Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038385.01.T01 | AES77546.1 | 91.964 | 112 | 9 | 0 | 12 | 123 | 32 | 143 | 1.08E-69 | 216 |
MsG0780038385.01.T03 | AES77546.1 | 92.079 | 101 | 8 | 0 | 2 | 102 | 43 | 143 | 1.87E-61 | 194 |
MsG0780038385.01.T02 | AES77546.1 | 91.964 | 112 | 9 | 0 | 4 | 115 | 32 | 143 | 1.21E-69 | 216 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038385.01.T01 | Q9FJK3 | 42.478 | 113 | 64 | 1 | 12 | 123 | 32 | 144 | 1.62E-21 | 90.1 |
MsG0780038385.01.T02 | Q9FJK3 | 42.478 | 113 | 64 | 1 | 4 | 115 | 32 | 144 | 9.83E-22 | 90.5 |
MsG0780038385.01.T03 | Q9FJK3 | 39.806 | 103 | 61 | 1 | 1 | 102 | 42 | 144 | 2.53E-16 | 75.5 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038385.01.T01 | G7L356 | 91.964 | 112 | 9 | 0 | 12 | 123 | 32 | 143 | 5.16e-70 | 216 |
MsG0780038385.01.T02 | G7L356 | 91.964 | 112 | 9 | 0 | 4 | 115 | 32 | 143 | 5.77e-70 | 216 |
MsG0780038385.01.T03 | G7L356 | 92.079 | 101 | 8 | 0 | 2 | 102 | 43 | 143 | 8.93e-62 | 194 |
Gene ID | Type | Classification |
---|---|---|
MsG0780038385.01.T02 | TF | MADS-M-type |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038385.01.T01 | MTR_7g011950 | 91.964 | 112 | 9 | 0 | 12 | 123 | 32 | 143 | 1.31e-73 | 216 |
MsG0780038385.01.T01 | MTR_4g028720 | 88.393 | 112 | 13 | 0 | 12 | 123 | 32 | 143 | 1.98e-70 | 208 |
MsG0780038385.01.T01 | MTR_1g077320 | 81.250 | 112 | 21 | 0 | 12 | 123 | 32 | 143 | 2.27e-64 | 193 |
MsG0780038385.01.T01 | MTR_1g084950 | 74.107 | 112 | 29 | 0 | 12 | 123 | 32 | 143 | 3.05e-56 | 172 |
MsG0780038385.01.T01 | MTR_5g047580 | 68.033 | 122 | 39 | 0 | 3 | 124 | 23 | 144 | 1.28e-55 | 171 |
MsG0780038385.01.T01 | MTR_1g077300 | 72.321 | 112 | 29 | 1 | 12 | 123 | 32 | 141 | 6.47e-53 | 164 |
MsG0780038385.01.T01 | MTR_1g077390 | 64.706 | 119 | 42 | 0 | 5 | 123 | 25 | 143 | 9.19e-51 | 158 |
MsG0780038385.01.T01 | MTR_5g047560 | 66.667 | 102 | 34 | 0 | 23 | 124 | 27 | 128 | 5.01e-44 | 140 |
MsG0780038385.01.T01 | MTR_1g090783 | 52.941 | 119 | 56 | 0 | 5 | 123 | 24 | 142 | 5.75e-39 | 128 |
MsG0780038385.01.T01 | MTR_1g090697 | 50.407 | 123 | 61 | 0 | 1 | 123 | 21 | 143 | 8.34e-39 | 128 |
MsG0780038385.01.T01 | MTR_1g090710 | 49.167 | 120 | 60 | 1 | 5 | 123 | 25 | 144 | 2.16e-36 | 122 |
MsG0780038385.01.T01 | MTR_4g032620 | 37.815 | 119 | 72 | 2 | 7 | 123 | 27 | 145 | 4.64e-26 | 97.8 |
MsG0780038385.01.T01 | MTR_3g065100 | 41.593 | 113 | 65 | 1 | 12 | 123 | 32 | 144 | 1.13e-24 | 94.4 |
MsG0780038385.01.T01 | MTR_3g466980 | 38.710 | 124 | 75 | 1 | 1 | 123 | 21 | 144 | 5.66e-24 | 92.0 |
MsG0780038385.01.T01 | MTR_3g466830 | 37.500 | 112 | 69 | 1 | 7 | 117 | 26 | 137 | 7.10e-20 | 80.1 |
MsG0780038385.01.T01 | MTR_3g466900 | 38.318 | 107 | 65 | 1 | 12 | 117 | 2 | 108 | 3.97e-19 | 77.4 |
MsG0780038385.01.T01 | MTR_4g032260 | 35.398 | 113 | 71 | 2 | 12 | 122 | 32 | 144 | 9.25e-19 | 77.0 |
MsG0780038385.01.T01 | MTR_5g075380 | 29.661 | 118 | 82 | 1 | 6 | 122 | 26 | 143 | 1.45e-18 | 76.6 |
MsG0780038385.01.T01 | MTR_4g032290 | 35.398 | 113 | 71 | 2 | 12 | 122 | 32 | 144 | 4.97e-18 | 76.6 |
MsG0780038385.01.T01 | MTR_4g031910 | 33.628 | 113 | 73 | 2 | 12 | 122 | 32 | 144 | 2.23e-17 | 75.1 |
MsG0780038385.01.T01 | MTR_8g036130 | 33.607 | 122 | 77 | 2 | 6 | 123 | 26 | 147 | 1.19e-16 | 73.6 |
MsG0780038385.01.T01 | MTR_3g466890 | 34.862 | 109 | 70 | 1 | 10 | 117 | 29 | 137 | 1.69e-16 | 71.2 |
MsG0780038385.01.T01 | MTR_3g466930 | 34.579 | 107 | 69 | 1 | 12 | 117 | 2 | 108 | 4.98e-16 | 69.3 |
MsG0780038385.01.T01 | MTR_4g063790 | 30.645 | 124 | 84 | 2 | 1 | 122 | 21 | 144 | 1.40e-15 | 69.3 |
MsG0780038385.01.T01 | MTR_2g035580 | 34.483 | 116 | 75 | 1 | 7 | 121 | 27 | 142 | 6.31e-15 | 67.0 |
MsG0780038385.01.T01 | MTR_3g467080 | 30.645 | 124 | 84 | 2 | 1 | 122 | 21 | 144 | 7.14e-15 | 67.0 |
MsG0780038385.01.T01 | MTR_3g465410 | 32.759 | 116 | 76 | 2 | 9 | 122 | 1 | 116 | 9.32e-15 | 66.2 |
MsG0780038385.01.T01 | MTR_3g031100 | 33.065 | 124 | 79 | 3 | 1 | 121 | 21 | 143 | 1.40e-13 | 65.1 |
MsG0780038385.01.T01 | MTR_2g035610 | 33.333 | 87 | 57 | 1 | 12 | 97 | 32 | 118 | 1.44e-13 | 62.8 |
MsG0780038385.01.T01 | MTR_3g031240 | 37.895 | 95 | 58 | 1 | 7 | 100 | 27 | 121 | 4.19e-13 | 62.8 |
MsG0780038385.01.T01 | MTR_2g016210 | 34.188 | 117 | 75 | 2 | 7 | 121 | 27 | 143 | 4.46e-13 | 63.9 |
MsG0780038385.01.T01 | MTR_4g028800 | 39.216 | 51 | 31 | 0 | 3 | 53 | 21 | 71 | 1.88e-12 | 58.5 |
MsG0780038385.01.T01 | MTR_7g055800 | 32.941 | 85 | 43 | 1 | 11 | 95 | 18 | 88 | 3.10e-11 | 55.8 |
MsG0780038385.01.T03 | MTR_7g011950 | 92.079 | 101 | 8 | 0 | 2 | 102 | 43 | 143 | 2.27e-65 | 194 |
MsG0780038385.01.T03 | MTR_4g028720 | 88.119 | 101 | 12 | 0 | 2 | 102 | 43 | 143 | 2.23e-62 | 187 |
MsG0780038385.01.T03 | MTR_1g077320 | 80.198 | 101 | 20 | 0 | 2 | 102 | 43 | 143 | 5.19e-56 | 171 |
MsG0780038385.01.T03 | MTR_1g084950 | 73.267 | 101 | 27 | 0 | 2 | 102 | 43 | 143 | 1.70e-49 | 154 |
MsG0780038385.01.T03 | MTR_1g077300 | 70.297 | 101 | 28 | 1 | 2 | 102 | 43 | 141 | 6.74e-45 | 142 |
MsG0780038385.01.T03 | MTR_5g047560 | 66.667 | 102 | 34 | 0 | 2 | 103 | 27 | 128 | 1.13e-44 | 141 |
MsG0780038385.01.T03 | MTR_5g047580 | 66.667 | 102 | 34 | 0 | 2 | 103 | 43 | 144 | 3.64e-44 | 140 |
MsG0780038385.01.T03 | MTR_1g077390 | 63.366 | 101 | 37 | 0 | 2 | 102 | 43 | 143 | 4.98e-41 | 132 |
MsG0780038385.01.T03 | MTR_1g090697 | 50.495 | 101 | 50 | 0 | 2 | 102 | 43 | 143 | 1.44e-30 | 106 |
MsG0780038385.01.T03 | MTR_1g090783 | 50.980 | 102 | 50 | 0 | 1 | 102 | 41 | 142 | 8.98e-30 | 104 |
MsG0780038385.01.T03 | MTR_1g090710 | 48.039 | 102 | 52 | 1 | 2 | 102 | 43 | 144 | 4.10e-28 | 100 |
MsG0780038385.01.T03 | MTR_3g065100 | 39.216 | 102 | 61 | 1 | 2 | 102 | 43 | 144 | 3.30e-19 | 79.3 |
MsG0780038385.01.T03 | MTR_4g032620 | 34.951 | 103 | 65 | 2 | 2 | 102 | 43 | 145 | 3.17e-18 | 76.6 |
MsG0780038385.01.T03 | MTR_3g466980 | 38.235 | 102 | 62 | 1 | 2 | 102 | 43 | 144 | 6.95e-16 | 70.1 |
MsG0780038385.01.T03 | MTR_3g466900 | 34.375 | 96 | 62 | 1 | 2 | 96 | 13 | 108 | 9.80e-14 | 62.8 |
MsG0780038385.01.T03 | MTR_4g032260 | 32.353 | 102 | 67 | 2 | 2 | 101 | 43 | 144 | 1.21e-13 | 63.2 |
MsG0780038385.01.T03 | MTR_4g032290 | 32.353 | 102 | 67 | 2 | 2 | 101 | 43 | 144 | 3.39e-13 | 63.2 |
MsG0780038385.01.T03 | MTR_4g031910 | 30.392 | 102 | 69 | 2 | 2 | 101 | 43 | 144 | 2.10e-12 | 60.8 |
MsG0780038385.01.T03 | MTR_3g466830 | 32.292 | 96 | 64 | 1 | 2 | 96 | 42 | 137 | 8.67e-12 | 58.2 |
MsG0780038385.01.T03 | MTR_3g466890 | 31.250 | 96 | 65 | 1 | 2 | 96 | 42 | 137 | 8.95e-12 | 58.2 |
MsG0780038385.01.T03 | MTR_5g075380 | 27.723 | 101 | 72 | 1 | 2 | 101 | 43 | 143 | 1.77e-11 | 57.4 |
MsG0780038385.01.T02 | MTR_7g011950 | 91.964 | 112 | 9 | 0 | 4 | 115 | 32 | 143 | 1.46e-73 | 216 |
MsG0780038385.01.T02 | MTR_4g028720 | 88.393 | 112 | 13 | 0 | 4 | 115 | 32 | 143 | 1.80e-70 | 208 |
MsG0780038385.01.T02 | MTR_1g077320 | 81.250 | 112 | 21 | 0 | 4 | 115 | 32 | 143 | 2.63e-64 | 192 |
MsG0780038385.01.T02 | MTR_1g084950 | 74.107 | 112 | 29 | 0 | 4 | 115 | 32 | 143 | 1.55e-56 | 172 |
MsG0780038385.01.T02 | MTR_5g047580 | 69.828 | 116 | 35 | 0 | 1 | 116 | 29 | 144 | 5.35e-54 | 166 |
MsG0780038385.01.T02 | MTR_1g077300 | 72.321 | 112 | 29 | 1 | 4 | 115 | 32 | 141 | 4.46e-53 | 164 |
MsG0780038385.01.T02 | MTR_1g077390 | 65.217 | 115 | 40 | 0 | 1 | 115 | 29 | 143 | 5.94e-49 | 153 |
MsG0780038385.01.T02 | MTR_5g047560 | 66.667 | 102 | 34 | 0 | 15 | 116 | 27 | 128 | 2.79e-44 | 141 |
MsG0780038385.01.T02 | MTR_1g090697 | 53.043 | 115 | 54 | 0 | 1 | 115 | 29 | 143 | 2.13e-37 | 124 |
MsG0780038385.01.T02 | MTR_1g090783 | 53.043 | 115 | 54 | 0 | 1 | 115 | 28 | 142 | 2.53e-37 | 124 |
MsG0780038385.01.T02 | MTR_1g090710 | 50.000 | 116 | 57 | 1 | 1 | 115 | 29 | 144 | 5.28e-35 | 118 |
MsG0780038385.01.T02 | MTR_3g065100 | 41.593 | 113 | 65 | 1 | 4 | 115 | 32 | 144 | 6.56e-25 | 94.7 |
MsG0780038385.01.T02 | MTR_4g032620 | 37.607 | 117 | 71 | 2 | 1 | 115 | 29 | 145 | 7.48e-25 | 94.4 |
MsG0780038385.01.T02 | MTR_3g466980 | 40.517 | 116 | 68 | 1 | 1 | 115 | 29 | 144 | 1.34e-22 | 88.2 |
MsG0780038385.01.T02 | MTR_3g466830 | 38.182 | 110 | 67 | 1 | 1 | 109 | 28 | 137 | 8.96e-20 | 79.3 |
MsG0780038385.01.T02 | MTR_3g466900 | 38.318 | 107 | 65 | 1 | 4 | 109 | 2 | 108 | 2.47e-19 | 77.4 |
MsG0780038385.01.T02 | MTR_4g032260 | 35.398 | 113 | 71 | 2 | 4 | 114 | 32 | 144 | 6.41e-19 | 77.4 |
MsG0780038385.01.T02 | MTR_4g032290 | 35.398 | 113 | 71 | 2 | 4 | 114 | 32 | 144 | 3.04e-18 | 77.0 |
MsG0780038385.01.T02 | MTR_5g075380 | 30.435 | 115 | 79 | 1 | 1 | 114 | 29 | 143 | 3.94e-18 | 75.1 |
MsG0780038385.01.T02 | MTR_4g031910 | 33.628 | 113 | 73 | 2 | 4 | 114 | 32 | 144 | 1.27e-17 | 75.5 |
MsG0780038385.01.T02 | MTR_3g466890 | 34.862 | 109 | 70 | 1 | 2 | 109 | 29 | 137 | 9.12e-17 | 71.6 |
MsG0780038385.01.T02 | MTR_3g466930 | 34.579 | 107 | 69 | 1 | 4 | 109 | 2 | 108 | 3.53e-16 | 69.3 |
MsG0780038385.01.T02 | MTR_8g036130 | 33.613 | 119 | 75 | 2 | 1 | 115 | 29 | 147 | 1.71e-15 | 70.1 |
MsG0780038385.01.T02 | MTR_3g465410 | 32.759 | 116 | 76 | 2 | 1 | 114 | 1 | 116 | 8.86e-15 | 66.2 |
MsG0780038385.01.T02 | MTR_4g063790 | 31.034 | 116 | 78 | 2 | 1 | 114 | 29 | 144 | 7.25e-14 | 64.3 |
MsG0780038385.01.T02 | MTR_2g035610 | 33.333 | 87 | 57 | 1 | 4 | 89 | 32 | 118 | 7.89e-14 | 63.2 |
MsG0780038385.01.T02 | MTR_2g035580 | 33.628 | 113 | 74 | 1 | 2 | 113 | 30 | 142 | 1.49e-13 | 63.2 |
MsG0780038385.01.T02 | MTR_3g467080 | 31.034 | 116 | 78 | 2 | 1 | 114 | 29 | 144 | 4.11e-13 | 62.4 |
MsG0780038385.01.T02 | MTR_2g016210 | 33.913 | 115 | 74 | 2 | 1 | 113 | 29 | 143 | 6.34e-12 | 60.5 |
MsG0780038385.01.T02 | MTR_3g031240 | 36.559 | 93 | 58 | 1 | 1 | 92 | 29 | 121 | 1.19e-11 | 58.9 |
MsG0780038385.01.T02 | MTR_7g055800 | 32.941 | 85 | 43 | 1 | 3 | 87 | 18 | 88 | 1.94e-11 | 56.2 |
MsG0780038385.01.T02 | MTR_3g031100 | 32.759 | 116 | 74 | 3 | 1 | 113 | 29 | 143 | 2.43e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038385.01.T01 | AT5G27810 | 44.792 | 96 | 52 | 1 | 9 | 103 | 1 | 96 | 8.97e-23 | 86.3 |
MsG0780038385.01.T01 | AT5G48670 | 42.478 | 113 | 64 | 1 | 12 | 123 | 32 | 144 | 1.66e-22 | 90.1 |
MsG0780038385.01.T01 | AT3G05860 | 35.484 | 124 | 79 | 1 | 1 | 123 | 21 | 144 | 2.06e-20 | 82.8 |
MsG0780038385.01.T01 | AT3G05860 | 35.484 | 124 | 79 | 1 | 1 | 123 | 21 | 144 | 1.03e-19 | 81.6 |
MsG0780038385.01.T01 | AT3G05860 | 35.484 | 124 | 79 | 1 | 1 | 123 | 21 | 144 | 1.29e-19 | 81.6 |
MsG0780038385.01.T01 | AT1G65300 | 33.065 | 124 | 82 | 1 | 1 | 123 | 20 | 143 | 8.60e-19 | 79.7 |
MsG0780038385.01.T01 | AT5G26630 | 36.283 | 113 | 71 | 1 | 12 | 123 | 32 | 144 | 2.78e-18 | 77.4 |
MsG0780038385.01.T01 | AT5G26650 | 34.746 | 118 | 76 | 1 | 5 | 121 | 23 | 140 | 2.49e-16 | 73.9 |
MsG0780038385.01.T01 | AT1G65330 | 32.258 | 124 | 83 | 1 | 1 | 123 | 20 | 143 | 4.33e-16 | 72.4 |
MsG0780038385.01.T01 | AT5G27960 | 39.130 | 92 | 55 | 1 | 7 | 97 | 25 | 116 | 3.79e-15 | 70.1 |
MsG0780038385.01.T01 | AT1G31640 | 33.898 | 118 | 76 | 2 | 1 | 117 | 20 | 136 | 2.50e-14 | 68.6 |
MsG0780038385.01.T01 | AT1G22590 | 37.500 | 72 | 38 | 1 | 1 | 65 | 21 | 92 | 1.41e-13 | 63.9 |
MsG0780038385.01.T01 | AT2G28700 | 35.065 | 77 | 49 | 1 | 1 | 76 | 21 | 97 | 6.16e-13 | 64.3 |
MsG0780038385.01.T01 | AT1G31630 | 28.455 | 123 | 86 | 2 | 1 | 122 | 20 | 141 | 7.92e-12 | 61.2 |
MsG0780038385.01.T03 | AT5G48670 | 39.806 | 103 | 61 | 1 | 1 | 102 | 42 | 144 | 2.58e-17 | 75.5 |
MsG0780038385.01.T03 | AT5G27810 | 40.964 | 83 | 48 | 1 | 1 | 82 | 14 | 96 | 1.24e-15 | 67.4 |
MsG0780038385.01.T03 | AT5G26630 | 35.000 | 100 | 64 | 1 | 4 | 102 | 45 | 144 | 1.45e-13 | 63.9 |
MsG0780038385.01.T03 | AT1G65300 | 32.353 | 102 | 68 | 1 | 2 | 102 | 42 | 143 | 2.70e-12 | 61.2 |
MsG0780038385.01.T03 | AT3G05860 | 34.314 | 102 | 66 | 1 | 2 | 102 | 43 | 144 | 1.71e-11 | 58.2 |
MsG0780038385.01.T03 | AT3G05860 | 34.314 | 102 | 66 | 1 | 2 | 102 | 43 | 144 | 4.98e-11 | 57.8 |
MsG0780038385.01.T03 | AT3G05860 | 34.314 | 102 | 66 | 1 | 2 | 102 | 43 | 144 | 5.22e-11 | 57.4 |
MsG0780038385.01.T02 | AT5G27810 | 44.792 | 96 | 52 | 1 | 1 | 95 | 1 | 96 | 7.48e-23 | 86.3 |
MsG0780038385.01.T02 | AT5G48670 | 42.478 | 113 | 64 | 1 | 4 | 115 | 32 | 144 | 1.00e-22 | 90.5 |
MsG0780038385.01.T02 | AT3G05860 | 37.069 | 116 | 72 | 1 | 1 | 115 | 29 | 144 | 3.77e-19 | 79.0 |
MsG0780038385.01.T02 | AT5G26630 | 36.283 | 113 | 71 | 1 | 4 | 115 | 32 | 144 | 1.48e-18 | 77.8 |
MsG0780038385.01.T02 | AT3G05860 | 37.069 | 116 | 72 | 1 | 1 | 115 | 29 | 144 | 1.72e-18 | 78.2 |
MsG0780038385.01.T02 | AT3G05860 | 37.069 | 116 | 72 | 1 | 1 | 115 | 29 | 144 | 2.10e-18 | 78.2 |
MsG0780038385.01.T02 | AT1G65300 | 34.783 | 115 | 74 | 1 | 2 | 115 | 29 | 143 | 8.73e-18 | 76.6 |
MsG0780038385.01.T02 | AT1G65330 | 33.621 | 116 | 76 | 1 | 1 | 115 | 28 | 143 | 5.66e-15 | 68.9 |
MsG0780038385.01.T02 | AT5G26650 | 34.211 | 114 | 74 | 1 | 1 | 113 | 27 | 140 | 1.12e-14 | 68.9 |
MsG0780038385.01.T02 | AT5G27960 | 34.545 | 110 | 71 | 1 | 1 | 109 | 27 | 136 | 1.16e-13 | 65.9 |
MsG0780038385.01.T02 | AT1G31640 | 34.862 | 109 | 69 | 2 | 2 | 109 | 29 | 136 | 2.07e-13 | 65.5 |
MsG0780038385.01.T02 | AT1G22590 | 40.625 | 64 | 31 | 1 | 1 | 57 | 29 | 92 | 8.65e-12 | 58.9 |
MsG0780038385.01.T02 | AT2G28700 | 36.232 | 69 | 43 | 1 | 1 | 68 | 29 | 97 | 7.24e-11 | 58.2 |
Find 19 sgRNAs with CRISPR-Local
Find 16 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCAGAACATTCTTATGTTT+TGG | 0.267458 | 7:-45540937 | MsG0780038385.01.T01:CDS |
TGTTTGGCTTCCTTTAGATT+TGG | 0.353502 | 7:+45541094 | None:intergenic |
TACCTTCTTCCTCCTCTTGT+AGG | 0.353982 | 7:+45541209 | None:intergenic |
ATACCTCTCAATCACCTGTT+TGG | 0.354870 | 7:+45541078 | None:intergenic |
TTTGCAAAAGGAAACTTTCT+CGG | 0.420759 | 7:+45541017 | None:intergenic |
AAATCTAAAGGAAGCCAAAC+AGG | 0.425294 | 7:-45541092 | MsG0780038385.01.T01:CDS |
TCAGAAACAGTCACATCATC+TGG | 0.447805 | 7:+45540893 | None:intergenic |
CTTTAGTAATCATTTGCAAA+AGG | 0.449651 | 7:+45541005 | None:intergenic |
TGTTTCTGATTTGAAAGACT+TGG | 0.473410 | 7:-45540879 | MsG0780038385.01.T01:CDS |
GCAAATGATTACTAAAGCTA+CGG | 0.498143 | 7:-45540999 | MsG0780038385.01.T01:CDS |
ACCTCTGTTTCAGAATCAAA+AGG | 0.516061 | 7:+45541121 | None:intergenic |
AGAGGTGTGGCCAAATCTAA+AGG | 0.522555 | 7:-45541104 | MsG0780038385.01.T01:CDS |
AGAGAACTCACTATTCTTTG+TGG | 0.526508 | 7:-45541172 | MsG0780038385.01.T01:CDS |
GGAAGAAGGTATCATCAAGA+AGG | 0.577634 | 7:-45541197 | MsG0780038385.01.T01:CDS |
ATCCTACAAGAGGAGGAAGA+AGG | 0.602209 | 7:-45541211 | MsG0780038385.01.T01:CDS |
TTGATTCTGAAACAGAGGTG+TGG | 0.630350 | 7:-45541117 | MsG0780038385.01.T01:CDS |
AAGCCAAACAGGTGATTGAG+AGG | 0.637552 | 7:-45541081 | MsG0780038385.01.T01:CDS |
GTGTTACATCCTACAAGAGG+AGG | 0.676042 | 7:-45541218 | None:intergenic |
TGGGTGTTACATCCTACAAG+AGG | 0.682620 | 7:-45541221 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | CTTTAGTAATCATTTGCAAA+AGG | + | Chr7:45541062-45541081 | None:intergenic | 25.0% |
GCAAATGATTACTAAAGCTA+CGG | - | Chr7:45541065-45541084 | MsG0780038385.01.T01:CDS | 30.0% | |
TTTGCAAAAGGAAACTTTCT+CGG | + | Chr7:45541050-45541069 | None:intergenic | 30.0% | |
! | AGCAGAACATTCTTATGTTT+TGG | - | Chr7:45541127-45541146 | MsG0780038385.01.T01:CDS | 30.0% |
! | TGTTTCTGATTTGAAAGACT+TGG | - | Chr7:45541185-45541204 | MsG0780038385.01.T01:CDS | 30.0% |
AAATCTAAAGGAAGCCAAAC+AGG | - | Chr7:45540972-45540991 | MsG0780038385.01.T01:CDS | 35.0% | |
ACCTCTGTTTCAGAATCAAA+AGG | + | Chr7:45540946-45540965 | None:intergenic | 35.0% | |
AGAGAACTCACTATTCTTTG+TGG | - | Chr7:45540892-45540911 | MsG0780038385.01.T01:CDS | 35.0% | |
! | TGTTTGGCTTCCTTTAGATT+TGG | + | Chr7:45540973-45540992 | None:intergenic | 35.0% |
!!! | TCCTTTTGATTCTGAAACAG+AGG | - | Chr7:45540942-45540961 | MsG0780038385.01.T01:CDS | 35.0% |
ATACCTCTCAATCACCTGTT+TGG | + | Chr7:45540989-45541008 | None:intergenic | 40.0% | |
TCAGAAACAGTCACATCATC+TGG | + | Chr7:45541174-45541193 | None:intergenic | 40.0% | |
!! | GGAAGAAGGTATCATCAAGA+AGG | - | Chr7:45540867-45540886 | MsG0780038385.01.T01:CDS | 40.0% |
!! | TTGATTCTGAAACAGAGGTG+TGG | - | Chr7:45540947-45540966 | MsG0780038385.01.T01:CDS | 40.0% |
AAGCCAAACAGGTGATTGAG+AGG | - | Chr7:45540983-45541002 | MsG0780038385.01.T01:CDS | 45.0% | |
! | AGAGGTGTGGCCAAATCTAA+AGG | - | Chr7:45540960-45540979 | MsG0780038385.01.T01:CDS | 45.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 45540856 | 45541230 | 45540856 | ID=MsG0780038385.01;Name=MsG0780038385.01 |
Chr7 | mRNA | 45540856 | 45541230 | 45540856 | ID=MsG0780038385.01.T01;Parent=MsG0780038385.01;Name=MsG0780038385.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|124 |
Chr7 | exon | 45540856 | 45541230 | 45540856 | ID=MsG0780038385.01.T01:exon:4218;Parent=MsG0780038385.01.T01 |
Chr7 | CDS | 45540856 | 45541230 | 45540856 | ID=MsG0780038385.01.T01:cds;Parent=MsG0780038385.01.T01 |
Chr7 | mRNA | 45540856 | 45541206 | 45540856 | ID=MsG0780038385.01.T02;Parent=MsG0780038385.01;Name=MsG0780038385.01.T02;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|116 |
Chr7 | exon | 45540856 | 45541206 | 45540856 | ID=MsG0780038385.01.T02:exon:4219;Parent=MsG0780038385.01.T02 |
Chr7 | CDS | 45540856 | 45541206 | 45540856 | ID=MsG0780038385.01.T02:cds;Parent=MsG0780038385.01.T02 |
Chr7 | mRNA | 45540856 | 45541167 | 45540856 | ID=MsG0780038385.01.T03;Parent=MsG0780038385.01;Name=MsG0780038385.01.T03;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|103 |
Chr7 | exon | 45540856 | 45541167 | 45540856 | ID=MsG0780038385.01.T03:exon:4220;Parent=MsG0780038385.01.T03 |
Chr7 | CDS | 45540856 | 45541167 | 45540856 | ID=MsG0780038385.01.T03:cds;Parent=MsG0780038385.01.T03 |
Gene Sequence |
Protein sequence |