AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038651.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038651.01.T01 MTR_7g059225 100.000 149 0 0 1 149 533 681 9.04e-102 306
MsG0780038651.01.T01 MTR_7g073710 49.107 112 55 1 17 128 498 607 1.87e-28 109
MsG0780038651.01.T01 MTR_5g083480 43.885 139 70 3 1 137 647 779 7.46e-28 108
MsG0780038651.01.T01 MTR_5g083480 43.885 139 70 3 1 137 644 776 7.67e-28 108
MsG0780038651.01.T01 MTR_5g075630 43.511 131 72 1 13 143 515 643 1.03e-27 107
MsG0780038651.01.T01 MTR_3g093710 43.200 125 69 1 2 126 491 613 3.87e-27 105
MsG0780038651.01.T01 MTR_3g062500 41.985 131 74 1 13 143 514 642 1.53e-26 104
MsG0780038651.01.T01 MTR_3g062500 41.985 131 74 1 13 143 524 652 1.62e-26 104
MsG0780038651.01.T01 MTR_3g090665 43.609 133 68 2 13 145 215 340 4.30e-26 101
MsG0780038651.01.T01 MTR_8g107470 47.541 122 59 2 14 135 534 650 4.81e-26 102
MsG0780038651.01.T01 MTR_3g090660 43.704 135 71 2 14 148 482 611 1.39e-25 101
MsG0780038651.01.T01 MTR_5g068210 41.270 126 71 3 5 128 464 588 2.09e-25 100
MsG0780038651.01.T01 MTR_4g113100 45.455 110 58 1 17 126 509 616 2.15e-25 100
MsG0780038651.01.T01 MTR_6g470960 46.018 113 59 1 14 126 537 647 2.10e-24 98.2
MsG0780038651.01.T01 MTR_5g055470 44.737 114 60 2 14 126 495 606 9.07e-24 96.3
MsG0780038651.01.T01 MTR_1g110280 42.276 123 64 2 11 128 518 638 9.38e-24 96.3
MsG0780038651.01.T01 MTR_5g009660 37.956 137 74 3 12 140 459 592 8.83e-23 93.6
MsG0780038651.01.T01 MTR_4g014070 44.275 131 65 3 1 129 652 776 1.09e-22 93.2
MsG0780038651.01.T01 MTR_1g028890 44.361 133 67 4 17 148 450 576 4.06e-22 91.7
MsG0780038651.01.T01 MTR_8g099195 36.567 134 81 2 12 144 482 612 1.83e-21 89.7
MsG0780038651.01.T01 MTR_5g078080 40.708 113 65 1 14 126 499 609 2.20e-21 89.7
MsG0780038651.01.T01 MTR_8g046290 34.091 132 77 3 3 126 220 349 2.73e-20 85.5
MsG0780038651.01.T01 MTR_7g103440 35.570 149 82 3 11 148 534 679 4.35e-19 83.2
MsG0780038651.01.T01 MTR_1g061590 38.760 129 66 2 11 128 521 647 7.16e-19 82.4
MsG0780038651.01.T01 MTR_2g105900 38.739 111 64 3 18 126 508 616 1.19e-15 73.2
MsG0780038651.01.T01 MTR_3g047890 35.385 130 80 3 15 143 346 472 8.84e-15 70.5
MsG0780038651.01.T01 MTR_2g008740 36.923 130 63 4 3 126 270 386 1.53e-14 69.7
MsG0780038651.01.T01 MTR_4g070970 32.374 139 78 5 3 133 804 934 1.65e-14 70.1
MsG0780038651.01.T01 MTR_2g010470 36.134 119 70 4 12 129 854 967 2.20e-14 69.7
MsG0780038651.01.T01 MTR_6g069030 31.250 128 83 2 2 126 481 606 2.53e-14 69.3
MsG0780038651.01.T01 MTR_3g110840 34.532 139 83 4 12 147 824 957 3.95e-14 68.9
MsG0780038651.01.T01 MTR_5g017080 36.937 111 67 1 15 125 332 439 5.06e-14 68.6
MsG0780038651.01.T01 MTR_7g098610 32.283 127 83 3 7 132 870 994 5.16e-14 68.6
MsG0780038651.01.T01 MTR_1g009270 36.937 111 66 3 18 126 505 613 5.33e-14 68.6
MsG0780038651.01.T01 MTR_5g011410 33.333 117 74 1 17 133 779 891 5.60e-14 68.6
MsG0780038651.01.T01 MTR_7g081480 34.188 117 64 2 12 124 934 1041 6.72e-14 68.2
MsG0780038651.01.T01 MTR_5g091380 34.559 136 78 3 15 143 348 479 6.85e-14 68.2
MsG0780038651.01.T01 MTR_1g039240 32.836 134 59 3 6 124 1037 1154 6.96e-14 68.2
MsG0780038651.01.T01 MTR_1g069470 30.769 130 87 2 12 141 867 993 7.01e-14 68.2
MsG0780038651.01.T01 MTR_4g123880 35.433 127 71 2 15 133 344 467 8.20e-14 67.8
MsG0780038651.01.T01 MTR_7g045510 35.088 114 67 2 11 124 1074 1180 8.22e-14 68.2
MsG0780038651.01.T01 MTR_7g039330 35.088 114 67 2 11 124 1172 1278 8.27e-14 68.2
MsG0780038651.01.T01 MTR_3g009400 33.913 115 74 1 12 126 1068 1180 1.10e-13 67.8
MsG0780038651.01.T01 MTR_7g022050 38.182 110 63 4 17 125 523 628 1.42e-13 67.4
MsG0780038651.01.T01 MTR_4g123880 36.937 111 67 1 15 125 344 451 1.53e-13 67.0
MsG0780038651.01.T01 MTR_7g111690 38.053 113 63 2 15 125 360 467 1.89e-13 66.6
MsG0780038651.01.T01 MTR_7g022160 37.273 110 64 4 17 125 898 1003 2.28e-13 66.6
MsG0780038651.01.T01 MTR_3g110860 33.333 126 78 3 5 129 844 964 2.67e-13 66.6
MsG0780038651.01.T01 MTR_1g039220 33.613 119 78 1 6 124 1011 1128 3.35e-13 66.2
MsG0780038651.01.T01 MTR_2g005810 35.772 123 71 4 6 126 844 960 3.94e-13 65.9
MsG0780038651.01.T01 MTR_7g063010 36.937 111 67 1 15 125 503 610 5.26e-13 65.5
MsG0780038651.01.T01 MTR_2g072520 35.938 128 79 2 1 128 175 299 5.41e-13 65.1
MsG0780038651.01.T01 MTR_0400s0040 32.836 134 59 3 6 124 1037 1154 5.59e-13 65.5
MsG0780038651.01.T01 MTR_0365s0030 32.836 134 59 3 6 124 1037 1154 5.59e-13 65.5
MsG0780038651.01.T01 MTR_5g033690 32.500 120 77 3 11 127 471 589 6.40e-13 65.5
MsG0780038651.01.T01 MTR_7g045860 35.088 114 67 2 11 124 967 1073 8.49e-13 65.1
MsG0780038651.01.T01 MTR_3g069050 35.135 111 72 0 15 125 510 620 1.15e-12 64.7
MsG0780038651.01.T01 MTR_7g063030 36.937 111 67 1 15 125 507 614 1.19e-12 64.7
MsG0780038651.01.T01 MTR_7g063030 36.937 111 67 1 15 125 501 608 1.33e-12 64.3
MsG0780038651.01.T01 MTR_2g070020 32.117 137 89 3 4 139 964 1097 1.35e-12 64.3
MsG0780038651.01.T01 MTR_1g080440 29.134 127 88 2 7 133 868 992 1.43e-12 64.3
MsG0780038651.01.T01 MTR_7g078730 34.513 113 71 1 15 127 326 435 1.59e-12 64.3
MsG0780038651.01.T01 MTR_2g046130 36.036 111 68 1 15 125 349 456 1.65e-12 63.9
MsG0780038651.01.T01 MTR_3g095100 33.884 121 65 4 12 126 1038 1149 2.20e-12 63.9
MsG0780038651.01.T01 MTR_2g016500 35.294 119 67 3 11 125 460 572 2.23e-12 63.9
MsG0780038651.01.T01 MTR_2g022810 34.545 110 70 2 15 124 246 353 2.48e-12 63.5
MsG0780038651.01.T01 MTR_5g090100 33.600 125 77 5 9 131 843 963 2.57e-12 63.5
MsG0780038651.01.T01 MTR_7g050990 33.333 114 75 1 11 124 803 915 2.61e-12 63.5
MsG0780038651.01.T01 MTR_2g023150 41.573 89 45 2 32 120 161 242 2.61e-12 62.8
MsG0780038651.01.T01 MTR_5g014700 33.577 137 83 4 9 143 852 982 3.28e-12 63.5
MsG0780038651.01.T01 MTR_1g040545 34.426 122 73 3 6 124 886 1003 5.06e-12 62.8
MsG0780038651.01.T01 MTR_7g051040 35.593 118 68 4 11 124 827 940 5.14e-12 62.8
MsG0780038651.01.T01 MTR_5g045910 33.613 119 65 4 12 126 954 1062 6.75e-12 62.4
MsG0780038651.01.T01 MTR_7g081780 33.333 123 57 4 12 124 932 1039 7.19e-12 62.4
MsG0780038651.01.T01 MTR_1g038890 28.148 135 85 3 3 133 1009 1135 7.59e-12 62.4
MsG0780038651.01.T01 MTR_2g096960 36.207 116 69 3 12 126 248 359 8.01e-12 62.0
MsG0780038651.01.T01 MTR_4g097880 35.000 120 70 4 9 126 849 962 8.19e-12 62.4
MsG0780038651.01.T01 MTR_7g081570 32.479 117 66 3 12 124 924 1031 8.23e-12 62.4
MsG0780038651.01.T01 MTR_2g090710 29.371 143 87 4 7 149 852 980 8.42e-12 62.0
MsG0780038651.01.T01 MTR_4g074080 33.858 127 75 4 18 138 533 656 9.56e-12 62.0
MsG0780038651.01.T01 MTR_7g481630 32.479 117 66 3 12 124 65 172 9.73e-12 60.5
MsG0780038651.01.T01 MTR_2g031530 33.051 118 76 1 15 132 560 674 1.12e-11 61.6
MsG0780038651.01.T01 MTR_2g014960 33.333 117 62 4 15 125 775 881 1.13e-11 61.6
MsG0780038651.01.T01 MTR_8g101260 33.613 119 73 3 18 133 507 622 1.48e-11 61.2
MsG0780038651.01.T01 MTR_1g040615 35.772 123 70 4 6 124 2003 2120 1.53e-11 61.6
MsG0780038651.01.T01 MTR_2g090410 34.783 115 64 3 15 125 512 619 1.63e-11 61.2
MsG0780038651.01.T01 MTR_7g481590 32.479 117 66 3 12 124 188 295 1.77e-11 60.8
MsG0780038651.01.T01 MTR_2g031520 33.051 118 76 1 15 132 546 660 2.10e-11 60.8
MsG0780038651.01.T01 MTR_7g059285 33.913 115 71 2 12 126 963 1072 2.60e-11 60.8
MsG0780038651.01.T01 MTR_4g105070 35.135 111 67 2 15 124 519 625 2.86e-11 60.5
MsG0780038651.01.T01 MTR_2g073250 32.456 114 75 1 12 125 646 757 3.19e-11 60.5
MsG0780038651.01.T01 MTR_5g026510 32.456 114 73 2 12 125 465 574 3.71e-11 60.1
MsG0780038651.01.T01 MTR_3g107070 34.821 112 68 2 15 125 637 744 3.95e-11 60.1
MsG0780038651.01.T01 MTR_4g115630 34.545 110 69 1 15 124 382 488 3.96e-11 60.1
MsG0780038651.01.T01 MTR_1g082580 36.036 111 67 3 15 124 317 424 4.00e-11 60.1
MsG0780038651.01.T01 MTR_7g096980 28.906 128 83 3 11 137 1092 1212 4.28e-11 60.1
MsG0780038651.01.T01 MTR_3g068025 35.652 115 71 2 15 129 513 624 4.50e-11 60.1
MsG0780038651.01.T01 MTR_7g068190 31.496 127 83 1 12 138 206 328 4.72e-11 59.7
MsG0780038651.01.T01 MTR_7g073290 36.364 110 65 3 17 125 835 940 5.81e-11 59.7
MsG0780038651.01.T01 MTR_4g014130 42.857 70 39 1 61 130 1 69 7.55e-11 55.5
MsG0780038651.01.T01 MTR_5g030920 28.571 126 85 2 3 126 725 847 8.08e-11 59.3
MsG0780038651.01.T01 MTR_5g030920 28.571 126 85 2 3 126 748 870 8.18e-11 59.3
MsG0780038651.01.T01 MTR_8g028695 32.743 113 73 1 15 127 309 418 8.61e-11 59.3
MsG0780038651.01.T01 MTR_3g093930 39.091 110 62 5 17 125 868 973 9.79e-11 58.9
MsG0780038651.01.T01 MTR_1g097290 41.333 75 43 1 11 85 131 204 9.90e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038651.01.T01 AT3G24660 80.000 150 29 1 1 149 525 674 1.82e-81 253
MsG0780038651.01.T01 AT3G08680 44.961 129 70 1 1 129 489 616 4.05e-28 108
MsG0780038651.01.T01 AT3G08680 44.961 129 70 1 1 129 489 616 4.05e-28 108
MsG0780038651.01.T01 AT3G51740 45.038 131 64 3 1 129 686 810 1.32e-27 107
MsG0780038651.01.T01 AT5G58300 44.538 119 64 1 10 128 514 630 3.67e-27 106
MsG0780038651.01.T01 AT5G58300 44.538 119 64 1 10 128 514 630 3.67e-27 106
MsG0780038651.01.T01 AT5G58300 44.538 119 64 1 10 128 514 630 3.67e-27 106
MsG0780038651.01.T01 AT1G68400 47.059 119 59 2 12 128 521 637 1.60e-25 101
MsG0780038651.01.T01 AT2G26730 40.580 138 74 3 17 148 511 646 4.22e-24 97.4
MsG0780038651.01.T01 AT5G05160 43.609 133 70 3 14 143 502 632 1.29e-23 95.9
MsG0780038651.01.T01 AT5G07620 34.677 124 80 1 4 126 232 355 1.05e-21 89.4
MsG0780038651.01.T01 AT4G23740 39.130 115 68 1 12 126 495 607 1.41e-21 90.1
MsG0780038651.01.T01 AT4G23740 39.130 115 68 1 12 126 495 607 1.41e-21 90.1
MsG0780038651.01.T01 AT3G02880 38.938 113 68 1 14 126 503 614 6.87e-21 88.2
MsG0780038651.01.T01 AT5G53320 38.636 132 71 2 17 148 469 590 1.17e-20 87.4
MsG0780038651.01.T01 AT1G48480 38.793 116 70 1 14 129 530 644 3.62e-20 86.3
MsG0780038651.01.T01 AT2G36570 38.346 133 65 2 11 128 516 646 4.72e-20 85.9
MsG0780038651.01.T01 AT5G16590 36.283 113 71 1 14 126 501 612 3.32e-19 83.6
MsG0780038651.01.T01 AT1G64210 35.593 118 71 2 15 128 466 582 4.96e-18 80.1
MsG0780038651.01.T01 AT5G61570 32.540 126 73 2 6 128 241 357 7.88e-18 79.0
MsG0780038651.01.T01 AT5G61570 32.540 126 73 2 6 128 244 360 8.78e-18 79.0
MsG0780038651.01.T01 AT5G41680 35.398 113 71 1 14 126 216 326 9.29e-18 78.6
MsG0780038651.01.T01 AT5G41680 35.398 113 71 1 14 126 242 352 9.49e-18 78.6
MsG0780038651.01.T01 AT3G17840 36.752 117 71 2 14 128 524 639 2.63e-16 75.1
MsG0780038651.01.T01 AT5G24100 39.091 110 61 3 18 126 506 610 1.96e-15 72.8
MsG0780038651.01.T01 AT1G72180 31.126 151 90 5 2 147 835 976 2.21e-15 72.4
MsG0780038651.01.T01 AT1G75820 35.606 132 75 4 9 135 851 977 3.79e-15 72.0
MsG0780038651.01.T01 AT1G70110 33.824 136 85 2 12 145 505 637 4.64e-15 71.6
MsG0780038651.01.T01 AT4G29050 36.842 114 71 1 12 125 505 617 1.32e-14 70.1
MsG0780038651.01.T01 AT4G29050 36.842 114 71 1 12 125 519 631 1.62e-14 70.1
MsG0780038651.01.T01 AT2G42960 32.867 143 84 2 15 148 348 487 4.71e-14 68.6
MsG0780038651.01.T01 AT2G42960 32.867 143 84 2 15 148 348 487 4.71e-14 68.6
MsG0780038651.01.T01 AT2G42960 32.867 143 84 2 15 148 348 487 4.71e-14 68.6
MsG0780038651.01.T01 AT2G42960 32.867 143 84 2 15 148 348 487 4.71e-14 68.6
MsG0780038651.01.T01 AT5G59270 37.168 113 67 2 15 127 532 640 9.83e-14 67.8
MsG0780038651.01.T01 AT5G59270 37.168 113 67 2 15 127 516 624 1.05e-13 67.8
MsG0780038651.01.T01 AT4G21230 36.283 113 68 2 15 127 498 606 1.08e-13 67.8
MsG0780038651.01.T01 AT5G59270 37.168 113 67 2 15 127 513 621 1.10e-13 67.8
MsG0780038651.01.T01 AT3G17420 36.283 113 69 1 15 127 319 428 1.29e-13 67.4
MsG0780038651.01.T01 AT1G78530 34.677 124 80 1 12 135 233 355 1.87e-13 66.6
MsG0780038651.01.T01 AT5G60320 34.286 140 85 4 9 148 505 637 1.89e-13 67.0
MsG0780038651.01.T01 AT1G09970 34.454 119 72 3 12 129 843 956 2.24e-13 66.6
MsG0780038651.01.T01 AT4G31250 33.835 133 81 3 17 147 530 657 2.34e-13 66.6
MsG0780038651.01.T01 AT1G56720 38.053 113 63 2 15 125 344 451 2.86e-13 66.2
MsG0780038651.01.T01 AT1G56720 38.053 113 63 2 15 125 344 451 2.86e-13 66.2
MsG0780038651.01.T01 AT1G56720 38.053 113 63 2 15 125 344 451 2.86e-13 66.2
MsG0780038651.01.T01 AT1G56720 38.053 113 63 2 15 125 344 451 2.86e-13 66.2
MsG0780038651.01.T01 AT5G49660 31.061 132 85 3 12 142 825 951 2.93e-13 66.2
MsG0780038651.01.T01 AT3G59110 36.283 113 69 1 15 127 355 464 5.14e-13 65.5
MsG0780038651.01.T01 AT1G17230 35.433 127 76 4 4 128 954 1076 5.52e-13 65.5
MsG0780038651.01.T01 AT1G62950 33.945 109 68 1 17 125 778 882 6.92e-13 65.5
MsG0780038651.01.T01 AT1G70130 36.066 122 73 4 5 125 488 605 7.54e-13 65.1
MsG0780038651.01.T01 AT4G28350 30.000 130 83 3 2 128 499 623 7.73e-13 65.1
MsG0780038651.01.T01 AT5G01540 39.231 130 58 5 8 129 526 642 8.11e-13 65.1
MsG0780038651.01.T01 AT1G55610 34.783 115 73 1 12 126 1024 1136 8.21e-13 65.1
MsG0780038651.01.T01 AT1G55610 34.783 115 73 1 12 126 1024 1136 8.21e-13 65.1
MsG0780038651.01.T01 AT1G17230 35.433 127 76 4 4 128 954 1076 8.33e-13 65.1
MsG0780038651.01.T01 AT3G28040 34.545 110 67 3 17 125 897 1002 8.84e-13 65.1
MsG0780038651.01.T01 AT4G28650 28.671 143 100 2 1 143 855 995 9.55e-13 65.1
MsG0780038651.01.T01 AT4G39400 37.069 116 68 4 12 126 1046 1157 1.02e-12 65.1
MsG0780038651.01.T01 AT2G01950 34.109 129 72 3 12 128 1003 1130 1.69e-12 64.3
MsG0780038651.01.T01 AT5G65700 32.000 150 86 5 9 148 854 997 1.75e-12 64.3
MsG0780038651.01.T01 AT5G65700 32.000 150 86 5 9 148 854 997 1.75e-12 64.3
MsG0780038651.01.T01 AT5G20690 31.858 113 70 3 17 126 548 656 2.31e-12 63.9
MsG0780038651.01.T01 AT1G08590 31.008 129 85 4 7 133 883 1009 2.37e-12 63.9
MsG0780038651.01.T01 AT1G09440 36.036 111 68 2 15 125 322 429 2.52e-12 63.5
MsG0780038651.01.T01 AT1G09440 36.036 111 68 2 15 125 322 429 2.52e-12 63.5
MsG0780038651.01.T01 AT3G13380 34.783 115 73 1 12 126 1022 1134 2.87e-12 63.5
MsG0780038651.01.T01 AT1G28440 29.078 141 94 3 9 149 850 984 3.15e-12 63.5
MsG0780038651.01.T01 AT5G01890 39.091 110 62 4 17 125 852 957 5.49e-12 62.8
MsG0780038651.01.T01 AT5G18500 35.135 111 69 1 15 125 331 438 6.41e-12 62.4
MsG0780038651.01.T01 AT5G18500 35.135 111 69 1 15 125 331 438 6.41e-12 62.4
MsG0780038651.01.T01 AT5G18500 35.135 111 69 1 15 125 331 438 6.41e-12 62.4
MsG0780038651.01.T01 AT5G18500 35.135 111 69 1 15 125 331 438 6.41e-12 62.4
MsG0780038651.01.T01 AT5G18500 35.135 111 69 1 15 125 331 438 6.41e-12 62.4
MsG0780038651.01.T01 AT5G18500 35.135 111 69 1 15 125 331 438 6.41e-12 62.4
MsG0780038651.01.T01 AT1G09970 34.167 120 72 4 12 129 843 957 9.24e-12 62.0
MsG0780038651.01.T01 AT2G33170 30.882 136 91 2 5 139 981 1114 9.27e-12 62.0
MsG0780038651.01.T01 AT2G33170 30.882 136 91 2 5 139 981 1114 9.27e-12 62.0
MsG0780038651.01.T01 AT1G31420 32.456 114 73 2 12 125 465 574 1.31e-11 61.6
MsG0780038651.01.T01 AT1G31420 32.456 114 73 2 12 125 466 575 1.31e-11 61.6
MsG0780038651.01.T01 AT1G31420 32.456 114 73 2 12 125 466 575 1.31e-11 61.6
MsG0780038651.01.T01 AT3G49670 34.167 120 71 4 9 126 850 963 1.56e-11 61.6
MsG0780038651.01.T01 AT4G02630 33.333 111 71 1 15 125 328 435 1.64e-11 61.2
MsG0780038651.01.T01 AT5G59670 33.884 121 75 3 6 126 720 835 2.05e-11 61.2
MsG0780038651.01.T01 AT5G59670 33.884 121 75 3 6 126 720 835 2.05e-11 61.2
MsG0780038651.01.T01 AT1G34110 32.800 125 81 3 3 126 929 1051 2.26e-11 60.8
MsG0780038651.01.T01 AT1G14370 31.858 113 73 3 15 126 259 368 2.65e-11 60.5
MsG0780038651.01.T01 AT1G34110 32.800 125 81 3 3 126 929 1051 2.85e-11 60.8
MsG0780038651.01.T01 AT5G06940 33.333 111 68 3 18 125 754 861 2.90e-11 60.8
MsG0780038651.01.T01 AT4G21410 32.432 111 69 2 12 120 521 627 3.21e-11 60.5
MsG0780038651.01.T01 AT3G19700 33.913 115 74 2 15 129 856 968 3.85e-11 60.5
MsG0780038651.01.T01 AT4G21410 32.432 111 69 2 12 120 396 502 5.64e-11 59.7
MsG0780038651.01.T01 AT4G01330 32.432 111 72 1 15 125 327 434 5.85e-11 59.7
MsG0780038651.01.T01 AT4G01330 32.432 111 72 1 15 125 327 434 6.21e-11 59.7
MsG0780038651.01.T01 AT4G02010 33.333 111 72 2 15 125 548 656 6.87e-11 59.7
MsG0780038651.01.T01 AT4G01330 32.432 111 72 1 15 125 327 434 8.24e-11 59.3
MsG0780038651.01.T01 AT2G01210 32.258 124 79 4 4 125 589 709 8.98e-11 59.3

Find 48 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGGTGAAAGTAGCGGTTC+TGG 0.370530 7:-50524519 MsG0780038651.01.T01:CDS
GATGGAAGACGGTTTGGTTC+AGG 0.379055 7:-50524441 MsG0780038651.01.T01:CDS
CCGCTTCTTCCGTTCTTACC+AGG 0.394893 7:+50524563 None:intergenic
GGCATCGGTTAGACCGAGTA+TGG 0.401661 7:-50524384 MsG0780038651.01.T01:CDS
TTCTTCATTCTTTGAAGCTC+CGG 0.409600 7:+50524653 None:intergenic
CTCACAACTTCTTCCATACT+CGG 0.433211 7:+50524371 None:intergenic
AGGACCGACGTTTACGCGTT+CGG 0.440823 7:-50524620 MsG0780038651.01.T01:CDS
TGCTTTGTAGCCGTCAGTCT+TGG 0.458038 7:+50524676 None:intergenic
AAGTCCGATGGAAGACGGTT+TGG 0.458409 7:-50524447 MsG0780038651.01.T01:CDS
GGAAGAAGTTGTGAGGCAAT+TGG 0.473563 7:-50524363 MsG0780038651.01.T01:CDS
ATCTTGATCGGTAAGAAGCC+TGG 0.498382 7:-50524581 MsG0780038651.01.T01:CDS
TATAAAGCAGACCTGTTCCT+TGG 0.506498 7:+50524329 None:intergenic
CGGAAGAAGCGGTGAGTACG+TGG 0.508417 7:-50524552 MsG0780038651.01.T01:CDS
TGCCACCATCTCGTCAGCTA+TGG 0.510092 7:+50524703 None:intergenic
AGAAGTTGTGAGGCAATTGG+AGG 0.512222 7:-50524360 MsG0780038651.01.T01:CDS
AGGAGAATAGACCAAGGAAC+AGG 0.528531 7:-50524340 MsG0780038651.01.T01:CDS
TTCGATGTGGAACTGTTGAA+AGG 0.540450 7:-50524476 MsG0780038651.01.T01:CDS
TCGATGTGGAACTGTTGAAA+GGG 0.542824 7:-50524475 MsG0780038651.01.T01:CDS
CTTCCACTTCTTGTCTCAGT+AGG 0.552341 7:+50524302 None:intergenic
CAGGCACTGAAGCTAGCAAT+GGG 0.553473 7:-50524422 MsG0780038651.01.T01:CDS
CCCTTCCATAGCTGACGAGA+TGG 0.560403 7:-50524708 MsG0780038651.01.T01:CDS
TTACTTCTCGAAATCTTGAT+CGG 0.563308 7:-50524593 MsG0780038651.01.T01:CDS
ACCATCTCGTCAGCTATGGA+AGG 0.570613 7:+50524707 None:intergenic
ATGTTGTGCACCTGTGGCAT+CGG 0.575040 7:-50524399 MsG0780038651.01.T01:CDS
TCAGGCACTGAAGCTAGCAA+TGG 0.577677 7:-50524423 MsG0780038651.01.T01:CDS
AGTGAATTCAAAGCTCAAAA+CGG 0.579389 7:+50524272 None:intergenic
TGAACCAAACCGTCTTCCAT+CGG 0.587016 7:+50524443 None:intergenic
GTACGTGGATTTACCTTCGA+TGG 0.590354 7:-50524537 MsG0780038651.01.T01:CDS
CTCGGTCTAACCGATGCCAC+AGG 0.596251 7:+50524389 None:intergenic
GACTGACGGCTACAAAGCAC+CGG 0.600258 7:-50524672 MsG0780038651.01.T01:CDS
AGTCCTACTGAGACAAGAAG+TGG 0.600418 7:-50524305 MsG0780038651.01.T01:CDS
GGTAAGAAGCCTGGTAAGAA+CGG 0.601776 7:-50524572 MsG0780038651.01.T01:CDS
ACCGCTACTTTCACCATCGA+AGG 0.603062 7:+50524524 None:intergenic
ACCTTCGATGGTGAAAGTAG+CGG 0.606820 7:-50524525 MsG0780038651.01.T01:CDS
TTCCATAGCTGACGAGATGG+TGG 0.621166 7:-50524705 MsG0780038651.01.T01:CDS
GAAAGGGATAAGAAGTCCGA+TGG 0.624672 7:-50524459 MsG0780038651.01.T01:CDS
ATAAGAAGTCCGATGGAAGA+CGG 0.626318 7:-50524452 MsG0780038651.01.T01:CDS
GGTGAAAGTAGCGGTTCTGG+AGG 0.630788 7:-50524516 MsG0780038651.01.T01:CDS
CCTGGTAAGAACGGAAGAAG+CGG 0.636941 7:-50524563 MsG0780038651.01.T01:CDS
CCATCTCGTCAGCTATGGAA+GGG 0.638458 7:+50524708 None:intergenic
AATGGGATGTTGTGCACCTG+TGG 0.638901 7:-50524405 MsG0780038651.01.T01:CDS
GAATGAAGAAATGTAACTCG+AGG 0.653177 7:-50524640 MsG0780038651.01.T01:CDS
GTGGCACTTGCCAAGACTGA+CGG 0.661005 7:-50524686 MsG0780038651.01.T01:CDS
AACAATGGAAGTATTCGATG+TGG 0.665410 7:-50524489 MsG0780038651.01.T01:CDS
CGAGTATGGAAGAAGTTGTG+AGG 0.673485 7:-50524370 MsG0780038651.01.T01:CDS
TATACCGAACGCGTAAACGT+CGG 0.697799 7:+50524616 None:intergenic
GGTTCTGGAGGAGACAACAA+TGG 0.725638 7:-50524504 MsG0780038651.01.T01:CDS
AATTGGAGGAGAATAGACCA+AGG 0.753497 7:-50524346 MsG0780038651.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
TTACTTCTCGAAATCTTGAT+CGG - Chr7:50524406-50524425 MsG0780038651.01.T01:CDS 30.0%
GAATGAAGAAATGTAACTCG+AGG - Chr7:50524359-50524378 MsG0780038651.01.T01:CDS 35.0%
!! AACAATGGAAGTATTCGATG+TGG - Chr7:50524510-50524529 MsG0780038651.01.T01:CDS 35.0%
!! TTCTTCATTCTTTGAAGCTC+CGG + Chr7:50524349-50524368 None:intergenic 35.0%
AATTGGAGGAGAATAGACCA+AGG - Chr7:50524653-50524672 MsG0780038651.01.T01:CDS 40.0%
ATAAGAAGTCCGATGGAAGA+CGG - Chr7:50524547-50524566 MsG0780038651.01.T01:CDS 40.0%
CTCACAACTTCTTCCATACT+CGG + Chr7:50524631-50524650 None:intergenic 40.0%
TATAAAGCAGACCTGTTCCT+TGG + Chr7:50524673-50524692 None:intergenic 40.0%
TCGATGTGGAACTGTTGAAA+GGG - Chr7:50524524-50524543 MsG0780038651.01.T01:CDS 40.0%
TTCGATGTGGAACTGTTGAA+AGG - Chr7:50524523-50524542 MsG0780038651.01.T01:CDS 40.0%
ACCTTCGATGGTGAAAGTAG+CGG - Chr7:50524474-50524493 MsG0780038651.01.T01:CDS 45.0%
AGAAGTTGTGAGGCAATTGG+AGG - Chr7:50524639-50524658 MsG0780038651.01.T01:CDS 45.0%
AGGAGAATAGACCAAGGAAC+AGG - Chr7:50524659-50524678 MsG0780038651.01.T01:CDS 45.0%
AGTCCTACTGAGACAAGAAG+TGG - Chr7:50524694-50524713 MsG0780038651.01.T01:CDS 45.0%
ATCTTGATCGGTAAGAAGCC+TGG - Chr7:50524418-50524437 MsG0780038651.01.T01:CDS 45.0%
CGAGTATGGAAGAAGTTGTG+AGG - Chr7:50524629-50524648 MsG0780038651.01.T01:CDS 45.0%
CTTCCACTTCTTGTCTCAGT+AGG + Chr7:50524700-50524719 None:intergenic 45.0%
GAAAGGGATAAGAAGTCCGA+TGG - Chr7:50524540-50524559 MsG0780038651.01.T01:CDS 45.0%
GGAAGAAGTTGTGAGGCAAT+TGG - Chr7:50524636-50524655 MsG0780038651.01.T01:CDS 45.0%
GGTAAGAAGCCTGGTAAGAA+CGG - Chr7:50524427-50524446 MsG0780038651.01.T01:CDS 45.0%
GTACGTGGATTTACCTTCGA+TGG - Chr7:50524462-50524481 MsG0780038651.01.T01:CDS 45.0%
TATACCGAACGCGTAAACGT+CGG + Chr7:50524386-50524405 None:intergenic 45.0%
TGAACCAAACCGTCTTCCAT+CGG + Chr7:50524559-50524578 None:intergenic 45.0%
AAGTCCGATGGAAGACGGTT+TGG - Chr7:50524552-50524571 MsG0780038651.01.T01:CDS 50.0%
AATGGGATGTTGTGCACCTG+TGG - Chr7:50524594-50524613 MsG0780038651.01.T01:CDS 50.0%
ACCATCTCGTCAGCTATGGA+AGG + Chr7:50524295-50524314 None:intergenic 50.0%
ATGTTGTGCACCTGTGGCAT+CGG - Chr7:50524600-50524619 MsG0780038651.01.T01:CDS 50.0%
CCATCTCGTCAGCTATGGAA+GGG + Chr7:50524294-50524313 None:intergenic 50.0%
CCTGGTAAGAACGGAAGAAG+CGG - Chr7:50524436-50524455 MsG0780038651.01.T01:CDS 50.0%
GATGGTGAAAGTAGCGGTTC+TGG - Chr7:50524480-50524499 MsG0780038651.01.T01:CDS 50.0%
TGCTTTGTAGCCGTCAGTCT+TGG + Chr7:50524326-50524345 None:intergenic 50.0%
TTCCATAGCTGACGAGATGG+TGG - Chr7:50524294-50524313 MsG0780038651.01.T01:CDS 50.0%
! ACCGCTACTTTCACCATCGA+AGG + Chr7:50524478-50524497 None:intergenic 50.0%
!! CAGGCACTGAAGCTAGCAAT+GGG - Chr7:50524577-50524596 MsG0780038651.01.T01:CDS 50.0%
!! GATGGAAGACGGTTTGGTTC+AGG - Chr7:50524558-50524577 MsG0780038651.01.T01:CDS 50.0%
!! GGTTCTGGAGGAGACAACAA+TGG - Chr7:50524495-50524514 MsG0780038651.01.T01:CDS 50.0%
!! TCAGGCACTGAAGCTAGCAA+TGG - Chr7:50524576-50524595 MsG0780038651.01.T01:CDS 50.0%
AGGACCGACGTTTACGCGTT+CGG - Chr7:50524379-50524398 MsG0780038651.01.T01:CDS 55.0%
CCCTTCCATAGCTGACGAGA+TGG - Chr7:50524291-50524310 MsG0780038651.01.T01:CDS 55.0%
CCGCTTCTTCCGTTCTTACC+AGG + Chr7:50524439-50524458 None:intergenic 55.0%
GACTGACGGCTACAAAGCAC+CGG - Chr7:50524327-50524346 MsG0780038651.01.T01:CDS 55.0%
GTGGCACTTGCCAAGACTGA+CGG - Chr7:50524313-50524332 MsG0780038651.01.T01:CDS 55.0%
TGCCACCATCTCGTCAGCTA+TGG + Chr7:50524299-50524318 None:intergenic 55.0%
! GGTGAAAGTAGCGGTTCTGG+AGG - Chr7:50524483-50524502 MsG0780038651.01.T01:CDS 55.0%
!! GGCATCGGTTAGACCGAGTA+TGG - Chr7:50524615-50524634 MsG0780038651.01.T01:CDS 55.0%
CGGAAGAAGCGGTGAGTACG+TGG - Chr7:50524447-50524466 MsG0780038651.01.T01:CDS 60.0%
CTCGGTCTAACCGATGCCAC+AGG + Chr7:50524613-50524632 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 50524286 50524735 50524286 ID=MsG0780038651.01;Name=MsG0780038651.01
Chr7 mRNA 50524286 50524735 50524286 ID=MsG0780038651.01.T01;Parent=MsG0780038651.01;Name=MsG0780038651.01.T01;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|1|1|0|149
Chr7 exon 50524286 50524735 50524286 ID=MsG0780038651.01.T01:exon:14781;Parent=MsG0780038651.01.T01
Chr7 CDS 50524286 50524735 50524286 ID=MsG0780038651.01.T01:cds;Parent=MsG0780038651.01.T01
Gene Sequence

>MsG0780038651.01.T01

ATGATCCCTTCCATAGCTGACGAGATGGTGGCACTTGCCAAGACTGACGGCTACAAAGCACCGGAGCTTCAAAGAATGAAGAAATGTAACTCGAGGACCGACGTTTACGCGTTCGGTATATTACTTCTCGAAATCTTGATCGGTAAGAAGCCTGGTAAGAACGGAAGAAGCGGTGAGTACGTGGATTTACCTTCGATGGTGAAAGTAGCGGTTCTGGAGGAGACAACAATGGAAGTATTCGATGTGGAACTGTTGAAAGGGATAAGAAGTCCGATGGAAGACGGTTTGGTTCAGGCACTGAAGCTAGCAATGGGATGTTGTGCACCTGTGGCATCGGTTAGACCGAGTATGGAAGAAGTTGTGAGGCAATTGGAGGAGAATAGACCAAGGAACAGGTCTGCTTTATACAGTCCTACTGAGACAAGAAGTGGAAGTATTACACCGTTTTGA
Protein sequence

>MsG0780038651.01.T01

MIPSIADEMVALAKTDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKNGRSGEYVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMEEVVRQLEENRPRNRSALYSPTETRSGSITPF*