AlfalfaGEDB | MsG0780037866.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037866.01

KEGG: K09422
GO: GO:0003677
PFAM: PF00249

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037866.01.T01	RHN45596.1	76.323	359	72	2	1	348	1	357	0	558

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037866.01.T01	Q9S7L2	58.088	136	55	1	162	297	210	343	1.27E-48	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037866.01.T01	A0A396GWT1	76.323	359	72	2	1	348	1	357	0.0	558

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TFs/TRs:

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Gene ID	Type	Classification
MsG0780037866.01.T01	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037866.01.T01	MTR_7g450950	79.167	336	59	1	24	348	1	336	0.0	553
MsG0780037866.01.T01	MTR_7g451170	43.017	358	150	10	37	347	34	384	9.53e-76	239
MsG0780037866.01.T01	MTR_7g037260	41.768	328	145	9	56	341	8	331	1.67e-70	224
MsG0780037866.01.T01	MTR_7g037130	41.317	334	148	10	52	342	4	332	1.18e-68	219
MsG0780037866.01.T01	MTR_7g035350	35.396	404	166	7	36	346	29	430	2.08e-67	219
MsG0780037866.01.T01	MTR_4g088015	42.809	299	140	6	36	307	63	357	4.50e-64	210
MsG0780037866.01.T01	MTR_1g057980	47.059	221	108	4	82	302	1	212	2.11e-57	188
MsG0780037866.01.T01	MTR_3g077650	56.552	145	61	1	159	303	171	313	2.61e-48	169
MsG0780037866.01.T01	MTR_4g105660	56.934	137	57	2	163	299	174	308	1.82e-45	160
MsG0780037866.01.T01	MTR_3g463400	54.198	131	57	1	168	295	132	262	9.56e-44	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037866.01.T01	AT4G18770	58.088	136	55	1	162	297	210	343	1.29e-49	172
MsG0780037866.01.T01	AT3G27785	49.718	177	78	4	128	299	151	321	3.97e-47	165
MsG0780037866.01.T01	AT5G40360	45.699	186	92	2	111	296	109	285	1.11e-46	162
MsG0780037866.01.T01	AT5G58850	50.725	138	57	1	168	294	104	241	7.25e-42	151
MsG0780037866.01.T01	AT5G11050	50.000	140	57	1	168	294	104	243	1.09e-41	150
MsG0780037866.01.T01	AT2G25230	44.595	148	80	1	149	296	6	151	1.75e-35	129
MsG0780037866.01.T01	AT5G40430	45.324	139	73	2	163	301	48	183	9.67e-35	128
MsG0780037866.01.T01	AT5G11510	52.336	107	50	1	168	273	80	186	1.01e-31	126
MsG0780037866.01.T01	AT5G11510	52.336	107	50	1	168	273	80	186	1.01e-31	126
MsG0780037866.01.T01	AT5G11510	52.336	107	50	1	168	273	80	186	1.01e-31	126

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Find 88 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTCTGCGGACTCAT+TGG	0.439145	7:+35013511	None:intergenic
AAAAGGAAATGATGGATAAT+GGG	0.418778	7:-35011820	MsG0780037866.01.T01:CDS
AAAATCCTTTGTCAGTGTTT+AGG	0.328248	7:+35013456	None:intergenic
AAAATGTTCCCTATATCTAT+GGG	0.484467	7:-35013694	MsG0780037866.01.T01:CDS
AAAGAAAAGAGGAGCAACAC+TGG	0.566738	7:-35011902	MsG0780037866.01.T01:CDS
AAAGACTGGGAAGCAGTGTT+GGG	0.519302	7:-35012900	MsG0780037866.01.T01:CDS
AAAGTTACTCATACAATCAA+AGG	0.548539	7:-35013233	MsG0780037866.01.T01:CDS
AAATGTTCCCTATATCTATG+GGG	0.694024	7:-35013693	MsG0780037866.01.T01:CDS
AACAAAATGGAAGCCGTGCA+TGG	0.535185	7:-35013482	MsG0780037866.01.T01:CDS
AACATCATTTCTTGGATTTG+AGG	0.356591	7:+35013386	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCCTTTGTCAGTGTTT+AGG	+	Chr7:35011960-35011979	None:intergenic	30.0%
AAATGTTCCCTATATCTATG+GGG	-	Chr7:35011720-35011739	MsG0780037866.01.T01:CDS	30.0%
AACATCATTTCTTGGATTTG+AGG	+	Chr7:35012030-35012049	None:intergenic	30.0%
AATCCAAGATGAAAGAAAAG+AGG	-	Chr7:35013500-35013519	MsG0780037866.01.T01:CDS	30.0%
AATTGCTCAAGATTGTGAAA+AGG	-	Chr7:35013576-35013595	MsG0780037866.01.T01:CDS	30.0%
ACCATCTTCAACCAAATATT+AGG	-	Chr7:35012548-35012567	MsG0780037866.01.T01:intron	30.0%
AGAATTCCATCAAGAATCAT+TGG	-	Chr7:35013455-35013474	MsG0780037866.01.T01:CDS	30.0%
AGATTGTGAAAAGGAAATGA+TGG	-	Chr7:35013585-35013604	MsG0780037866.01.T01:CDS	30.0%
ATCCACACATTAAATACAGA+AGG	-	Chr7:35013333-35013352	MsG0780037866.01.T01:CDS	30.0%
ATTGATGCTCATAAAGAAGT+TGG	-	Chr7:35013388-35013407	MsG0780037866.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	35011694	35013741	35011694	ID=MsG0780037866.01;Name=MsG0780037866.01
Chr7	mRNA	35011694	35013741	35011694	ID=MsG0780037866.01.T01;Parent=MsG0780037866.01;Name=MsG0780037866.01.T01;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|3\|0\|349
Chr7	exon	35013209	35013741	35013209	ID=MsG0780037866.01.T01:exon:16060;Parent=MsG0780037866.01.T01
Chr7	exon	35012865	35012991	35012865	ID=MsG0780037866.01.T01:exon:16059;Parent=MsG0780037866.01.T01
Chr7	exon	35011694	35012083	35011694	ID=MsG0780037866.01.T01:exon:16058;Parent=MsG0780037866.01.T01
Chr7	CDS	35013209	35013741	35013209	ID=MsG0780037866.01.T01:cds;Parent=MsG0780037866.01.T01
Chr7	CDS	35012865	35012991	35012865	ID=MsG0780037866.01.T01:cds;Parent=MsG0780037866.01.T01
Chr7	CDS	35011694	35012083	35011694	ID=MsG0780037866.01.T01:cds;Parent=MsG0780037866.01.T01

Gene Sequence

>MsG0780037866.01.T01

ATGGAGTTTAATCCAAATTACATAGAAAATGTTCCCTATATCTATGGGGTTTTCCCTCTAAATCAATGCATGAAACCAGAGATTCGTACTATGGTTTCTTTTCCACCTCTTAATGATGCTAACCATCATTTTGTTTTGGCTGCAATTGATCATTCCTCCACTGGTCCCTTTCTTATGATCCCAAGCCCTGCATTCAAACCTACACACACCAATGAGTCCGCAGAAGGTTTTGTTAATAACAAAATGGAAGCCGTGCATGGCTACCTAAACACTGACAAAGGATTTTGGAATTTCTACCAAATCAATTCCCTTCAATCTAGTAAACCTTCAGAACCTCAAATCCAAGAAATGATGTTTAAGCTCCAAGAACATCTTTATTCCATTGATAGAACTGAAAACAACCCTCTGGATGCTGATCAAAGACTCGTTCTTGTTGACAAGAACCAACAAAAGAGTGATCAAGTAAAGAATAATGAAATTTTGACCAAAGTTACTCATACAATCAAAGGCAAATGGACTGCAGATGATGACAGCATTCTTGTCCAGTTCGTGAGTTTGTTAGGGCTTAAACAATGGTCATATATTGCTGAATTCTTGGATGGAAAGACTGGGAAGCAGTGTTGGGAGAGATGGACTAACCATCTTCAACCAAATATTAGGAAGGGGCCATGGAACGAAGAGGAGGATGCAATTCTAATTGATGCTCATAAAGAAGTTGGGAACAAGTGGGCAGAAATTTCAAAGAGATTGCCAGGACGTACTGAGAATTCCATCAAGAATCATTGGAATGCTACTAAGAGGAGTCTGAAATCCAAGATGAAAGAAAAGAGGAGCAACACTGGTCCAAGAAGAAAATTGCTTCAAAACTATATTAGGGAAGTCACAATTGCTCAAGATTGTGAAAAGGAAATGATGGATAATGGGAATGAGGATGACAACAATGACTTCAACTATAAAGATTGGGCAACTCAAGAGGATGATGTTGGTGGCTATATTGATGGAAATAAAATGAAAAATGGATATGGCATAATGGATTATGAGGTTGTCTAG

Protein sequence

>MsG0780037866.01.T01

MEFNPNYIENVPYIYGVFPLNQCMKPEIRTMVSFPPLNDANHHFVLAAIDHSSTGPFLMIPSPAFKPTHTNESAEGFVNNKMEAVHGYLNTDKGFWNFYQINSLQSSKPSEPQIQEMMFKLQEHLYSIDRTENNPLDADQRLVLVDKNQQKSDQVKNNEILTKVTHTIKGKWTADDDSILVQFVSLLGLKQWSYIAEFLDGKTGKQCWERWTNHLQPNIRKGPWNEEEDAILIDAHKEVGNKWAEISKRLPGRTENSIKNHWNATKRSLKSKMKEKRSNTGPRRKLLQNYIREVTIAQDCEKEMMDNGNEDDNNDFNYKDWATQEDDVGGYIDGNKMKNGYGIMDYEVV*