536803 7:-17564180 None:intergenic
AGGTAAGGGTTGAACCATTG+AGG 0.538283 7:-17565656 None:intergenic
TGATGATCAATAATGGGGAA+TGG 0.544295 7:-17565928 None:intergenic
AGAAGATGACGATGATGAGT+TGG 0.545042 7:-17565332 None:intergenic
GAAGATGACGATGATGAGTT+GGG 0.545800 7:-17565331 None:intergenic
GCTAGGCCAATGTTTGTTCG+AGG 0.550853 7:-17564128 None:intergenic
TGTTAATGGAAGCTCCTCAA+TGG 0.556181 7:+17565642 MsG0780036987.01.T01:CDS
TTACAAGAGTTTGGTCAAGT+TGG 0.556243 7:+17565184 MsG0780036987.01.T01:CDS
CATTGATATGATTCTCCACA+GGG 0.560599 7:-17565546 None:intergenic
ACCATGGTGGAGCGAATCAA+GGG 0.565239 7:-17566514 None:intergenic
CCCCACATCAACCATGAATG+AGG 0.565657 7:-17566403 None:intergenic
TCAAGAATGCGAATTTGTTG+TGG 0.566753 7:-17565097 None:intergenic
GTAGACTTCTTGAACATGCT+AGG 0.571860 7:-17564145 None:intergenic
TGGCTTCCTCGAACAAACAT+TGG 0.573120 7:+17564122 MsG0780036987.01.T01:CDS
CGAGAAACACAACAAAACTC+TGG 0.574956 7:+17565286 MsG0780036987.01.T01:CDS
GCAACACCAAAATTAAGTTG+TGG 0.576573 7:-17565826 None:intergenic
AAGGGTAACACCCCATTCAT+CGG 0.584993 7:-17566496 None:intergenic
TTTGTTTGCTTCGAGACTTG+CGG 0.586191 7:-17565237 None:intergenic
AAACCTATGTGGTGTTGTCA+TGG 0.586615 7:-17565587 None:intergenic
TTGTAAATTGGTTTCAGTCG+GGG 0.588784 7:-17565497 None:intergenic
GATTCTCCAATGCTAATGAT+GGG 0.589822 7:+17565407 MsG0780036987.01.T01:CDS
AAAATGTACTGTGATTACTA+AGG 0.592453 7:+17566377 MsG0780036987.01.T01:CDS
CTCCAATGCTAATGATGGGA+TGG 0.594670 7:+17565411 MsG0780036987.01.T01:CDS
AACAGCAACAGGTGCACCAA+TGG 0.597910 7:-17565905 None:intergenic
TTGGTTCACCGAGACTGCGG+GGG 0.602191 7:-17565449 None:intergenic
TCCAACCAACGGAATTCTCA+AGG 0.602756 7:+17564175 MsG0780036987.01.T01:CDS
GAGAACTGCTCGATCTCCAA+AGG 0.604797 7:-17566445 None:intergenic
ATTATTGATCATCAACGTCA+AGG 0.607731 7:+17565937 MsG0780036987.01.T01:CDS
CTACCAATGCGTCCAACCAA+CGG 0.608541 7:+17564164 MsG0780036987.01.T01:CDS
GATAAGTGATTAAACCTATG+TGG 0.608582 7:-17565598 None:intergenic
ACCCTTGATTCGCTCCACCA+TGG 0.609559 7:+17566513 MsG0780036987.01.T01:CDS
TGTGAAAATAAGCATCAACT+TGG 0.611249 7:-17565474 None:intergenic
TTTGGTTCACCGAGACTGCG+GGG 0.623412 7:-17565450 None:intergenic
TGATCAAGAGAAGATTCAAG+AGG 0.626315 7:+17565768 MsG0780036987.01.T01:CDS
CAGTTAAGAGAGACGAGTTG+AGG 0.631435 7:-17564198 None:intergenic
GATGGTGAACCCACCAAGGG+AGG 0.632998 7:+17565138 MsG0780036987.01.T01:CDS
ATGCCATGACAACACCACAT+AGG 0.641572 7:+17565584 MsG0780036987.01.T01:CDS
ACAGGTGCACCAATGGTAGT+CGG 0.643930 7:-17565898 None:intergenic
GACGTTGATGATCAATAATG+GGG 0.644683 7:-17565933 None:intergenic
ATTTGGCGTGGAAGATGGAG+CGG 0.645210 7:+17566353 MsG0780036987.01.T01:CDS
CAGGGATGGTGAACCCACCA+AGG 0.647061 7:+17565134 MsG0780036987.01.T01:CDS
GGTAATAAGTAGCACCATGG+TGG 0.650858 7:-17566527 None:intergenic
CAATGCTAATGATGGGATGG+TGG 0.652306 7:+17565414 MsG0780036987.01.T01:CDS
CCTCATTCATGGTTGATGTG+GGG 0.657797 7:+17566403 MsG0780036987.01.T01:CDS
ATGAGCTCGTGATTAACTAG+AGG 0.662842 7:-17565697 None:intergenic
AGGGATGGTGAACCCACCAA+GGG 0.665906 7:+17565135 MsG0780036987.01.T01:CDS
CCAGTTCTAACCGATGAATG+GGG 0.682383 7:+17566486 MsG0780036987.01.T01:CDS
GGTTAGAACTGGAGTACCAG+AGG 0.692890 7:-17566475 None:intergenic
GTGTTTGTCAGGATTTGGCG+TGG 0.696978 7:+17566341 MsG0780036987.01.T01:intron
CCAGGTAATAAGTAGCACCA+TGG 0.700447 7:-17566530 None:intergenic
GGTGCACCAATGGTAGTCGG+AGG 0.701339 7:-17565895 None:intergenic
GATGACGATGATGAGTTGGG+TGG 0.712576 7:-17565328 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATAATAATAAGTAGA+GGG - Chr7:17564238-17564257 None:intergenic 10.0%
!! TAAATAATAATAATAAGTAG+AGG - Chr7:17564239-17564258 None:intergenic 10.0%
!!! ATGTTTAATAAATTTTTCTA+TGG + Chr7:17564891-17564910 MsG0780036987.01.T01:intron 10.0%
!!! TAATATTTCTATAAAACAAT+TGG - Chr7:17564754-17564773 None:intergenic 10.0%
!!! ATTTGAAAGTTTAGATTTTT+AGG + Chr7:17564469-17564488 MsG0780036987.01.T01:intron 15.0%
!!! TTTGAAAGTTTAGATTTTTA+GGG + Chr7:17564470-17564489 MsG0780036987.01.T01:intron 15.0%
!! ACTGTAATTTCTAACAATAT+CGG + Chr7:17565385-17565404 MsG0780036987.01.T01:CDS 20.0%
!! GAAATATTATAATACTCCAT+AGG + Chr7:17564765-17564784 MsG0780036987.01.T01:intron 20.0%
!! TAAACAAAGCAAATGTTATA+AGG - Chr7:17566567-17566586 None:intergenic 20.0%
!! TTTAACAAATATTGTTTAGG+TGG + Chr7:17565025-17565044 MsG0780036987.01.T01:intron 20.0%
!!! AACTTAATGTGAATTTTAGT+TGG + Chr7:17566041-17566060 MsG0780036987.01.T01:intron 20.0%
!!! AATTTTAAATCGATTCGTTT+AGG - Chr7:17564452-17564471 None:intergenic 20.0%
!!! GCTTTTAACAAATATTGTTT+AGG + Chr7:17565022-17565041 MsG0780036987.01.T01:intron 20.0%
!!! TATAGAAGTATCATAATACT+CGG + Chr7:17564932-17564951 MsG0780036987.01.T01:intron 20.0%
!!! TTGTTTTATTGTATACACTA+CGG + Chr7:17564692-17564711 MsG0780036987.01.T01:intron 20.0%
!!! TTTCGTTTTATTATATTCCA+CGG + Chr7:17566240-17566259 MsG0780036987.01.T01:intron 20.0%
! AAAATGTACTGTGATTACTA+AGG + Chr7:17566377-17566396 MsG0780036987.01.T01:CDS 25.0%
! GCTAAAATTTGATCTATACT+CGG + Chr7:17564492-17564511 MsG0780036987.01.T01:intron 25.0%
! GTTAGAAATTACAGTTTCAT+CGG - Chr7:17565380-17565399 None:intergenic 25.0%
! TAATAAAACGAAATCATACC+CGG - Chr7:17566233-17566252 None:intergenic 25.0%
! TGAAAATATAATTGCTCGAA+CGG - Chr7:17564557-17564576 None:intergenic 25.0%
! TTAGAAATTACAGTTTCATC+GGG - Chr7:17565379-17565398 None:intergenic 25.0%
! TTTGATTAGATCTAACACAT+AGG - Chr7:17564274-17564293 None:intergenic 25.0%
!! TGAGTTTATAGTCATTGATT+TGG - Chr7:17564320-17564339 None:intergenic 25.0%
!!! GTTTAGGTTTTTTCTATGTT+GGG - Chr7:17564436-17564455 None:intergenic 25.0%
!!! TTTAGGTTTTTTCTATGTTG+GGG - Chr7:17564435-17564454 None:intergenic 25.0%
AAATATTGTTTAGGTGGAGA+TGG + Chr7:17565031-17565050 MsG0780036987.01.T01:intron 30.0%
ATGAACTATGGAAGTGAAAA+TGG + Chr7:17565721-17565740 MsG0780036987.01.T01:CDS 30.0%
ATTATTGATCATCAACGTCA+AGG + Chr7:17565937-17565956 MsG0780036987.01.T01:CDS 30.0%
CAAAACGACTTAAATTGATG+TGG + Chr7:17564350-17564369 MsG0780036987.01.T01:intron 30.0%
CATAGGTTTAATCACTTATC+TGG + Chr7:17565601-17565620 MsG0780036987.01.T01:CDS 30.0%
GAATCTTCTCTTGATCATAT+CGG - Chr7:17565765-17565784 None:intergenic 30.0%
GATAAGTGATTAAACCTATG+TGG - Chr7:17565601-17565620 None:intergenic 30.0%
GTAAACTACAATATGACCTA+TGG - Chr7:17564784-17564803 None:intergenic 30.0%
GTAAACTTAGCATGTTTGAT+TGG + Chr7:17565000-17565019 MsG0780036987.01.T01:intron 30.0%
TGTGAAAATAAGCATCAACT+TGG - Chr7:17565477-17565496 None:intergenic 30.0%
TTATCTTCATCTGTTTGCTT+TGG - Chr7:17564726-17564745 None:intergenic 30.0%
TTGAAACCAGTAAAAGACAT+TGG - Chr7:17565215-17565234 None:intergenic 30.0%
! AATAAGCATCAACTTGGTTT+TGG - Chr7:17565471-17565490 None:intergenic 30.0%
! ATACCCGGAACTTTAAATTT+TGG - Chr7:17566218-17566237 None:intergenic 30.0%
! ATCAACATTTTGTTGAGGTA+AGG - Chr7:17565674-17565693 None:intergenic 30.0%
! CAACACCAAAATTAAGTTGT+GGG - Chr7:17565828-17565847 None:intergenic 30.0%
! TACCCGGAACTTTAAATTTT+GGG - Chr7:17566217-17566236 None:intergenic 30.0%
! TCAACATTTTGTTGAGGTAA+GGG - Chr7:17565673-17565692 None:intergenic 30.0%
! TTATCTGGTTTCATGAACTA+TGG + Chr7:17565616-17565635 MsG0780036987.01.T01:CDS 30.0%
! TTTTCTTTTGTGTGTTTGTC+AGG + Chr7:17566330-17566349 MsG0780036987.01.T01:intron 30.0%
!! ATGAACTATGGAAGTGTTAA+TGG + Chr7:17565628-17565647 MsG0780036987.01.T01:CDS 30.0%
!! TGACGTTGATGATCAATAAT+GGG - Chr7:17565937-17565956 None:intergenic 30.0%
!! TTGACGTTGATGATCAATAA+TGG - Chr7:17565938-17565957 None:intergenic 30.0%
!!! CGTTTAGGTTTTTTCTATGT+TGG - Chr7:17564437-17564456 None:intergenic 30.0%
!!! TTTTTGTTGTTTTATCCGTC+TGG - Chr7:17566142-17566161 None:intergenic 30.0%
ATCATATCGGTCATCAATTG+AGG - Chr7:17565752-17565771 None:intergenic 35.0%
CATTGATATGATTCTCCACA+GGG - Chr7:17565549-17565568 None:intergenic 35.0%
CGTGAACAATTACAAGAGTT+TGG + Chr7:17565175-17565194 MsG0780036987.01.T01:CDS 35.0%
GATTCTCCAATGCTAATGAT+GGG + Chr7:17565407-17565426 MsG0780036987.01.T01:CDS 35.0%
TATAAGGAAAAATACGCACC+AGG - Chr7:17566551-17566570 None:intergenic 35.0%
TCATTGATATGATTCTCCAC+AGG - Chr7:17565550-17565569 None:intergenic 35.0%
TGATCAAGAGAAGATTCAAG+AGG + Chr7:17565768-17565787 MsG0780036987.01.T01:CDS 35.0%
TTACAAGAGTTTGGTCAAGT+TGG + Chr7:17565184-17565203 MsG0780036987.01.T01:CDS 35.0%
TTTGTGTGTTTGTCAGGATT+TGG + Chr7:17566336-17566355 MsG0780036987.01.T01:intron 35.0%
! CAAGACCCACAACTTAATTT+TGG + Chr7:17565820-17565839 MsG0780036987.01.T01:CDS 35.0%
! CACCCAAAATTTAAAGTTCC+GGG + Chr7:17566212-17566231 MsG0780036987.01.T01:intron 35.0%
! GCAACACCAAAATTAAGTTG+TGG - Chr7:17565829-17565848 None:intergenic 35.0%
! GCACCCAAAATTTAAAGTTC+CGG + Chr7:17566211-17566230 MsG0780036987.01.T01:intron 35.0%
! GGTACATCAACATTTTGTTG+AGG - Chr7:17565679-17565698 None:intergenic 35.0%
! GGTTGTAAATTGGTTTCAGT+CGG - Chr7:17565502-17565521 None:intergenic 35.0%
! GTTGTAAATTGGTTTCAGTC+GGG - Chr7:17565501-17565520 None:intergenic 35.0%
! TGATGATCAATAATGGGGAA+TGG - Chr7:17565931-17565950 None:intergenic 35.0%
! TTGTAAATTGGTTTCAGTCG+GGG - Chr7:17565500-17565519 None:intergenic 35.0%
!! GACGTTGATGATCAATAATG+GGG - Chr7:17565936-17565955 None:intergenic 35.0%
!! TCAAGAATGCGAATTTGTTG+TGG - Chr7:17565100-17565119 None:intergenic 35.0%
!! TTGAAGCCATTTTCAACACA+GGG + Chr7:17565116-17565135 MsG0780036987.01.T01:CDS 35.0%
!!! ATGCGAATTTGTTGTGGTTT+TGG - Chr7:17565094-17565113 None:intergenic 35.0%
!!! TGATGTGGTTTTTTCCATGT+CGG + Chr7:17564365-17564384 MsG0780036987.01.T01:intron 35.0%
!!! TGCGAATTTGTTGTGGTTTT+GGG - Chr7:17565093-17565112 None:intergenic 35.0%
AAAGGATGCACGAACGTTAA+AGG - Chr7:17566430-17566449 None:intergenic 40.0%
AAGGATGCACGAACGTTAAA+GGG - Chr7:17566429-17566448 None:intergenic 40.0%
AATTACAGTTTCATCGGGAG+AGG - Chr7:17565374-17565393 None:intergenic 40.0%
ACAGGGAAAGAGAAAAATGG+GGG - Chr7:17565532-17565551 None:intergenic 40.0%
AGAAGATGACGATGATGAGT+TGG - Chr7:17565335-17565354 None:intergenic 40.0%
ATCTTCGTAATTTCCTCCCT+TGG - Chr7:17565154-17565173 None:intergenic 40.0%
ATGAGCTCGTGATTAACTAG+AGG - Chr7:17565700-17565719 None:intergenic 40.0%
CACAGGGAAAGAGAAAAATG+GGG - Chr7:17565533-17565552 None:intergenic 40.0%
CCACAGGGAAAGAGAAAAAT+GGG - Chr7:17565534-17565553 None:intergenic 40.0%
CGAGAAACACAACAAAACTC+TGG + Chr7:17565286-17565305 MsG0780036987.01.T01:CDS 40.0%
GAAGATGACGATGATGAGTT+GGG - Chr7:17565334-17565353 None:intergenic 40.0%
GGATTCTCCAATGCTAATGA+TGG + Chr7:17565406-17565425 MsG0780036987.01.T01:CDS 40.0%
GTAGACTTCTTGAACATGCT+AGG - Chr7:17564148-17564167 None:intergenic 40.0%
GTGTTTCTCGTTTCTTGTTG+TGG - Chr7:17565276-17565295 None:intergenic 40.0%
TCATCATCGTCATCTTCTTC+TGG + Chr7:17565337-17565356 MsG0780036987.01.T01:CDS 40.0%
TCCACAGGGAAAGAGAAAAA+TGG - Chr7:17565535-17565554 None:intergenic 40.0%
TGTTAATGGAAGCTCCTCAA+TGG + Chr7:17565642-17565661 MsG0780036987.01.T01:CDS 40.0%
TTCATCTCTCACATGCAACT+TGG - Chr7:17566310-17566329 None:intergenic 40.0%
TTGTTTATATGACCCCGACA+TGG - Chr7:17564382-17564401 None:intergenic 40.0%
TTTAACGTTCGTGCATCCTT+TGG + Chr7:17566429-17566448 MsG0780036987.01.T01:CDS 40.0%
TTTGTTTGCTTCGAGACTTG+CGG - Chr7:17565240-17565259 None:intergenic 40.0%
! AAAGAGAAAAATGGGGGTGT+GGG - Chr7:17565526-17565545 None:intergenic 40.0%
! AATTAAGTTGTGGGTCTTGC+TGG - Chr7:17565819-17565838 None:intergenic 40.0%
! GTGATGCCAATGTCTTTTAC+TGG + Chr7:17565206-17565225 MsG0780036987.01.T01:CDS 40.0%
! TCCAGTTCTAACCGATGAAT+GGG + Chr7:17566485-17566504 MsG0780036987.01.T01:CDS 40.0%
! TTGCGTTTGGCTTAATCAGA+AGG - Chr7:17566095-17566114 None:intergenic 40.0%
!! AAACCTATGTGGTGTTGTCA+TGG - Chr7:17565590-17565609 None:intergenic 40.0%
!! CTTGAAGCCATTTTCAACAC+AGG + Chr7:17565115-17565134 MsG0780036987.01.T01:CDS 40.0%
!!! ATGTGGTTTTTTCCATGTCG+GGG + Chr7:17564367-17564386 MsG0780036987.01.T01:intron 40.0%
!!! GATGTGGTTTTTTCCATGTC+GGG + Chr7:17564366-17564385 MsG0780036987.01.T01:intron 40.0%
AAGGGTAACACCCCATTCAT+CGG - Chr7:17566499-17566518 None:intergenic 45.0%
AGGTAAGGGTTGAACCATTG+AGG - Chr7:17565659-17565678 None:intergenic 45.0%
ATGCCATGACAACACCACAT+AGG + Chr7:17565584-17565603 MsG0780036987.01.T01:CDS 45.0%
CACCATCCCATCATTAGCAT+TGG - Chr7:17565416-17565435 None:intergenic 45.0%
CACCATCCCTGTGTTGAAAA+TGG - Chr7:17565125-17565144 None:intergenic 45.0%
CACGAGCTCATCATGAACTA+TGG + Chr7:17565709-17565728 MsG0780036987.01.T01:CDS 45.0%
CAGTTAAGAGAGACGAGTTG+AGG - Chr7:17564201-17564220 None:intergenic 45.0%
CCAGGTAATAAGTAGCACCA+TGG - Chr7:17566533-17566552 None:intergenic 45.0%
CTCAACTCGTCTCTCTTAAC+TGG + Chr7:17564199-17564218 MsG0780036987.01.T01:CDS 45.0%
GAAAGAGAAAAATGGGGGTG+TGG - Chr7:17565527-17565546 None:intergenic 45.0%
GGTAATAAGTAGCACCATGG+TGG - Chr7:17566530-17566549 None:intergenic 45.0%
TACTAAGGACGCCTCATTCA+TGG + Chr7:17566392-17566411 MsG0780036987.01.T01:CDS 45.0%
TCCAACCAACGGAATTCTCA+AGG + Chr7:17564175-17564194 MsG0780036987.01.T01:CDS 45.0%
TCGTAATTTCCTCCCTTGGT+GGG - Chr7:17565150-17565169 None:intergenic 45.0%
TGGCTTCCTCGAACAAACAT+TGG + Chr7:17564122-17564141 MsG0780036987.01.T01:CDS 45.0%
TTCGTAATTTCCTCCCTTGG+TGG - Chr7:17565151-17565170 None:intergenic 45.0%
! CAATGCTAATGATGGGATGG+TGG + Chr7:17565414-17565433 MsG0780036987.01.T01:CDS 45.0%
! CCAGTTCTAACCGATGAATG+GGG + Chr7:17566486-17566505 MsG0780036987.01.T01:CDS 45.0%
! CCTCATTCATGGTTGATGTG+GGG + Chr7:17566403-17566422 MsG0780036987.01.T01:CDS 45.0%
! CTCCAATGCTAATGATGGGA+TGG + Chr7:17565411-17565430 MsG0780036987.01.T01:CDS 45.0%
! CTCCAGTTCTAACCGATGAA+TGG + Chr7:17566484-17566503 MsG0780036987.01.T01:CDS 45.0%
! GCCTCATTCATGGTTGATGT+GGG + Chr7:17566402-17566421 MsG0780036987.01.T01:CDS 45.0%
! TTTGGGTTCCATCTTGGCTT+TGG - Chr7:17565076-17565095 None:intergenic 45.0%
!! AGCCATTTTCAACACAGGGA+TGG + Chr7:17565120-17565139 MsG0780036987.01.T01:CDS 45.0%
!! CCATGGTGCTACTTATTACC+TGG + Chr7:17566530-17566549 MsG0780036987.01.T01:CDS 45.0%
!! CCCATTTTTCTCTTTCCCTG+TGG + Chr7:17565531-17565550 MsG0780036987.01.T01:CDS 45.0%
!! TCCGTCTGGTTCTCAAAAAG+CGG - Chr7:17566128-17566147 None:intergenic 45.0%
!! TGTGGTGTTGTCATGGCATT+AGG - Chr7:17565583-17565602 None:intergenic 45.0%
!! TTCCATCTTGGCTTTGGTTC+TGG - Chr7:17565070-17565089 None:intergenic 45.0%
!!! CGGCTTGGTAATTTTGCGTT+TGG - Chr7:17566108-17566127 None:intergenic 45.0%
!!! TGTGGTTTTGGGTTCCATCT+TGG - Chr7:17565082-17565101 None:intergenic 45.0%
!!! ATATATATTTGTAATTTTTA+AGG - Chr7:17566191-17566210 None:intergenic 5.0%
!!! TATATATTTGTAATTTTTAA+GGG - Chr7:17566190-17566209 None:intergenic 5.0%
AACAGCAACAGGTGCACCAA+TGG - Chr7:17565908-17565927 None:intergenic 50.0%
ACAGGTGCACCAATGGTAGT+CGG - Chr7:17565901-17565920 None:intergenic 50.0%
ATGGGGAATGGAACAGCAAC+AGG - Chr7:17565919-17565938 None:intergenic 50.0%
ATTTGGCGTGGAAGATGGAG+CGG + Chr7:17566353-17566372 MsG0780036987.01.T01:CDS 50.0%
CCCCACATCAACCATGAATG+AGG - Chr7:17566406-17566425 None:intergenic 50.0%
CTACCAATGCGTCCAACCAA+CGG + Chr7:17564164-17564183 MsG0780036987.01.T01:CDS 50.0%
CTCCAGAACCAAAGCCAAGA+TGG + Chr7:17565065-17565084 MsG0780036987.01.T01:CDS 50.0%
GAGAACTGCTCGATCTCCAA+AGG - Chr7:17566448-17566467 None:intergenic 50.0%
GCAGTTCTCTTTGACTCCTC+TGG + Chr7:17566459-17566478 MsG0780036987.01.T01:CDS 50.0%
GCCTTGAGAATTCCGTTGGT+TGG - Chr7:17564179-17564198 None:intergenic 50.0%
GCTAGGCCAATGTTTGTTCG+AGG - Chr7:17564131-17564150 None:intergenic 50.0%
GGGTGTGGGTGGTTGTAAAT+TGG - Chr7:17565512-17565531 None:intergenic 50.0%
GTGTTTGTCAGGATTTGGCG+TGG + Chr7:17566341-17566360 MsG0780036987.01.T01:intron 50.0%
TCAGGATTTGGCGTGGAAGA+TGG + Chr7:17566348-17566367 MsG0780036987.01.T01:intron 50.0%
TGAGGCCTTGAGAATTCCGT+TGG - Chr7:17564183-17564202 None:intergenic 50.0%
TTCTAATTCCCCCGCAGTCT+CGG + Chr7:17565441-17565460 MsG0780036987.01.T01:CDS 50.0%
! ACCATGGTGGAGCGAATCAA+GGG - Chr7:17566517-17566536 None:intergenic 50.0%
! ATTCCGTTGGTTGGACGCAT+TGG - Chr7:17564170-17564189 None:intergenic 50.0%
! CCCCATTCATCGGTTAGAAC+TGG - Chr7:17566489-17566508 None:intergenic 50.0%
! CGCCTCATTCATGGTTGATG+TGG + Chr7:17566401-17566420 MsG0780036987.01.T01:CDS 50.0%
! CTGGTTCTCAAAAAGCGGCT+TGG - Chr7:17566123-17566142 None:intergenic 50.0%
! GATGACGATGATGAGTTGGG+TGG - Chr7:17565331-17565350 None:intergenic 50.0%
! GGTTAGAACTGGAGTACCAG+AGG - Chr7:17566478-17566497 None:intergenic 50.0%
!!! GCCGCTTTTTGAGAACCAGA+CGG + Chr7:17566124-17566143 MsG0780036987.01.T01:intron 50.0%
!!! GTTTTGGTTCACCGAGACTG+CGG - Chr7:17565455-17565474 None:intergenic 50.0%
!!! TTTTGGTTCACCGAGACTGC+GGG - Chr7:17565454-17565473 None:intergenic 50.0%
AGGGATGGTGAACCCACCAA+GGG + Chr7:17565135-17565154 MsG0780036987.01.T01:CDS 55.0%
CCAATGGTAGTCGGAGGAAG+AGG - Chr7:17565892-17565911 None:intergenic 55.0%
CCTCTTCCTCCGACTACCAT+TGG + Chr7:17565889-17565908 MsG0780036987.01.T01:CDS 55.0%
! ACCCTTGATTCGCTCCACCA+TGG + Chr7:17566513-17566532 MsG0780036987.01.T01:CDS 55.0%
! CACCATGGTGGAGCGAATCA+AGG - Chr7:17566518-17566537 None:intergenic 55.0%
! GAGAAAAATGGGGGTGTGGG+TGG - Chr7:17565523-17565542 None:intergenic 55.0%
! TTTGGTTCACCGAGACTGCG+GGG - Chr7:17565453-17565472 None:intergenic 55.0%
CAGGGATGGTGAACCCACCA+AGG + Chr7:17565134-17565153 MsG0780036987.01.T01:CDS 60.0%
GATGGTGAACCCACCAAGGG+AGG + Chr7:17565138-17565157 MsG0780036987.01.T01:CDS 60.0%
GGTGCACCAATGGTAGTCGG+AGG - Chr7:17565898-17565917 None:intergenic 60.0%
TTGCGCATTGCACACGTCCG+TGG - Chr7:17566260-17566279 None:intergenic 60.0%
TTGGTTCACCGAGACTGCGG+GGG - Chr7:17565452-17565471 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 17564121 17566590 17564121 ID=MsG0780036987.01;Name=MsG0780036987.01
Chr7 mRNA 17564121 17566590 17564121 ID=MsG0780036987.01.T01;Parent=MsG0780036987.01;Name=MsG0780036987.01.T01;_AED=0.39;_eAED=0.41;_QI=0|0|0|1|1|1|3|0|417
Chr7 exon 17564121 17564220 17564121 ID=MsG0780036987.01.T01:exon:3280;Parent=MsG0780036987.01.T01
Chr7 exon 17565044 17565958 17565044 ID=MsG0780036987.01.T01:exon:3281;Parent=MsG0780036987.01.T01
Chr7 exon 17566352 17566590 17566352 ID=MsG0780036987.01.T01:exon:3282;Parent=MsG0780036987.01.T01
Chr7 CDS 17564121 17564220 17564121 ID=MsG0780036987.01.T01:cds;Parent=MsG0780036987.01.T01
Chr7 CDS 17565044 17565958 17565044 ID=MsG0780036987.01.T01:cds;Parent=MsG0780036987.01.T01
Chr7 CDS 17566352 17566590 17566352 ID=MsG0780036987.01.T01:cds;Parent=MsG0780036987.01.T01
Gene Sequence

>MsG0780036987.01.T01

ATGGCTTCCTCGAACAAACATTGGCCTAGCATGTTCAAGAAGTCTACCAATGCGTCCAACCAACGGAATTCTCAAGGCCTCAACTCGTCTCTCTTAACTGGTGGAGATGGTGAAGAGAGAACTCCAGAACCAAAGCCAAGATGGAACCCAAAACCACAACAAATTCGCATTCTTGAAGCCATTTTCAACACAGGGATGGTGAACCCACCAAGGGAGGAAATTACGAAGATACGTGAACAATTACAAGAGTTTGGTCAAGTTGGTGATGCCAATGTCTTTTACTGGTTTCAAAACCGCAAGTCTCGAAGCAAACAAAAGAAGAGATTCATCCACAACAAGAAACGAGAAACACAACAAAACTCTGGTCATCAAACACTCACATCACCACCCAACTCATCATCGTCATCTTCTTCTGGTCATCAAAAAGCCTCTCCCGATGAAACTGTAATTTCTAACAATATCGGATTCTCCAATGCTAATGATGGGATGGTGGTGTTTTCTAATTCCCCCGCAGTCTCGGTGAACCAAAACCAAGTTGATGCTTATTTTCACACCCCGACTGAAACCAATTTACAACCACCCACACCCCCATTTTTCTCTTTCCCTGTGGAGAATCATATCAATGAAGAAGTAGTGCCTAATGCCATGACAACACCACATAGGTTTAATCACTTATCTGGTTTCATGAACTATGGAAGTGTTAATGGAAGCTCCTCAATGGTTCAACCCTTACCTCAACAAAATGTTGATGTACCTCTAGTTAATCACGAGCTCATCATGAACTATGGAAGTGAAAATGGAATCTCCTCAATTGATGACCGATATGATCAAGAGAAGATTCAAGAGGAAGCAATGAATATGATTCACATGTACCAGCAAGACCCACAACTTAATTTTGGTGTTGCTACAACATCAAGTAATGATGATGAGTCAGTTGATCTTGCTCCTCTTCCTCCGACTACCATTGGTGCACCTGTTGCTGTTCCATTCCCCATTATTGATCATCAACGTCAAGGATTTGGCGTGGAAGATGGAGCGGAAAAATGTACTGTGATTACTAAGGACGCCTCATTCATGGTTGATGTGGGGCCCTTTAACGTTCGTGCATCCTTTGGAGATCGAGCAGTTCTCTTTGACTCCTCTGGTACTCCAGTTCTAACCGATGAATGGGGTGTTACCCTTGATTCGCTCCACCATGGTGCTACTTATTACCTGGTGCGTATTTTTCCTTATAACATTTGCTTTGTTTATTAA
Protein sequence

>MsG0780036987.01.T01

MASSNKHWPSMFKKSTNASNQRNSQGLNSSLLTGGDGEERTPEPKPRWNPKPQQIRILEAIFNTGMVNPPREEITKIREQLQEFGQVGDANVFYWFQNRKSRSKQKKRFIHNKKRETQQNSGHQTLTSPPNSSSSSSSGHQKASPDETVISNNIGFSNANDGMVVFSNSPAVSVNQNQVDAYFHTPTETNLQPPTPPFFSFPVENHINEEVVPNAMTTPHRFNHLSGFMNYGSVNGSSSMVQPLPQQNVDVPLVNHELIMNYGSENGISSIDDRYDQEKIQEEAMNMIHMYQQDPQLNFGVATTSSNDDESVDLAPLPPTTIGAPVAVPFPIIDHQRQGFGVEDGAEKCTVITKDASFMVDVGPFNVRASFGDRAVLFDSSGTPVLTDEWGVTLDSLHHGATYYLVRIFPYNICFVY*