AlfalfaGEDB | MsG0780038659.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038659.01

KEGG: -
GO: GO:0003677
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038659.01.T01	XP_039683994.1	80.925	692	52	6	1	620	65	748	0	1021

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038659.01.T01	Q01593	39.441	644	258	24	41	619	118	694	1.54E-97	318

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038659.01.T01	A0A072U0Z8	81.159	690	52	6	1	620	65	746	0.0	1021

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TFs/TRs:

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Gene ID	Type	Classification
MsG0780038659.01.T01	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038659.01.T01	MTR_7g059330	81.159	690	52	6	1	620	65	746	0.0	1021
MsG0780038659.01.T01	MTR_8g470990	70.370	54	14	1	145	198	40	91	1.05e-16	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038659.01.T01	AT3G24650	39.441	644	258	24	41	619	118	694	1.57e-98	318
MsG0780038659.01.T01	AT3G26790	37.500	128	61	4	491	602	72	196	2.14e-15	78.2
MsG0780038659.01.T01	AT1G28300	34.884	129	63	4	508	619	165	289	1.41e-12	70.1

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Find 136 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATTTGCCAGAATGG+AGG	0.647377	7:-50629862	MsG0780038659.01.T01:CDS
AAACTACAATCAATCATTTG+TGG	0.501306	7:-50631011	MsG0780038659.01.T01:CDS
AAAGTGATGTGGGAAGTCTG+GGG	0.734540	7:-50630002	MsG0780038659.01.T01:CDS
AAATTCAGTTGGAACTGCAG+TGG	0.605678	7:-50628801	MsG0780038659.01.T01:CDS
AACAATGTGCTACAACCTCA+TGG	0.560848	7:-50630979	MsG0780038659.01.T01:intron
AACAGCCCAAGAAGCTGCAG+AGG	0.555739	7:+50632093	None:intergenic
AACCATCATCAGAATATTCA+AGG	0.441107	7:-50630793	MsG0780038659.01.T01:CDS
AACCTTGAATATTCTGATGA+TGG	0.426625	7:+50630791	None:intergenic
AAGGCTAATGGACTCCAAGA+AGG	0.600158	7:-50629519	MsG0780038659.01.T01:CDS
AAGTGCACCCGATAGGAGAC+AGG	0.539885	7:-50630557	MsG0780038659.01.T01:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCATACCAAACCAAC+CGG	-	Chr7:50631613-50631632	MsG0780038659.01.T01:CDS	30.0%
AAATCATTACTTTGTTGCCA+CGG	-	Chr7:50631581-50631600	MsG0780038659.01.T01:intron	30.0%
AACCATCATCAGAATATTCA+AGG	-	Chr7:50630147-50630166	MsG0780038659.01.T01:intron	30.0%
AACCTTGAATATTCTGATGA+TGG	+	Chr7:50630152-50630171	None:intergenic	30.0%
AGATGGAATTTCGATTACAA+TGG	-	Chr7:50631105-50631124	MsG0780038659.01.T01:CDS	30.0%
AGTAACATGCATCAAAAACA+TGG	-	Chr7:50628906-50628925	MsG0780038659.01.T01:intron	30.0%
AGTATTCAAGGAGATGAATT+AGG	-	Chr7:50629344-50629363	MsG0780038659.01.T01:intron	30.0%
ATATATTCTGATGTGAAGTG+TGG	-	Chr7:50631457-50631476	MsG0780038659.01.T01:CDS	30.0%
ATGATATATGACCACAATTG+TGG	+	Chr7:50630614-50630633	None:intergenic	30.0%
ATTGCAAAAACATCAGAAAG+AGG	-	Chr7:50631052-50631071	MsG0780038659.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	50628741	50632221	50628741	ID=MsG0780038659.01;Name=MsG0780038659.01
Chr7	mRNA	50628741	50632221	50628741	ID=MsG0780038659.01.T01;Parent=MsG0780038659.01;Name=MsG0780038659.01.T01;_AED=0.18;_eAED=0.27;_QI=0\|0\|0\|1\|0.83\|0.71\|7\|0\|650
Chr7	exon	50631583	50632221	50631583	ID=MsG0780038659.01.T01:exon:5601;Parent=MsG0780038659.01.T01
Chr7	exon	50630980	50631491	50630980	ID=MsG0780038659.01.T01:exon:5600;Parent=MsG0780038659.01.T01
Chr7	exon	50630558	50630912	50630558	ID=MsG0780038659.01.T01:exon:5599;Parent=MsG0780038659.01.T01
Chr7	exon	50629984	50630076	50629984	ID=MsG0780038659.01.T01:exon:5598;Parent=MsG0780038659.01.T01
Chr7	exon	50629795	50629894	50629795	ID=MsG0780038659.01.T01:exon:5597;Parent=MsG0780038659.01.T01
Chr7	exon	50629476	50629552	50629476	ID=MsG0780038659.01.T01:exon:5596;Parent=MsG0780038659.01.T01
Chr7	exon	50628741	50628917	50628741	ID=MsG0780038659.01.T01:exon:5595;Parent=MsG0780038659.01.T01
Chr7	CDS	50631583	50632221	50631583	ID=MsG0780038659.01.T01:cds;Parent=MsG0780038659.01.T01
Chr7	CDS	50630980	50631491	50630980	ID=MsG0780038659.01.T01:cds;Parent=MsG0780038659.01.T01
Chr7	CDS	50630558	50630912	50630558	ID=MsG0780038659.01.T01:cds;Parent=MsG0780038659.01.T01
Chr7	CDS	50629984	50630076	50629984	ID=MsG0780038659.01.T01:cds;Parent=MsG0780038659.01.T01
Chr7	CDS	50629795	50629894	50629795	ID=MsG0780038659.01.T01:cds;Parent=MsG0780038659.01.T01
Chr7	CDS	50629476	50629552	50629476	ID=MsG0780038659.01.T01:cds;Parent=MsG0780038659.01.T01
Chr7	CDS	50628741	50628917	50628741	ID=MsG0780038659.01.T01:cds;Parent=MsG0780038659.01.T01

Gene Sequence

>MsG0780038659.01.T01

ATGTCATCATCATCTTCATCTTCATCATCTTCAACACCATTGAAAACCATTGCATGTACTTCAACTACAACAACTACTACCTCTTCTTCTTCCTCAGCTTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGATGTTGAAGTAGATCATCAAGGTTATAGTAACATGCATCAAAAACATGGTCATCCATTAGATTATCATCATGGTCATCCTCCAACAACTTTGTCATCAACTGCTTCTATGGAGATTTCTCAACAACAGCAACAAGATCTTGGTGTTTCGAATAATGATGTTGTTGTTGGTGGTGGTGATTGCATGGATGATGTTAACATTATGGATACTTTTGGTTACATGGAGCTTTTAGAAGCTAATGAATTTTTTGACCCTGCTTCGATTTTTCAAAATGAAGATGAAAGCCCTTTAGTGGATTTCACACAAGAGCAACAAGTTCAAGTGCAAGACGGATATCAACAACAACAACAACATCAACAAGTTCCGATGATAGTGCACGATGATAGGGAAAATAAACCGCAACAAGTGAATATCGAGGAGAATAACGACGATGTTTTTTGTGTGGACGGTGTAAATGGGGAAGAGAGTATTCAAGGAGATGAATTAGGTGCATGTGATGGTAAATCGACAATCGAAAGTGCTGCTAAGAGATTAGGTGGTGGAAAAGAAGGGATGAAACAATTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAAAACAAAAGGCTCAAAGAAAACACCAACATTAACACAATAATACCTTCAAATCTTGTTCCTCAACAACAACAGTTTCAAGATCCATGTCAGAACCAAAACACAGCAAACACTTTTGCACCTGAATCGAACGCGTGTTTCAACCAAACATCATGGCTAGATCAAACACCTCTCATTGTACCTCCACAACAATTTTCACAACCAATGGTTGGAGTTGGAGTTGGATTTGTTGCTGATCCTTACACAAATGGTTCTGTTTCAAATAACATTAACCCTTACCAACCTGCTGCTACTAATGACTATCACATGTTGGAATCAAATCATTCATGGGGTGCTTCTCAATTCAATGTTGCACCAAACTACAATCAATCATTTGTGGAAAAACAACAACAATGTGCTACAACCTCATGGTTGATGAGGTTAGGTCCTTCTGCTACAAAAGAAGCTAGAAAGAAGAGGATGGCTCGGCAACGGCGGTTTATGTCTCATCATAGGCATCATAATAATAACCATCATCAGAATATTCAAGGTTCTGATCCACTTGCAAGATTAGGTGCTGGTGATAATTGCACCAATGTTGCTGCTGGTGGTTCTCATACAAATCCAGGTAACTGGATGTATTGGCAGACTATGACTGGTGGGACAGCAGCTTCCTTGGCTCCTGTTGTTCCGGCTGAGCCGACGCAGCCTGCAGTAGATCGTGATCGCCCCACCATACAGACACAGAATTCTCACCAGGGCCGAAGTGCACCCGATAGGAGACAGGGTTGGAAGCCTGAAAAGAATTTGAGGTTCCTTCTACAAAAGGTTTTGAAGCAAAGTGATGTGGGAAGTCTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACACATTTGCCAGAATGGAGGCAAGAGATGGAATTTCGATTACAATGGAAGACATTGGAACTTCTCGTGTTTGGAATATGCGATATAGGTGACTTTGTGAAGGCTAATGGACTCCAAGAAGGAGATTTCATAGTGATATATTCTGATGTGAAGTGTGGCAAATTTATGATAAGGGGAGTTAAAGTGAGGCAACAAGGAACAAAACCAGAGGCAAAAAAATCAGGAAAATCACAGAAAAACCAGCATGGAATAATGCATCAAATTCAGTTGGAACTGCAGTGGATAATAATGGCATGCCATCTTCACCAAAGCGAAAAAAATGAAAAGATATCAATTAATTAA

Protein sequence

>MsG0780038659.01.T01

MSSSSSSSSSSTPLKTIACTSTTTTTTSSSSSASSSSAASWAVLKSDVEVDHQGYSNMHQKHGHPLDYHHGHPPTTLSSTASMEISQQQQQDLGVSNNDVVVGGGDCMDDVNIMDTFGYMELLEANEFFDPASIFQNEDESPLVDFTQEQQVQVQDGYQQQQQHQQVPMIVHDDRENKPQQVNIEENNDDVFCVDGVNGEESIQGDELGACDGKSTIESAAKRLGGGKEGMKQLLKLILEWVQTSHLQNKRLKENTNINTIIPSNLVPQQQQFQDPCQNQNTANTFAPESNACFNQTSWLDQTPLIVPPQQFSQPMVGVGVGFVADPYTNGSVSNNINPYQPAATNDYHMLESNHSWGASQFNVAPNYNQSFVEKQQQCATTSWLMRLGPSATKEARKKRMARQRRFMSHHRHHNNNHHQNIQGSDPLARLGAGDNCTNVAAGGSHTNPGNWMYWQTMTGGTAASLAPVVPAEPTQPAVDRDRPTIQTQNSHQGRSAPDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPEWRQEMEFRLQWKTLELLVFGICDIGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQGTKPEAKKSGKSQKNQHGIMHQIQLELQWIIMACHLHQSEKNEKISIN*