AlfalfaGEDB | MsG0780039532.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039532.01

KEGG: -
GO: -
PFAM: PF03195

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039532.01.T01	XP_003623743.1	96.954	197	6	0	1	197	1	197	7.80E-139	395

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039532.01.T01	O22132	71.429	119	31	3	15	132	19	135	6.66E-52	168

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039532.01.T01	G7L0B7	96.954	197	6	0	1	197	1	197	3.73e-139	395

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TFs/TRs:

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Gene ID	Type	Classification
MsG0780039532.01.T01	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039532.01.T01	MTR_7g075230	96.954	197	6	0	1	197	1	197	9.45e-143	395
MsG0780039532.01.T01	MTR_8g036105	62.312	199	62	6	4	197	10	200	1.06e-69	211
MsG0780039532.01.T01	MTR_8g036085	72.642	106	27	2	11	116	22	125	6.43e-52	167
MsG0780039532.01.T01	MTR_7g074990	67.619	105	32	2	12	116	20	122	4.47e-46	152
MsG0780039532.01.T01	MTR_7g096610	65.546	119	36	4	10	125	6	122	2.11e-45	150
MsG0780039532.01.T01	MTR_1g070205	66.337	101	32	2	12	112	12	110	1.87e-44	147
MsG0780039532.01.T01	MTR_7g096530	65.487	113	37	2	4	116	6	116	3.42e-44	146
MsG0780039532.01.T01	MTR_1g070220	44.809	183	87	4	10	182	13	191	8.66e-42	140
MsG0780039532.01.T01	MTR_6g027710	62.385	109	37	3	12	120	40	144	1.06e-39	135
MsG0780039532.01.T01	MTR_5g080470	61.616	99	36	2	10	108	5	101	3.15e-39	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039532.01.T01	AT2G45410	71.429	119	31	3	15	132	19	135	6.79e-53	168
MsG0780039532.01.T01	AT4G00210	63.971	136	43	3	10	141	9	142	2.39e-52	167
MsG0780039532.01.T01	AT2G45420	75.238	105	24	2	15	119	40	142	2.21e-48	159
MsG0780039532.01.T01	AT4G00220	69.524	105	30	2	15	119	20	122	1.87e-45	150
MsG0780039532.01.T01	AT3G03760	68.468	111	32	3	12	122	51	158	6.75e-45	150
MsG0780039532.01.T01	AT3G58190	57.851	121	49	2	12	132	11	129	1.16e-44	148
MsG0780039532.01.T01	AT2G42430	56.934	137	48	4	10	137	13	147	6.29e-44	147
MsG0780039532.01.T01	AT2G42440	55.200	125	49	3	10	129	5	127	1.48e-42	143
MsG0780039532.01.T01	AT5G06080	48.026	152	64	4	10	151	5	151	5.09e-40	134
MsG0780039532.01.T01	AT2G31310	58.879	107	42	2	10	116	5	109	1.97e-39	133

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Find 40 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTCTAGGCAAAGCT+TGG	0.490828	7:-65430548	None:intergenic
AAGAGGATGACCAAAGTGCA+TGG	0.603188	7:-65430448	None:intergenic
AGAGAGATGGATTTGGGATG+TGG	0.394313	7:+65427452	None:intergenic
AGAGATGGATTTGGGATGTG+GGG	0.590943	7:+65427454	None:intergenic
AGGGCTACTGACCCTGTTTA+TGG	0.239262	7:+65427701	MsG0780039532.01.T01:CDS
AGTGAGGATGAATGCAAAGT+TGG	0.469384	7:-65430387	None:intergenic
ATTGAAAGCTAAAATTCTCT+AGG	0.516519	7:-65430558	None:intergenic
CCTCTTTGCTCTTCAACAAC+AGG	0.440953	7:+65427736	MsG0780039532.01.T01:CDS
CCTGTTGTTGAAGAGCAAAG+AGG	0.642330	7:-65427736	None:intergenic
CTGCTATGAGGCTCTTGCTA+GGG	0.502068	7:+65427682	MsG0780039532.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTGAAAAATGCAAAGG+GGG	-	Chr7:65429198-65429217	None:intergenic	30.0%
AATGAATATTCTCAAGGTGT+TGG	+	Chr7:65427936-65427955	MsG0780039532.01.T01:intron	30.0%
ACAGCTAATGAATATTCTCA+AGG	+	Chr7:65427930-65427949	MsG0780039532.01.T01:intron	30.0%
ATGTTTGATCGTGCATTTAA+TGG	-	Chr7:65428955-65428974	None:intergenic	30.0%
CAAAAGATAAGGTAACAAAC+GGG	-	Chr7:65429828-65429847	None:intergenic	30.0%
CAAATAGGTGGTTACATTAA+GGG	+	Chr7:65429423-65429442	MsG0780039532.01.T01:intron	30.0%
CATACAAACAAAGGACAATT+TGG	-	Chr7:65429274-65429293	None:intergenic	30.0%
CATCATATTCCAATATTGTG+TGG	-	Chr7:65429584-65429603	None:intergenic	30.0%
CATCTAGTAATTTGAAAAGG+GGG	+	Chr7:65429375-65429394	MsG0780039532.01.T01:intron	30.0%
CCACTAAAAGGAAACTAATA+AGG	-	Chr7:65427975-65427994	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	65427458	65430572	65427458	ID=MsG0780039532.01;Name=MsG0780039532.01
Chr7	mRNA	65427458	65430572	65427458	ID=MsG0780039532.01.T01;Parent=MsG0780039532.01;Name=MsG0780039532.01.T01;_AED=0.45;_eAED=0.47;_QI=0\|0\|0\|1\|1\|1\|2\|0\|197
Chr7	exon	65427458	65427757	65427458	ID=MsG0780039532.01.T01:exon:17747;Parent=MsG0780039532.01.T01
Chr7	exon	65430279	65430572	65430279	ID=MsG0780039532.01.T01:exon:17748;Parent=MsG0780039532.01.T01
Chr7	CDS	65427458	65427757	65427458	ID=MsG0780039532.01.T01:cds;Parent=MsG0780039532.01.T01
Chr7	CDS	65430279	65430572	65430279	ID=MsG0780039532.01.T01:cds;Parent=MsG0780039532.01.T01

Gene Sequence

>MsG0780039532.01.T01

ATGGATTTGGGATGTGGGGATGACGGTGGTGGGCCTTGTGGTGCTTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGTTGTTGCATATTTGCACCATATTTTGAGTCATCAGGTCAAGGAAGTGCTCATTTTGCTGCAGTTCATAAGGTGTTTGGTGCTAGCAATGCTGCTAAGCTACTCACACGTATTCCAGTTCATAAGCGTCTTGATGCTGTTGTTACTCTCTGCTATGAGGCTCTTGCTAGGGCTACTGACCCTGTTTATGGTTGTGTTGCTCACCTCTTTGCTCTTCAACAACAGGTTGTGGAGTTGCAAGCAGAGTTAGCCTATGTACAAGCCCGTCTTTCAATATTGAATCGCATTTCTGAAGATCCTCAATTTCAACAGCCTCAAAGCTCTTCAATATCCCCAACTTTGCATTCATCCTCACTTCATCATTTGTCATCAAACAATGAAACTTCTTACATGTCCATGCACTTTGGTCATCCTCTTCAACTTCAATATCATCCAACACCTTTTGAAAATCCATCATACTATTCCTATCATCAACAACTTCATGACCAGGAATTCCAAGCTTTGCCTAGAGAATTTTAG

Protein sequence

>MsG0780039532.01.T01

MDLGCGDDGGGPCGACKFLRRKCVKGCCIFAPYFESSGQGSAHFAAVHKVFGASNAAKLLTRIPVHKRLDAVVTLCYEALARATDPVYGCVAHLFALQQQVVELQAELAYVQARLSILNRISEDPQFQQPQSSSISPTLHSSSLHHLSSNNETSYMSMHFGHPLQLQYHPTPFENPSYYSYHQQLHDQEFQALPREF*