AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038222.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038222.01.T01 MTR_7g050560 81.897 116 21 0 91 206 200 315 3.06e-65 204
MsG0780038222.01.T01 MTR_7g050560 78.351 97 21 0 1 97 1 97 4.04e-48 160
MsG0780038222.01.T01 MTR_7g050580 72.650 117 31 1 91 206 199 315 8.40e-57 182
MsG0780038222.01.T01 MTR_7g050580 79.592 98 20 0 1 98 1 98 7.89e-50 164
MsG0780038222.01.T01 MTR_7g050710 69.643 112 32 1 1 112 1 110 3.05e-48 160
MsG0780038222.01.T01 MTR_7g050710 58.879 107 41 2 91 194 214 320 2.66e-35 127
MsG0780038222.01.T01 MTR_3g098790 73.469 98 26 0 1 98 1 98 2.50e-47 158
MsG0780038222.01.T01 MTR_3g098790 68.750 96 29 1 100 194 217 312 6.27e-41 142
MsG0780038222.01.T01 MTR_7g050590 69.811 106 30 2 91 194 188 293 1.77e-46 155
MsG0780038222.01.T01 MTR_7g050590 78.571 70 15 0 28 97 1 70 1.63e-33 121
MsG0780038222.01.T01 MTR_7g050720 73.118 93 25 0 5 97 2 94 2.61e-42 145
MsG0780038222.01.T01 MTR_7g050720 58.889 90 32 5 99 183 228 317 2.11e-24 98.2
MsG0780038222.01.T01 MTR_7g050640 65.306 98 34 0 1 98 1 98 8.24e-40 132
MsG0780038222.01.T01 MTR_3g061290 53.846 91 40 1 10 100 9 97 4.62e-26 100
MsG0780038222.01.T01 MTR_3g061330 47.321 112 54 3 1 112 1 107 1.60e-25 99.8
MsG0780038222.01.T01 MTR_3g061310 45.631 103 52 2 10 112 9 107 2.68e-23 94.7
MsG0780038222.01.T01 MTR_8g103940 47.727 88 46 0 11 98 37 124 6.89e-23 95.9
MsG0780038222.01.T01 MTR_3g061320 51.685 89 41 1 10 98 9 95 8.27e-23 93.2
MsG0780038222.01.T01 MTR_3g061350 47.959 98 48 2 1 98 1 95 6.56e-22 90.9
MsG0780038222.01.T01 MTR_3g061370 50.000 88 42 1 11 98 7 92 2.08e-21 89.4
MsG0780038222.01.T01 MTR_5g044670 40.000 100 56 1 3 98 2 101 2.09e-21 90.1
MsG0780038222.01.T01 MTR_3g061340 50.562 89 41 2 10 97 9 95 1.06e-20 87.4
MsG0780038222.01.T01 MTR_1g108780 52.857 70 33 0 29 98 13 82 4.42e-19 84.7
MsG0780038222.01.T01 MTR_1g108780 27.072 181 115 5 3 181 125 290 1.54e-11 63.2
MsG0780038222.01.T01 MTR_1g035460 50.000 70 35 0 28 97 1 70 1.35e-18 83.2
MsG0780038222.01.T01 MTR_3g061220 43.820 89 35 2 10 98 9 82 9.16e-18 75.9
MsG0780038222.01.T01 MTR_3g005480 33.981 103 61 1 2 97 3 105 9.76e-17 76.6
MsG0780038222.01.T01 MTR_5g070440 35.955 89 57 0 12 100 20 108 2.66e-16 75.5
MsG0780038222.01.T01 MTR_3g005490 31.731 104 64 1 1 97 2 105 1.46e-15 73.6
MsG0780038222.01.T01 MTR_4g068320 37.647 85 53 0 13 97 6 90 1.70e-15 74.3
MsG0780038222.01.T01 MTR_1g050845 37.864 103 60 2 10 112 6 104 2.73e-15 74.3
MsG0780038222.01.T01 MTR_3g005495 39.326 89 54 0 12 100 242 330 4.94e-15 73.2
MsG0780038222.01.T01 MTR_3g005495 36.232 69 44 0 29 97 29 97 3.05e-11 62.0
MsG0780038222.01.T01 MTR_3g005460 36.047 86 55 0 12 97 24 109 6.25e-15 73.2
MsG0780038222.01.T01 MTR_3g005460 36.264 91 57 1 11 100 260 350 6.13e-14 70.1
MsG0780038222.01.T01 MTR_1g034240 37.647 85 53 0 13 97 7 91 1.31e-14 72.0
MsG0780038222.01.T01 MTR_4g119990 41.758 91 52 1 11 100 13 103 1.76e-14 71.2
MsG0780038222.01.T01 MTR_6g043890 41.935 93 49 2 11 100 13 103 1.80e-14 71.2
MsG0780038222.01.T01 MTR_1g035620 41.463 82 46 1 10 91 6 85 3.35e-14 70.9
MsG0780038222.01.T01 MTR_1g035640 41.000 100 51 3 13 112 9 100 4.64e-14 70.5
MsG0780038222.01.T01 MTR_1g035480 41.053 95 53 2 6 100 10 101 4.97e-14 67.8
MsG0780038222.01.T01 MTR_3g005420 37.079 89 56 0 12 100 288 376 5.70e-14 70.1
MsG0780038222.01.T01 MTR_3g005420 30.208 96 66 1 3 97 30 125 5.04e-11 61.6
MsG0780038222.01.T01 MTR_1g034210 37.647 85 53 0 13 97 7 91 1.55e-13 68.6
MsG0780038222.01.T01 MTR_1g034210 37.647 85 53 0 13 97 7 91 1.76e-13 68.6
MsG0780038222.01.T01 MTR_1g035440 39.362 94 50 2 11 100 13 103 9.06e-13 65.5
MsG0780038222.01.T01 MTR_1g035650 35.922 103 62 2 10 112 6 104 1.08e-12 64.7
MsG0780038222.01.T01 MTR_6g061070 42.105 95 52 2 6 100 11 102 1.11e-12 66.2
MsG0780038222.01.T01 MTR_1g021380 32.090 134 75 3 12 129 16 149 1.20e-12 65.9
MsG0780038222.01.T01 MTR_1g033740 40.000 95 54 2 6 100 15 106 3.03e-12 63.2
MsG0780038222.01.T01 MTR_3g005420 25.000 220 115 5 12 184 269 485 3.71e-12 64.7
MsG0780038222.01.T01 MTR_3g005420 30.208 96 66 1 3 97 11 106 5.05e-11 61.6
MsG0780038222.01.T01 MTR_1g021320 32.955 88 59 0 11 98 23 110 3.75e-12 65.1
MsG0780038222.01.T01 MTR_1g021440 32.955 88 58 1 11 98 21 107 3.76e-12 64.3
MsG0780038222.01.T01 MTR_1g021440 32.955 88 58 1 11 98 21 107 4.08e-12 64.3
MsG0780038222.01.T01 MTR_1g021400 31.818 88 60 0 11 98 28 115 4.08e-12 64.7
MsG0780038222.01.T01 MTR_1g021440 32.955 88 58 1 11 98 21 107 5.77e-12 64.3
MsG0780038222.01.T01 MTR_1g021440 32.955 88 58 1 11 98 21 107 6.03e-12 63.9
MsG0780038222.01.T01 MTR_1g035570 40.260 77 44 1 22 98 14 88 1.59e-11 62.8
MsG0780038222.01.T01 MTR_3g005440 35.211 71 46 0 27 97 34 104 2.30e-11 62.4
MsG0780038222.01.T01 MTR_1g035500 37.895 95 56 2 6 100 18 109 3.32e-11 60.1
MsG0780038222.01.T01 MTR_1g021360 34.091 88 56 1 11 98 182 267 4.43e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038222.01.T01 AT3G18990 38.824 85 52 0 13 97 6 90 2.27e-16 76.6
MsG0780038222.01.T01 AT3G18990 38.824 85 52 0 13 97 6 90 2.56e-16 76.3
MsG0780038222.01.T01 AT4G01580 40.909 88 52 0 13 100 30 117 5.29e-16 73.2
MsG0780038222.01.T01 AT1G49475 40.000 85 50 1 13 97 34 117 1.06e-15 72.4
MsG0780038222.01.T01 AT3G18960 39.773 88 53 0 13 100 30 117 1.62e-15 72.0
MsG0780038222.01.T01 AT3G18960 39.773 88 53 0 13 100 30 117 1.72e-15 72.4
MsG0780038222.01.T01 AT3G18960 43.056 72 41 0 29 100 9 80 4.86e-12 62.4

Find 38 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTTAAATGAAGGAATT+TGG 0.170862 7:+42311895 MsG0780038222.01.T01:CDS
TATTTCTCCACAAACTTTCT+TGG 0.219009 7:-42310841 None:intergenic
TGCAAAGTGGAAATTAAATT+TGG 0.244297 7:+42310909 MsG0780038222.01.T01:CDS
AGAAAGTTTGTGGAGAAATA+TGG 0.293086 7:+42310844 MsG0780038222.01.T01:CDS
CTAATCAGGATGACCCTTAC+AGG 0.321649 7:+42311930 MsG0780038222.01.T01:CDS
AATTTCCACTTTGCACCATT+TGG 0.355722 7:-42310901 None:intergenic
ATCCTGATTAGGTACTTTGC+AGG 0.384916 7:-42311918 None:intergenic
TGGCAAAATATTCTTTGAAA+AGG 0.391627 7:+42310942 MsG0780038222.01.T01:CDS
TGGTAATAGACACTTTGATT+TGG 0.391800 7:+42311848 MsG0780038222.01.T01:CDS
AAATATTCTTTGAAAAGGGT+TGG 0.421071 7:+42310947 MsG0780038222.01.T01:CDS
GTTTATTTGTTGTTAAATGA+AGG 0.421453 7:+42311888 MsG0780038222.01.T01:CDS
GGCCTGCAAAGTACCTAATC+AGG 0.423211 7:+42311916 MsG0780038222.01.T01:CDS
GGCAAAATATTCTTTGAAAA+GGG 0.426542 7:+42310943 MsG0780038222.01.T01:CDS
CTGTAAGGGTCATCCTGATT+AGG 0.427523 7:-42311929 None:intergenic
GATGATACCAAGAAAGTTTG+TGG 0.432322 7:+42310834 MsG0780038222.01.T01:intron
GATCAATTTGTGGTCCTGTA+AGG 0.446598 7:-42311944 None:intergenic
CAGAATATACCACGTACGTT+TGG 0.475980 7:+42311828 MsG0780038222.01.T01:intron
ACTTTGTGATGCTGAACAAT+TGG 0.483912 7:-42312099 None:intergenic
ATATATCTAAAGACTCCAAA+TGG 0.496307 7:+42310886 MsG0780038222.01.T01:CDS
TTAAATTTGGTAAATAGTGA+TGG 0.506736 7:+42310922 MsG0780038222.01.T01:CDS
AATGAAGGTAAGTATAGTGC+TGG 0.512079 7:-42312042 None:intergenic
TCTAAAGATGTGCACAATGA+AGG 0.513673 7:-42312057 None:intergenic
GAGGACAATAACTTGAAAGT+TGG 0.514989 7:+42311993 MsG0780038222.01.T01:CDS
CCAACTGTGAGATCAATTTG+TGG 0.524959 7:-42311954 None:intergenic
GAGAAGCTTCTTCTTTCACT+CGG 0.532825 7:-42312207 None:intergenic
CATATCTGAAAAGCACAAGA+TGG 0.540339 7:-42311005 None:intergenic
ATCAATTTGTGGTCCTGTAA+GGG 0.548089 7:-42311943 None:intergenic
CCACAAATTGATCTCACAGT+TGG 0.558906 7:+42311954 MsG0780038222.01.T01:CDS
GAGTATCATTCTCTAGCTCA+TGG 0.575939 7:+42310982 MsG0780038222.01.T01:CDS
TTTGATTTGGATAAGAAGAG+AGG 0.576081 7:+42311861 MsG0780038222.01.T01:CDS
AAATTGATCTCACAGTTGGA+TGG 0.578678 7:+42311958 MsG0780038222.01.T01:CDS
AGAAGAAGCTTCTCAAGGAT+AGG 0.587507 7:+42312216 MsG0780038222.01.T01:CDS
AGAAGCTTCTTCTTTCACTC+GGG 0.589107 7:-42312206 None:intergenic
CATGGCTAGTGAAACTTCTG+AGG 0.608748 7:+42309642 None:intergenic
GTGAAAGAAGAAGCTTCTCA+AGG 0.611713 7:+42312211 MsG0780038222.01.T01:CDS
AGACTCCAAATGGTGCAAAG+TGG 0.616755 7:+42310896 MsG0780038222.01.T01:CDS
TGGATGGAAGACATTTGCAG+AGG 0.667798 7:+42311974 MsG0780038222.01.T01:CDS
TGTCTATTACCAAACGTACG+TGG 0.717947 7:-42311837 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATTAAGGAAAATAA+AGG - Chr7:42309993-42310012 None:intergenic 10.0%
!! AATATATATGGGAATATAAA+TGG + Chr7:42311621-42311640 MsG0780038222.01.T01:intron 15.0%
!! TATAATTAAAAAAATGCACA+TGG + Chr7:42310084-42310103 MsG0780038222.01.T01:intron 15.0%
!! TCAGAAAGTAATAAAAATTA+AGG - Chr7:42310003-42310022 None:intergenic 15.0%
!! AACTATGATATGTGTATTTA+TGG - Chr7:42310281-42310300 None:intergenic 20.0%
!! AATTCACTAAGTTATTATTG+TGG + Chr7:42310738-42310757 MsG0780038222.01.T01:intron 20.0%
!! ACTATGATATGTGTATTTAT+GGG - Chr7:42310280-42310299 None:intergenic 20.0%
!! TAAAATTAGAAAGTTCTTGT+TGG - Chr7:42311779-42311798 None:intergenic 20.0%
!! TTAAATTTGGTAAATAGTGA+TGG + Chr7:42310922-42310941 MsG0780038222.01.T01:CDS 20.0%
!! TTATATCATGCATACTAATT+TGG + Chr7:42310798-42310817 MsG0780038222.01.T01:intron 20.0%
!!! GACAATTTTTTTTCTTCAAA+GGG + Chr7:42310135-42310154 MsG0780038222.01.T01:intron 20.0%
!!! GTTTATTTGTTGTTAAATGA+AGG + Chr7:42311888-42311907 MsG0780038222.01.T01:CDS 20.0%
! AAACCAACAAGTAATTAACT+TGG + Chr7:42310028-42310047 MsG0780038222.01.T01:intron 25.0%
! AAATCGTGTGACATAATAAA+AGG - Chr7:42309851-42309870 None:intergenic 25.0%
! AACCAACAAGTAATTAACTT+GGG + Chr7:42310029-42310048 MsG0780038222.01.T01:intron 25.0%
! AGAAACGTTCAAAAAACTAT+GGG + Chr7:42310397-42310416 MsG0780038222.01.T01:intron 25.0%
! AGGAAAATAAAGGTTCAAAT+TGG - Chr7:42309983-42310002 None:intergenic 25.0%
! ATATATCTAAAGACTCCAAA+TGG + Chr7:42310886-42310905 MsG0780038222.01.T01:CDS 25.0%
! ATATATGGGAATATAAATGG+AGG + Chr7:42311624-42311643 MsG0780038222.01.T01:intron 25.0%
! ATTATCTTGAAAAAGTGGAT+TGG - Chr7:42309673-42309692 None:intergenic 25.0%
! CAAGTATTATCTTGAAAAAG+TGG - Chr7:42309678-42309697 None:intergenic 25.0%
! GAAAGGATAATTTATCTCTA+AGG - Chr7:42311073-42311092 None:intergenic 25.0%
! TATATGGGAATATAAATGGA+GGG + Chr7:42311625-42311644 MsG0780038222.01.T01:intron 25.0%
! TATCATCACATAGAGTTTAT+TGG + Chr7:42311670-42311689 MsG0780038222.01.T01:intron 25.0%
! TATCTGATTGGATAATTGTT+AGG - Chr7:42311652-42311671 None:intergenic 25.0%
! TCTAACTTAGTTATCAAATC+AGG - Chr7:42310481-42310500 None:intergenic 25.0%
! TGCAAAGTGGAAATTAAATT+TGG + Chr7:42310909-42310928 MsG0780038222.01.T01:CDS 25.0%
! TGTTGTTAAATGAAGGAATT+TGG + Chr7:42311895-42311914 MsG0780038222.01.T01:CDS 25.0%
! TTGTTAACAAAAATCTTAGC+AGG + Chr7:42311314-42311333 MsG0780038222.01.T01:intron 25.0%
!! AAATATTCTTTGAAAAGGGT+TGG + Chr7:42310947-42310966 MsG0780038222.01.T01:CDS 25.0%
!! AACATTGTCTTTTCTTTGAT+TGG + Chr7:42311805-42311824 MsG0780038222.01.T01:intron 25.0%
!! AATTAACTTGGGTAAGATAT+TGG + Chr7:42310040-42310059 MsG0780038222.01.T01:intron 25.0%
!! GGCAAAATATTCTTTGAAAA+GGG + Chr7:42310943-42310962 MsG0780038222.01.T01:CDS 25.0%
!! TGAAAAAACATCTCTTTTTG+AGG + Chr7:42311026-42311045 MsG0780038222.01.T01:CDS 25.0%
!! TGGCAAAATATTCTTTGAAA+AGG + Chr7:42310942-42310961 MsG0780038222.01.T01:CDS 25.0%
!! TGTAATTAAGAATTCGAGTT+TGG + Chr7:42310162-42310181 MsG0780038222.01.T01:intron 25.0%
!! TTATTGTGTTCAAATTTTGC+AGG + Chr7:42311380-42311399 MsG0780038222.01.T01:intron 25.0%
!!! CTATCAGATGTACTTTTTTT+GGG + Chr7:42310303-42310322 MsG0780038222.01.T01:intron 25.0%
!!! GCATATGAGTTTTATTTTTG+TGG + Chr7:42310113-42310132 MsG0780038222.01.T01:intron 25.0%
!!! GGACAATTTTTTTTCTTCAA+AGG + Chr7:42310134-42310153 MsG0780038222.01.T01:intron 25.0%
!!! TCTATCAGATGTACTTTTTT+TGG + Chr7:42310302-42310321 MsG0780038222.01.T01:intron 25.0%
AAGATTGTCACAAGATTTGT+TGG + Chr7:42309904-42309923 MsG0780038222.01.T01:intron 30.0%
AAGGGGTGAGAAATATATAT+GGG + Chr7:42311610-42311629 MsG0780038222.01.T01:intron 30.0%
ACCATCATAAAACACATTAG+TGG - Chr7:42310189-42310208 None:intergenic 30.0%
AGAAAGTTTGTGGAGAAATA+TGG + Chr7:42310844-42310863 MsG0780038222.01.T01:CDS 30.0%
ATATGTAGCCTAATGAAACT+AGG + Chr7:42310221-42310240 MsG0780038222.01.T01:intron 30.0%
ATTGGACAAGAATGACATAT+TGG + Chr7:42310058-42310077 MsG0780038222.01.T01:intron 30.0%
GAGAAACGTTCAAAAAACTA+TGG + Chr7:42310396-42310415 MsG0780038222.01.T01:intron 30.0%
GTTTCATTAGGCTACATATT+TGG - Chr7:42310220-42310239 None:intergenic 30.0%
TAAGGGGTGAGAAATATATA+TGG + Chr7:42311609-42311628 MsG0780038222.01.T01:intron 30.0%
TACCCAAGTTAATTACTTGT+TGG - Chr7:42310034-42310053 None:intergenic 30.0%
TATGTAGCCTAATGAAACTA+GGG + Chr7:42310222-42310241 MsG0780038222.01.T01:intron 30.0%
TATTTCTCCACAAACTTTCT+TGG - Chr7:42310844-42310863 None:intergenic 30.0%
TCTATGTGATGATATCTGAT+TGG - Chr7:42311664-42311683 None:intergenic 30.0%
TCTTGTCTTTACCAGATTAA+GGG + Chr7:42311592-42311611 MsG0780038222.01.T01:intron 30.0%
TGAAGTTGAGAAATTGCAAA+AGG + Chr7:42311193-42311212 MsG0780038222.01.T01:intron 30.0%
TGGTAATAGACACTTTGATT+TGG + Chr7:42311848-42311867 MsG0780038222.01.T01:CDS 30.0%
TTGAGTTAGATTCTTTGTTC+AGG + Chr7:42309765-42309784 MsG0780038222.01.T01:intron 30.0%
! ATTTGTTGGTCATAGTTTGT+GGG + Chr7:42309918-42309937 MsG0780038222.01.T01:intron 30.0%
! GTATTTTCGGTATTTCAGTT+GGG + Chr7:42310685-42310704 MsG0780038222.01.T01:intron 30.0%
! TCCACTAATGTGTTTTATGA+TGG + Chr7:42310185-42310204 MsG0780038222.01.T01:intron 30.0%
!! ATGGTTGATGGAATTTAAAG+AGG - Chr7:42311149-42311168 None:intergenic 30.0%
!! TTTGATTTGGATAAGAAGAG+AGG + Chr7:42311861-42311880 MsG0780038222.01.T01:CDS 30.0%
AAATTGATCTCACAGTTGGA+TGG + Chr7:42311958-42311977 MsG0780038222.01.T01:CDS 35.0%
AACTACCGGATGTCTATTTA+GGG + Chr7:42310346-42310365 MsG0780038222.01.T01:intron 35.0%
AAGACCAAATTGTATACCTC+TGG - Chr7:42311249-42311268 None:intergenic 35.0%
AAGCTTGTAAGTCTTTGACT+TGG + Chr7:42309718-42309737 MsG0780038222.01.T01:intron 35.0%
AATGAAGGTAAGTATAGTGC+TGG - Chr7:42312045-42312064 None:intergenic 35.0%
AATTTCCACTTTGCACCATT+TGG - Chr7:42310904-42310923 None:intergenic 35.0%
ACTTAGTTATCAAATCAGGC+CGG - Chr7:42310477-42310496 None:intergenic 35.0%
ACTTTGTGATGCTGAACAAT+TGG - Chr7:42312102-42312121 None:intergenic 35.0%
ATATTTCTCACCCCTTAATC+TGG - Chr7:42311606-42311625 None:intergenic 35.0%
ATCAATTTGTGGTCCTGTAA+GGG - Chr7:42311946-42311965 None:intergenic 35.0%
ATTGTTCAGCATCACAAAGT+AGG + Chr7:42312102-42312121 MsG0780038222.01.T01:intron 35.0%
CTATTGCTTCCAATTTCACA+TGG - Chr7:42311168-42311187 None:intergenic 35.0%
CTCTTGTCTTTACCAGATTA+AGG + Chr7:42311591-42311610 MsG0780038222.01.T01:intron 35.0%
CTTGTCTTTACCAGATTAAG+GGG + Chr7:42311593-42311612 MsG0780038222.01.T01:intron 35.0%
GAGGACAATAACTTGAAAGT+TGG + Chr7:42311993-42312012 MsG0780038222.01.T01:CDS 35.0%
GATGATACCAAGAAAGTTTG+TGG + Chr7:42310834-42310853 MsG0780038222.01.T01:intron 35.0%
GGTAAAGACAAGAGAAAGAA+TGG - Chr7:42311585-42311604 None:intergenic 35.0%
GGTAAGTTGCAAAGAAACAT+TGG + Chr7:42311522-42311541 MsG0780038222.01.T01:intron 35.0%
GTAGCAACTTTATATCATGC+TGG + Chr7:42311215-42311234 MsG0780038222.01.T01:intron 35.0%
TAACTACCGGATGTCTATTT+AGG + Chr7:42310345-42310364 MsG0780038222.01.T01:intron 35.0%
TAGGGGAAGTTAGTGATATT+GGG + Chr7:42310364-42310383 MsG0780038222.01.T01:intron 35.0%
TCATTAGGCTACATATTTGG+TGG - Chr7:42310217-42310236 None:intergenic 35.0%
TCTAAAGATGTGCACAATGA+AGG - Chr7:42312060-42312079 None:intergenic 35.0%
TGCGTTACTTAACTAACACA+GGG + Chr7:42310662-42310681 MsG0780038222.01.T01:intron 35.0%
TTAGGGGAAGTTAGTGATAT+TGG + Chr7:42310363-42310382 MsG0780038222.01.T01:intron 35.0%
TTATGGGCCTTAGAGATATT+GGG - Chr7:42310264-42310283 None:intergenic 35.0%
TTCCAATTTCACATGGTTGA+TGG - Chr7:42311161-42311180 None:intergenic 35.0%
TTCCATCAACCATGTGAAAT+TGG + Chr7:42311156-42311175 MsG0780038222.01.T01:intron 35.0%
TTGCGTTACTTAACTAACAC+AGG + Chr7:42310661-42310680 MsG0780038222.01.T01:intron 35.0%
TTTATGGGCCTTAGAGATAT+TGG - Chr7:42310265-42310284 None:intergenic 35.0%
! CATATCTGAAAAGCACAAGA+TGG - Chr7:42311008-42311027 None:intergenic 35.0%
! GGTATTTTCGGTATTTCAGT+TGG + Chr7:42310684-42310703 MsG0780038222.01.T01:intron 35.0%
! GTTGTAATTTTCTCAGCAGT+AGG - Chr7:42311419-42311438 None:intergenic 35.0%
!! GATTTGTTGGTCATAGTTTG+TGG + Chr7:42309917-42309936 MsG0780038222.01.T01:intron 35.0%
!! GTATTTTGGAAAGTCCAGTT+GGG - Chr7:42310537-42310556 None:intergenic 35.0%
!! TTTTTGGGAAAATGCACATG+CGG + Chr7:42310318-42310337 MsG0780038222.01.T01:intron 35.0%
!!! AACTAACACAGGGGTATTTT+CGG + Chr7:42310672-42310691 MsG0780038222.01.T01:intron 35.0%
ACGTTCAAAAAACTATGGGC+TGG + Chr7:42310401-42310420 MsG0780038222.01.T01:intron 40.0%
ACTACCGGATGTCTATTTAG+GGG + Chr7:42310347-42310366 MsG0780038222.01.T01:intron 40.0%
ACTTCCCCTAAATAGACATC+CGG - Chr7:42310354-42310373 None:intergenic 40.0%
AGAAACGCCCTAGTTTCATT+AGG - Chr7:42310232-42310251 None:intergenic 40.0%
AGAAGCTTCTTCTTTCACTC+GGG - Chr7:42312209-42312228 None:intergenic 40.0%
AGGGGAAGTTAGTGATATTG+GGG + Chr7:42310365-42310384 MsG0780038222.01.T01:intron 40.0%
ATCCTGATTAGGTACTTTGC+AGG - Chr7:42311921-42311940 None:intergenic 40.0%
CAGAATATACCACGTACGTT+TGG + Chr7:42311828-42311847 MsG0780038222.01.T01:intron 40.0%
CCAACTGTGAGATCAATTTG+TGG - Chr7:42311957-42311976 None:intergenic 40.0%
CCACAAATTGATCTCACAGT+TGG + Chr7:42311954-42311973 MsG0780038222.01.T01:CDS 40.0%
GAGAAGCTTCTTCTTTCACT+CGG - Chr7:42312210-42312229 None:intergenic 40.0%
GATCAATTTGTGGTCCTGTA+AGG - Chr7:42311947-42311966 None:intergenic 40.0%
GCGTTACTTAACTAACACAG+GGG + Chr7:42310663-42310682 MsG0780038222.01.T01:intron 40.0%
GTAGCGACATAGATGAGTAA+AGG - Chr7:42309956-42309975 None:intergenic 40.0%
GTGAAAGAAGAAGCTTCTCA+AGG + Chr7:42312211-42312230 MsG0780038222.01.T01:CDS 40.0%
TACTCATCTATGTCGCTACA+TGG + Chr7:42309957-42309976 MsG0780038222.01.T01:intron 40.0%
TATGGGCCTTAGAGATATTG+GGG - Chr7:42310263-42310282 None:intergenic 40.0%
TGTCTATTACCAAACGTACG+TGG - Chr7:42311840-42311859 None:intergenic 40.0%
! GAGTATCATTCTCTAGCTCA+TGG + Chr7:42310982-42311001 MsG0780038222.01.T01:CDS 40.0%
! GAGTCCAGAGGTATACAATT+TGG + Chr7:42311242-42311261 MsG0780038222.01.T01:intron 40.0%
!! GGTATTTTGGAAAGTCCAGT+TGG - Chr7:42310538-42310557 None:intergenic 40.0%
!! TTGGCTTGGACAAGTTAGTT+CGG + Chr7:42310451-42310470 MsG0780038222.01.T01:intron 40.0%
AGACTCCAAATGGTGCAAAG+TGG + Chr7:42310896-42310915 MsG0780038222.01.T01:CDS 45.0%
ATGGGCCTTAGAGATATTGG+GGG - Chr7:42310262-42310281 None:intergenic 45.0%
CAAAGAGTTGCAGCGCAAAA+TGG + Chr7:42311093-42311112 MsG0780038222.01.T01:intron 45.0%
CACATGCGGTAGATAACTAC+CGG + Chr7:42310332-42310351 MsG0780038222.01.T01:intron 45.0%
CAGCGCAAAATGGTCTCTAA+TGG + Chr7:42311103-42311122 MsG0780038222.01.T01:intron 45.0%
CTAAGCCCCCAATATCTCTA+AGG + Chr7:42310254-42310273 MsG0780038222.01.T01:intron 45.0%
CTAATCAGGATGACCCTTAC+AGG + Chr7:42311930-42311949 MsG0780038222.01.T01:CDS 45.0%
CTGTAAGGGTCATCCTGATT+AGG - Chr7:42311932-42311951 None:intergenic 45.0%
GGGAAGTTAGTGATATTGGG+GGG + Chr7:42310367-42310386 MsG0780038222.01.T01:intron 45.0%
GGGGAAGTTAGTGATATTGG+GGG + Chr7:42310366-42310385 MsG0780038222.01.T01:intron 45.0%
GTGCAGCCTGTTTACTCATT+CGG + Chr7:42310423-42310442 MsG0780038222.01.T01:intron 45.0%
TGCAACTTACCAGACGACAA+CGG - Chr7:42311513-42311532 None:intergenic 45.0%
TGCATGAGTTAACTCACGCA+GGG - Chr7:42310560-42310579 None:intergenic 45.0%
TGGATGGAAGACATTTGCAG+AGG + Chr7:42311974-42311993 MsG0780038222.01.T01:CDS 45.0%
! ACTAACTTGTCCAAGCCAAG+TGG - Chr7:42310450-42310469 None:intergenic 45.0%
! CATTTTGCGCTGCAACTCTT+TGG - Chr7:42311095-42311114 None:intergenic 45.0%
! CTAACTTGTCCAAGCCAAGT+GGG - Chr7:42310449-42310468 None:intergenic 45.0%
! GTTGGTCATAGTTTGTGGGT+CGG + Chr7:42309922-42309941 MsG0780038222.01.T01:intron 45.0%
!! ATCCATCCTTTGTTGTTGCC+CGG + Chr7:42311472-42311491 MsG0780038222.01.T01:intron 45.0%
!!! TAACTCACGCAGGGGTATTT+TGG - Chr7:42310551-42310570 None:intergenic 45.0%
AGTGGGCCGAATGAGTAAAC+AGG - Chr7:42310432-42310451 None:intergenic 50.0%
CTGCATGAGTTAACTCACGC+AGG - Chr7:42310561-42310580 None:intergenic 50.0%
CTGCGTAACTTAACTCACGC+TGG - Chr7:42310612-42310631 None:intergenic 50.0%
CTTCTCCCAACACATTTCGC+TGG - Chr7:42310713-42310732 None:intergenic 50.0%
CTTGGACAAGTTAGTTCGGC+CGG + Chr7:42310455-42310474 MsG0780038222.01.T01:intron 50.0%
GCATGAGTTAACTCACGCAG+GGG - Chr7:42310559-42310578 None:intergenic 50.0%
GGGAGCGAGCAATAACAGTT+GGG - Chr7:42310517-42310536 None:intergenic 50.0%
GTTTACTCATTCGGCCCACT+TGG + Chr7:42310432-42310451 MsG0780038222.01.T01:intron 50.0%
TGGGAGCGAGCAATAACAGT+TGG - Chr7:42310518-42310537 None:intergenic 50.0%
TGTTATTGCTCGCTCCCAAC+TGG + Chr7:42310520-42310539 MsG0780038222.01.T01:intron 50.0%
! GGCCTGCAAAGTACCTAATC+AGG + Chr7:42311916-42311935 MsG0780038222.01.T01:CDS 50.0%
! TGCGCTGCAACTCTTTGGAA+AGG - Chr7:42311090-42311109 None:intergenic 50.0%
ACGTTGACACCGTTGTCGTC+TGG + Chr7:42311501-42311520 MsG0780038222.01.T01:intron 55.0%
ATGACGCCGGGCAACAACAA+AGG - Chr7:42311481-42311500 None:intergenic 55.0%
! ACGGTGTCAACGTATGACGC+CGG - Chr7:42311494-42311513 None:intergenic 55.0%
CATGCTGGCAGAGAGTCCAG+AGG + Chr7:42311230-42311249 MsG0780038222.01.T01:intron 60.0%
CGCCGGGCAACAACAAAGGA+TGG - Chr7:42311477-42311496 None:intergenic 60.0%
CTCATTCGGCCCACTTGGCT+TGG + Chr7:42310437-42310456 MsG0780038222.01.T01:intron 60.0%
GGGCGCCAGCGAAATGTGTT+GGG + Chr7:42310705-42310724 MsG0780038222.01.T01:intron 60.0%
TGGGCGCCAGCGAAATGTGT+TGG + Chr7:42310704-42310723 MsG0780038222.01.T01:intron 60.0%
! CGGTGTCAACGTATGACGCC+GGG - Chr7:42311493-42311512 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 42309643 42312237 42309643 ID=MsG0780038222.01;Name=MsG0780038222.01
Chr7 mRNA 42309643 42312237 42309643 ID=MsG0780038222.01.T01;Parent=MsG0780038222.01;Name=MsG0780038222.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|0.33|0.25|4|0|206
Chr7 exon 42309643 42309723 42309643 ID=MsG0780038222.01.T01:exon:8141;Parent=MsG0780038222.01.T01
Chr7 exon 42310835 42311047 42310835 ID=MsG0780038222.01.T01:exon:8142;Parent=MsG0780038222.01.T01
Chr7 exon 42311831 42312119 42311831 ID=MsG0780038222.01.T01:exon:8143;Parent=MsG0780038222.01.T01
Chr7 exon 42312200 42312237 42312200 ID=MsG0780038222.01.T01:exon:8144;Parent=MsG0780038222.01.T01
Chr7 CDS 42309643 42309723 42309643 ID=MsG0780038222.01.T01:cds;Parent=MsG0780038222.01.T01
Chr7 CDS 42310835 42311047 42310835 ID=MsG0780038222.01.T01:cds;Parent=MsG0780038222.01.T01
Chr7 CDS 42311831 42312119 42311831 ID=MsG0780038222.01.T01:cds;Parent=MsG0780038222.01.T01
Chr7 CDS 42312200 42312237 42312200 ID=MsG0780038222.01.T01:cds;Parent=MsG0780038222.01.T01
Gene Sequence

>MsG0780038222.01.T01

ATGGCTAGTGAAACTTCTGAGGTGAAGCCAATCCACTTTTTCAAGATAATACTTGCTCAAAATCTTCATGCAGAAAAGCTTATGATACCAAGAAAGTTTGTGGAGAAATATGGAAAAGTTTTATCAAATACTATATATCTAAAGACTCCAAATGGTGCAAAGTGGAAATTAAATTTGGTAAATAGTGATGGCAAAATATTCTTTGAAAAGGGTTGGAAAGAATTTGCAGAGTATCATTCTCTAGCTCATGGCCATCTTGTGCTTTTCAGATATGAAAAAACATCTCTTTTTGAGAATATACCACGTACGTTTGGTAATAGACACTTTGATTTGGATAAGAAGAGAGGAGATGTTTATTTGTTGTTAAATGAAGGAATTTGGCCTGCAAAGTACCTAATCAGGATGACCCTTACAGGACCACAAATTGATCTCACAGTTGGATGGAAGACATTTGCAGAGGACAATAACTTGAAAGTTGGCGATATTTGCAAATTTGAGCTCATCTCCAGCACTATACTTACCTTCATTGTGCACATCTTTAGAGAGACTGACAATGACAACACCAATTGTTCAGCATCACAAAAATCTTCCCGAGTGAAAGAAGAAGCTTCTCAAGGATAG
Protein sequence

>MsG0780038222.01.T01

MASETSEVKPIHFFKIILAQNLHAEKLMIPRKFVEKYGKVLSNTIYLKTPNGAKWKLNLVNSDGKIFFEKGWKEFAEYHSLAHGHLVLFRYEKTSLFENIPRTFGNRHFDLDKKRGDVYLLLNEGIWPAKYLIRMTLTGPQIDLTVGWKTFAEDNNLKVGDICKFELISSTILTFIVHIFRETDNDNTNCSASQKSSRVKEEASQG*