Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037652.01.T01 | XP_024630890.1 | 76.753 | 271 | 56 | 1 | 49 | 312 | 28 | 298 | 3.52E-141 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037652.01.T01 | A2Q1D6 | 72.945 | 292 | 55 | 3 | 21 | 312 | 8 | 275 | 3.00e-136 | 409 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0780037652.01.T01 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037652.01.T01 | MTR_1g099140 | 70.707 | 297 | 64 | 2 | 21 | 294 | 8 | 304 | 2.51e-138 | 402 |
| MsG0780037652.01.T01 | MTR_2g090505 | 69.388 | 294 | 67 | 2 | 21 | 291 | 8 | 301 | 1.50e-135 | 387 |
| MsG0780037652.01.T01 | MTR_5g032220 | 72.222 | 270 | 52 | 2 | 50 | 312 | 41 | 294 | 2.36e-122 | 360 |
| MsG0780037652.01.T01 | MTR_3g116710 | 70.815 | 233 | 43 | 2 | 21 | 228 | 1 | 233 | 1.50e-101 | 298 |
| MsG0780037652.01.T01 | MTR_5g046145 | 63.677 | 223 | 49 | 3 | 22 | 221 | 45 | 258 | 2.24e-82 | 254 |
| MsG0780037652.01.T01 | MTR_0528s0010 | 71.642 | 134 | 38 | 0 | 130 | 263 | 1 | 134 | 9.58e-68 | 208 |
| MsG0780037652.01.T01 | MTR_5g073000 | 41.100 | 309 | 97 | 6 | 17 | 312 | 15 | 251 | 7.73e-63 | 209 |
| MsG0780037652.01.T01 | MTR_5g072970 | 60.127 | 158 | 41 | 1 | 155 | 312 | 33 | 168 | 2.77e-59 | 192 |
| MsG0780037652.01.T01 | MTR_2g067620 | 55.975 | 159 | 52 | 1 | 124 | 282 | 1 | 141 | 8.97e-52 | 183 |
| MsG0780037652.01.T01 | MTR_4g119600 | 32.867 | 286 | 171 | 5 | 39 | 312 | 20 | 296 | 9.56e-46 | 158 |
| MsG0780037652.01.T01 | MTR_1g012760 | 41.146 | 192 | 101 | 3 | 68 | 259 | 30 | 209 | 1.36e-40 | 143 |
| MsG0780037652.01.T01 | MTR_1g012760 | 41.146 | 192 | 101 | 3 | 68 | 259 | 41 | 220 | 1.79e-40 | 143 |
| MsG0780037652.01.T01 | MTR_2g023130 | 32.463 | 268 | 129 | 4 | 46 | 312 | 4 | 220 | 1.86e-39 | 139 |
| MsG0780037652.01.T01 | MTR_4g057300 | 36.316 | 190 | 120 | 1 | 124 | 312 | 4 | 193 | 9.40e-39 | 140 |
| MsG0780037652.01.T01 | MTR_7g056020 | 33.333 | 243 | 136 | 2 | 72 | 312 | 382 | 600 | 6.81e-38 | 142 |
| MsG0780037652.01.T01 | MTR_7g065910 | 37.436 | 195 | 110 | 3 | 121 | 312 | 33 | 218 | 2.00e-34 | 129 |
| MsG0780037652.01.T01 | MTR_8g103800 | 28.519 | 270 | 164 | 3 | 44 | 312 | 25 | 266 | 8.92e-34 | 125 |
| MsG0780037652.01.T01 | MTR_8g107490 | 29.218 | 243 | 145 | 4 | 75 | 312 | 41 | 261 | 1.96e-31 | 119 |
| MsG0780037652.01.T01 | MTR_6g026910 | 34.211 | 190 | 90 | 3 | 123 | 312 | 59 | 213 | 3.87e-31 | 117 |
| MsG0780037652.01.T01 | MTR_1g052890 | 36.242 | 149 | 95 | 0 | 164 | 312 | 12 | 160 | 3.69e-30 | 116 |
| MsG0780037652.01.T01 | MTR_8g020433 | 31.937 | 191 | 126 | 2 | 123 | 312 | 57 | 244 | 3.90e-30 | 119 |
| MsG0780037652.01.T01 | MTR_6g029530 | 37.989 | 179 | 105 | 3 | 67 | 240 | 492 | 669 | 7.69e-29 | 117 |
| MsG0780037652.01.T01 | MTR_5g006100 | 29.114 | 237 | 161 | 3 | 57 | 290 | 38 | 270 | 4.06e-28 | 114 |
| MsG0780037652.01.T01 | MTR_0156s0040 | 33.333 | 189 | 116 | 3 | 122 | 307 | 2 | 183 | 6.58e-28 | 107 |
| MsG0780037652.01.T01 | MTR_5g046160 | 30.374 | 214 | 129 | 4 | 88 | 300 | 55 | 249 | 9.17e-28 | 108 |
| MsG0780037652.01.T01 | MTR_3g077875 | 31.280 | 211 | 135 | 5 | 61 | 265 | 63 | 269 | 2.28e-27 | 108 |
| MsG0780037652.01.T01 | MTR_3g072200 | 36.601 | 153 | 93 | 2 | 88 | 239 | 60 | 209 | 6.54e-27 | 110 |
| MsG0780037652.01.T01 | MTR_8g028020 | 38.462 | 130 | 80 | 0 | 171 | 300 | 3 | 132 | 4.12e-24 | 95.9 |
| MsG0780037652.01.T01 | MTR_2g096070 | 28.632 | 234 | 120 | 4 | 79 | 312 | 84 | 270 | 4.71e-24 | 103 |
| MsG0780037652.01.T01 | MTR_3g462670 | 32.370 | 173 | 108 | 3 | 121 | 292 | 60 | 224 | 5.27e-24 | 98.2 |
| MsG0780037652.01.T01 | MTR_4g120790 | 29.183 | 257 | 131 | 8 | 25 | 265 | 2 | 223 | 3.32e-23 | 95.9 |
| MsG0780037652.01.T01 | MTR_4g132765 | 37.410 | 139 | 75 | 1 | 174 | 312 | 306 | 432 | 4.57e-23 | 100 |
| MsG0780037652.01.T01 | MTR_3g015530 | 27.197 | 239 | 119 | 4 | 73 | 310 | 49 | 233 | 1.64e-22 | 94.7 |
| MsG0780037652.01.T01 | MTR_6g464570 | 35.664 | 143 | 89 | 2 | 62 | 202 | 3 | 144 | 2.19e-22 | 92.0 |
| MsG0780037652.01.T01 | MTR_0632s0010 | 37.097 | 124 | 78 | 0 | 182 | 305 | 9 | 132 | 4.42e-22 | 90.1 |
| MsG0780037652.01.T01 | MTR_6g075990 | 29.464 | 224 | 133 | 6 | 25 | 232 | 20 | 234 | 2.05e-21 | 92.0 |
| MsG0780037652.01.T01 | MTR_8g037210 | 34.043 | 141 | 73 | 1 | 172 | 312 | 4 | 124 | 3.07e-21 | 91.3 |
| MsG0780037652.01.T01 | MTR_5g018790 | 34.074 | 135 | 89 | 0 | 178 | 312 | 1 | 135 | 1.86e-20 | 92.4 |
| MsG0780037652.01.T01 | MTR_2g026585 | 26.271 | 236 | 132 | 6 | 30 | 256 | 12 | 214 | 4.79e-20 | 90.1 |
| MsG0780037652.01.T01 | MTR_3g034840 | 31.156 | 199 | 123 | 6 | 26 | 218 | 22 | 212 | 1.64e-19 | 85.9 |
| MsG0780037652.01.T01 | MTR_0599s0020 | 31.156 | 199 | 123 | 6 | 26 | 218 | 22 | 212 | 1.64e-19 | 85.9 |
| MsG0780037652.01.T01 | MTR_1g081740 | 28.910 | 211 | 109 | 5 | 30 | 232 | 12 | 189 | 1.08e-18 | 82.8 |
| MsG0780037652.01.T01 | MTR_4g100470 | 35.433 | 127 | 80 | 1 | 141 | 265 | 64 | 190 | 6.02e-18 | 80.9 |
| MsG0780037652.01.T01 | MTR_1g058140 | 36.290 | 124 | 77 | 2 | 133 | 254 | 85 | 208 | 7.88e-18 | 81.6 |
| MsG0780037652.01.T01 | MTR_7g050385 | 35.897 | 117 | 71 | 2 | 73 | 188 | 114 | 227 | 2.37e-17 | 80.1 |
| MsG0780037652.01.T01 | MTR_5g031650 | 25.571 | 219 | 145 | 5 | 10 | 219 | 16 | 225 | 8.57e-17 | 78.6 |
| MsG0780037652.01.T01 | MTR_6g042630 | 44.318 | 88 | 30 | 2 | 225 | 312 | 2 | 70 | 1.51e-15 | 70.9 |
| MsG0780037652.01.T01 | MTR_2g105460 | 43.662 | 71 | 40 | 0 | 242 | 312 | 140 | 210 | 1.53e-15 | 77.4 |
| MsG0780037652.01.T01 | MTR_2g461140 | 27.053 | 207 | 111 | 6 | 44 | 241 | 7 | 182 | 2.29e-15 | 73.6 |
| MsG0780037652.01.T01 | MTR_0102s0050 | 50.000 | 64 | 32 | 0 | 214 | 277 | 54 | 117 | 1.01e-14 | 69.7 |
| MsG0780037652.01.T01 | MTR_5g072950 | 56.061 | 66 | 26 | 1 | 247 | 312 | 92 | 154 | 1.67e-14 | 73.2 |
| MsG0780037652.01.T01 | MTR_3g087440 | 32.624 | 141 | 88 | 3 | 79 | 216 | 84 | 220 | 2.78e-14 | 71.6 |
| MsG0780037652.01.T01 | MTR_1g043440 | 37.895 | 95 | 59 | 0 | 164 | 258 | 175 | 269 | 4.64e-14 | 72.0 |
| MsG0780037652.01.T01 | MTR_2g067930 | 33.065 | 124 | 82 | 1 | 118 | 240 | 70 | 193 | 5.16e-14 | 70.1 |
| MsG0780037652.01.T01 | MTR_4g057975 | 28.736 | 174 | 113 | 5 | 49 | 216 | 26 | 194 | 9.52e-14 | 69.3 |
| MsG0780037652.01.T01 | MTR_4g051638 | 30.065 | 153 | 96 | 4 | 47 | 191 | 90 | 239 | 2.34e-13 | 68.9 |
| MsG0780037652.01.T01 | MTR_3g067290 | 27.313 | 227 | 134 | 6 | 11 | 232 | 18 | 218 | 2.65e-13 | 68.6 |
| MsG0780037652.01.T01 | MTR_1g071020 | 48.333 | 60 | 31 | 0 | 240 | 299 | 49 | 108 | 2.65e-13 | 67.4 |
| MsG0780037652.01.T01 | MTR_8g445570 | 35.294 | 102 | 64 | 2 | 148 | 248 | 10 | 110 | 4.91e-13 | 65.1 |
| MsG0780037652.01.T01 | MTR_3g030230 | 33.654 | 104 | 68 | 1 | 119 | 221 | 69 | 172 | 8.26e-13 | 66.2 |
| MsG0780037652.01.T01 | MTR_3g437000 | 30.000 | 130 | 79 | 3 | 31 | 160 | 8 | 125 | 1.07e-12 | 64.7 |
| MsG0780037652.01.T01 | MTR_1g059880 | 34.737 | 95 | 58 | 2 | 88 | 181 | 86 | 177 | 1.23e-12 | 66.2 |
| MsG0780037652.01.T01 | MTR_4g113170 | 34.831 | 89 | 57 | 1 | 154 | 241 | 74 | 162 | 1.23e-12 | 68.9 |
| MsG0780037652.01.T01 | MTR_7g106560 | 33.010 | 103 | 68 | 1 | 154 | 255 | 93 | 195 | 2.00e-12 | 65.5 |
| MsG0780037652.01.T01 | MTR_8g009330 | 31.967 | 122 | 70 | 3 | 79 | 195 | 87 | 200 | 3.30e-12 | 65.5 |
| MsG0780037652.01.T01 | MTR_2g027000 | 35.185 | 108 | 63 | 1 | 141 | 241 | 70 | 177 | 9.78e-12 | 63.2 |
| MsG0780037652.01.T01 | MTR_5g046245 | 32.432 | 111 | 74 | 1 | 153 | 262 | 6 | 116 | 2.09e-11 | 63.2 |
| MsG0780037652.01.T01 | MTR_4g033320 | 35.065 | 77 | 50 | 0 | 236 | 312 | 16 | 92 | 3.24e-11 | 60.8 |
| MsG0780037652.01.T01 | MTR_8g016360 | 33.333 | 123 | 81 | 1 | 63 | 185 | 7 | 128 | 7.46e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAATAACTTGATAAAATT+TGG | 0.155892 | 7:+30347531 | None:intergenic |
| ATGATACTTGTTGGTCTTAT+AGG | 0.168495 | 7:+30347476 | None:intergenic |
| TCTTCTATTGCCACCGTTAT+CGG | 0.229295 | 7:+30348040 | None:intergenic |
| TCTCAGGTGGATCATCAATT+AGG | 0.230700 | 7:+30348348 | None:intergenic |
| GCAACATATCTTGAAGTCTT+TGG | 0.277070 | 7:-30347628 | MsG0780037652.01.T01:CDS |
| CCGAAAATTGAAATATCTTT+AGG | 0.292931 | 7:-30348227 | MsG0780037652.01.T01:CDS |
| TGAAGGTGCACACATTCATT+TGG | 0.322924 | 7:+30347795 | None:intergenic |
| TCTTCCATTGCTTGATTTGT+CGG | 0.338965 | 7:-30347454 | MsG0780037652.01.T01:CDS |
| GGCAAATGCTTACCAACTTA+TGG | 0.346309 | 7:-30347743 | MsG0780037652.01.T01:CDS |
| ACTTGTTGACTGTTGGTGAT+TGG | 0.355994 | 7:-30347899 | MsG0780037652.01.T01:CDS |
| TTAACTACCGTTGAGAAATC+TGG | 0.365865 | 7:+30349147 | None:intergenic |
| GTCCGTCCTCGTACTCCTAA+TGG | 0.377451 | 7:+30347653 | None:intergenic |
| CTCAGGTGGATCATCAATTA+GGG | 0.383536 | 7:+30348349 | None:intergenic |
| GAAGGTGCACACATTCATTT+GGG | 0.396270 | 7:+30347796 | None:intergenic |
| ATACAAACAGCAGGAGGAAT+AGG | 0.398438 | 7:+30348176 | None:intergenic |
| GTCTACCATCACCAACTTTG+AGG | 0.424441 | 7:+30347874 | None:intergenic |
| ATGATTACATGTATCATTGT+AGG | 0.427007 | 7:-30347599 | MsG0780037652.01.T01:CDS |
| TTAAATGCGAGTGTCAGTTT+CGG | 0.452552 | 7:-30347932 | MsG0780037652.01.T01:CDS |
| ACAGGTATAAGCGGTCCATT+AGG | 0.461517 | 7:-30347668 | MsG0780037652.01.T01:CDS |
| TGTTACTTTGATATGTGAAA+GGG | 0.471195 | 7:-30348009 | MsG0780037652.01.T01:CDS |
| TACAATGATACATGTAATCA+TGG | 0.475845 | 7:+30347601 | None:intergenic |
| AAGACTTTGCGCGAGATAGC+TGG | 0.489787 | 7:-30347960 | MsG0780037652.01.T01:CDS |
| CAATGGAAGATGATACTTGT+TGG | 0.490684 | 7:+30347467 | None:intergenic |
| GGACTAGGAGGTTCAATCTC+AGG | 0.491843 | 7:+30348332 | None:intergenic |
| ACGGTTCCTCTTCCATAAGT+TGG | 0.493548 | 7:+30347731 | None:intergenic |
| TGCAACACGGAATGATTTGT+TGG | 0.493878 | 7:-30348117 | MsG0780037652.01.T01:CDS |
| TCATCAATTAGGGCATCAAC+GGG | 0.497323 | 7:+30348359 | None:intergenic |
| AGAGGTTACTTGTTGACTGT+TGG | 0.498286 | 7:-30347906 | MsG0780037652.01.T01:CDS |
| TTGTTACTTTGATATGTGAA+AGG | 0.502488 | 7:-30348010 | MsG0780037652.01.T01:CDS |
| CACGGAATGATTTGTTGGAG+TGG | 0.511090 | 7:-30348112 | MsG0780037652.01.T01:CDS |
| TGGAAGCAGTTAACTGCTGC+TGG | 0.518268 | 7:+30349167 | None:intergenic |
| GTTATTTAACACATTCTCTA+CGG | 0.523261 | 7:-30347517 | MsG0780037652.01.T01:CDS |
| ATCATCAATTAGGGCATCAA+CGG | 0.523700 | 7:+30348358 | None:intergenic |
| AGTGGGTTCGAGAGAAAGCT+AGG | 0.526203 | 7:-30348094 | MsG0780037652.01.T01:CDS |
| ACGGAATGATTTGTTGGAGT+GGG | 0.526599 | 7:-30348111 | MsG0780037652.01.T01:CDS |
| CACTGGCATCATCAGAATCA+TGG | 0.538806 | 7:+30347571 | None:intergenic |
| TGCTTACCAACTTATGGAAG+AGG | 0.546225 | 7:-30347737 | MsG0780037652.01.T01:CDS |
| CGAGAGAAAGCTAGGAAGCT+CGG | 0.549712 | 7:-30348086 | MsG0780037652.01.T01:CDS |
| CGCTGATCAATACAAACAGC+AGG | 0.550466 | 7:+30348167 | None:intergenic |
| CAAACAGCAGGAGGAATAGG+AGG | 0.557423 | 7:+30348179 | None:intergenic |
| TTAACTGCTGCTGGTGCCAG+CGG | 0.557991 | 7:+30349176 | None:intergenic |
| TCAACACATCTGTCATGTCA+TGG | 0.562492 | 7:+30347847 | None:intergenic |
| GTTACTTTGATATGTGAAAG+GGG | 0.563272 | 7:-30348008 | MsG0780037652.01.T01:CDS |
| GTGTTTGATAGTAGTTGAAG+TGG | 0.573488 | 7:+30347707 | None:intergenic |
| GCTATTGGTAAATCCGATAA+CGG | 0.580974 | 7:-30348053 | MsG0780037652.01.T01:CDS |
| ATCGGATTTACCAATAGCAG+TGG | 0.589091 | 7:+30348058 | None:intergenic |
| TGATAGTAGTTGAAGTGGCA+CGG | 0.590554 | 7:+30347712 | None:intergenic |
| CAATGGCAGTTAACTACCGC+TGG | 0.599645 | 7:-30349192 | MsG0780037652.01.T01:CDS |
| GGTGATTGGAGCCTCAAAGT+TGG | 0.601143 | 7:-30347885 | MsG0780037652.01.T01:CDS |
| ACGTTTATAATGCATGTCAC+AGG | 0.612976 | 7:-30347686 | MsG0780037652.01.T01:CDS |
| TTGAATCCACCATCTCATGA+AGG | 0.618789 | 7:+30347778 | None:intergenic |
| TTGGTAAGCATTTGCCTCGG+AGG | 0.620515 | 7:+30347750 | None:intergenic |
| GTCCATTAGGAGTACGAGGA+CGG | 0.621277 | 7:-30347655 | MsG0780037652.01.T01:CDS |
| CTAGGAGGTTCAATCTCAGG+TGG | 0.623702 | 7:+30348335 | None:intergenic |
| TTTAGGCGATGCAAAAGTAG+AGG | 0.630664 | 7:-30348210 | MsG0780037652.01.T01:CDS |
| AAGTTGGTAAGCATTTGCCT+CGG | 0.644218 | 7:+30347747 | None:intergenic |
| GTTACCGACAAATCAAGCAA+TGG | 0.651590 | 7:+30347450 | None:intergenic |
| ATGCATGTCACAGGTATAAG+CGG | 0.658187 | 7:-30347677 | MsG0780037652.01.T01:CDS |
| TGGAGCCTCAAAGTTGGTGA+TGG | 0.660067 | 7:-30347879 | MsG0780037652.01.T01:CDS |
| ATGTGTGCACCTTCATGAGA+TGG | 0.663620 | 7:-30347787 | MsG0780037652.01.T01:CDS |
| ACCGGCAACACAATAGGACT+AGG | 0.666867 | 7:+30348317 | None:intergenic |
| TGATCAATACAAACAGCAGG+AGG | 0.671487 | 7:+30348170 | None:intergenic |
| ACTGCTTCCAGATTTCTCAA+CGG | 0.673308 | 7:-30349154 | MsG0780037652.01.T01:intron |
| TGTGCACCTTCATGAGATGG+TGG | 0.676288 | 7:-30347784 | MsG0780037652.01.T01:CDS |
| GAGTGTCAGTTTCGGCTGAG+AGG | 0.679464 | 7:-30347924 | MsG0780037652.01.T01:CDS |
| GACATGACAGATGTGTTGAA+AGG | 0.687656 | 7:-30347843 | MsG0780037652.01.T01:CDS |
| GGCAACACAATAGGACTAGG+AGG | 0.692267 | 7:+30348320 | None:intergenic |
| CTACACAAAAGTTTGCAACA+CGG | 0.702429 | 7:-30348130 | MsG0780037652.01.T01:CDS |
| ACTTTGATATGTGAAAGGGG+AGG | 0.702845 | 7:-30348005 | MsG0780037652.01.T01:CDS |
| AGCGGTCCATTAGGAGTACG+AGG | 0.714772 | 7:-30347659 | MsG0780037652.01.T01:CDS |
| TGGATTCAAACGTTCCTCCG+AGG | 0.717381 | 7:-30347764 | MsG0780037652.01.T01:CDS |
| ATTGGTAAATCCGATAACGG+TGG | 0.729012 | 7:-30348050 | MsG0780037652.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAACTTGATAAAATT+TGG | + | Chr7:30349099-30349118 | None:intergenic | 10.0% |
| !!! | CCTAAAGATATTTCAATTTT+CGG | + | Chr7:30348403-30348422 | None:intergenic | 20.0% |
| ! | AAGTTTCAGAAATTATAGTC+TGG | - | Chr7:30347777-30347796 | MsG0780037652.01.T01:CDS | 25.0% |
| ! | ATGATTACATGTATCATTGT+AGG | - | Chr7:30349028-30349047 | MsG0780037652.01.T01:intron | 25.0% |
| ! | CCGAAAATTGAAATATCTTT+AGG | - | Chr7:30348400-30348419 | MsG0780037652.01.T01:intron | 25.0% |
| ! | GATTATATAATCCGAACAAA+GGG | + | Chr7:30347666-30347685 | None:intergenic | 25.0% |
| ! | GTTATTTAACACATTCTCTA+CGG | - | Chr7:30349110-30349129 | MsG0780037652.01.T01:intron | 25.0% |
| ! | TACAATGATACATGTAATCA+TGG | + | Chr7:30349029-30349048 | None:intergenic | 25.0% |
| ! | TATATAATCCGGACAATATT+AGG | - | Chr7:30347677-30347696 | MsG0780037652.01.T01:CDS | 25.0% |
| ! | TATGTAATCCTAATATTGTC+CGG | + | Chr7:30347688-30347707 | None:intergenic | 25.0% |
| ! | TCATTCCGAAAAATAAAATC+CGG | - | Chr7:30348143-30348162 | MsG0780037652.01.T01:CDS | 25.0% |
| ! | TGGACAATATAATTGAATTC+CGG | - | Chr7:30347797-30347816 | MsG0780037652.01.T01:CDS | 25.0% |
| ! | TTTGTTCGGATTATATAATC+CGG | - | Chr7:30347666-30347685 | MsG0780037652.01.T01:CDS | 25.0% |
| !! | AAAGATATTTCAATTTTCGG+TGG | + | Chr7:30348400-30348419 | None:intergenic | 25.0% |
| !!! | AAAATAGTCGGTTTTTTTTC+CGG | - | Chr7:30347860-30347879 | MsG0780037652.01.T01:CDS | 25.0% |
| !!! | TGTTACTTTGATATGTGAAA+GGG | - | Chr7:30348618-30348637 | MsG0780037652.01.T01:intron | 25.0% |
| !!! | TTGTTACTTTGATATGTGAA+AGG | - | Chr7:30348617-30348636 | MsG0780037652.01.T01:intron | 25.0% |
| ACATCTTCAAGTAAAAGAAC+CGG | + | Chr7:30348331-30348350 | None:intergenic | 30.0% | |
| CTAAAAACACACACCATTTA+AGG | - | Chr7:30347971-30347990 | MsG0780037652.01.T01:CDS | 30.0% | |
| GGATTATATAATCCGAACAA+AGG | + | Chr7:30347667-30347686 | None:intergenic | 30.0% | |
| TGACTAAAATACCCTTTGTT+CGG | - | Chr7:30347652-30347671 | MsG0780037652.01.T01:CDS | 30.0% | |
| ! | AACCATATTTTCGCCTTAAA+TGG | + | Chr7:30347987-30348006 | None:intergenic | 30.0% |
| ! | GTTACTTTGATATGTGAAAG+GGG | - | Chr7:30348619-30348638 | MsG0780037652.01.T01:intron | 30.0% |
| ! | TTTAAGGCGAAAATATGGTT+TGG | - | Chr7:30347987-30348006 | MsG0780037652.01.T01:CDS | 30.0% |
| ! | TTTCACACTGTTTTCAGTTA+TGG | - | Chr7:30348240-30348259 | MsG0780037652.01.T01:CDS | 30.0% |
| ! | TTTTTCCGGAAAACAAAATC+CGG | - | Chr7:30347874-30347893 | MsG0780037652.01.T01:CDS | 30.0% |
| !! | ATGATACTTGTTGGTCTTAT+AGG | + | Chr7:30349154-30349173 | None:intergenic | 30.0% |
| !!! | GTATTTTAGTCAAAAACGCA+GGG | + | Chr7:30347644-30347663 | None:intergenic | 30.0% |
| !!! | TAAATGGTGTGTGTTTTTAG+AGG | + | Chr7:30347971-30347990 | None:intergenic | 30.0% |
| AACTGAGCAGGAAAAATAGT+CGG | - | Chr7:30347848-30347867 | MsG0780037652.01.T01:CDS | 35.0% | |
| AAGCGCCTAAAAATCGAATA+GGG | + | Chr7:30348090-30348109 | None:intergenic | 35.0% | |
| AATGAACACAGTTTCTGTAC+TGG | + | Chr7:30348209-30348228 | None:intergenic | 35.0% | |
| ACGTTTATAATGCATGTCAC+AGG | - | Chr7:30348941-30348960 | MsG0780037652.01.T01:intron | 35.0% | |
| ATTCTCAGATTAGGCATTTC+CGG | + | Chr7:30348362-30348381 | None:intergenic | 35.0% | |
| CAATGGAAGATGATACTTGT+TGG | + | Chr7:30349163-30349182 | None:intergenic | 35.0% | |
| CTACACAAAAGTTTGCAACA+CGG | - | Chr7:30348497-30348516 | MsG0780037652.01.T01:intron | 35.0% | |
| GATCATATGACGTGATCAAA+AGG | + | Chr7:30348114-30348133 | None:intergenic | 35.0% | |
| GCAACATATCTTGAAGTCTT+TGG | - | Chr7:30348999-30349018 | MsG0780037652.01.T01:intron | 35.0% | |
| GCTATTGGTAAATCCGATAA+CGG | - | Chr7:30348574-30348593 | MsG0780037652.01.T01:intron | 35.0% | |
| TCCAAGTTTCACAAATGACA+TGG | + | Chr7:30347740-30347759 | None:intergenic | 35.0% | |
| TTAAATGCGAGTGTCAGTTT+CGG | - | Chr7:30348695-30348714 | MsG0780037652.01.T01:intron | 35.0% | |
| TTAACTACCGTTGAGAAATC+TGG | + | Chr7:30347483-30347502 | None:intergenic | 35.0% | |
| ! | AAAGCGCCTAAAAATCGAAT+AGG | + | Chr7:30348091-30348110 | None:intergenic | 35.0% |
| ! | ACCATGTCATTTGTGAAACT+TGG | - | Chr7:30347736-30347755 | MsG0780037652.01.T01:CDS | 35.0% |
| ! | ATCATCAATTAGGGCATCAA+CGG | + | Chr7:30348272-30348291 | None:intergenic | 35.0% |
| ! | CACCATTTAAGGCGAAAATA+TGG | - | Chr7:30347982-30348001 | MsG0780037652.01.T01:CDS | 35.0% |
| ! | GATATTTCAATTTTCGGTGG+TGG | + | Chr7:30348397-30348416 | None:intergenic | 35.0% |
| ! | GTGTTTGATAGTAGTTGAAG+TGG | + | Chr7:30348923-30348942 | None:intergenic | 35.0% |
| ! | TCATTTTCGTCTGAATGCAA+AGG | - | Chr7:30348045-30348064 | MsG0780037652.01.T01:CDS | 35.0% |
| ! | TGTTGCAAACTTTTGTGTAG+TGG | + | Chr7:30348497-30348516 | None:intergenic | 35.0% |
| !! | TCTTCCATTGCTTGATTTGT+CGG | - | Chr7:30349173-30349192 | MsG0780037652.01.T01:CDS | 35.0% |
| !!! | ATGATGCCAGTGATGTTTTT+TGG | - | Chr7:30349067-30349086 | MsG0780037652.01.T01:intron | 35.0% |
| !!! | GCAGTCCGGATTTTATTTTT+CGG | + | Chr7:30348151-30348170 | None:intergenic | 35.0% |
| !!! | GGTATTTTAGTCAAAAACGC+AGG | + | Chr7:30347645-30347664 | None:intergenic | 35.0% |
| !!! | TGATGCCAGTGATGTTTTTT+GGG | - | Chr7:30349068-30349087 | MsG0780037652.01.T01:intron | 35.0% |
| AAAAGAACCGGCAACACAAT+AGG | + | Chr7:30348319-30348338 | None:intergenic | 40.0% | |
| ACTGCTTCCAGATTTCTCAA+CGG | - | Chr7:30347473-30347492 | MsG0780037652.01.T01:CDS | 40.0% | |
| ACTTTGATATGTGAAAGGGG+AGG | - | Chr7:30348622-30348641 | MsG0780037652.01.T01:intron | 40.0% | |
| AGCGCCTAAAAATCGAATAG+GGG | + | Chr7:30348089-30348108 | None:intergenic | 40.0% | |
| ATACAAACAGCAGGAGGAAT+AGG | + | Chr7:30348454-30348473 | None:intergenic | 40.0% | |
| ATCGGATTTACCAATAGCAG+TGG | + | Chr7:30348572-30348591 | None:intergenic | 40.0% | |
| ATGCATGTCACAGGTATAAG+CGG | - | Chr7:30348950-30348969 | MsG0780037652.01.T01:intron | 40.0% | |
| ATGTGCCCAAAAAACATCAC+TGG | + | Chr7:30349076-30349095 | None:intergenic | 40.0% | |
| CCTAAAAATCGAATAGGGGA+AGG | + | Chr7:30348085-30348104 | None:intergenic | 40.0% | |
| CTCAGGTGGATCATCAATTA+GGG | + | Chr7:30348281-30348300 | None:intergenic | 40.0% | |
| CTTGAAGATGTGCATGATTC+CGG | - | Chr7:30348340-30348359 | MsG0780037652.01.T01:CDS | 40.0% | |
| GACATGACAGATGTGTTGAA+AGG | - | Chr7:30348784-30348803 | MsG0780037652.01.T01:intron | 40.0% | |
| GGCAAATGCTTACCAACTTA+TGG | - | Chr7:30348884-30348903 | MsG0780037652.01.T01:intron | 40.0% | |
| GGTGTTCGGATTTCATAATC+CGG | + | Chr7:30347819-30347838 | None:intergenic | 40.0% | |
| GTATATATAACCTAGCCGTC+CGG | + | Chr7:30347896-30347915 | None:intergenic | 40.0% | |
| GTTACCGACAAATCAAGCAA+TGG | + | Chr7:30349180-30349199 | None:intergenic | 40.0% | |
| TCAACACATCTGTCATGTCA+TGG | + | Chr7:30348783-30348802 | None:intergenic | 40.0% | |
| TCACGTCATATGATCTGTAC+TGG | - | Chr7:30348119-30348138 | MsG0780037652.01.T01:CDS | 40.0% | |
| TCCTGCTCAGTTCAAATACA+GGG | + | Chr7:30347840-30347859 | None:intergenic | 40.0% | |
| TCTCAGGTGGATCATCAATT+AGG | + | Chr7:30348282-30348301 | None:intergenic | 40.0% | |
| TCTTCTATTGCCACCGTTAT+CGG | + | Chr7:30348590-30348609 | None:intergenic | 40.0% | |
| TGATAGTAGTTGAAGTGGCA+CGG | + | Chr7:30348918-30348937 | None:intergenic | 40.0% | |
| TGATCAATACAAACAGCAGG+AGG | + | Chr7:30348460-30348479 | None:intergenic | 40.0% | |
| TGCTTACCAACTTATGGAAG+AGG | - | Chr7:30348890-30348909 | MsG0780037652.01.T01:intron | 40.0% | |
| TTCCTGCTCAGTTCAAATAC+AGG | + | Chr7:30347841-30347860 | None:intergenic | 40.0% | |
| TTGAATCCACCATCTCATGA+AGG | + | Chr7:30348852-30348871 | None:intergenic | 40.0% | |
| TTTAGGCGATGCAAAAGTAG+AGG | - | Chr7:30348417-30348436 | MsG0780037652.01.T01:intron | 40.0% | |
| ! | AGAGGTTACTTGTTGACTGT+TGG | - | Chr7:30348721-30348740 | MsG0780037652.01.T01:intron | 40.0% |
| ! | ATTGGTAAATCCGATAACGG+TGG | - | Chr7:30348577-30348596 | MsG0780037652.01.T01:intron | 40.0% |
| ! | CAGTTCAAATACAGGGTGTT+CGG | + | Chr7:30347833-30347852 | None:intergenic | 40.0% |
| ! | CCTTCCCCTATTCGATTTTT+AGG | - | Chr7:30348082-30348101 | MsG0780037652.01.T01:CDS | 40.0% |
| ! | GAAGGTGCACACATTCATTT+GGG | + | Chr7:30348834-30348853 | None:intergenic | 40.0% |
| ! | GCGTGATTTTCTGATCAGTT+TGG | + | Chr7:30347713-30347732 | None:intergenic | 40.0% |
| ! | GTGAAACTTGGACTTGTTCA+GGG | - | Chr7:30347748-30347767 | MsG0780037652.01.T01:CDS | 40.0% |
| ! | TATGGTTTGGAGCAGCAATT+TGG | - | Chr7:30348000-30348019 | MsG0780037652.01.T01:CDS | 40.0% |
| ! | TCATCAATTAGGGCATCAAC+GGG | + | Chr7:30348271-30348290 | None:intergenic | 40.0% |
| ! | TGAAGGTGCACACATTCATT+TGG | + | Chr7:30348835-30348854 | None:intergenic | 40.0% |
| ! | TGCAACACGGAATGATTTGT+TGG | - | Chr7:30348510-30348529 | MsG0780037652.01.T01:intron | 40.0% |
| ! | TGTGAAACTTGGACTTGTTC+AGG | - | Chr7:30347747-30347766 | MsG0780037652.01.T01:CDS | 40.0% |
| !! | AAGTTGGTAAGCATTTGCCT+CGG | + | Chr7:30348883-30348902 | None:intergenic | 40.0% |
| !! | ACGGAATGATTTGTTGGAGT+GGG | - | Chr7:30348516-30348535 | MsG0780037652.01.T01:intron | 40.0% |
| !! | ACTTGTTGACTGTTGGTGAT+TGG | - | Chr7:30348728-30348747 | MsG0780037652.01.T01:intron | 40.0% |
| !! | ATTTCAATTTTCGGTGGTGG+TGG | + | Chr7:30348394-30348413 | None:intergenic | 40.0% |
| !! | GTAGGGAGTGTTTGTGATAA+AGG | + | Chr7:30347947-30347966 | None:intergenic | 40.0% |
| !! | GTTTCTGTACTGGTGCTATT+CGG | + | Chr7:30348199-30348218 | None:intergenic | 40.0% |
| !!! | TGTGTGTTTTTAGAGGCGTA+GGG | + | Chr7:30347964-30347983 | None:intergenic | 40.0% |
| AAAACAAAATCCGGACGGCT+AGG | - | Chr7:30347883-30347902 | MsG0780037652.01.T01:CDS | 45.0% | |
| AAAGGTGATGTGCTTCAGCT+AGG | + | Chr7:30347929-30347948 | None:intergenic | 45.0% | |
| AACGGTAGTTAACTACCGCT+AGG | - | Chr7:30347491-30347510 | MsG0780037652.01.T01:CDS | 45.0% | |
| AATTACCCAAATGCCCCTAG+CGG | + | Chr7:30347509-30347528 | None:intergenic | 45.0% | |
| ACAGGTATAAGCGGTCCATT+AGG | - | Chr7:30348959-30348978 | MsG0780037652.01.T01:intron | 45.0% | |
| ACCCTGTATTTGAACTGAGC+AGG | - | Chr7:30347836-30347855 | MsG0780037652.01.T01:CDS | 45.0% | |
| ACGGTAGTTAACTACCGCTA+GGG | - | Chr7:30347492-30347511 | MsG0780037652.01.T01:CDS | 45.0% | |
| ACGGTTCCTCTTCCATAAGT+TGG | + | Chr7:30348899-30348918 | None:intergenic | 45.0% | |
| AGCAGCAATTTGGCCATCAA+GGG | - | Chr7:30348010-30348029 | MsG0780037652.01.T01:CDS | 45.0% | |
| ATGATGTTAACCCCCCTTGA+TGG | + | Chr7:30348026-30348045 | None:intergenic | 45.0% | |
| ATGTGTGCACCTTCATGAGA+TGG | - | Chr7:30348840-30348859 | MsG0780037652.01.T01:intron | 45.0% | |
| CACTGGCATCATCAGAATCA+TGG | + | Chr7:30349059-30349078 | None:intergenic | 45.0% | |
| CGAAATGCATGAATGCAGTC+CGG | + | Chr7:30348165-30348184 | None:intergenic | 45.0% | |
| CGCTGATCAATACAAACAGC+AGG | + | Chr7:30348463-30348482 | None:intergenic | 45.0% | |
| GTCTACCATCACCAACTTTG+AGG | + | Chr7:30348756-30348775 | None:intergenic | 45.0% | |
| TCCGGAAAACAAAATCCGGA+CGG | - | Chr7:30347878-30347897 | MsG0780037652.01.T01:CDS | 45.0% | |
| TCCTAGTCCTATTGTGTTGC+CGG | - | Chr7:30348309-30348328 | MsG0780037652.01.T01:intron | 45.0% | |
| TGGTGGAGGATTCTCAGATT+AGG | + | Chr7:30348371-30348390 | None:intergenic | 45.0% | |
| ! | CTCGGTTTTTCCACTGCTAT+TGG | - | Chr7:30348559-30348578 | MsG0780037652.01.T01:intron | 45.0% |
| !! | CACGGAATGATTTGTTGGAG+TGG | - | Chr7:30348515-30348534 | MsG0780037652.01.T01:intron | 45.0% |
| !!! | GTGTGTGTTTTTAGAGGCGT+AGG | + | Chr7:30347965-30347984 | None:intergenic | 45.0% |
| AAGACTTTGCGCGAGATAGC+TGG | - | Chr7:30348667-30348686 | MsG0780037652.01.T01:intron | 50.0% | |
| ACCGGCAACACAATAGGACT+AGG | + | Chr7:30348313-30348332 | None:intergenic | 50.0% | |
| AGCAATTTGGCCATCAAGGG+GGG | - | Chr7:30348013-30348032 | MsG0780037652.01.T01:CDS | 50.0% | |
| CAAACAGCAGGAGGAATAGG+AGG | + | Chr7:30348451-30348470 | None:intergenic | 50.0% | |
| CAGCAATTTGGCCATCAAGG+GGG | - | Chr7:30348012-30348031 | MsG0780037652.01.T01:CDS | 50.0% | |
| CGAGAGAAAGCTAGGAAGCT+CGG | - | Chr7:30348541-30348560 | MsG0780037652.01.T01:intron | 50.0% | |
| CGGTAGTTAACTACCGCTAG+GGG | - | Chr7:30347493-30347512 | MsG0780037652.01.T01:CDS | 50.0% | |
| CTAGGAGGTTCAATCTCAGG+TGG | + | Chr7:30348295-30348314 | None:intergenic | 50.0% | |
| GAGCAGCAATTTGGCCATCA+AGG | - | Chr7:30348009-30348028 | MsG0780037652.01.T01:CDS | 50.0% | |
| GATGTGCTTCAGCTAGGTTC+TGG | + | Chr7:30347923-30347942 | None:intergenic | 50.0% | |
| GCAGCAATTTGGCCATCAAG+GGG | - | Chr7:30348011-30348030 | MsG0780037652.01.T01:CDS | 50.0% | |
| GGACTAGGAGGTTCAATCTC+AGG | + | Chr7:30348298-30348317 | None:intergenic | 50.0% | |
| GGCAACACAATAGGACTAGG+AGG | + | Chr7:30348310-30348329 | None:intergenic | 50.0% | |
| GGTGATTGGAGCCTCAAAGT+TGG | - | Chr7:30348742-30348761 | MsG0780037652.01.T01:intron | 50.0% | |
| TGGAAGCAGTTAACTGCTGC+TGG | + | Chr7:30347463-30347482 | None:intergenic | 50.0% | |
| TGGATTCAAACGTTCCTCCG+AGG | - | Chr7:30348863-30348882 | MsG0780037652.01.T01:intron | 50.0% | |
| TGTGCACCTTCATGAGATGG+TGG | - | Chr7:30348843-30348862 | MsG0780037652.01.T01:intron | 50.0% | |
| TTGGTAAGCATTTGCCTCGG+AGG | + | Chr7:30348880-30348899 | None:intergenic | 50.0% | |
| ! | AGTGGGTTCGAGAGAAAGCT+AGG | - | Chr7:30348533-30348552 | MsG0780037652.01.T01:intron | 50.0% |
| ! | GTCCATTAGGAGTACGAGGA+CGG | - | Chr7:30348972-30348991 | MsG0780037652.01.T01:intron | 50.0% |
| !! | AACTACCGCTAGGGGCATTT+GGG | - | Chr7:30347501-30347520 | MsG0780037652.01.T01:CDS | 50.0% |
| !! | TAACTACCGCTAGGGGCATT+TGG | - | Chr7:30347500-30347519 | MsG0780037652.01.T01:CDS | 50.0% |
| !! | TGGAGCCTCAAAGTTGGTGA+TGG | - | Chr7:30348748-30348767 | MsG0780037652.01.T01:intron | 50.0% |
| !!! | GCCGTCCGGATTTTGTTTTC+CGG | + | Chr7:30347882-30347901 | None:intergenic | 50.0% |
| !!! | TCAATTTTCGGTGGTGGTGG+TGG | + | Chr7:30348391-30348410 | None:intergenic | 50.0% |
| GAGTGTCAGTTTCGGCTGAG+AGG | - | Chr7:30348703-30348722 | MsG0780037652.01.T01:intron | 55.0% | |
| GCGTGAGAAGGCAACAAGGT+GGG | + | Chr7:30347620-30347639 | None:intergenic | 55.0% | |
| GTCCGTCCTCGTACTCCTAA+TGG | + | Chr7:30348977-30348996 | None:intergenic | 55.0% | |
| ! | AGCGGTCCATTAGGAGTACG+AGG | - | Chr7:30348968-30348987 | MsG0780037652.01.T01:intron | 55.0% |
| ! | TTAACTGCTGCTGGTGCCAG+CGG | + | Chr7:30347454-30347473 | None:intergenic | 55.0% |
| !!! | ATTTTCGGTGGTGGTGGTGG+TGG | + | Chr7:30348388-30348407 | None:intergenic | 55.0% |
| AAAACGCAGGGCGCGTGAGA+AGG | + | Chr7:30347632-30347651 | None:intergenic | 60.0% | |
| CGCGTGAGAAGGCAACAAGG+TGG | + | Chr7:30347621-30347640 | None:intergenic | 60.0% | |
| GGGCGCGTGAGAAGGCAACA+AGG | + | Chr7:30347624-30347643 | None:intergenic | 65.0% | |
| !! | TTCGGTGGTGGTGGTGGTGG+AGG | + | Chr7:30348385-30348404 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 30347437 | 30349212 | 30347437 | ID=MsG0780037652.01;Name=MsG0780037652.01 |
| Chr7 | mRNA | 30347437 | 30349212 | 30347437 | ID=MsG0780037652.01.T01;Parent=MsG0780037652.01;Name=MsG0780037652.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.66|1|1|3|0|318 |
| Chr7 | exon | 30349155 | 30349212 | 30349155 | ID=MsG0780037652.01.T01:exon:4637;Parent=MsG0780037652.01.T01 |
| Chr7 | exon | 30348328 | 30348392 | 30348328 | ID=MsG0780037652.01.T01:exon:4638;Parent=MsG0780037652.01.T01 |
| Chr7 | exon | 30347437 | 30348270 | 30347437 | ID=MsG0780037652.01.T01:exon:4639;Parent=MsG0780037652.01.T01 |
| Chr7 | CDS | 30349155 | 30349212 | 30349155 | ID=MsG0780037652.01.T01:cds;Parent=MsG0780037652.01.T01 |
| Chr7 | CDS | 30348328 | 30348392 | 30348328 | ID=MsG0780037652.01.T01:cds;Parent=MsG0780037652.01.T01 |
| Chr7 | CDS | 30347437 | 30348270 | 30347437 | ID=MsG0780037652.01.T01:cds;Parent=MsG0780037652.01.T01 |
| Gene Sequence |
| Protein sequence |
