AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038569.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038569.01.T01 MTR_7g057230 82.881 479 46 1 1 443 179 657 0.0 798
MsG0780038569.01.T01 MTR_6g047750 54.233 378 153 6 77 442 292 661 2.64e-132 396
MsG0780038569.01.T01 MTR_4g074310 63.043 230 51 3 82 311 1 196 9.86e-90 272
MsG0780038569.01.T01 MTR_3g089055 38.009 442 250 10 13 442 135 564 1.38e-81 262
MsG0780038569.01.T01 MTR_3g089055 38.009 442 250 10 13 442 140 569 1.69e-81 262
MsG0780038569.01.T01 MTR_4g074320 65.957 188 28 1 61 212 1 188 1.21e-77 239
MsG0780038569.01.T01 MTR_1g029420 38.140 430 248 9 24 442 169 591 1.59e-77 252
MsG0780038569.01.T01 MTR_2g082090 34.031 382 238 5 70 442 202 578 2.11e-63 214
MsG0780038569.01.T01 MTR_4g133660 33.766 385 238 7 69 442 164 542 1.67e-62 211
MsG0780038569.01.T01 MTR_3g056110 33.626 342 213 6 108 442 207 541 2.79e-57 197
MsG0780038569.01.T01 MTR_5g097480 31.616 427 268 9 34 442 123 543 8.45e-57 196
MsG0780038569.01.T01 MTR_5g094450 32.808 381 232 10 78 442 159 531 3.95e-55 191
MsG0780038569.01.T01 MTR_2g026250 31.122 392 245 9 66 442 214 595 1.73e-52 186
MsG0780038569.01.T01 MTR_8g442410 30.088 339 212 8 120 442 195 524 5.80e-35 136
MsG0780038569.01.T01 MTR_3g065980 31.392 309 183 7 153 442 241 539 8.57e-34 133
MsG0780038569.01.T01 MTR_7g027190 31.104 299 181 8 151 442 392 672 8.78e-33 131
MsG0780038569.01.T01 MTR_4g102790 33.585 265 159 9 188 442 404 661 2.73e-29 121
MsG0780038569.01.T01 MTR_4g104020 28.618 304 205 6 143 442 224 519 6.80e-29 119
MsG0780038569.01.T01 MTR_4g064160 26.741 359 244 7 96 442 332 683 7.67e-29 120
MsG0780038569.01.T01 MTR_4g064200 28.425 292 191 7 161 442 366 649 1.96e-27 115
MsG0780038569.01.T01 MTR_2g097350 27.526 287 197 5 161 442 359 639 6.64e-26 110
MsG0780038569.01.T01 MTR_4g077760 36.515 241 134 9 161 395 276 503 6.18e-25 107
MsG0780038569.01.T01 MTR_2g097310 26.389 288 201 5 161 443 357 638 9.87e-25 107
MsG0780038569.01.T01 MTR_2g097410 26.531 294 194 7 161 442 457 740 1.21e-24 107
MsG0780038569.01.T01 MTR_4g097080 27.431 288 189 6 165 442 225 502 1.41e-24 106
MsG0780038569.01.T01 MTR_4g064150 23.418 316 228 6 136 443 424 733 3.74e-24 105
MsG0780038569.01.T01 MTR_7g109580 27.799 259 179 3 188 442 299 553 9.97e-24 104
MsG0780038569.01.T01 MTR_2g097380 27.113 284 187 7 161 442 295 560 1.06e-23 104
MsG0780038569.01.T01 MTR_7g062120 24.407 295 198 6 161 442 457 739 1.93e-23 103
MsG0780038569.01.T01 MTR_4g064180 23.962 313 224 6 136 440 317 623 2.42e-23 103
MsG0780038569.01.T01 MTR_2g097390 25.436 287 203 5 161 442 360 640 3.16e-23 102
MsG0780038569.01.T01 MTR_2g097463 26.909 275 181 5 181 442 387 654 7.97e-23 101
MsG0780038569.01.T01 MTR_4g064120 23.003 313 227 6 136 440 317 623 3.44e-22 99.8
MsG0780038569.01.T01 MTR_2g097473 26.619 278 181 6 181 442 383 653 4.44e-22 99.4
MsG0780038569.01.T01 MTR_3g022830 26.608 342 190 9 154 442 102 435 8.22e-22 97.8
MsG0780038569.01.T01 MTR_2g034260 30.996 271 170 8 182 442 320 583 2.02e-21 97.4
MsG0780038569.01.T01 MTR_2g034250 28.966 290 192 6 162 442 300 584 2.58e-21 97.1
MsG0780038569.01.T01 MTR_7g074650 27.742 310 203 9 137 442 499 791 3.86e-21 97.1
MsG0780038569.01.T01 MTR_2g097467 25.436 287 192 6 170 442 375 653 4.06e-21 96.7
MsG0780038569.01.T01 MTR_2g034280 27.682 289 198 5 161 442 290 574 9.01e-21 95.5
MsG0780038569.01.T01 MTR_5g015490 26.552 290 195 8 165 442 206 489 1.73e-18 88.2
MsG0780038569.01.T01 MTR_4g076020 27.682 289 170 12 161 442 172 428 2.60e-18 87.0
MsG0780038569.01.T01 MTR_1g069725 26.667 300 198 9 149 442 179 462 1.92e-17 84.7
MsG0780038569.01.T01 MTR_4g076140 34.667 150 93 3 297 442 320 468 5.43e-17 83.6
MsG0780038569.01.T01 MTR_5g009080 36.184 152 88 4 297 442 329 477 1.05e-16 82.4
MsG0780038569.01.T01 MTR_1g096030 24.810 395 247 12 81 442 81 458 3.44e-16 80.9
MsG0780038569.01.T01 MTR_5g015950 25.000 320 196 7 161 442 132 445 4.53e-16 80.5
MsG0780038569.01.T01 MTR_3g053270 25.000 320 196 7 161 442 132 445 4.53e-16 80.5
MsG0780038569.01.T01 MTR_2g089100 21.975 405 258 13 81 442 53 442 5.87e-15 77.0
MsG0780038569.01.T01 MTR_4g026485 24.800 375 248 12 81 442 270 623 6.53e-14 74.3
MsG0780038569.01.T01 MTR_1g086970 24.265 272 197 4 175 442 211 477 4.11e-13 71.2
MsG0780038569.01.T01 MTR_2g099110 28.910 211 134 5 165 371 166 364 2.74e-11 65.5
MsG0780038569.01.T01 MTR_4g095500 23.265 245 158 3 228 442 223 467 3.12e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038569.01.T01 AT5G52510 45.495 455 188 11 37 442 196 639 9.18e-117 355
MsG0780038569.01.T01 AT1G21450 35.154 421 251 7 33 442 183 592 1.92e-70 234
MsG0780038569.01.T01 AT5G48150 36.127 346 198 8 109 442 155 489 1.44e-60 205
MsG0780038569.01.T01 AT5G48150 36.127 346 198 8 109 442 155 489 1.44e-60 205
MsG0780038569.01.T01 AT5G48150 36.127 346 198 8 109 442 155 489 1.44e-60 205
MsG0780038569.01.T01 AT5G48150 36.127 346 198 8 109 442 155 489 1.44e-60 205
MsG0780038569.01.T01 AT2G04890 32.620 374 231 8 78 442 51 412 5.49e-58 196
MsG0780038569.01.T01 AT1G50600 33.913 345 206 7 109 442 192 525 4.18e-55 191
MsG0780038569.01.T01 AT4G17230 32.361 377 235 7 78 442 156 524 8.00e-55 191
MsG0780038569.01.T01 AT4G17230 32.361 377 235 7 78 442 156 524 8.00e-55 191
MsG0780038569.01.T01 AT1G50600 33.913 345 206 7 109 442 267 600 1.52e-54 191
MsG0780038569.01.T01 AT1G50600 33.913 345 206 7 109 442 263 596 1.70e-54 191
MsG0780038569.01.T01 AT3G03450 33.564 289 177 6 160 442 265 544 1.28e-36 141
MsG0780038569.01.T01 AT1G66350 31.788 302 185 9 147 442 219 505 5.44e-36 139
MsG0780038569.01.T01 AT5G17490 31.864 295 186 7 153 442 231 515 1.07e-32 130
MsG0780038569.01.T01 AT3G50650 32.550 298 175 6 161 442 254 541 1.53e-32 130
MsG0780038569.01.T01 AT1G14920 32.302 291 177 9 160 442 250 528 1.62e-30 124
MsG0780038569.01.T01 AT2G01570 32.646 291 176 8 160 442 302 580 2.28e-30 124
MsG0780038569.01.T01 AT5G66770 35.270 241 142 5 161 395 300 532 3.93e-30 123
MsG0780038569.01.T01 AT2G29065 25.132 378 266 8 81 443 253 628 4.59e-29 120
MsG0780038569.01.T01 AT2G29060 26.207 290 202 5 161 442 369 654 1.60e-27 115
MsG0780038569.01.T01 AT2G29060 26.207 290 202 5 161 442 406 691 1.67e-27 115
MsG0780038569.01.T01 AT1G07530 25.597 293 208 4 157 442 475 764 1.75e-27 116
MsG0780038569.01.T01 AT2G37650 24.274 379 256 8 81 442 336 700 4.14e-25 108
MsG0780038569.01.T01 AT2G37650 24.274 379 256 8 81 442 348 712 4.49e-25 108
MsG0780038569.01.T01 AT5G59450 26.471 340 222 11 121 442 268 597 6.28e-24 105
MsG0780038569.01.T01 AT3G46600 26.552 290 196 6 162 442 89 370 2.34e-23 101
MsG0780038569.01.T01 AT1G50420 25.170 441 231 14 81 442 58 478 4.34e-23 102
MsG0780038569.01.T01 AT1G07520 25.170 294 200 7 162 443 244 529 4.89e-23 102
MsG0780038569.01.T01 AT1G07520 25.170 294 200 7 162 443 244 529 4.89e-23 102
MsG0780038569.01.T01 AT1G07520 25.170 294 200 7 162 443 409 694 5.30e-23 102
MsG0780038569.01.T01 AT4G37650 24.878 410 262 12 62 442 136 528 5.47e-23 102
MsG0780038569.01.T01 AT1G07520 25.170 294 200 7 162 443 408 693 5.80e-23 102
MsG0780038569.01.T01 AT3G46600 26.552 290 196 6 162 442 297 578 1.13e-22 101
MsG0780038569.01.T01 AT3G46600 26.552 290 196 6 162 442 265 546 1.45e-22 100
MsG0780038569.01.T01 AT3G54220 27.931 290 188 9 157 442 377 649 2.28e-20 94.4
MsG0780038569.01.T01 AT1G63100 31.905 210 137 5 188 396 388 592 5.51e-20 93.2
MsG0780038569.01.T01 AT1G63100 31.905 210 137 5 188 396 363 567 6.90e-20 92.8
MsG0780038569.01.T01 AT5G41920 27.551 294 183 10 157 442 128 399 5.67e-18 85.9
MsG0780038569.01.T01 AT3G49950 24.372 398 260 9 74 443 24 408 3.30e-17 83.6
MsG0780038569.01.T01 AT1G55580 26.014 296 197 7 161 442 157 444 1.18e-14 76.3
MsG0780038569.01.T01 AT5G67411 28.729 181 115 5 214 381 19 198 2.23e-11 63.5
MsG0780038569.01.T01 AT3G13840 24.497 298 202 12 153 442 227 509 9.10e-11 64.3

Find 75 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTCGATAGTTGGTTAT+TGG 0.173769 7:-48941906 MsG0780038569.01.T01:CDS
CTCTCAATGTTGCATCTTCT+TGG 0.201520 7:-48940935 MsG0780038569.01.T01:CDS
TTGCTTCAAGCTCTCTTTCA+TGG 0.207322 7:-48941765 MsG0780038569.01.T01:CDS
GAATGGTCACTAGTTGTTTC+TGG 0.207414 7:-48942167 MsG0780038569.01.T01:CDS
GAAATCCATCGGAGAACTTT+TGG 0.212473 7:-48941546 MsG0780038569.01.T01:CDS
TCCAAGCATTGTCACAGTTT+TGG 0.258937 7:-48941318 MsG0780038569.01.T01:CDS
GAGAGATTAAAGCTTGAAAA+AGG 0.266629 7:-48941182 MsG0780038569.01.T01:CDS
TTCAATTGCTGAAGGCAAAA+TGG 0.270126 7:-48941981 MsG0780038569.01.T01:CDS
GGCTTCAAGGATTGCGATAT+TGG 0.275042 7:+48941739 None:intergenic
GAGTTAGTTCGGTGAGATTT+AGG 0.277013 7:+48941474 None:intergenic
TGAGACTCGTATGAAGTTCT+TGG 0.280652 7:+48941630 None:intergenic
TCACACTCTTTGTTGTATCT+TGG 0.314011 7:+48941711 None:intergenic
CGTGCACGCATGAGCATGGC+TGG 0.338695 7:-48941080 MsG0780038569.01.T01:CDS
TCATACATCATCTTCTTGTC+TGG 0.342721 7:+48942230 None:intergenic
GCATGAGCATGGCTGGGTTT+AGG 0.345416 7:-48941073 MsG0780038569.01.T01:CDS
TTGCTGAACAATTCCGCAAC+TGG 0.346117 7:+48941830 None:intergenic
GGTCGAGAAGCTGAGAGTTT+AGG 0.349907 7:-48941524 MsG0780038569.01.T01:CDS
TGAAGGATTGAATTGTTCAT+AGG 0.353656 7:+48942326 None:intergenic
TGGAGTTTGCTTTGGTTGGA+TGG 0.363970 7:-48940964 MsG0780038569.01.T01:CDS
AGCTTCCATTAACGATTGTT+TGG 0.384672 7:+48942009 None:intergenic
AATGGTCACTAGTTGTTTCT+GGG 0.387462 7:-48942166 MsG0780038569.01.T01:CDS
CAATGACTCGCGAGTTAGTT+CGG 0.393659 7:+48941463 None:intergenic
ATCGTGATCTTCAACATTGC+TGG 0.402461 7:+48941599 None:intergenic
TTGTCTGGGTCATAACTTGT+TGG 0.402653 7:+48942245 None:intergenic
ATGGTGGAGTTTGCTTTGGT+TGG 0.406060 7:-48940968 MsG0780038569.01.T01:CDS
GGAGTTTGCTTTGGTTGGAT+GGG 0.411286 7:-48940963 MsG0780038569.01.T01:CDS
GTTACTGACTCAGTAACTTT+CGG 0.416851 7:+48941035 None:intergenic
TATCTTGGAATGCGGCTTCA+AGG 0.418126 7:+48941726 None:intergenic
CAAAACTAAAATTCGATAGT+TGG 0.427464 7:-48941913 MsG0780038569.01.T01:CDS
AACAATTCCGCAACTGGAGG+TGG 0.434762 7:+48941836 None:intergenic
GCACAGTAATTCTGCTACCT+TGG 0.435103 7:+48941000 None:intergenic
TGTTTCTGACCATTCGTTGT+TGG 0.451392 7:+48942133 None:intergenic
AAGCTGAGAGTTTAGGAATC+GGG 0.451634 7:-48941517 MsG0780038569.01.T01:CDS
CAGTAACTTTCGGACTCATC+GGG 0.453689 7:+48941045 None:intergenic
GAGAATGGTGGAGTTTGCTT+TGG 0.469489 7:-48940972 MsG0780038569.01.T01:CDS
TCCAAAACTGTGACAATGCT+TGG 0.490294 7:+48941317 None:intergenic
GTGTATGTGCGAAACTAAAG+AGG 0.494918 7:+48941942 None:intergenic
TCAGTAACTTTCGGACTCAT+CGG 0.497001 7:+48941044 None:intergenic
TCAGCCACACGTGAAACTAA+TGG 0.502475 7:+48941269 None:intergenic
GAAGCTGAGAGTTTAGGAAT+CGG 0.518502 7:-48941518 MsG0780038569.01.T01:CDS
GAACTTCATACGAGTCTCAA+TGG 0.519117 7:-48941626 MsG0780038569.01.T01:CDS
GAGAGAGTGATTTCACTTGA+CGG 0.522514 7:+48941339 None:intergenic
TGCAGTTGCTTGTGAAGGGA+GGG 0.531185 7:-48941138 MsG0780038569.01.T01:CDS
TCGACCCAAAAGTTCTCCGA+TGG 0.533012 7:+48941541 None:intergenic
CTTTGTTGTATCTTGGAATG+CGG 0.536014 7:+48941718 None:intergenic
AATCGGGTTTGAATTCAAAC+CGG 0.540939 7:-48941501 MsG0780038569.01.T01:CDS
CATACATCATCTTCTTGTCT+GGG 0.542385 7:+48942231 None:intergenic
TCGGTGAGATTTAGGTTCAC+CGG 0.544255 7:+48941482 None:intergenic
AGAATCTATTGAATTTGCGA+TGG 0.545507 7:-48941219 MsG0780038569.01.T01:CDS
ACATTGATGATGAAGAAGAA+TGG 0.574603 7:-48942184 MsG0780038569.01.T01:CDS
ATGGCGTGCACGCATGAGCA+TGG 0.579124 7:-48941084 MsG0780038569.01.T01:CDS
AAGGGAGGGATCGTGTGGAA+AGG 0.587033 7:-48941124 MsG0780038569.01.T01:CDS
GTGCACGCATGAGCATGGCT+GGG 0.597641 7:-48941079 MsG0780038569.01.T01:CDS
GCTGCCACTTCAATTGCTGA+AGG 0.603088 7:-48941989 MsG0780038569.01.T01:CDS
ATGCAGTTGCTTGTGAAGGG+AGG 0.607004 7:-48941139 MsG0780038569.01.T01:CDS
CTGAACAATTCCGCAACTGG+AGG 0.608240 7:+48941833 None:intergenic
ATTACTGTGCATGAAGAGAA+TGG 0.610201 7:-48940987 MsG0780038569.01.T01:CDS
TGAAAATCCACCTCCAGTTG+CGG 0.610781 7:-48941843 MsG0780038569.01.T01:CDS
TTTGCCTTCAGCAATTGAAG+TGG 0.611526 7:+48941985 None:intergenic
TGTGAAGAATCTCTGTGTTG+TGG 0.612679 7:-48941693 MsG0780038569.01.T01:CDS
ATAAATGCAGTTGCTTGTGA+AGG 0.616404 7:-48941143 MsG0780038569.01.T01:CDS
AAAGAGAAGTTGAGTTGACT+CGG 0.617772 7:+48941799 None:intergenic
TTATGAACACCAACAACGAA+TGG 0.618414 7:-48942142 MsG0780038569.01.T01:CDS
ACTAGATGAGAGAGTGTCAA+CGG 0.620039 7:-48941384 MsG0780038569.01.T01:CDS
GATGACAATCTGAAATCCAT+CGG 0.638005 7:-48941557 MsG0780038569.01.T01:CDS
GTCATTGAATTGTGACTCAG+AGG 0.645367 7:-48941447 MsG0780038569.01.T01:CDS
AGGCAAAATGGATTATGCGA+AGG 0.646229 7:-48941969 MsG0780038569.01.T01:CDS
AACACCATTAGTTTCACGTG+TGG 0.647563 7:-48941273 MsG0780038569.01.T01:CDS
GTAACTTCAAGATTCATCCA+AGG 0.655646 7:-48941017 MsG0780038569.01.T01:CDS
TGGATTTCAGATTGTCATCG+TGG 0.656125 7:+48941561 None:intergenic
TAAATGCAGTTGCTTGTGAA+GGG 0.661760 7:-48941142 MsG0780038569.01.T01:CDS
TGACGGAGAAGTGTGTCACG+TGG 0.698381 7:+48941356 None:intergenic
TTGTGAAGGGAGGGATCGTG+TGG 0.715844 7:-48941129 MsG0780038569.01.T01:CDS
GTTGAAGATCACGATTGTGA+CGG 0.729260 7:-48941591 MsG0780038569.01.T01:CDS
ACTGTGCATGAAGAGAATGG+TGG 0.760237 7:-48940984 MsG0780038569.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTATCGAATTTTAGTTTT+GGG + Chr7:48941340-48941359 None:intergenic 20.0%
! AAAATTCGATAGTTGGTTAT+TGG - Chr7:48941346-48941365 MsG0780038569.01.T01:CDS 25.0%
! CAAAACTAAAATTCGATAGT+TGG - Chr7:48941339-48941358 MsG0780038569.01.T01:CDS 25.0%
!! AGCAAAATCAGAATTTTCAT+AGG + Chr7:48940966-48940985 None:intergenic 25.0%
!!! AATGAAATAGGTTTTTGGAT+GGG + Chr7:48941175-48941194 None:intergenic 25.0%
!!! CAACTATCGAATTTTAGTTT+TGG + Chr7:48941341-48941360 None:intergenic 25.0%
AAAGAAGGTGAGAATGAAAT+AGG + Chr7:48941187-48941206 None:intergenic 30.0%
AGAATCTATTGAATTTGCGA+TGG - Chr7:48942033-48942052 MsG0780038569.01.T01:intron 30.0%
GAGAGATTAAAGCTTGAAAA+AGG - Chr7:48942070-48942089 MsG0780038569.01.T01:intron 30.0%
! AGGAAAAATTCGCATTTTGA+AGG + Chr7:48940946-48940965 None:intergenic 30.0%
! GTGAGAATGAAATAGGTTTT+TGG + Chr7:48941180-48941199 None:intergenic 30.0%
! GTTTTCCAAACAATCGTTAA+TGG - Chr7:48941238-48941257 MsG0780038569.01.T01:CDS 30.0%
!! ACATTGATGATGAAGAAGAA+TGG - Chr7:48941068-48941087 MsG0780038569.01.T01:CDS 30.0%
!! ATGAAATAGGTTTTTGGATG+GGG + Chr7:48941174-48941193 None:intergenic 30.0%
!! GAATGAAATAGGTTTTTGGA+TGG + Chr7:48941176-48941195 None:intergenic 30.0%
!! GGTGGATTTTCAATGTTATT+CGG + Chr7:48941401-48941420 None:intergenic 30.0%
!! GTGGATTTTGATATTGGTAA+TGG - Chr7:48941578-48941597 MsG0780038569.01.T01:CDS 30.0%
!! TGTGTTGTGGATTTTGATAT+TGG - Chr7:48941572-48941591 MsG0780038569.01.T01:CDS 30.0%
AATCGGGTTTGAATTCAAAC+CGG - Chr7:48941751-48941770 MsG0780038569.01.T01:CDS 35.0%
AGCTTCCATTAACGATTGTT+TGG + Chr7:48941246-48941265 None:intergenic 35.0%
ATAAATGCAGTTGCTTGTGA+AGG - Chr7:48942109-48942128 MsG0780038569.01.T01:intron 35.0%
ATTACTGTGCATGAAGAGAA+TGG - Chr7:48942265-48942284 MsG0780038569.01.T01:CDS 35.0%
CATACATCATCTTCTTGTCT+GGG + Chr7:48941024-48941043 None:intergenic 35.0%
GTAACTTCAAGATTCATCCA+AGG - Chr7:48942235-48942254 MsG0780038569.01.T01:CDS 35.0%
TAAATGCAGTTGCTTGTGAA+GGG - Chr7:48942110-48942129 MsG0780038569.01.T01:intron 35.0%
TCATACATCATCTTCTTGTC+TGG + Chr7:48941025-48941044 None:intergenic 35.0%
TTATGAACACCAACAACGAA+TGG - Chr7:48941110-48941129 MsG0780038569.01.T01:CDS 35.0%
TTCAATTGCTGAAGGCAAAA+TGG - Chr7:48941271-48941290 MsG0780038569.01.T01:CDS 35.0%
! AAATCCATCGGAGAACTTTT+GGG - Chr7:48941707-48941726 MsG0780038569.01.T01:CDS 35.0%
! CTTTGTTGTATCTTGGAATG+CGG + Chr7:48941537-48941556 None:intergenic 35.0%
! GATGACAATCTGAAATCCAT+CGG - Chr7:48941695-48941714 MsG0780038569.01.T01:CDS 35.0%
! TCACACTCTTTGTTGTATCT+TGG + Chr7:48941544-48941563 None:intergenic 35.0%
! TTTTGCTGAGATTCAAAGCA+CGG - Chr7:48940979-48940998 MsG0780038569.01.T01:CDS 35.0%
!! AAAGAGAAGTTGAGTTGACT+CGG + Chr7:48941456-48941475 None:intergenic 35.0%
!! AATGGTCACTAGTTGTTTCT+GGG - Chr7:48941086-48941105 MsG0780038569.01.T01:CDS 35.0%
!! CAATAGATGGTGGAAAAAGA+AGG + Chr7:48941202-48941221 None:intergenic 35.0%
!! GTTACTGACTCAGTAACTTT+CGG + Chr7:48942220-48942239 None:intergenic 35.0%
!! TGGAAAGGTGTGAAGTTTTT+GGG - Chr7:48942143-48942162 MsG0780038569.01.T01:CDS 35.0%
AAGCTGAGAGTTTAGGAATC+GGG - Chr7:48941735-48941754 MsG0780038569.01.T01:CDS 40.0%
ATCGTGATCTTCAACATTGC+TGG + Chr7:48941656-48941675 None:intergenic 40.0%
CTCTCAATGTTGCATCTTCT+TGG - Chr7:48942317-48942336 MsG0780038569.01.T01:CDS 40.0%
GAACTTCATACGAGTCTCAA+TGG - Chr7:48941626-48941645 MsG0780038569.01.T01:CDS 40.0%
GAAGCTGAGAGTTTAGGAAT+CGG - Chr7:48941734-48941753 MsG0780038569.01.T01:CDS 40.0%
GAAGCTGGTGAAACAATAGA+TGG + Chr7:48941215-48941234 None:intergenic 40.0%
GAGAGAGTGATTTCACTTGA+CGG + Chr7:48941916-48941935 None:intergenic 40.0%
GTCATTGAATTGTGACTCAG+AGG - Chr7:48941805-48941824 MsG0780038569.01.T01:CDS 40.0%
GTGTATGTGCGAAACTAAAG+AGG + Chr7:48941313-48941332 None:intergenic 40.0%
GTTGAAGATCACGATTGTGA+CGG - Chr7:48941661-48941680 MsG0780038569.01.T01:CDS 40.0%
TCAGTAACTTTCGGACTCAT+CGG + Chr7:48942211-48942230 None:intergenic 40.0%
TCCAAAACTGTGACAATGCT+TGG + Chr7:48941938-48941957 None:intergenic 40.0%
TGAGACTCGTATGAAGTTCT+TGG + Chr7:48941625-48941644 None:intergenic 40.0%
TGGATTTCAGATTGTCATCG+TGG + Chr7:48941694-48941713 None:intergenic 40.0%
TGTGAAGAATCTCTGTGTTG+TGG - Chr7:48941559-48941578 MsG0780038569.01.T01:CDS 40.0%
TGTTTGGAAAACTCAGAAGC+TGG + Chr7:48941230-48941249 None:intergenic 40.0%
TTGCTTCAAGCTCTCTTTCA+TGG - Chr7:48941487-48941506 MsG0780038569.01.T01:CDS 40.0%
TTTGCCTTCAGCAATTGAAG+TGG + Chr7:48941270-48941289 None:intergenic 40.0%
! AACACCATTAGTTTCACGTG+TGG - Chr7:48941979-48941998 MsG0780038569.01.T01:CDS 40.0%
! GAAATCCATCGGAGAACTTT+TGG - Chr7:48941706-48941725 MsG0780038569.01.T01:CDS 40.0%
! GAATGGTCACTAGTTGTTTC+TGG - Chr7:48941085-48941104 MsG0780038569.01.T01:CDS 40.0%
! GAGTTAGTTCGGTGAGATTT+AGG + Chr7:48941781-48941800 None:intergenic 40.0%
! TGTTTCTGACCATTCGTTGT+TGG + Chr7:48941122-48941141 None:intergenic 40.0%
! TTGTCTGGGTCATAACTTGT+TGG + Chr7:48941010-48941029 None:intergenic 40.0%
!! ACTAGATGAGAGAGTGTCAA+CGG - Chr7:48941868-48941887 MsG0780038569.01.T01:CDS 40.0%
!! AGGCAAAATGGATTATGCGA+AGG - Chr7:48941283-48941302 MsG0780038569.01.T01:CDS 40.0%
!! GGTGTGAAGTTTTTGGGAAA+TGG - Chr7:48942149-48942168 MsG0780038569.01.T01:CDS 40.0%
!! GTGGAAAGGTGTGAAGTTTT+TGG - Chr7:48942142-48942161 MsG0780038569.01.T01:CDS 40.0%
!! TCCAAGCATTGTCACAGTTT+TGG - Chr7:48941934-48941953 MsG0780038569.01.T01:CDS 40.0%
ACTGTGCATGAAGAGAATGG+TGG - Chr7:48942268-48942287 MsG0780038569.01.T01:CDS 45.0%
CAATGACTCGCGAGTTAGTT+CGG + Chr7:48941792-48941811 None:intergenic 45.0%
CAGTAACTTTCGGACTCATC+GGG + Chr7:48942210-48942229 None:intergenic 45.0%
GCACAGTAATTCTGCTACCT+TGG + Chr7:48942255-48942274 None:intergenic 45.0%
GCTGGTGAAACAATAGATGG+TGG + Chr7:48941212-48941231 None:intergenic 45.0%
GGCTTCAAGGATTGCGATAT+TGG + Chr7:48941516-48941535 None:intergenic 45.0%
TATCTTGGAATGCGGCTTCA+AGG + Chr7:48941529-48941548 None:intergenic 45.0%
TCAGCCACACGTGAAACTAA+TGG + Chr7:48941986-48942005 None:intergenic 45.0%
TGAAAATCCACCTCCAGTTG+CGG - Chr7:48941409-48941428 MsG0780038569.01.T01:CDS 45.0%
TTGCTGAACAATTCCGCAAC+TGG + Chr7:48941425-48941444 None:intergenic 45.0%
! ATGGTGGAGTTTGCTTTGGT+TGG - Chr7:48942284-48942303 MsG0780038569.01.T01:CDS 45.0%
! GAGAATGGTGGAGTTTGCTT+TGG - Chr7:48942280-48942299 MsG0780038569.01.T01:CDS 45.0%
! GGAGTTTGCTTTGGTTGGAT+GGG - Chr7:48942289-48942308 MsG0780038569.01.T01:CDS 45.0%
! TCGGTGAGATTTAGGTTCAC+CGG + Chr7:48941773-48941792 None:intergenic 45.0%
! TGGAGTTTGCTTTGGTTGGA+TGG - Chr7:48942288-48942307 MsG0780038569.01.T01:CDS 45.0%
AACAATTCCGCAACTGGAGG+TGG + Chr7:48941419-48941438 None:intergenic 50.0%
ATGCAGTTGCTTGTGAAGGG+AGG - Chr7:48942113-48942132 MsG0780038569.01.T01:intron 50.0%
CTGAACAATTCCGCAACTGG+AGG + Chr7:48941422-48941441 None:intergenic 50.0%
GGTCGAGAAGCTGAGAGTTT+AGG - Chr7:48941728-48941747 MsG0780038569.01.T01:CDS 50.0%
TCGACCCAAAAGTTCTCCGA+TGG + Chr7:48941714-48941733 None:intergenic 50.0%
TGCAGTTGCTTGTGAAGGGA+GGG - Chr7:48942114-48942133 MsG0780038569.01.T01:intron 50.0%
! GCTGCCACTTCAATTGCTGA+AGG - Chr7:48941263-48941282 MsG0780038569.01.T01:CDS 50.0%
AAGGGAGGGATCGTGTGGAA+AGG - Chr7:48942128-48942147 MsG0780038569.01.T01:intron 55.0%
GCATGAGCATGGCTGGGTTT+AGG - Chr7:48942179-48942198 MsG0780038569.01.T01:CDS 55.0%
TTGTGAAGGGAGGGATCGTG+TGG - Chr7:48942123-48942142 MsG0780038569.01.T01:intron 55.0%
! TGACGGAGAAGTGTGTCACG+TGG + Chr7:48941899-48941918 None:intergenic 55.0%
ATGGCGTGCACGCATGAGCA+TGG - Chr7:48942168-48942187 MsG0780038569.01.T01:CDS 60.0%
GTGCACGCATGAGCATGGCT+GGG - Chr7:48942173-48942192 MsG0780038569.01.T01:CDS 60.0%
CGTGCACGCATGAGCATGGC+TGG - Chr7:48942172-48942191 MsG0780038569.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 48940929 48942345 48940929 ID=MsG0780038569.01;Name=MsG0780038569.01
Chr7 mRNA 48940929 48942345 48940929 ID=MsG0780038569.01.T01;Parent=MsG0780038569.01;Name=MsG0780038569.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|2|0|443
Chr7 exon 48942129 48942345 48942129 ID=MsG0780038569.01.T01:exon:14591;Parent=MsG0780038569.01.T01
Chr7 exon 48940929 48942043 48940929 ID=MsG0780038569.01.T01:exon:14590;Parent=MsG0780038569.01.T01
Chr7 CDS 48942129 48942345 48942129 ID=MsG0780038569.01.T01:cds;Parent=MsG0780038569.01.T01
Chr7 CDS 48940929 48942043 48940929 ID=MsG0780038569.01.T01:cds;Parent=MsG0780038569.01.T01
Gene Sequence

>MsG0780038569.01.T01

ATGAACAATTCAATCCTTCAAAATGCGAATTTTTCCTATGAAAATTCTGATTTTGCTGAGATTCAAAGCACGGTAGTTCCAACAAGTTATGACCCAGACAAGAAGATGATGTATGAGTTAGAGAAAAAGCTTCATGAAGACATTGATGATGAAGAAGAATGGTCACTAGTTGTTTCTGGGATTATGAACACCAACAACGAATGGTCAGAAACAATTCCTTCTGAGTTTTCCAAACAATCGTTAATGGAAGCTGCCACTTCAATTGCTGAAGGCAAAATGGATTATGCGAAGGAGATCCTCTTTAGTTTCGCACATACACAAAACCCAAAACTAAAATTCGATAGTTGGTTATTGGATTGCATTGCTTCAGCGCTGAAATTGCGTCCGAATAACATTGAAAATCCACCTCCAGTTGCGGAATTGTTCAGCAAAGAACATGCCGAGTCAACTCAACTTCTCTTTGATCACTCTCTTTGCTTCAAGCTCTCTTTCATGGCTGCCAATATCGCAATCCTTGAAGCCGCATTCCAAGATACAACAAAGAGTGTGAAGAATCTCTGTGTTGTGGATTTTGATATTGGTAATGGAAAACAATACATCAATCTGCTCCAAGAACTTCATACGAGTCTCAATGGTTCACCAGCAATGTTGAAGATCACGATTGTGACGGTGAACATCCACGATGACAATCTGAAATCCATCGGAGAACTTTTGGGTCGAGAAGCTGAGAGTTTAGGAATCGGGTTTGAATTCAAACCGGTGAACCTAAATCTCACCGAACTAACTCGCGAGTCATTGAATTGTGACTCAGAGGATATTCTTGCTGTGAATTTCGCGTTTAATCTATACAAAATACTAGATGAGAGAGTGTCAACGGAGAATCCACGTGACACACTTCTCCGTCAAGTGAAATCACTCTCTCCAAGCATTGTCACAGTTTTGGAGCAAGAGATGAATACAAACACAACACCATTAGTTTCACGTGTGGCTGAAACTTGTTCTTATTACAGCACATTGCTAGAATCTATTGAATTTGCGATGGATCGTGATAGTTATGAGAGATTAAAGCTTGAAAAAGGACTGAGCATGAAGATGATAAATGCAGTTGCTTGTGAAGGGAGGGATCGTGTGGAAAGGTGTGAAGTTTTTGGGAAATGGCGTGCACGCATGAGCATGGCTGGGTTTAGGTTAAACCCGATGAGTCCGAAAGTTACTGAGTCAGTAACTTCAAGATTCATCCAAGGTAGCAGAATTACTGTGCATGAAGAGAATGGTGGAGTTTGCTTTGGTTGGATGGGAAAAACTCTCAATGTTGCATCTTCTTGGTGTTAA
Protein sequence

>MsG0780038569.01.T01

MNNSILQNANFSYENSDFAEIQSTVVPTSYDPDKKMMYELEKKLHEDIDDEEEWSLVVSGIMNTNNEWSETIPSEFSKQSLMEAATSIAEGKMDYAKEILFSFAHTQNPKLKFDSWLLDCIASALKLRPNNIENPPPVAELFSKEHAESTQLLFDHSLCFKLSFMAANIAILEAAFQDTTKSVKNLCVVDFDIGNGKQYINLLQELHTSLNGSPAMLKITIVTVNIHDDNLKSIGELLGREAESLGIGFEFKPVNLNLTELTRESLNCDSEDILAVNFAFNLYKILDERVSTENPRDTLLRQVKSLSPSIVTVLEQEMNTNTTPLVSRVAETCSYYSTLLESIEFAMDRDSYERLKLEKGLSMKMINAVACEGRDRVERCEVFGKWRARMSMAGFRLNPMSPKVTESVTSRFIQGSRITVHEENGGVCFGWMGKTLNVASSWC*