AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039228.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039228.01.T01 MTR_7g068280 98.214 168 3 0 1 168 1 168 1.10e-112 317
MsG0780039228.01.T01 MTR_8g073345 56.923 130 48 3 16 145 9 130 3.37e-37 125
MsG0780039228.01.T01 MTR_3g115580 79.221 77 16 0 46 122 40 116 3.95e-36 123
MsG0780039228.01.T01 MTR_8g073345 56.349 126 47 3 16 141 9 126 6.75e-35 119
MsG0780039228.01.T01 MTR_5g024180 54.286 140 48 5 16 154 9 133 4.84e-32 112
MsG0780039228.01.T01 MTR_1g115220 50.000 114 53 2 47 157 98 210 5.71e-27 101
MsG0780039228.01.T01 MTR_7g082820 56.180 89 38 1 41 129 3 90 1.18e-25 96.3
MsG0780039228.01.T01 MTR_4g094622 48.315 89 46 0 38 126 51 139 8.78e-22 86.3
MsG0780039228.01.T01 MTR_5g024180 50.495 101 39 3 58 154 3 96 1.37e-17 74.3
MsG0780039228.01.T01 MTR_1g022345 43.820 89 48 2 47 134 554 641 3.24e-12 63.9
MsG0780039228.01.T01 MTR_8g099305 43.421 76 40 1 47 122 262 334 3.26e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039228.01.T01 AT3G51880 67.081 161 50 1 3 163 5 162 1.28e-63 194
MsG0780039228.01.T01 AT3G51880 70.548 146 40 1 3 148 5 147 4.19e-63 192
MsG0780039228.01.T01 AT3G51880 70.548 146 40 1 3 148 5 147 4.19e-63 192
MsG0780039228.01.T01 AT3G51880 70.548 146 40 1 3 148 5 147 4.19e-63 192
MsG0780039228.01.T01 AT3G51880 69.784 139 39 1 3 141 5 140 7.53e-59 181
MsG0780039228.01.T01 AT1G20693 63.866 119 37 1 42 160 29 141 2.65e-41 135
MsG0780039228.01.T01 AT1G20696 62.903 124 42 1 22 141 2 125 6.61e-40 132
MsG0780039228.01.T01 AT1G20693 68.000 100 32 0 42 141 29 128 2.81e-38 128
MsG0780039228.01.T01 AT1G20693 68.000 100 32 0 42 141 29 128 2.89e-38 128
MsG0780039228.01.T01 AT2G17560 60.000 115 42 2 42 155 26 137 9.68e-37 124
MsG0780039228.01.T01 AT2G17560 60.000 115 42 2 42 155 26 137 9.68e-37 124
MsG0780039228.01.T01 AT2G17560 62.162 111 38 2 42 151 26 133 1.08e-36 124
MsG0780039228.01.T01 AT1G20696 64.486 107 34 1 24 126 4 110 3.62e-35 120
MsG0780039228.01.T01 AT1G20696 66.667 102 30 1 25 122 5 106 4.28e-35 120
MsG0780039228.01.T01 AT1G20696 63.636 88 32 0 59 146 1 88 3.72e-29 103
MsG0780039228.01.T01 AT1G20696 63.855 83 30 0 59 141 1 83 6.08e-27 98.2
MsG0780039228.01.T01 AT4G35570 50.000 94 43 1 43 132 26 119 5.99e-26 96.3
MsG0780039228.01.T01 AT4G35570 50.000 94 43 1 43 132 26 119 5.99e-26 96.3
MsG0780039228.01.T01 AT2G34450 44.944 89 49 0 51 139 63 151 1.10e-21 86.3
MsG0780039228.01.T01 AT2G34450 44.944 89 49 0 51 139 63 151 1.10e-21 86.3
MsG0780039228.01.T01 AT2G34450 44.944 89 49 0 51 139 63 151 1.10e-21 86.3
MsG0780039228.01.T01 AT5G23420 54.651 86 38 1 31 116 95 179 3.26e-21 87.0
MsG0780039228.01.T01 AT2G34450 44.444 90 49 1 51 139 63 152 2.68e-20 82.8

Find 59 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCCTTCTTAGTCTT+TGG 0.199866 7:-60230753 None:intergenic
TGGTTTGTTGGGATCTTTCT+TGG 0.220642 7:-60230778 None:intergenic
TACTTTAGCCAACACATTTC+AGG 0.263377 7:-60232249 None:intergenic
GCTGATACGGCCTTCACATT+AGG 0.277113 7:-60230946 None:intergenic
TTTGCAGCCTTGGCTTCATA+TGG 0.316878 7:-60231379 None:intergenic
TTAGTCTTTGGCACCTTCTC+AGG 0.326317 7:-60230741 None:intergenic
CTGATACGGCCTTCACATTA+GGG 0.334691 7:-60230945 None:intergenic
CTTGAACTTCCCTCAGTTGT+TGG 0.336610 7:+60232193 MsG0780039228.01.T01:three_prime_UTR
CTTGAAATATAATGTTTCAT+TGG 0.346567 7:+60232069 MsG0780039228.01.T01:three_prime_UTR
GAATATTTATCTCTTATTGC+TGG 0.368858 7:+60232150 MsG0780039228.01.T01:three_prime_UTR
TTCTCTGCTTGCTGTGTCTT+CGG 0.377063 7:+60228541 None:intergenic
CGATTATAGGTTGGAAAGGC+TGG 0.389229 7:+60231051 MsG0780039228.01.T01:intron
ATGAAGCCAAGGCTGCAAAA+AGG 0.405842 7:+60231383 MsG0780039228.01.T01:CDS
TCTGTTGTTTACAGAAAAGT+AGG 0.425631 7:+60230696 MsG0780039228.01.T01:intron
CGTCCTCTTCCTCATCATCT+TGG 0.438258 7:-60231990 None:intergenic
TCGTCATCGTCCGCTGAACT+TGG 0.455762 7:-60231533 None:intergenic
GAAAGGCTGGAGGAGAGAAA+TGG 0.460200 7:+60231064 MsG0780039228.01.T01:CDS
GAAACTAACCGGTCATCAAC+TGG 0.469423 7:-60229378 None:intergenic
GAAATATAATGTTTCATTGG+TGG 0.492483 7:+60232072 MsG0780039228.01.T01:three_prime_UTR
ATATAATGTTTCATTGGTGG+AGG 0.501168 7:+60232075 MsG0780039228.01.T01:three_prime_UTR
GAAATGGAAATCCTTGACTA+AGG 0.502988 7:+60231080 MsG0780039228.01.T01:CDS
CAGAAAAGTAGGAAAGAGAA+AGG 0.505983 7:+60230707 MsG0780039228.01.T01:intron
CCTCTTCCTCATCATCTTGG+TGG 0.513999 7:-60231987 None:intergenic
AGAACGAAGACGATGACAAA+GGG 0.518815 7:+60229318 MsG0780039228.01.T01:exon
CTGAGGGAAGTTCAAGTGGC+TGG 0.523259 7:-60232186 None:intergenic
ATGTAAACTTACAGCTGATA+CGG 0.526858 7:-60230959 None:intergenic
AAAGACTAAGAAGGAGAAGA+AGG 0.533667 7:+60230755 MsG0780039228.01.T01:CDS
AATGTTTCATTGGTGGAGGG+AGG 0.535007 7:+60232079 MsG0780039228.01.T01:three_prime_UTR
CAGGAAGACGAAGAAAGCGC+TGG 0.539312 7:-60230811 None:intergenic
CCACCAAGATGATGAGGAAG+AGG 0.540543 7:+60231987 MsG0780039228.01.T01:CDS
GGATTTCAGAAAGACTTTCA+AGG 0.542513 7:+60230915 MsG0780039228.01.T01:CDS
GAAGGTGCCAAAGACTAAGA+AGG 0.548134 7:+60230746 MsG0780039228.01.T01:CDS
AATAATGAAGATGAAGCAAG+TGG 0.555668 7:+60231587 MsG0780039228.01.T01:CDS
GGCTGCTGCTAAACCTGAGA+AGG 0.556201 7:+60230728 MsG0780039228.01.T01:CDS
TGAAGATGAAGCAAGTGGAG+AGG 0.558529 7:+60231592 MsG0780039228.01.T01:CDS
ATGGATGAAGGGTTGAAGAG+AGG 0.560174 7:-60228589 None:intergenic
GCATTGTGCCTGAAATGTGT+TGG 0.591610 7:+60232241 MsG0780039228.01.T01:three_prime_UTR
GGCAGAGAACCCTAATGTGA+AGG 0.592629 7:+60230936 MsG0780039228.01.T01:CDS
ACTTCGATTATAGGTTGGAA+AGG 0.593749 7:+60231047 MsG0780039228.01.T01:intron
GAAGACGATGACAAAGGGCA+AGG 0.595311 7:+60229323 MsG0780039228.01.T01:exon
AAAAGCTCCATATGAAGCCA+AGG 0.600500 7:+60231372 MsG0780039228.01.T01:CDS
TATAATGTTTCATTGGTGGA+GGG 0.601363 7:+60232076 MsG0780039228.01.T01:three_prime_UTR
TTCAGCGGACGATGACGAGG+AGG 0.606822 7:+60231538 MsG0780039228.01.T01:CDS
AAGACGATGACAAAGGGCAA+GGG 0.619855 7:+60229324 MsG0780039228.01.T01:exon
AAGTTCAGCGGACGATGACG+AGG 0.620749 7:+60231535 MsG0780039228.01.T01:CDS
ACAACTGAGGGAAGTTCAAG+TGG 0.622358 7:-60232190 None:intergenic
ATTGCTTACAGCCTTAGTCA+AGG 0.624911 7:-60231091 None:intergenic
AGGAAGACGAAGAAAGCGCT+GGG 0.627394 7:-60230810 None:intergenic
GGATGACCACCAAGATGATG+AGG 0.630902 7:+60231981 MsG0780039228.01.T01:intron
ATGTTGACAGCCAAGTTCAG+CGG 0.635286 7:+60231523 MsG0780039228.01.T01:intron
GTACAATAACCAACAACTGA+GGG 0.647202 7:-60232202 None:intergenic
TAGAACGAAGACGATGACAA+AGG 0.648840 7:+60229317 MsG0780039228.01.T01:exon
AGTACAATAACCAACAACTG+AGG 0.654621 7:-60232203 None:intergenic
TATGAATGCTTATAATAACA+AGG 0.656932 7:+60231426 MsG0780039228.01.T01:CDS
TTATAGGTTGGAAAGGCTGG+AGG 0.672201 7:+60231054 MsG0780039228.01.T01:intron
TGACGAGGAGGAATCAGACA+AGG 0.693157 7:+60231550 MsG0780039228.01.T01:CDS
ATTTCAGGCACAATGCACAA+AGG 0.699622 7:-60232234 None:intergenic
TGATGAGGAAGAGGACGACG+AGG 0.702863 7:+60231996 MsG0780039228.01.T01:CDS
AAGACGAAGAAAGCGCTGGG+AGG 0.712358 7:-60230807 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATCATTAATCATAAAA+GGG - Chr7:60228966-60228985 None:intergenic 10.0%
!! TAATAATCATTAATCATAAA+AGG - Chr7:60228967-60228986 None:intergenic 10.0%
!!! TTATTTTAAAGAAAAATATG+CGG - Chr7:60231893-60231912 None:intergenic 10.0%
!! ATAAGTTAGTAGTATTAATT+AGG + Chr7:60230213-60230232 MsG0780039228.01.T01:intron 15.0%
!! ATAATCATTAATCATAAAAG+GGG - Chr7:60228965-60228984 None:intergenic 15.0%
!! CCTAATTTATTCTTAAAAAT+TGG - Chr7:60231765-60231784 None:intergenic 15.0%
!! GAAATTAGAAATAAGAAAAA+AGG - Chr7:60229967-60229986 None:intergenic 15.0%
!! TAAGTTAGTAGTATTAATTA+GGG + Chr7:60230214-60230233 MsG0780039228.01.T01:intron 15.0%
!! TATATATCTATCTATTAAAG+AGG - Chr7:60229612-60229631 None:intergenic 15.0%
!!! ATAGTTTTCTATTTATTCTA+AGG + Chr7:60230588-60230607 MsG0780039228.01.T01:intron 15.0%
!!! CCAATTTTTAAGAATAAATT+AGG + Chr7:60231762-60231781 MsG0780039228.01.T01:intron 15.0%
!!! TTAAGGTTTATGTTTTTTTT+AGG + Chr7:60228695-60228714 MsG0780039228.01.T01:intron 15.0%
!!! TTTTTATTCAAAAAATGTTC+TGG + Chr7:60229778-60229797 MsG0780039228.01.T01:intron 15.0%
!!! TTTTTATTCTAAAAATGTTC+TGG + Chr7:60230480-60230499 MsG0780039228.01.T01:intron 15.0%
!! AAGTTAGTAGTATTAATTAG+GGG + Chr7:60230215-60230234 MsG0780039228.01.T01:intron 20.0%
!! ATACAATAGAAATACGAAAA+AGG - Chr7:60229759-60229778 None:intergenic 20.0%
!! CAACTGTTACAAATATTAAT+TGG - Chr7:60230562-60230581 None:intergenic 20.0%
!! CTTGAAATATAATGTTTCAT+TGG + Chr7:60232069-60232088 MsG0780039228.01.T01:three_prime_UTR 20.0%
!! GGACAAAAATAAAATCAAAT+GGG + Chr7:60230297-60230316 MsG0780039228.01.T01:intron 20.0%
!! TACTTTGATATTATGTGATA+TGG + Chr7:60228985-60229004 MsG0780039228.01.T01:intron 20.0%
!! TAGAAATACGAAGAAAAAAA+AGG - Chr7:60230448-60230467 None:intergenic 20.0%
!! TATGAATGCTTATAATAACA+AGG + Chr7:60231426-60231445 MsG0780039228.01.T01:CDS 20.0%
!! TGATTATAGATACTTTATAG+CGG + Chr7:60229530-60229549 MsG0780039228.01.T01:intron 20.0%
!! TTAATACTACTAACTTATCT+TGG - Chr7:60230211-60230230 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG - Chr7:60230172-60230191 None:intergenic 20.0%
!!! AGGTTTGTGTTTTTATTTTA+AGG + Chr7:60228802-60228821 MsG0780039228.01.T01:intron 20.0%
!!! CTTTCTTATTTTGAATGTAA+AGG + Chr7:60231348-60231367 MsG0780039228.01.T01:intron 20.0%
!!! TTCTTTGTTTTTTGTGTTTA+AGG + Chr7:60228678-60228697 MsG0780039228.01.T01:intron 20.0%
!!! TTTGTTTTGTTTTGTGTTTA+AGG + Chr7:60228782-60228801 MsG0780039228.01.T01:intron 20.0%
! AAAAAGGGTTACCTTAAAAA+TGG - Chr7:60228611-60228630 None:intergenic 25.0%
! AAACAACAAAACTAGAAACA+CGG - Chr7:60231462-60231481 None:intergenic 25.0%
! AAATCCTCACTATATAAGAA+TGG - Chr7:60230901-60230920 None:intergenic 25.0%
! AAGAAATGTGAAAAATGCAA+AGG - Chr7:60230090-60230109 None:intergenic 25.0%
! AATGCATCTAGTAATTTGAA+AGG + Chr7:60230260-60230279 MsG0780039228.01.T01:intron 25.0%
! AATTTGTGTACTTCGATTAT+AGG + Chr7:60231038-60231057 MsG0780039228.01.T01:intron 25.0%
! AGAAATGTGAAAAATGCAAA+GGG - Chr7:60230089-60230108 None:intergenic 25.0%
! ATACACATTTATTACTCTCT+AGG - Chr7:60229844-60229863 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+GGG + Chr7:60230261-60230280 MsG0780039228.01.T01:intron 25.0%
! ATGTGATATGGAAAAATTGA+AGG + Chr7:60228997-60229016 MsG0780039228.01.T01:intron 25.0%
! CAAAAATAAAATCAAATGGG+TGG + Chr7:60230300-60230319 MsG0780039228.01.T01:intron 25.0%
! GAAATATAATGTTTCATTGG+TGG + Chr7:60232072-60232091 MsG0780039228.01.T01:three_prime_UTR 25.0%
! GAATATTTATCTCTTATTGC+TGG + Chr7:60232150-60232169 MsG0780039228.01.T01:three_prime_UTR 25.0%
! GGATTTATTCTGTTGAATAA+TGG + Chr7:60231297-60231316 MsG0780039228.01.T01:intron 25.0%
! GGGACAAAAATAAAATCAAA+TGG + Chr7:60230296-60230315 MsG0780039228.01.T01:intron 25.0%
! TATGAAAACAAACCTTCATT+TGG + Chr7:60231920-60231939 MsG0780039228.01.T01:intron 25.0%
! TGTGATATGGAAAAATTGAA+GGG + Chr7:60228998-60229017 MsG0780039228.01.T01:intron 25.0%
! TGTTAACTGATATCGTAATA+TGG + Chr7:60229417-60229436 MsG0780039228.01.T01:intron 25.0%
! TTACCTTAAAAATGGATGAA+GGG - Chr7:60228603-60228622 None:intergenic 25.0%
!! AACGTGTCATCTAAATTTTT+GGG - Chr7:60231840-60231859 None:intergenic 25.0%
!! ATGAATTATGCTTGTTACTT+GGG + Chr7:60229053-60229072 MsG0780039228.01.T01:intron 25.0%
!! ATTAATTAGGGGTATGTTTA+GGG + Chr7:60230226-60230245 MsG0780039228.01.T01:intron 25.0%
!! GAGCTTGAATAATTTTATAG+CGG - Chr7:60230624-60230643 None:intergenic 25.0%
!! TATGAATTATGCTTGTTACT+TGG + Chr7:60229052-60229071 MsG0780039228.01.T01:intron 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + Chr7:60230225-60230244 MsG0780039228.01.T01:intron 25.0%
!! TTAAAGAGGAAAAACTTTTG+CGG - Chr7:60229598-60229617 None:intergenic 25.0%
!!! ATGAAGTTTTTAAGTTGTCA+AGG + Chr7:60228859-60228878 MsG0780039228.01.T01:intron 25.0%
!!! ATTGATAGCACTTTTATACA+TGG - Chr7:60229507-60229526 None:intergenic 25.0%
!!! CTATTTATTCTAAGGTTCTT+TGG + Chr7:60230596-60230615 MsG0780039228.01.T01:intron 25.0%
!!! TAAGCTTGTGAAATTGATTT+TGG + Chr7:60229250-60229269 MsG0780039228.01.T01:intron 25.0%
!!! TCTAAATTTTTGGGAAGATA+AGG - Chr7:60231831-60231850 None:intergenic 25.0%
!!! TGAAGTTTTTAAGTTGTCAA+GGG + Chr7:60228860-60228879 MsG0780039228.01.T01:intron 25.0%
!!! TGTTTTAAAAATCCTTTGCT+TGG - Chr7:60229914-60229933 None:intergenic 25.0%
!!! TTCTTAAAAATTGGCTTGTA+AGG - Chr7:60231756-60231775 None:intergenic 25.0%
AAATGTGAAAAATGCAAAGG+GGG - Chr7:60230087-60230106 None:intergenic 30.0%
AACAACAAAACTAGAAACAC+GGG - Chr7:60231461-60231480 None:intergenic 30.0%
AATAATGAAGATGAAGCAAG+TGG + Chr7:60231587-60231606 MsG0780039228.01.T01:CDS 30.0%
ACAAATATTAATTGGTGCAG+TGG - Chr7:60230554-60230573 None:intergenic 30.0%
ACACAGATATGTTAATACAG+TGG - Chr7:60231251-60231270 None:intergenic 30.0%
ATATAATGTTTCATTGGTGG+AGG + Chr7:60232075-60232094 MsG0780039228.01.T01:three_prime_UTR 30.0%
ATGATGTTTGATGAGTTATG+AGG + Chr7:60228734-60228753 MsG0780039228.01.T01:intron 30.0%
ATGTAAACTTACAGCTGATA+CGG - Chr7:60230962-60230981 None:intergenic 30.0%
CAGAGGAAAAAAGAGAAAAA+GGG - Chr7:60228626-60228645 None:intergenic 30.0%
CATACAAACAAAGGACAATT+TGG - Chr7:60230163-60230182 None:intergenic 30.0%
CTAACTGTCCAAAAGAATAT+TGG - Chr7:60229566-60229585 None:intergenic 30.0%
GAAATGTGAAAAATGCAAAG+GGG - Chr7:60230088-60230107 None:intergenic 30.0%
GACATCATTATACTGAAAAG+AGG + Chr7:60231276-60231295 MsG0780039228.01.T01:intron 30.0%
GTTACCTTAAAAATGGATGA+AGG - Chr7:60228604-60228623 None:intergenic 30.0%
TAAGTCAGACAACTTGAAAA+AGG - Chr7:60230874-60230893 None:intergenic 30.0%
TATAATGTTTCATTGGTGGA+GGG + Chr7:60232076-60232095 MsG0780039228.01.T01:three_prime_UTR 30.0%
TGCATCTAGTAATTTGAAAG+GGG + Chr7:60230262-60230281 MsG0780039228.01.T01:intron 30.0%
TGTTCCATTCTTATATAGTG+AGG + Chr7:60230894-60230913 MsG0780039228.01.T01:intron 30.0%
TTGCTCAAATATTACTCTCT+AGG - Chr7:60230525-60230544 None:intergenic 30.0%
TTGGTCAAATATCTGAATTG+AGG + Chr7:60228899-60228918 MsG0780039228.01.T01:intron 30.0%
TTTAAATCACAGTCATGGTT+TGG + Chr7:60229077-60229096 MsG0780039228.01.T01:intron 30.0%
! ACACATTTTATGCCAAATGA+AGG - Chr7:60231935-60231954 None:intergenic 30.0%
! GAACGTGTCATCTAAATTTT+TGG - Chr7:60231841-60231860 None:intergenic 30.0%
! TCTGTTGTTTACAGAAAAGT+AGG + Chr7:60230696-60230715 MsG0780039228.01.T01:intron 30.0%
! TTGTCCATCAAACTCTAAAA+GGG + Chr7:60231721-60231740 MsG0780039228.01.T01:intron 30.0%
!! AAATAAGAAAAAAGGTGCCT+CGG - Chr7:60229959-60229978 None:intergenic 30.0%
!! TTTCATTTTGATCGATGCTT+TGG + Chr7:60232279-60232298 MsG0780039228.01.T01:three_prime_UTR 30.0%
!!! TGTTTTAAAAAACCTTCGCT+TGG - Chr7:60230395-60230414 None:intergenic 30.0%
AAAGACTAAGAAGGAGAAGA+AGG + Chr7:60230755-60230774 MsG0780039228.01.T01:CDS 35.0%
AAATATTACTCTCTAGGCGA+GGG - Chr7:60230519-60230538 None:intergenic 35.0%
AATGTGAAAAATGCAAAGGG+GGG - Chr7:60230086-60230105 None:intergenic 35.0%
ACACGTTCCAAAGTTTAAAG+GGG + Chr7:60231853-60231872 MsG0780039228.01.T01:intron 35.0%
AGTACAATAACCAACAACTG+AGG - Chr7:60232206-60232225 None:intergenic 35.0%
ATTTATTACTCTCTAGGCGA+AGG - Chr7:60230032-60230051 None:intergenic 35.0%
CAAAAGAGATATTGAAGCAG+AGG - Chr7:60228643-60228662 None:intergenic 35.0%
CAAATGGGTGGTTACATTAA+GGG + Chr7:60230312-60230331 MsG0780039228.01.T01:intron 35.0%
CAGAAAAGTAGGAAAGAGAA+AGG + Chr7:60230707-60230726 MsG0780039228.01.T01:intron 35.0%
CATCTAGTAATTTGAAAGGG+GGG + Chr7:60230264-60230283 MsG0780039228.01.T01:intron 35.0%
CCATAATACAACTGTCATTG+AGG - Chr7:60229140-60229159 None:intergenic 35.0%
CCTCAATGACAGTTGTATTA+TGG + Chr7:60229137-60229156 MsG0780039228.01.T01:intron 35.0%
CTCCAAGACGAAAAAAACTT+TGG + Chr7:60229161-60229180 MsG0780039228.01.T01:intron 35.0%
GAAATGGAAATCCTTGACTA+AGG + Chr7:60231080-60231099 MsG0780039228.01.T01:CDS 35.0%
GACACGTTCCAAAGTTTAAA+GGG + Chr7:60231852-60231871 MsG0780039228.01.T01:intron 35.0%
GCAGAGGAAAAAAGAGAAAA+AGG - Chr7:60228627-60228646 None:intergenic 35.0%
GCATCTAGTAATTTGAAAGG+GGG + Chr7:60230263-60230282 MsG0780039228.01.T01:intron 35.0%
GCGATGATATAGAAACTAAC+CGG - Chr7:60229392-60229411 None:intergenic 35.0%
GGATTTCAGAAAGACTTTCA+AGG + Chr7:60230915-60230934 MsG0780039228.01.T01:CDS 35.0%
GTACAATAACCAACAACTGA+GGG - Chr7:60232205-60232224 None:intergenic 35.0%
GTTGTCCATCAAACTCTAAA+AGG + Chr7:60231720-60231739 MsG0780039228.01.T01:intron 35.0%
TACTTTAGCCAACACATTTC+AGG - Chr7:60232252-60232271 None:intergenic 35.0%
TATGAAGAATGAACCGTCTT+AGG - Chr7:60231800-60231819 None:intergenic 35.0%
TCAAATGGGTGGTTACATTA+AGG + Chr7:60230311-60230330 MsG0780039228.01.T01:intron 35.0%
TGACACGTTCCAAAGTTTAA+AGG + Chr7:60231851-60231870 MsG0780039228.01.T01:intron 35.0%
TGTGTACTTCGATTATAGGT+TGG + Chr7:60231042-60231061 MsG0780039228.01.T01:intron 35.0%
TTGTATGCCCCTTTAAACTT+TGG - Chr7:60231863-60231882 None:intergenic 35.0%
TTGTATGTCATTGTCCGAAA+AGG + Chr7:60229463-60229482 MsG0780039228.01.T01:intron 35.0%
! ACTTCGATTATAGGTTGGAA+AGG + Chr7:60231047-60231066 MsG0780039228.01.T01:intron 35.0%
! CTCTGCTTCAATATCTCTTT+TGG + Chr7:60228641-60228660 MsG0780039228.01.T01:intron 35.0%
! GTAAATCACCAACACCTTTT+CGG - Chr7:60229480-60229499 None:intergenic 35.0%
! TTCTTCTCCTTCTTAGTCTT+TGG - Chr7:60230756-60230775 None:intergenic 35.0%
!! CAACCCTTCATCCATTTTTA+AGG + Chr7:60228597-60228616 MsG0780039228.01.T01:five_prime_UTR 35.0%
!! GCTTGTGAAATTGATTTTGG+TGG + Chr7:60229253-60229272 MsG0780039228.01.T01:intron 35.0%
!! TTTTCTAGTAGAGCAACTCT+TGG + Chr7:60232112-60232131 MsG0780039228.01.T01:three_prime_UTR 35.0%
!!! CACCAAAGTTTTTTTCGTCT+TGG - Chr7:60229166-60229185 None:intergenic 35.0%
!!! CGAAGGTTTTTTAAAACACG+AGG + Chr7:60230397-60230416 MsG0780039228.01.T01:intron 35.0%
!!! GTGATCACTGACTTTTTTGT+TGG + Chr7:60229200-60229219 MsG0780039228.01.T01:intron 35.0%
!!! TGGGTTTTAAATCACAGTCA+TGG + Chr7:60229072-60229091 MsG0780039228.01.T01:intron 35.0%
!!! TTTTGAAACCAGTTGATGAC+CGG + Chr7:60229370-60229389 MsG0780039228.01.T01:CDS 35.0%
AAAAGCTCCATATGAAGCCA+AGG + Chr7:60231372-60231391 MsG0780039228.01.T01:CDS 40.0%
AATATTACTCTCTAGGCGAG+GGG - Chr7:60230518-60230537 None:intergenic 40.0%
ACAACTATAACACCGTTGTG+GGG - Chr7:60231705-60231724 None:intergenic 40.0%
AGAACGAAGACGATGACAAA+GGG + Chr7:60229318-60229337 MsG0780039228.01.T01:exon 40.0%
AGGGAACAGCAAAAACTTCA+AGG + Chr7:60229343-60229362 MsG0780039228.01.T01:CDS 40.0%
ATTGCTTACAGCCTTAGTCA+AGG - Chr7:60231094-60231113 None:intergenic 40.0%
ATTTCAGGCACAATGCACAA+AGG - Chr7:60232237-60232256 None:intergenic 40.0%
CAAATATTACTCTCTAGGCG+AGG - Chr7:60230520-60230539 None:intergenic 40.0%
GACAACTATAACACCGTTGT+GGG - Chr7:60231706-60231725 None:intergenic 40.0%
GCTCAGTTCAAAACCTAAGA+CGG + Chr7:60231784-60231803 MsG0780039228.01.T01:intron 40.0%
GGGAAAAGATGCTGAATTGT+TGG + Chr7:60228880-60228899 MsG0780039228.01.T01:intron 40.0%
GGGAACAGCAAAAACTTCAA+GGG + Chr7:60229344-60229363 MsG0780039228.01.T01:CDS 40.0%
TAAAACACGAGGTTGTGAGT+TGG + Chr7:60229719-60229738 MsG0780039228.01.T01:intron 40.0%
TAGAACGAAGACGATGACAA+AGG + Chr7:60229317-60229336 MsG0780039228.01.T01:exon 40.0%
TCTAGTACCAAGACGATCTA+CGG - Chr7:60229301-60229320 None:intergenic 40.0%
TGAAAGGGGGGTTACATTTA+GGG + Chr7:60230276-60230295 MsG0780039228.01.T01:intron 40.0%
TGACAGACAGAGATACTAAC+AGG - Chr7:60230833-60230852 None:intergenic 40.0%
TTGAAAGGGGGGTTACATTT+AGG + Chr7:60230275-60230294 MsG0780039228.01.T01:intron 40.0%
! AACTTTCCTTTTTGCAGCCT+TGG - Chr7:60231392-60231411 None:intergenic 40.0%
! GTCAGAGGCCAATATTCTTT+TGG + Chr7:60229555-60229574 MsG0780039228.01.T01:intron 40.0%
! TACTTTATAGCGGAAGTCAG+AGG + Chr7:60229540-60229559 MsG0780039228.01.T01:intron 40.0%
! TTCTTTTGGACAGTTAGCTG+TGG + Chr7:60229569-60229588 MsG0780039228.01.T01:intron 40.0%
! TTTTCAACCGTAGATCGTCT+TGG + Chr7:60229291-60229310 MsG0780039228.01.T01:intron 40.0%
!! AAATTGGCTTGTAAGGTGAG+CGG - Chr7:60231749-60231768 None:intergenic 40.0%
!! CGAAGAAAAAAAAGGTGCCT+CGG - Chr7:60230440-60230459 None:intergenic 40.0%
!! GAAATACGAAAAAGGTGCCA+CGG - Chr7:60229751-60229770 None:intergenic 40.0%
!! TGGTTTGTTGGGATCTTTCT+TGG - Chr7:60230781-60230800 None:intergenic 40.0%
!!! GACTTTTTTGTTGGAAACCC+TGG + Chr7:60229209-60229228 MsG0780039228.01.T01:intron 40.0%
!!! GCAAAGGCTTTTAAAACACG+AGG + Chr7:60229708-60229727 MsG0780039228.01.T01:intron 40.0%
!!! GGAGGTCTTTTTGGTTTGTT+GGG - Chr7:60230792-60230811 None:intergenic 40.0%
!!! GGTACCCTTTTAGAGTTTGA+TGG - Chr7:60231728-60231747 None:intergenic 40.0%
AAGACGATGACAAAGGGCAA+GGG + Chr7:60229324-60229343 MsG0780039228.01.T01:exon 45.0%
AATGTTTCATTGGTGGAGGG+AGG + Chr7:60232079-60232098 MsG0780039228.01.T01:three_prime_UTR 45.0%
AATTATTCAAGCTCCGCCAC+CGG + Chr7:60230630-60230649 MsG0780039228.01.T01:intron 45.0%
ACAACTGAGGGAAGTTCAAG+TGG - Chr7:60232193-60232212 None:intergenic 45.0%
ATGAAGCCAAGGCTGCAAAA+AGG + Chr7:60231383-60231402 MsG0780039228.01.T01:CDS 45.0%
ATGGATGAAGGGTTGAAGAG+AGG - Chr7:60228592-60228611 None:intergenic 45.0%
ATGTTGACAGCCAAGTTCAG+CGG + Chr7:60231523-60231542 MsG0780039228.01.T01:intron 45.0%
CTGATACGGCCTTCACATTA+GGG - Chr7:60230948-60230967 None:intergenic 45.0%
CTTGAACTTCCCTCAGTTGT+TGG + Chr7:60232193-60232212 MsG0780039228.01.T01:three_prime_UTR 45.0%
GAAACTAACCGGTCATCAAC+TGG - Chr7:60229381-60229400 None:intergenic 45.0%
GCAAAGGGGGGTTACATTAA+GGG - Chr7:60230074-60230093 None:intergenic 45.0%
GCATTGTGCCTGAAATGTGT+TGG + Chr7:60232241-60232260 MsG0780039228.01.T01:three_prime_UTR 45.0%
GGACAACTATAACACCGTTG+TGG - Chr7:60231707-60231726 None:intergenic 45.0%
TAACGATTGCTACCCCACAA+CGG + Chr7:60231690-60231709 MsG0780039228.01.T01:intron 45.0%
TCCTGTAATACGACTTCCAC+CGG - Chr7:60230652-60230671 None:intergenic 45.0%
TCCTGTACAACAAGGAGAGA+TGG - Chr7:60231964-60231983 None:intergenic 45.0%
TCTGGTCAAGATCTGAAGAC+TGG + Chr7:60229796-60229815 MsG0780039228.01.T01:intron 45.0%
TGAAGATGAAGCAAGTGGAG+AGG + Chr7:60231592-60231611 MsG0780039228.01.T01:CDS 45.0%
TGCAAAGGGGGGTTACATTA+AGG - Chr7:60230075-60230094 None:intergenic 45.0%
TGGGTGGTTACATTAAGGGA+CGG + Chr7:60230316-60230335 MsG0780039228.01.T01:intron 45.0%
TGGTTACATTAAGGGACGGA+GGG + Chr7:60230320-60230339 MsG0780039228.01.T01:intron 45.0%
TTTGCAGCCTTGGCTTCATA+TGG - Chr7:60231382-60231401 None:intergenic 45.0%
! ACCATCTCTCCTTGTTGTAC+AGG + Chr7:60231960-60231979 MsG0780039228.01.T01:intron 45.0%
! AGTGTTTTGTAGTCACAGCC+AGG - Chr7:60229230-60229249 None:intergenic 45.0%
! CGATTATAGGTTGGAAAGGC+TGG + Chr7:60231051-60231070 MsG0780039228.01.T01:intron 45.0%
! GTCATTGTCCGAAAAGGTGT+TGG + Chr7:60229469-60229488 MsG0780039228.01.T01:intron 45.0%
! GTGTTTTGTAGTCACAGCCA+GGG - Chr7:60229229-60229248 None:intergenic 45.0%
! TTAGTCTTTGGCACCTTCTC+AGG - Chr7:60230744-60230763 None:intergenic 45.0%
! TTATAGGTTGGAAAGGCTGG+AGG + Chr7:60231054-60231073 MsG0780039228.01.T01:intron 45.0%
!! GAAGGTGCCAAAGACTAAGA+AGG + Chr7:60230746-60230765 MsG0780039228.01.T01:CDS 45.0%
!! TAAGAAAAAAGGTGCCTCGG+TGG - Chr7:60229956-60229975 None:intergenic 45.0%
!!! GGGAGGTCTTTTTGGTTTGT+TGG - Chr7:60230793-60230812 None:intergenic 45.0%
ACCGGTGGAAGTCGTATTAC+AGG + Chr7:60230648-60230667 MsG0780039228.01.T01:intron 50.0%
AGGGGGGTTACATTAAGGGA+CGG - Chr7:60230070-60230089 None:intergenic 50.0%
ATCCTTTGCTTGGCACTACG+CGG - Chr7:60229904-60229923 None:intergenic 50.0%
CCACCAAGATGATGAGGAAG+AGG + Chr7:60231987-60232006 MsG0780039228.01.T01:CDS 50.0%
CCTCTTCCTCATCATCTTGG+TGG - Chr7:60231990-60232009 None:intergenic 50.0%
CGTCCTCTTCCTCATCATCT+TGG - Chr7:60231993-60232012 None:intergenic 50.0%
GAAAGGCTGGAGGAGAGAAA+TGG + Chr7:60231064-60231083 MsG0780039228.01.T01:CDS 50.0%
GAAGACGATGACAAAGGGCA+AGG + Chr7:60229323-60229342 MsG0780039228.01.T01:exon 50.0%
GCTGATACGGCCTTCACATT+AGG - Chr7:60230949-60230968 None:intergenic 50.0%
GGATGACCACCAAGATGATG+AGG + Chr7:60231981-60232000 MsG0780039228.01.T01:intron 50.0%
GGCAGAGAACCCTAATGTGA+AGG + Chr7:60230936-60230955 MsG0780039228.01.T01:CDS 50.0%
GGGTTACATTAAGGGACGGA+GGG - Chr7:60230066-60230085 None:intergenic 50.0%
GGTGGTCATCCTGTACAACA+AGG - Chr7:60231972-60231991 None:intergenic 50.0%
GTGGTTACATTAAGGGACGG+AGG + Chr7:60230319-60230338 MsG0780039228.01.T01:intron 50.0%
TGACGAGGAGGAATCAGACA+AGG + Chr7:60231550-60231569 MsG0780039228.01.T01:CDS 50.0%
TGTAATACGACTTCCACCGG+TGG - Chr7:60230649-60230668 None:intergenic 50.0%
!! AGGAAGACGAAGAAAGCGCT+GGG - Chr7:60230813-60230832 None:intergenic 50.0%
!! ATACGAAAAAGGTGCCACGG+TGG - Chr7:60229748-60229767 None:intergenic 50.0%
!!! AAAGCGCTGGGAGGTCTTTT+TGG - Chr7:60230801-60230820 None:intergenic 50.0%
AACCTTCGCTTGGCACTACG+CGG - Chr7:60230385-60230404 None:intergenic 55.0%
AAGTTCAGCGGACGATGACG+AGG + Chr7:60231535-60231554 MsG0780039228.01.T01:CDS 55.0%
AATACGACTTCCACCGGTGG+CGG - Chr7:60230646-60230665 None:intergenic 55.0%
AGCCACGTAGCGACAAGCAA+AGG + Chr7:60229692-60229711 MsG0780039228.01.T01:intron 55.0%
AGCCTTTGCTTGTCGCTACG+TGG - Chr7:60229697-60229716 None:intergenic 55.0%
CTGAGGGAAGTTCAAGTGGC+TGG - Chr7:60232189-60232208 None:intergenic 55.0%
GAACCGAAGACACAGCAAGC+AGG - Chr7:60228547-60228566 None:intergenic 55.0%
GGCTGCTGCTAAACCTGAGA+AGG + Chr7:60230728-60230747 MsG0780039228.01.T01:CDS 55.0%
GGGGTTACATTAAGGGACGG+AGG - Chr7:60230067-60230086 None:intergenic 55.0%
TCGTCATCGTCCGCTGAACT+TGG - Chr7:60231536-60231555 None:intergenic 55.0%
TGATGAGGAAGAGGACGACG+AGG + Chr7:60231996-60232015 MsG0780039228.01.T01:CDS 55.0%
TTCTGAGTTCGAGTCTGCCG+AGG + Chr7:60230420-60230439 MsG0780039228.01.T01:intron 55.0%
TTGTGAGTTCGAGTCCACCG+AGG + Chr7:60229939-60229958 MsG0780039228.01.T01:intron 55.0%
! CAGGAAGACGAAGAAAGCGC+TGG - Chr7:60230814-60230833 None:intergenic 55.0%
! TTGTGAGTTGGAGTCCACCG+TGG + Chr7:60229731-60229750 MsG0780039228.01.T01:intron 55.0%
!! AAGACGAAGAAAGCGCTGGG+AGG - Chr7:60230810-60230829 None:intergenic 55.0%
AGCCGCGTAGTGCCAAGCAA+AGG + Chr7:60229899-60229918 MsG0780039228.01.T01:intron 60.0%
TATTCAAGCTCCGCCACCGG+TGG + Chr7:60230633-60230652 MsG0780039228.01.T01:intron 60.0%
TTCAGCGGACGATGACGAGG+AGG + Chr7:60231538-60231557 MsG0780039228.01.T01:CDS 60.0%
AGCCGCGTAGTGCCAAGCGA+AGG + Chr7:60230380-60230399 MsG0780039228.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 60228545 60232309 60228545 ID=MsG0780039228.01;Name=MsG0780039228.01
Chr7 mRNA 60228545 60232309 60228545 ID=MsG0780039228.01.T01;Parent=MsG0780039228.01;Name=MsG0780039228.01.T01;_AED=0.39;_eAED=0.39;_QI=100|1|1|1|0.85|0.75|8|256|172
Chr7 exon 60228545 60228618 60228545 ID=MsG0780039228.01.T01:exon:16136;Parent=MsG0780039228.01.T01
Chr7 exon 60229304 60229391 60229304 ID=MsG0780039228.01.T01:exon:16137;Parent=MsG0780039228.01.T01
Chr7 exon 60230710 60230832 60230710 ID=MsG0780039228.01.T01:exon:16138;Parent=MsG0780039228.01.T01
Chr7 exon 60230912 60230969 60230912 ID=MsG0780039228.01.T01:exon:16139;Parent=MsG0780039228.01.T01
Chr7 exon 60231060 60231104 60231060 ID=MsG0780039228.01.T01:exon:16140;Parent=MsG0780039228.01.T01
Chr7 exon 60231370 60231447 60231370 ID=MsG0780039228.01.T01:exon:16141;Parent=MsG0780039228.01.T01
Chr7 exon 60231533 60231613 60231533 ID=MsG0780039228.01.T01:exon:16142;Parent=MsG0780039228.01.T01
Chr7 exon 60231982 60232309 60231982 ID=MsG0780039228.01.T01:exon:16143;Parent=MsG0780039228.01.T01
Chr7 five_prime_UTR 60228545 60228618 60228545 ID=MsG0780039228.01.T01:five_prime_utr;Parent=MsG0780039228.01.T01
Chr7 five_prime_UTR 60229304 60229329 60229304 ID=MsG0780039228.01.T01:five_prime_utr;Parent=MsG0780039228.01.T01
Chr7 CDS 60229330 60229391 60229330 ID=MsG0780039228.01.T01:cds;Parent=MsG0780039228.01.T01
Chr7 CDS 60230710 60230832 60230710 ID=MsG0780039228.01.T01:cds;Parent=MsG0780039228.01.T01
Chr7 CDS 60230912 60230969 60230912 ID=MsG0780039228.01.T01:cds;Parent=MsG0780039228.01.T01
Chr7 CDS 60231060 60231104 60231060 ID=MsG0780039228.01.T01:cds;Parent=MsG0780039228.01.T01
Chr7 CDS 60231370 60231447 60231370 ID=MsG0780039228.01.T01:cds;Parent=MsG0780039228.01.T01
Chr7 CDS 60231533 60231613 60231533 ID=MsG0780039228.01.T01:cds;Parent=MsG0780039228.01.T01
Chr7 CDS 60231982 60232053 60231982 ID=MsG0780039228.01.T01:cds;Parent=MsG0780039228.01.T01
Chr7 three_prime_UTR 60232054 60232309 60232054 ID=MsG0780039228.01.T01:three_prime_utr;Parent=MsG0780039228.01.T01
Gene Sequence

>MsG0780039228.01.T01

ATGACAAAGGGCAAGGGAACAGCAAAAACTTCAAGGGATGTTTTGAAACCAGTTGATGACCGAAAAGTAGGAAAGAGAAAGGCTGCTGCTAAACCTGAGAAGGTGCCAAAGACTAAGAAGGAGAAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCTCCCAGCGCTTTCTTCGTCTTCCTTGAGGATTTCAGAAAGACTTTCAAGGCAGAGAACCCTAATGTGAAGGCCGTATCAGCTGTTGGAAAGGCTGGAGGAGAGAAATGGAAATCCTTGACTAAGGCTGAAAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGTTGAGTATGAAAAGCTTATGAATGCTTATAATAACAAGCCAAGTTCAGCGGACGATGACGAGGAGGAATCAGACAAGGACAAATCTGAAGTTAATAATGAAGATGAAGCAAGTGGAGAGGATGACCACCAAGATGATGAGGAAGAGGACGACGAGGACGAAGATGACGATGACGATGAAGACGATGAGTGA
Protein sequence

>MsG0780039228.01.T01

MTKGKGTAKTSRDVLKPVDDRKVGKRKAAAKPEKVPKTKKEKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLMNAYNNKPSSADDDEEESDKDKSEVNNEDEASGEDDHQDDEEEDDEDEDDDDDEDDE*