AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038679.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038679.01.T01 MTR_2g094720 44.910 167 48 3 4 126 2 168 9.88e-24 90.1
MsG0780038679.01.T01 MTR_6g471120 44.910 167 48 3 4 126 2 168 1.12e-23 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038679.01.T01 AT5G03500 74.627 67 17 0 4 70 2 68 5.88e-23 88.2
MsG0780038679.01.T01 AT5G03500 74.627 67 17 0 4 70 2 68 5.88e-23 88.2
MsG0780038679.01.T01 AT5G03500 74.627 67 17 0 4 70 2 68 5.88e-23 88.2
MsG0780038679.01.T01 AT5G03500 74.627 67 17 0 4 70 2 68 5.88e-23 88.2
MsG0780038679.01.T01 AT5G03500 74.627 67 17 0 4 70 2 68 5.88e-23 88.2
MsG0780038679.01.T01 AT5G03500 74.627 67 17 0 4 70 2 68 5.88e-23 88.2
MsG0780038679.01.T01 AT5G03500 74.627 67 17 0 4 70 12 78 6.01e-23 88.6
MsG0780038679.01.T01 AT5G03220 76.119 67 16 0 4 70 2 68 5.47e-18 75.5

Find 45 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACCTATCTTTACATTTC+CGG 0.207099 7:-51081645 MsG0780038679.01.T01:CDS
TAGACTTTACAAAGATTATT+TGG 0.215011 7:-51085208 MsG0780038679.01.T01:CDS
GAACGAACTTACATTTGTTT+TGG 0.294354 7:-51085147 MsG0780038679.01.T01:CDS
GCAACACTCAATGGCCATTA+AGG 0.316879 7:-51081586 None:intergenic
CAAATGTAAGTTCGTTCAAT+TGG 0.354107 7:+51085153 None:intergenic
CAAATGGTGGGACACCTTCC+CGG 0.388767 7:-51081719 MsG0780038679.01.T01:CDS
CAAGCTTGGTAGAACGTTGC+TGG 0.394816 7:+51083891 None:intergenic
TCTTTGTAAAGTCTATAATA+AGG 0.395036 7:+51085216 None:intergenic
CTATAATAAGGTGGTGGTGG+TGG 0.415430 7:+51085228 None:intergenic
CGGGAAGGTGTCCCACCATT+TGG 0.420513 7:+51081720 None:intergenic
ACCCCTTGTTCTTCCAAGCT+TGG 0.428579 7:+51083877 None:intergenic
GTACCAACATTCGGCCCCTT+AGG 0.445839 7:+51083841 None:intergenic
GGTGCGCCAGCTCTATCCTA+AGG 0.462951 7:-51083857 MsG0780038679.01.T01:CDS
TCAATTGGCAGAGGAGGCTC+TGG 0.469875 7:+51085168 None:intergenic
TTCCCGGACCTTGCGTATGC+GGG 0.470864 7:-51081703 MsG0780038679.01.T01:CDS
GCTCCCGCATACGCAAGGTC+CGG 0.474282 7:+51081700 None:intergenic
CTCCCGCATACGCAAGGTCC+GGG 0.487546 7:+51081701 None:intergenic
GTGCGCCAGCTCTATCCTAA+GGG 0.493280 7:-51083856 MsG0780038679.01.T01:CDS
AAAGATAGTGTACCAACATT+CGG 0.501342 7:+51083832 None:intergenic
TATAATAAGGTGGTGGTGGT+GGG 0.505040 7:+51085229 None:intergenic
CAGCAACGTTCTACCAAGCT+TGG 0.511434 7:-51083890 MsG0780038679.01.T01:CDS
CTCTCCGGAAATGTAAAGAT+AGG 0.516567 7:+51081641 None:intergenic
GATGCGTACAATACACCAAA+TGG 0.522967 7:-51081735 MsG0780038679.01.T01:CDS
CGGAAATGTAAAGATAGGTC+AGG 0.524198 7:+51081646 None:intergenic
AGTCTATAATAAGGTGGTGG+TGG 0.525802 7:+51085225 None:intergenic
CTTCCCGGACCTTGCGTATG+CGG 0.527703 7:-51081704 MsG0780038679.01.T01:CDS
GTCTTCGAGTTACTTCTCTC+CGG 0.532248 7:+51081626 None:intergenic
CTACCAAGCTTGGAAGAACA+AGG 0.537348 7:-51083880 MsG0780038679.01.T01:CDS
ATGGCCATTGAGTGTTGCTA+AGG 0.541413 7:+51081591 None:intergenic
TGCGGGAGCTTCAGTGCACC+TGG 0.548990 7:-51081686 MsG0780038679.01.T01:CDS
TATCCTAAGGGGCCGAATGT+TGG 0.551939 7:-51083844 MsG0780038679.01.T01:intron
GAGTCCTTAGCAACACTCAA+TGG 0.560698 7:-51081595 MsG0780038679.01.T01:CDS
TAAGTTCGTTCAATTGGCAG+AGG 0.575023 7:+51085159 None:intergenic
CGCATACGCAAGGTCCGGGA+AGG 0.576825 7:+51081705 None:intergenic
GTTCGTTCAATTGGCAGAGG+AGG 0.585530 7:+51085162 None:intergenic
TCGGCCCCTTAGGATAGAGC+TGG 0.588841 7:+51083851 None:intergenic
TAAAGTCTATAATAAGGTGG+TGG 0.589868 7:+51085222 None:intergenic
CTGAAGCTCCCGCATACGCA+AGG 0.598081 7:+51081695 None:intergenic
GCGTACAATACACCAAATGG+TGG 0.608491 7:-51081732 MsG0780038679.01.T01:CDS
ACCAAGCTTGGAAGAACAAG+GGG 0.615522 7:-51083878 MsG0780038679.01.T01:CDS
TGCGCCAGCTCTATCCTAAG+GGG 0.635514 7:-51083855 MsG0780038679.01.T01:CDS
GAAAGACTAATGACAATACC+AGG 0.642166 7:+51081668 None:intergenic
TACCAAGCTTGGAAGAACAA+GGG 0.654458 7:-51083879 MsG0780038679.01.T01:CDS
TTGTAAAGTCTATAATAAGG+TGG 0.661420 7:+51085219 None:intergenic
CGTACAATACACCAAATGGT+GGG 0.668975 7:-51081731 MsG0780038679.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAAATCAAATAACAA+GGG + Chr7:51083788-51083807 None:intergenic 10.0%
!!! GTAAATTTAAAATAGTTTAA+TGG + Chr7:51082392-51082411 None:intergenic 10.0%
!! AAAAAATAAAACTTTATGCA+AGG - Chr7:51082687-51082706 MsG0780038679.01.T01:intron 15.0%
!! ATAGAAATATCAAAATCATA+AGG + Chr7:51081750-51081769 None:intergenic 15.0%
!! ATATAAAATCAAATAACAAG+GGG + Chr7:51083787-51083806 None:intergenic 15.0%
!! CTATATAAAATCAAATAACA+AGG + Chr7:51083789-51083808 None:intergenic 15.0%
!!! AAGTTTTATTTTTTCCAATT+TGG + Chr7:51082681-51082700 None:intergenic 15.0%
!!! AATTTGTAAGATTTTATAGT+TGG - Chr7:51084867-51084886 MsG0780038679.01.T01:intron 15.0%
!!! AGTTTTATTTTTTCCAATTT+GGG + Chr7:51082680-51082699 None:intergenic 15.0%
!!! GTTATTTAAGTTTTATCTTT+CGG - Chr7:51082529-51082548 MsG0780038679.01.T01:intron 15.0%
!!! TTATGATTTTGATATTTCTA+TGG - Chr7:51081749-51081768 MsG0780038679.01.T01:intron 15.0%
!! AACTAAAAAATAACATAACC+AGG + Chr7:51082512-51082531 None:intergenic 20.0%
!! ACTAAAAAATAACATAACCA+GGG + Chr7:51082511-51082530 None:intergenic 20.0%
!! ATTAAACTAGTTCATTCTTT+CGG - Chr7:51084675-51084694 MsG0780038679.01.T01:intron 20.0%
!! CAAATCAATTTCAAAATGTT+GGG + Chr7:51082300-51082319 None:intergenic 20.0%
!! CTATAAAATCTAGAAAAAGA+GGG + Chr7:51084906-51084925 None:intergenic 20.0%
!! GAATTTATCACAAAACAATA+TGG + Chr7:51082484-51082503 None:intergenic 20.0%
!! TAGAAAATATATTAGGCATA+AGG + Chr7:51082619-51082638 None:intergenic 20.0%
!! TAGACTTTACAAAGATTATT+TGG - Chr7:51081632-51081651 MsG0780038679.01.T01:CDS 20.0%
!! TATAAAATCAAATAACAAGG+GGG + Chr7:51083786-51083805 None:intergenic 20.0%
!! TATAAAATCTAGAAAAAGAG+GGG + Chr7:51084905-51084924 None:intergenic 20.0%
!! TATGTATCTATAAGCATATA+AGG - Chr7:51084528-51084547 MsG0780038679.01.T01:intron 20.0%
!! TCAAATCAATTTCAAAATGT+TGG + Chr7:51082301-51082320 None:intergenic 20.0%
!! TCTTTGTAAAGTCTATAATA+AGG + Chr7:51081627-51081646 None:intergenic 20.0%
!!! AATTGTTGTTTTTGAAAACT+CGG - Chr7:51083110-51083129 MsG0780038679.01.T01:intron 20.0%
!!! AGGAAATTAGTCTATTTAAA+CGG + Chr7:51084785-51084804 None:intergenic 20.0%
!!! ATTATTTTTAACGAATCACA+TGG + Chr7:51083093-51083112 None:intergenic 20.0%
!!! ATTTTATATAGACTTCAAGA+AGG - Chr7:51083798-51083817 MsG0780038679.01.T01:intron 20.0%
!!! GTTGCTTTATGTTTTAAATA+TGG - Chr7:51084752-51084771 MsG0780038679.01.T01:intron 20.0%
!!! GTTTTATTTTTTCCAATTTG+GGG + Chr7:51082679-51082698 None:intergenic 20.0%
!!! TTGTTTTTGTATAGTTATCT+TGG + Chr7:51081932-51081951 None:intergenic 20.0%
!!! TTTTATTTTTTCCAATTTGG+GGG + Chr7:51082678-51082697 None:intergenic 20.0%
!!! TTTTTTTATAGGGTTATGAT+TGG - Chr7:51082455-51082474 MsG0780038679.01.T01:intron 20.0%
! AAATAAAACTTTATGCAAGG+TGG - Chr7:51082690-51082709 MsG0780038679.01.T01:intron 25.0%
! AAATCCAACTAAAAATCACA+AGG + Chr7:51081776-51081795 None:intergenic 25.0%
! AAGCAAGCATTATATAAAAG+AGG + Chr7:51084935-51084954 None:intergenic 25.0%
! AATCCAACTAAAAATCACAA+GGG + Chr7:51081775-51081794 None:intergenic 25.0%
! ACAGAAAGTAAAAAAACTGT+AGG + Chr7:51083174-51083193 None:intergenic 25.0%
! ATACCACTAAGGAAAATATT+AGG + Chr7:51084168-51084187 None:intergenic 25.0%
! ATACGAAGCAATGATTATTT+AGG + Chr7:51083673-51083692 None:intergenic 25.0%
! ATTGAGAAACTTCTACAAAA+TGG - Chr7:51084587-51084606 MsG0780038679.01.T01:intron 25.0%
! ATTGGTGAATGATTGAATTT+AGG - Chr7:51082789-51082808 MsG0780038679.01.T01:intron 25.0%
! CAAAAATACACTTACAAAAG+TGG + Chr7:51082104-51082123 None:intergenic 25.0%
! CCTATAAAATCTAGAAAAAG+AGG + Chr7:51084907-51084926 None:intergenic 25.0%
! CTAAAAAATAACATAACCAG+GGG + Chr7:51082510-51082529 None:intergenic 25.0%
! GTTTAATGGTCATAAACTAT+CGG + Chr7:51082378-51082397 None:intergenic 25.0%
! TAAAAAATAACATAACCAGG+GGG + Chr7:51082509-51082528 None:intergenic 25.0%
! TACAAAATGAGTTAAATCCA+CGG + Chr7:51084350-51084369 None:intergenic 25.0%
! TCTCAATTAAAATATGTCTG+CGG + Chr7:51084574-51084593 None:intergenic 25.0%
! TTAAACTAGTTCATTCTTTC+GGG - Chr7:51084676-51084695 MsG0780038679.01.T01:intron 25.0%
! TTAACTGCTCAATTTGAATT+TGG - Chr7:51083046-51083065 MsG0780038679.01.T01:intron 25.0%
! TTAATGATTCAGTAAATCTG+CGG + Chr7:51084660-51084679 None:intergenic 25.0%
! TTGTAAAGTCTATAATAAGG+TGG + Chr7:51081624-51081643 None:intergenic 25.0%
!! CCTCTTTTTCTAGATTTTAT+AGG - Chr7:51084904-51084923 MsG0780038679.01.T01:intron 25.0%
!! TTTCCTAATATTTTCCTTAG+TGG - Chr7:51084162-51084181 MsG0780038679.01.T01:intron 25.0%
!!! ATCAACATTGATTCACATTA+TGG - Chr7:51084098-51084117 MsG0780038679.01.T01:intron 25.0%
!!! GGAGCTTTTAAAAATTTTGT+TGG - Chr7:51084252-51084271 MsG0780038679.01.T01:intron 25.0%
!!! GGTTGGTATGTTTTTTTATA+GGG - Chr7:51082445-51082464 MsG0780038679.01.T01:intron 25.0%
!!! GTGATTTTTAGTTGGATTTA+AGG - Chr7:51081777-51081796 MsG0780038679.01.T01:intron 25.0%
!!! TGGTTGGTATGTTTTTTTAT+AGG - Chr7:51082444-51082463 MsG0780038679.01.T01:intron 25.0%
!!! TGTTTCTTTTTTCGTTTTCA+GGG - Chr7:51084035-51084054 MsG0780038679.01.T01:intron 25.0%
!!! TTATGACAGTTTTGTTCAAA+AGG - Chr7:51081880-51081899 MsG0780038679.01.T01:intron 25.0%
!!! TTGTTTCTTTTTTCGTTTTC+AGG - Chr7:51084034-51084053 MsG0780038679.01.T01:intron 25.0%
AAAGATAGTGTACCAACATT+CGG + Chr7:51083011-51083030 None:intergenic 30.0%
ACCCAAAACATTAAGACAAT+GGG + Chr7:51082202-51082221 None:intergenic 30.0%
AGAAGATTTAATACCTGATG+AGG + Chr7:51083970-51083989 None:intergenic 30.0%
ATAAGAACAAAAGATTGCCT+AGG + Chr7:51084197-51084216 None:intergenic 30.0%
ATTACAACTTTGAACAAACC+AGG - Chr7:51083543-51083562 MsG0780038679.01.T01:intron 30.0%
ATTTAACCTTCCGTATAATG+TGG - Chr7:51084457-51084476 MsG0780038679.01.T01:intron 30.0%
CAAACAGATAAATAGTCCTT+CGG + Chr7:51082859-51082878 None:intergenic 30.0%
CAAATGTAAGTTCGTTCAAT+TGG + Chr7:51081690-51081709 None:intergenic 30.0%
CACAAATGAAGGTTATATGA+AGG + Chr7:51084824-51084843 None:intergenic 30.0%
CTTACAAAAGTGGAGTAATA+TGG + Chr7:51082094-51082113 None:intergenic 30.0%
CTTACAAATTAGACCAATCA+AGG + Chr7:51084857-51084876 None:intergenic 30.0%
GAAAAAAGAAAGGATAAAGG+AGG + Chr7:51082724-51082743 None:intergenic 30.0%
GAAACAAGCATGAAAATGAA+AGG + Chr7:51084021-51084040 None:intergenic 30.0%
GGTCTTTCAATAAGAATATC+AGG + Chr7:51083871-51083890 None:intergenic 30.0%
GTCTCTTTACACTTAAATGA+TGG + Chr7:51084300-51084319 None:intergenic 30.0%
GTTTATTCAACCAAGACTTA+TGG - Chr7:51082025-51082044 MsG0780038679.01.T01:intron 30.0%
TAAAAGAATCTTATCATGCC+TGG - Chr7:51084434-51084453 MsG0780038679.01.T01:intron 30.0%
TAAAATAAATGCCGTAACCT+TGG - Chr7:51083264-51083283 MsG0780038679.01.T01:intron 30.0%
TAAAGTCTATAATAAGGTGG+TGG + Chr7:51081621-51081640 None:intergenic 30.0%
TAAGAACAAAAGATTGCCTA+GGG + Chr7:51084196-51084215 None:intergenic 30.0%
TAATCCAAACTAGGTAACAA+AGG - Chr7:51084614-51084633 MsG0780038679.01.T01:intron 30.0%
TACCCAAAACATTAAGACAA+TGG + Chr7:51082203-51082222 None:intergenic 30.0%
TATTACGTACCTCTTTATTG+CGG + Chr7:51084140-51084159 None:intergenic 30.0%
TCCACTATTCTAAACAATGT+AGG + Chr7:51082155-51082174 None:intergenic 30.0%
! AACCCATTGTCTTAATGTTT+TGG - Chr7:51082197-51082216 MsG0780038679.01.T01:intron 30.0%
! ACATTAAGACAATGGGTTTA+TGG + Chr7:51082195-51082214 None:intergenic 30.0%
! ACCCATTGTCTTAATGTTTT+GGG - Chr7:51082198-51082217 MsG0780038679.01.T01:intron 30.0%
! ATCTTTCACACTTTCAGTTT+TGG - Chr7:51083232-51083251 MsG0780038679.01.T01:intron 30.0%
! CATTAAGACAATGGGTTTAT+GGG + Chr7:51082194-51082213 None:intergenic 30.0%
! GAACGAACTTACATTTGTTT+TGG - Chr7:51081693-51081712 MsG0780038679.01.T01:CDS 30.0%
! GATTTGATGACACGAAAAAA+TGG - Chr7:51082314-51082333 MsG0780038679.01.T01:intron 30.0%
! TACATTGTTTAGAATAGTGG+AGG - Chr7:51082154-51082173 MsG0780038679.01.T01:intron 30.0%
! TCCTACATTGTTTAGAATAG+TGG - Chr7:51082151-51082170 MsG0780038679.01.T01:intron 30.0%
! TTCTATCTAAAGTCTAAACC+TGG + Chr7:51084382-51084401 None:intergenic 30.0%
!! ATAAGGTTTTCTCTTGTTTG+GGG + Chr7:51082602-51082621 None:intergenic 30.0%
!! ATAAGTTTTGTGACACTGAT+TGG - Chr7:51081838-51081857 MsG0780038679.01.T01:intron 30.0%
!! CATAAGGTTTTCTCTTGTTT+GGG + Chr7:51082603-51082622 None:intergenic 30.0%
!! TAAGTTTTGTGACACTGATT+GGG - Chr7:51081839-51081858 MsG0780038679.01.T01:intron 30.0%
!! TAATGTTTTGGGTAAAAGTG+TGG - Chr7:51082209-51082228 MsG0780038679.01.T01:intron 30.0%
AAAATCTAGAAAAAGAGGGG+AGG + Chr7:51084902-51084921 None:intergenic 35.0%
AAATCTAGAAAAAGAGGGGA+GGG + Chr7:51084901-51084920 None:intergenic 35.0%
AAATTCATTGCATCCTCATC+AGG - Chr7:51083954-51083973 MsG0780038679.01.T01:intron 35.0%
AATCACTCGCATTATGACAT+GGG + Chr7:51083716-51083735 None:intergenic 35.0%
AATGGAAGCTAATCCAAACT+AGG - Chr7:51084605-51084624 MsG0780038679.01.T01:intron 35.0%
ACAAATTAGACCAATCAAGG+AGG + Chr7:51084854-51084873 None:intergenic 35.0%
ACGTCATGTATTTACTCTGT+AGG - Chr7:51084071-51084090 MsG0780038679.01.T01:intron 35.0%
AGCAATGATTATTTAGGCAG+TGG + Chr7:51083667-51083686 None:intergenic 35.0%
ATCACATTCACATCAGTCAT+TGG - Chr7:51083474-51083493 MsG0780038679.01.T01:intron 35.0%
ATGAGTGCTTTCTATCTAGT+TGG - Chr7:51082424-51082443 MsG0780038679.01.T01:intron 35.0%
ATGTCCTTTGTTACCTAGTT+TGG + Chr7:51084621-51084640 None:intergenic 35.0%
ATTTCATTGTAGGAAAGAGC+GGG - Chr7:51083499-51083518 MsG0780038679.01.T01:intron 35.0%
CAATGCATATCCATAAGTCT+TGG + Chr7:51082038-51082057 None:intergenic 35.0%
CTGACCTATCTTTACATTTC+CGG - Chr7:51085195-51085214 MsG0780038679.01.T01:CDS 35.0%
CTGGTCTATGTAAACATCAA+AGG + Chr7:51082933-51082952 None:intergenic 35.0%
GAAAGACTAATGACAATACC+AGG + Chr7:51085175-51085194 None:intergenic 35.0%
GAATTTAGGCTATTACCACA+GGG - Chr7:51082803-51082822 MsG0780038679.01.T01:intron 35.0%
GATTTCATTGTAGGAAAGAG+CGG - Chr7:51083498-51083517 MsG0780038679.01.T01:intron 35.0%
GCAATGATTATTTAGGCAGT+GGG + Chr7:51083666-51083685 None:intergenic 35.0%
GGGGAAAAAAGAAAGGATAA+AGG + Chr7:51082727-51082746 None:intergenic 35.0%
GGTTTCTTTGTATAGGTTTG+CGG - Chr7:51082824-51082843 MsG0780038679.01.T01:intron 35.0%
GTAGCTCAACTGATCATATA+AGG + Chr7:51083593-51083612 None:intergenic 35.0%
GTATGTAGTGACATAACATG+TGG + Chr7:51083451-51083470 None:intergenic 35.0%
GTCATTGGAGATTTCATTGT+AGG - Chr7:51083489-51083508 MsG0780038679.01.T01:intron 35.0%
GTTTCTTTGTATAGGTTTGC+GGG - Chr7:51082825-51082844 MsG0780038679.01.T01:intron 35.0%
TAAAACTTTATGCAAGGTGG+AGG - Chr7:51082693-51082712 MsG0780038679.01.T01:intron 35.0%
TAAGTGTGTGTGCTATAAGT+TGG - Chr7:51081993-51082012 MsG0780038679.01.T01:intron 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - Chr7:51085083-51085102 MsG0780038679.01.T01:intron 35.0%
TGAATTTAGGCTATTACCAC+AGG - Chr7:51082802-51082821 MsG0780038679.01.T01:intron 35.0%
TGACTGATGTGAATGTGATT+TGG + Chr7:51083473-51083492 None:intergenic 35.0%
TGTGAAAGATAAACCTACAG+AGG + Chr7:51083222-51083241 None:intergenic 35.0%
TTATAACCTGAAAGAGATCC+TGG + Chr7:51082892-51082911 None:intergenic 35.0%
TTATACGGAAGGTTAAATCC+AGG + Chr7:51084455-51084474 None:intergenic 35.0%
TTCACCAATTACTCCTCTTA+CGG + Chr7:51082778-51082797 None:intergenic 35.0%
TTTCTTTGTATAGGTTTGCG+GGG - Chr7:51082826-51082845 MsG0780038679.01.T01:intron 35.0%
! AATGTCCTTGCTGTGTTATA+TGG - Chr7:51084230-51084249 MsG0780038679.01.T01:intron 35.0%
! ACTTGTGTGCTCAATCTTTT+TGG - Chr7:51083310-51083329 MsG0780038679.01.T01:intron 35.0%
! AGAACTGCAACTACACATTT+TGG - Chr7:51083840-51083859 MsG0780038679.01.T01:intron 35.0%
! ATGTCCTTGCTGTGTTATAT+GGG - Chr7:51084231-51084250 MsG0780038679.01.T01:intron 35.0%
! GCATAAGGTTTTCTCTTGTT+TGG + Chr7:51082604-51082623 None:intergenic 35.0%
! GGAGTTATAAGGGTTTGTTT+GGG - Chr7:51082558-51082577 MsG0780038679.01.T01:intron 35.0%
! TTGATGACACGAAAAAATGG+AGG - Chr7:51082317-51082336 MsG0780038679.01.T01:intron 35.0%
!! AAGTTTTATCTTTCGGTACG+TGG - Chr7:51082536-51082555 MsG0780038679.01.T01:intron 35.0%
!! AGTTTTATCTTTCGGTACGT+GGG - Chr7:51082537-51082556 MsG0780038679.01.T01:intron 35.0%
!! ATTGTCATTAGTCTTTCCTG+AGG - Chr7:51084986-51085005 MsG0780038679.01.T01:intron 35.0%
!! GTGTTGAGAAAGTACTACAT+TGG - Chr7:51083351-51083370 MsG0780038679.01.T01:intron 35.0%
!! GTTTTTGAAAACTCGGTATC+CGG - Chr7:51083117-51083136 MsG0780038679.01.T01:intron 35.0%
!! TAAGGTTTTCTCTTGTTTGG+GGG + Chr7:51082601-51082620 None:intergenic 35.0%
!! TTGTCATTAGTCTTTCCTGA+GGG - Chr7:51084987-51085006 MsG0780038679.01.T01:intron 35.0%
!!! CGAACTTACATTTGTTTTGG+TGG - Chr7:51081696-51081715 MsG0780038679.01.T01:CDS 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + Chr7:51085084-51085103 None:intergenic 35.0%
AAAATAACATAACCAGGGGG+AGG + Chr7:51082506-51082525 None:intergenic 40.0%
AAACCAGGTTCTCTCAATTC+TGG - Chr7:51083558-51083577 MsG0780038679.01.T01:intron 40.0%
AACCTTCCGTATAATGTGGA+TGG - Chr7:51084461-51084480 MsG0780038679.01.T01:intron 40.0%
AAGGTGACGTGTGTTATCAA+AGG + Chr7:51084805-51084824 None:intergenic 40.0%
AATAAATGCCGTAACCTTGG+AGG - Chr7:51083267-51083286 MsG0780038679.01.T01:intron 40.0%
AATTCTCATGAAGCTCTCGT+GGG - Chr7:51084400-51084419 MsG0780038679.01.T01:intron 40.0%
ACAAAGAAGTCATGCAGAGT+TGG + Chr7:51084509-51084528 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - Chr7:51085077-51085096 MsG0780038679.01.T01:intron 40.0%
ACCACAGGGTTTCTTTGTAT+AGG - Chr7:51082817-51082836 MsG0780038679.01.T01:intron 40.0%
ACCTATACAAAGAAACCCTG+TGG + Chr7:51082821-51082840 None:intergenic 40.0%
ACTCTTCTTGCATACTGTGA+TGG + Chr7:51083892-51083911 None:intergenic 40.0%
AGAATTGAGTTCCCCCAAAT+TGG - Chr7:51082664-51082683 MsG0780038679.01.T01:intron 40.0%
AGACTATACAATCACCTCCA+AGG + Chr7:51083284-51083303 None:intergenic 40.0%
AGAGGACCATCCACATTATA+CGG + Chr7:51084470-51084489 None:intergenic 40.0%
ATTGGGATGACTTACGAAAG+CGG - Chr7:51081856-51081875 MsG0780038679.01.T01:intron 40.0%
CAAAGAAGTCATGCAGAGTT+GGG + Chr7:51084508-51084527 None:intergenic 40.0%
CAAGAACTGACTAATCCAAG+GGG - Chr7:51083142-51083161 MsG0780038679.01.T01:intron 40.0%
CAATCACTCGCATTATGACA+TGG + Chr7:51083717-51083736 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - Chr7:51085078-51085097 MsG0780038679.01.T01:intron 40.0%
CATGTCATAATGCGAGTGAT+TGG - Chr7:51083715-51083734 MsG0780038679.01.T01:intron 40.0%
CCAAGAACTGACTAATCCAA+GGG - Chr7:51083141-51083160 MsG0780038679.01.T01:intron 40.0%
CGGAAATGTAAAGATAGGTC+AGG + Chr7:51085197-51085216 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - Chr7:51085109-51085128 MsG0780038679.01.T01:intron 40.0%
CTAGGGTTTCTATACCACTA+AGG + Chr7:51084179-51084198 None:intergenic 40.0%
CTCACTTGTATGATTGCTCT+GGG - Chr7:51082239-51082258 MsG0780038679.01.T01:intron 40.0%
CTCTCCGGAAATGTAAAGAT+AGG + Chr7:51085202-51085221 None:intergenic 40.0%
CTTAGTGGTATAGAAACCCT+AGG - Chr7:51084177-51084196 MsG0780038679.01.T01:intron 40.0%
GAGGATTCTCTCACAAATGA+AGG + Chr7:51084835-51084854 None:intergenic 40.0%
GATGCGTACAATACACCAAA+TGG - Chr7:51085105-51085124 MsG0780038679.01.T01:intron 40.0%
GCAAGGACATTTCACTATGA+TGG + Chr7:51084221-51084240 None:intergenic 40.0%
GTCATGTGACTGTAAAGTCA+CGG - Chr7:51085039-51085058 MsG0780038679.01.T01:intron 40.0%
GTGCTTTCTATCTAGTTGGT+TGG - Chr7:51082428-51082447 MsG0780038679.01.T01:intron 40.0%
TAAGTTCGTTCAATTGGCAG+AGG + Chr7:51081684-51081703 None:intergenic 40.0%
TACAATCACCTCCAAGGTTA+CGG + Chr7:51083278-51083297 None:intergenic 40.0%
TACCAAGCTTGGAAGAACAA+GGG - Chr7:51082961-51082980 MsG0780038679.01.T01:intron 40.0%
TAGACTTCAAGAAGGAACTG+AGG - Chr7:51083806-51083825 MsG0780038679.01.T01:intron 40.0%
TATAATGTGGATGGTCCTCT+GGG - Chr7:51084470-51084489 MsG0780038679.01.T01:intron 40.0%
TCATGTGACTGTAAAGTCAC+GGG - Chr7:51085040-51085059 MsG0780038679.01.T01:intron 40.0%
TCCACGGTTTAGACTTAAGA+CGG + Chr7:51084334-51084353 None:intergenic 40.0%
TCTCACTTGTATGATTGCTC+TGG - Chr7:51082238-51082257 MsG0780038679.01.T01:intron 40.0%
TCTGTTTGTCTGTTATTGCC+AGG - Chr7:51082871-51082890 MsG0780038679.01.T01:intron 40.0%
TGGTCACAAAAGTCACTACA+TGG - Chr7:51083371-51083390 MsG0780038679.01.T01:intron 40.0%
TTACCAGAATTGAGAGAACC+TGG + Chr7:51083564-51083583 None:intergenic 40.0%
TTATTGCCAGGATCTCTTTC+AGG - Chr7:51082883-51082902 MsG0780038679.01.T01:intron 40.0%
TTCAAAATGTTGGGTCACGA+GGG + Chr7:51082291-51082310 None:intergenic 40.0%
TTGGTGGAAATTACACTGTG+AGG - Chr7:51081712-51081731 MsG0780038679.01.T01:CDS 40.0%
TTTCAAAATGTTGGGTCACG+AGG + Chr7:51082292-51082311 None:intergenic 40.0%
! ACCAAAACGAAGCATTCATG+TGG + Chr7:51083197-51083216 None:intergenic 40.0%
! AGTCTATAATAAGGTGGTGG+TGG + Chr7:51081618-51081637 None:intergenic 40.0%
! ATAAGGGTTTGTTTGGGAGA+AGG - Chr7:51082564-51082583 MsG0780038679.01.T01:intron 40.0%
! GGGAGTTATAAGGGTTTGTT+TGG - Chr7:51082557-51082576 MsG0780038679.01.T01:intron 40.0%
! TCCACATGAATGCTTCGTTT+TGG - Chr7:51083193-51083212 MsG0780038679.01.T01:intron 40.0%
!! CCTTGGATTAGTCAGTTCTT+GGG + Chr7:51083143-51083162 None:intergenic 40.0%
!! TATAATAAGGTGGTGGTGGT+GGG + Chr7:51081614-51081633 None:intergenic 40.0%
!! TGTCATTAGTCTTTCCTGAG+GGG - Chr7:51084988-51085007 MsG0780038679.01.T01:intron 40.0%
!! TTCGTTTTGGTAACCTCTGT+AGG - Chr7:51083206-51083225 MsG0780038679.01.T01:intron 40.0%
!!! CATTTTGTACTTCTAGAGCC+AGG - Chr7:51084361-51084380 MsG0780038679.01.T01:intron 40.0%
!!! TGGCCCTTGTGATTTTTAGT+TGG - Chr7:51081769-51081788 MsG0780038679.01.T01:intron 40.0%
AACTGTAGGTTTAGACCCCT+TGG + Chr7:51083160-51083179 None:intergenic 45.0%
ACCAAGCTTGGAAGAACAAG+GGG - Chr7:51082962-51082981 MsG0780038679.01.T01:intron 45.0%
ACCGTCTTAAGTCTAAACCG+TGG - Chr7:51084330-51084349 MsG0780038679.01.T01:intron 45.0%
AGCTCCCATATAACACAGCA+AGG + Chr7:51084238-51084257 None:intergenic 45.0%
CAAGCCGTAAGAGGAGTAAT+TGG - Chr7:51082771-51082790 MsG0780038679.01.T01:intron 45.0%
CCCAAGAACTGACTAATCCA+AGG - Chr7:51083140-51083159 MsG0780038679.01.T01:intron 45.0%
CTACCAAGCTTGGAAGAACA+AGG - Chr7:51082960-51082979 MsG0780038679.01.T01:intron 45.0%
CTTAGCTGTTCAGTAGTCAG+TGG + Chr7:51084708-51084727 None:intergenic 45.0%
GAAGGGAGGGGAAAAAAGAA+AGG + Chr7:51082734-51082753 None:intergenic 45.0%
GAATTCTCATGAAGCTCTCG+TGG - Chr7:51084399-51084418 MsG0780038679.01.T01:intron 45.0%
GACCATCCACATTATACGGA+AGG + Chr7:51084466-51084485 None:intergenic 45.0%
GAGTCCTTAGCAACACTCAA+TGG - Chr7:51085245-51085264 MsG0780038679.01.T01:CDS 45.0%
GCGTACAATACACCAAATGG+TGG - Chr7:51085108-51085127 MsG0780038679.01.T01:intron 45.0%
GTATAATGTGGATGGTCCTC+TGG - Chr7:51084469-51084488 MsG0780038679.01.T01:intron 45.0%
GTGAGAGAATCCTCCTTGAT+TGG - Chr7:51084841-51084860 MsG0780038679.01.T01:intron 45.0%
TCAAAATGTTGGGTCACGAG+GGG + Chr7:51082290-51082309 None:intergenic 45.0%
TCGGTACGTGGGAGTTATAA+GGG - Chr7:51082548-51082567 MsG0780038679.01.T01:intron 45.0%
TTCGGTACGTGGGAGTTATA+AGG - Chr7:51082547-51082566 MsG0780038679.01.T01:intron 45.0%
TTGTGATAAATTCCTCCCCC+TGG - Chr7:51082491-51082510 MsG0780038679.01.T01:intron 45.0%
! ACTCCTCTTACGGCTTGTTT+CGG + Chr7:51082768-51082787 None:intergenic 45.0%
! ATGGCCATTGAGTGTTGCTA+AGG + Chr7:51085252-51085271 None:intergenic 45.0%
! CACTGACTACTGAACAGCTA+AGG - Chr7:51084706-51084725 MsG0780038679.01.T01:intron 45.0%
! GTCTTCGAGTTACTTCTCTC+CGG + Chr7:51085217-51085236 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + Chr7:51085073-51085092 None:intergenic 45.0%
!! CCCTTGGATTAGTCAGTTCT+TGG + Chr7:51083144-51083163 None:intergenic 45.0%
!! CTATAATAAGGTGGTGGTGG+TGG + Chr7:51081615-51081634 None:intergenic 45.0%
!! TTAAAAATAGAAAATATATT+AGG + Chr7:51082626-51082645 None:intergenic 5.0%
AAAGTCACGGGTTCAAGTCC+TGG - Chr7:51085052-51085071 MsG0780038679.01.T01:intron 50.0%
ACCCCTTGTTCTTCCAAGCT+TGG + Chr7:51082966-51082985 None:intergenic 50.0%
ACTCCGAAACAAGCCGTAAG+AGG - Chr7:51082762-51082781 MsG0780038679.01.T01:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + Chr7:51085017-51085036 None:intergenic 50.0%
CAAGCTTGGTAGAACGTTGC+TGG + Chr7:51082952-51082971 None:intergenic 50.0%
CAGCAACGTTCTACCAAGCT+TGG - Chr7:51082950-51082969 MsG0780038679.01.T01:intron 50.0%
CCCAATGTGGATGGTCATCT+GGG - Chr7:51082262-51082281 MsG0780038679.01.T01:intron 50.0%
CCCAGATGACCATCCACATT+GGG + Chr7:51082265-51082284 None:intergenic 50.0%
GCTAAAAGTGAGAAGAGCCG+AGG + Chr7:51083407-51083426 None:intergenic 50.0%
GCTTGTTTCGGAGTTGGAAG+GGG + Chr7:51082756-51082775 None:intergenic 50.0%
GGAAAGAGCGGGACTAACAT+AGG - Chr7:51083510-51083529 MsG0780038679.01.T01:intron 50.0%
GTTCGTTCAATTGGCAGAGG+AGG + Chr7:51081681-51081700 None:intergenic 50.0%
TATCCTAAGGGGCCGAATGT+TGG - Chr7:51082996-51083015 MsG0780038679.01.T01:intron 50.0%
TCTTTCCTGAGGGGTAACCT+TGG - Chr7:51084997-51085016 MsG0780038679.01.T01:intron 50.0%
TTTCGGAGTTGGAAGGGGAA+GGG + Chr7:51082751-51082770 None:intergenic 50.0%
! CTTACGGCTTGTTTCGGAGT+TGG + Chr7:51082762-51082781 None:intergenic 50.0%
! GGCTTGTTTCGGAGTTGGAA+GGG + Chr7:51082757-51082776 None:intergenic 50.0%
! GGGTTTGTTTGGGAGAAGGA+AGG - Chr7:51082568-51082587 MsG0780038679.01.T01:intron 50.0%
! TTTGCGGGGTAGTTTTCCGA+AGG - Chr7:51082840-51082859 MsG0780038679.01.T01:intron 50.0%
!! GATAGAGCGCCGCAATAAAG+AGG - Chr7:51084128-51084147 MsG0780038679.01.T01:intron 50.0%
!! GGATTAGTCAGTTCTTGGGC+CGG + Chr7:51083139-51083158 None:intergenic 50.0%
!! TACATGGTGTTACGCTGCCT+CGG - Chr7:51083387-51083406 MsG0780038679.01.T01:intron 50.0%
ATGCAGAGTTGGGTCACGAG+GGG + Chr7:51084498-51084517 None:intergenic 55.0%
CATGCAGAGTTGGGTCACGA+GGG + Chr7:51084499-51084518 None:intergenic 55.0%
GCCCAATGTGGATGGTCATC+TGG - Chr7:51082261-51082280 MsG0780038679.01.T01:intron 55.0%
GCCCAGATGACCATCCACAT+TGG + Chr7:51082266-51082285 None:intergenic 55.0%
GTACCAACATTCGGCCCCTT+AGG + Chr7:51083002-51083021 None:intergenic 55.0%
GTGCGCCAGCTCTATCCTAA+GGG - Chr7:51082984-51083003 MsG0780038679.01.T01:intron 55.0%
GTTTCGGAGTTGGAAGGGGA+AGG + Chr7:51082752-51082771 None:intergenic 55.0%
TCAATTGGCAGAGGAGGCTC+TGG + Chr7:51081675-51081694 None:intergenic 55.0%
TCATGCAGAGTTGGGTCACG+AGG + Chr7:51084500-51084519 None:intergenic 55.0%
TGCGCCAGCTCTATCCTAAG+GGG - Chr7:51082985-51083004 MsG0780038679.01.T01:intron 55.0%
! CAAATGGTGGGACACCTTCC+CGG - Chr7:51085121-51085140 MsG0780038679.01.T01:intron 55.0%
! CGGCTTGTTTCGGAGTTGGA+AGG + Chr7:51082758-51082777 None:intergenic 55.0%
! TGATTGCTCTGGGCCCAATG+TGG - Chr7:51082249-51082268 MsG0780038679.01.T01:intron 55.0%
AGGGGTAACCTTGGCGCAAC+TGG - Chr7:51085006-51085025 MsG0780038679.01.T01:intron 60.0%
CTGAAGCTCCCGCATACGCA+AGG + Chr7:51085148-51085167 None:intergenic 60.0%
CTTCCCGGACCTTGCGTATG+CGG - Chr7:51085136-51085155 MsG0780038679.01.T01:CDS 60.0%
GAGTTGGAAGGGGAAGGGAG+GGG + Chr7:51082746-51082765 None:intergenic 60.0%
GGAGTTGGAAGGGGAAGGGA+GGG + Chr7:51082747-51082766 None:intergenic 60.0%
GGTGCGCCAGCTCTATCCTA+AGG - Chr7:51082983-51083002 MsG0780038679.01.T01:intron 60.0%
TCGGCCCCTTAGGATAGAGC+TGG + Chr7:51082992-51083011 None:intergenic 60.0%
TTCCCGGACCTTGCGTATGC+GGG - Chr7:51085137-51085156 MsG0780038679.01.T01:CDS 60.0%
TTGCGCCAAGGTTACCCCTC+AGG + Chr7:51085005-51085024 None:intergenic 60.0%
! TGCTCTGGGCCCAATGTGGA+TGG - Chr7:51082253-51082272 MsG0780038679.01.T01:intron 60.0%
!! CGGGAAGGTGTCCCACCATT+TGG + Chr7:51085123-51085142 None:intergenic 60.0%
CGCATACGCAAGGTCCGGGA+AGG + Chr7:51085138-51085157 None:intergenic 65.0%
CGGAGTTGGAAGGGGAAGGG+AGG + Chr7:51082748-51082767 None:intergenic 65.0%
CTCCCGCATACGCAAGGTCC+GGG + Chr7:51085142-51085161 None:intergenic 65.0%
GCTCCCGCATACGCAAGGTC+CGG + Chr7:51085143-51085162 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+TGG - Chr7:51085154-51085173 MsG0780038679.01.T01:CDS 65.0%
GGGTCACGAGGGGAACCCAG+AGG + Chr7:51084488-51084507 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 51081588 51085274 51081588 ID=MsG0780038679.01;Name=MsG0780038679.01
Chr7 mRNA 51081588 51085274 51081588 ID=MsG0780038679.01.T01;Parent=MsG0780038679.01;Name=MsG0780038679.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|0|0|3|0|126
Chr7 exon 51085134 51085274 51085134 ID=MsG0780038679.01.T01:exon:8034;Parent=MsG0780038679.01.T01
Chr7 exon 51083845 51083914 51083845 ID=MsG0780038679.01.T01:exon:8033;Parent=MsG0780038679.01.T01
Chr7 exon 51081588 51081757 51081588 ID=MsG0780038679.01.T01:exon:8032;Parent=MsG0780038679.01.T01
Chr7 CDS 51085134 51085274 51085134 ID=MsG0780038679.01.T01:cds;Parent=MsG0780038679.01.T01
Chr7 CDS 51083845 51083914 51083845 ID=MsG0780038679.01.T01:cds;Parent=MsG0780038679.01.T01
Chr7 CDS 51081588 51081757 51081588 ID=MsG0780038679.01.T01:cds;Parent=MsG0780038679.01.T01
Gene Sequence

>MsG0780038679.01.T01

TTTTGCTATGGCAACGCAACATACCCACCACCACCACCTTATTATAGACTTTACAAAGATTATTTGGAAGACTCTGAATCTTCTCCAGAGCCTCCTCTGCCAATTGAACGAACTTACATTTGTTTTGGTGGAAATTACACTACCAGCAACGTTCTACCAAGCTTGGAAGAACAAGGGGTGCGCCAGCTCTATCCTAAGGGGCCGAATGTTGGATGCGTACAATACACCAAATGGTGGGACACCTTCCCGGACCTTGCGTATGCGGGAGCTTCAGTGCACCTGGTATTGTCATTAGTCTTTCCTGACCTATCTTTACATTTCCGGAGAGAAGTAACTCGAAGACTTCTTAACGAGTCCTTAGCAACACTCAATGGCCATTAA
Protein sequence

>MsG0780038679.01.T01

FCYGNATYPPPPPYYRLYKDYLEDSESSPEPPLPIERTYICFGGNYTTSNVLPSLEEQGVRQLYPKGPNVGCVQYTKWWDTFPDLAYAGASVHLVLSLVFPDLSLHFRREVTRRLLNESLATLNGH*