AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039532.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039532.01.T01 MTR_7g075230 96.954 197 6 0 1 197 1 197 9.45e-143 395
MsG0780039532.01.T01 MTR_8g036105 62.312 199 62 6 4 197 10 200 1.06e-69 211
MsG0780039532.01.T01 MTR_8g036085 72.642 106 27 2 11 116 22 125 6.43e-52 167
MsG0780039532.01.T01 MTR_7g074990 67.619 105 32 2 12 116 20 122 4.47e-46 152
MsG0780039532.01.T01 MTR_7g096610 65.546 119 36 4 10 125 6 122 2.11e-45 150
MsG0780039532.01.T01 MTR_1g070205 66.337 101 32 2 12 112 12 110 1.87e-44 147
MsG0780039532.01.T01 MTR_7g096530 65.487 113 37 2 4 116 6 116 3.42e-44 146
MsG0780039532.01.T01 MTR_1g070220 44.809 183 87 4 10 182 13 191 8.66e-42 140
MsG0780039532.01.T01 MTR_6g027710 62.385 109 37 3 12 120 40 144 1.06e-39 135
MsG0780039532.01.T01 MTR_5g080470 61.616 99 36 2 10 108 5 101 3.15e-39 133
MsG0780039532.01.T01 MTR_5g083230 51.938 129 55 3 9 133 3 128 3.18e-36 124
MsG0780039532.01.T01 MTR_3g071590 48.092 131 65 2 6 136 2 129 6.30e-35 121
MsG0780039532.01.T01 MTR_7g033800 53.043 115 51 2 12 126 11 122 1.03e-32 115
MsG0780039532.01.T01 MTR_2g068760 52.632 114 45 3 8 115 3 113 1.86e-32 115
MsG0780039532.01.T01 MTR_3g031660 51.402 107 49 2 9 115 4 107 4.91e-32 114
MsG0780039532.01.T01 MTR_4g060950 42.208 154 72 4 11 150 23 173 1.38e-31 113
MsG0780039532.01.T01 MTR_4g105170 58.586 99 38 2 10 108 9 104 1.93e-31 113
MsG0780039532.01.T01 MTR_3g077240 55.660 106 44 2 10 115 8 110 3.20e-31 112
MsG0780039532.01.T01 MTR_6g005070 53.704 108 47 2 12 119 9 113 4.24e-31 110
MsG0780039532.01.T01 MTR_4g083680 54.902 102 43 2 12 113 15 113 5.16e-31 111
MsG0780039532.01.T01 MTR_6g027700 50.893 112 53 2 8 119 3 112 1.51e-30 111
MsG0780039532.01.T01 MTR_5g083010 51.923 104 47 2 13 116 12 112 2.47e-30 110
MsG0780039532.01.T01 MTR_5g083960 42.038 157 81 4 12 162 39 191 9.09e-29 106
MsG0780039532.01.T01 MTR_2g093310 49.524 105 50 2 11 115 32 133 1.02e-28 106
MsG0780039532.01.T01 MTR_3g452660 52.778 108 48 2 12 119 7 111 1.88e-28 108
MsG0780039532.01.T01 MTR_6g005080 51.923 104 47 2 12 115 10 110 2.55e-28 103
MsG0780039532.01.T01 MTR_3g073690 50.926 108 50 2 9 116 6 110 6.57e-28 104
MsG0780039532.01.T01 MTR_3g071420 50.000 100 47 2 13 112 15 111 2.34e-27 102
MsG0780039532.01.T01 MTR_5g017950 52.381 105 47 2 12 116 8 109 3.95e-27 105
MsG0780039532.01.T01 MTR_1g095850 50.485 103 48 2 13 115 73 172 1.34e-26 101
MsG0780039532.01.T01 MTR_3g094690 50.962 104 48 2 12 115 47 147 1.56e-26 101
MsG0780039532.01.T01 MTR_3g094690 50.962 104 47 3 12 115 47 146 8.53e-25 97.4
MsG0780039532.01.T01 MTR_5g075020 53.846 104 45 2 12 115 43 143 8.69e-23 91.7
MsG0780039532.01.T01 MTR_5g075020 53.846 104 45 2 12 115 47 147 1.42e-22 91.3
MsG0780039532.01.T01 MTR_5g093010 42.453 106 58 2 11 116 4 106 2.67e-22 88.2
MsG0780039532.01.T01 MTR_8g040900 49.550 111 53 2 12 122 7 114 1.47e-21 88.6
MsG0780039532.01.T01 MTR_7g028905 38.462 104 61 2 13 116 6 106 3.75e-20 82.0
MsG0780039532.01.T01 MTR_8g079660 39.048 105 61 2 12 116 8 109 1.57e-17 78.6
MsG0780039532.01.T01 MTR_8g079620 40.952 105 59 2 12 116 8 109 2.14e-16 75.1
MsG0780039532.01.T01 MTR_2g100020 37.143 105 63 2 13 117 20 121 1.07e-15 73.6
MsG0780039532.01.T01 MTR_8g017090 37.736 106 63 2 13 118 13 115 3.04e-15 72.8
MsG0780039532.01.T01 MTR_6g011250 39.623 106 60 3 13 117 10 112 4.23e-15 70.5
MsG0780039532.01.T01 MTR_8g079580 36.538 104 64 1 12 115 8 109 1.07e-14 70.1
MsG0780039532.01.T01 MTR_4g107450 37.143 105 63 2 13 117 11 112 4.96e-14 69.3
MsG0780039532.01.T01 MTR_6g011230 33.929 112 70 3 1 112 1 108 2.30e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039532.01.T01 AT2G45410 71.429 119 31 3 15 132 19 135 6.79e-53 168
MsG0780039532.01.T01 AT4G00210 63.971 136 43 3 10 141 9 142 2.39e-52 167
MsG0780039532.01.T01 AT2G45420 75.238 105 24 2 15 119 40 142 2.21e-48 159
MsG0780039532.01.T01 AT4G00220 69.524 105 30 2 15 119 20 122 1.87e-45 150
MsG0780039532.01.T01 AT3G03760 68.468 111 32 3 12 122 51 158 6.75e-45 150
MsG0780039532.01.T01 AT3G58190 57.851 121 49 2 12 132 11 129 1.16e-44 148
MsG0780039532.01.T01 AT2G42430 56.934 137 48 4 10 137 13 147 6.29e-44 147
MsG0780039532.01.T01 AT2G42440 55.200 125 49 3 10 129 5 127 1.48e-42 143
MsG0780039532.01.T01 AT5G06080 48.026 152 64 4 10 151 5 151 5.09e-40 134
MsG0780039532.01.T01 AT2G31310 58.879 107 42 2 10 116 5 109 1.97e-39 133
MsG0780039532.01.T01 AT2G30130 50.407 123 57 3 6 128 2 120 9.65e-34 119
MsG0780039532.01.T01 AT5G63090 57.143 105 42 2 12 116 11 112 2.38e-31 112
MsG0780039532.01.T01 AT5G63090 57.143 105 42 2 12 116 11 112 2.38e-31 112
MsG0780039532.01.T01 AT5G63090 57.143 105 42 2 12 116 11 112 2.38e-31 112
MsG0780039532.01.T01 AT5G63090 57.143 105 42 2 12 116 11 112 2.38e-31 112
MsG0780039532.01.T01 AT1G16530 49.153 118 55 2 11 125 13 128 3.45e-31 112
MsG0780039532.01.T01 AT3G27650 53.846 104 45 2 12 115 39 139 3.53e-30 108
MsG0780039532.01.T01 AT1G07900 40.741 162 82 5 11 164 32 187 4.92e-30 109
MsG0780039532.01.T01 AT3G11090 40.260 154 86 3 13 163 12 162 1.45e-29 107
MsG0780039532.01.T01 AT2G28500 50.962 104 48 2 12 115 55 155 9.93e-29 107
MsG0780039532.01.T01 AT5G66870 49.635 137 54 5 12 136 7 140 7.85e-28 107
MsG0780039532.01.T01 AT1G31320 53.333 90 39 2 12 101 13 99 9.62e-28 103
MsG0780039532.01.T01 AT3G26660 44.762 105 55 2 13 117 6 107 2.88e-27 100
MsG0780039532.01.T01 AT3G26620 44.762 105 55 2 13 117 6 107 4.25e-27 100
MsG0780039532.01.T01 AT2G23660 47.115 104 52 2 12 115 5 105 5.02e-25 99.4
MsG0780039532.01.T01 AT2G23660 47.115 104 52 2 12 115 5 105 5.02e-25 99.4
MsG0780039532.01.T01 AT2G23660 47.115 104 52 2 12 115 5 105 5.02e-25 99.4
MsG0780039532.01.T01 AT2G30340 48.077 104 51 2 12 115 52 152 1.40e-24 97.4
MsG0780039532.01.T01 AT2G30340 48.077 104 51 2 12 115 53 153 1.58e-24 97.4
MsG0780039532.01.T01 AT3G50510 43.636 110 59 2 7 116 7 113 4.32e-23 92.0
MsG0780039532.01.T01 AT3G50510 43.636 110 59 2 7 116 7 113 4.32e-23 92.0
MsG0780039532.01.T01 AT2G40470 52.885 104 46 2 12 115 20 120 6.57e-22 89.0
MsG0780039532.01.T01 AT2G40470 52.885 104 46 2 12 115 45 145 7.36e-22 89.4
MsG0780039532.01.T01 AT1G65620 52.381 105 47 2 12 116 9 110 7.70e-22 88.6
MsG0780039532.01.T01 AT1G65620 52.381 105 47 2 12 116 9 110 7.70e-22 88.6
MsG0780039532.01.T01 AT1G65620 52.381 105 47 2 12 116 9 110 7.70e-22 88.6
MsG0780039532.01.T01 AT1G65620 52.381 105 47 2 12 116 9 110 7.70e-22 88.6
MsG0780039532.01.T01 AT1G65620 52.381 105 47 2 12 116 9 110 7.70e-22 88.6
MsG0780039532.01.T01 AT3G13850 31.902 163 98 5 13 168 37 193 1.15e-15 73.6
MsG0780039532.01.T01 AT1G72980 35.772 123 74 3 9 129 8 127 2.21e-15 72.0
MsG0780039532.01.T01 AT5G35900 33.043 115 74 2 13 127 6 117 4.57e-15 70.9
MsG0780039532.01.T01 AT1G06280 41.558 77 42 2 13 89 25 98 3.01e-12 63.2
MsG0780039532.01.T01 AT3G47870 29.907 107 72 2 11 117 35 138 3.40e-12 64.3

Find 40 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGCTACTGACCCTGTTTA+TGG 0.239262 7:+65427701 MsG0780039532.01.T01:CDS
TTAGAGAGAGAGATGGATTT+GGG 0.271089 7:+65427446 None:intergenic
TTTAGAGAGAGAGATGGATT+TGG 0.290229 7:+65427445 None:intergenic
TAGGCAAAGCTTGGAATTCC+TGG 0.335459 7:-65430539 None:intergenic
GGATGTGGGGATGACGGTGG+TGG 0.364421 7:+65427467 MsG0780039532.01.T01:CDS
TGACCTGATGACTCAAAATA+TGG 0.381006 7:-65427551 None:intergenic
AGAGAGATGGATTTGGGATG+TGG 0.394313 7:+65427452 None:intergenic
CTTTGAGGCTGTTGAAATTG+AGG 0.406522 7:-65430351 None:intergenic
TGAGCAACACAACCATAAAC+AGG 0.407283 7:-65427713 None:intergenic
GCTGCAGTTCATAAGGTGTT+TGG 0.429613 7:+65427590 MsG0780039532.01.T01:CDS
CCTCTTTGCTCTTCAACAAC+AGG 0.440953 7:+65427736 MsG0780039532.01.T01:CDS
GCATCAAGACGCTTATGAAC+TGG 0.441293 7:-65427647 None:intergenic
GAGAGATGGATTTGGGATGT+GGG 0.451155 7:+65427453 None:intergenic
GTGAGGATGAATGCAAAGTT+GGG 0.461415 7:-65430386 None:intergenic
GCGATTCAATATTGAAAGAC+GGG 0.465789 7:-65430316 None:intergenic
AGTGAGGATGAATGCAAAGT+TGG 0.469384 7:-65430387 None:intergenic
TTGGGATGTGGGGATGACGG+TGG 0.470548 7:+65427464 MsG0780039532.01.T01:CDS
GATTTGGGATGTGGGGATGA+CGG 0.487399 7:+65427461 MsG0780039532.01.T01:CDS
AAAATTCTCTAGGCAAAGCT+TGG 0.490828 7:-65430548 None:intergenic
GGGGATATTGAAGAGCTTTG+AGG 0.494424 7:-65430366 None:intergenic
TCTGCTATGAGGCTCTTGCT+AGG 0.495453 7:+65427681 MsG0780039532.01.T01:CDS
CTGCTATGAGGCTCTTGCTA+GGG 0.502068 7:+65427682 MsG0780039532.01.T01:CDS
TCTTACATGTCCATGCACTT+TGG 0.510678 7:+65430438 MsG0780039532.01.T01:CDS
GATGTGGGGATGACGGTGGT+GGG 0.515639 7:+65427468 MsG0780039532.01.T01:CDS
ATTGAAAGCTAAAATTCTCT+AGG 0.516519 7:-65430558 None:intergenic
TGAAAGACGGGCTTGTACAT+AGG 0.516839 7:-65430304 None:intergenic
TGTTGTTACTCTCTGCTATG+AGG 0.534536 7:+65427670 MsG0780039532.01.T01:CDS
TTGAGGAGAAAGTGTGTGAA+AGG 0.541257 7:+65427512 MsG0780039532.01.T01:CDS
TGATGATAGGAATAGTATGA+TGG 0.565940 7:-65430504 None:intergenic
TGCGATTCAATATTGAAAGA+CGG 0.566372 7:-65430317 None:intergenic
GATGACGGTGGTGGGCCTTG+TGG 0.575954 7:+65427476 MsG0780039532.01.T01:CDS
GTCATGAAGTTGTTGATGAT+AGG 0.590256 7:-65430517 None:intergenic
AGAGATGGATTTGGGATGTG+GGG 0.590943 7:+65427454 None:intergenic
AAGAGGATGACCAAAGTGCA+TGG 0.603188 7:-65430448 None:intergenic
TGAGGATGAATGCAAAGTTG+GGG 0.614688 7:-65430385 None:intergenic
GGATGATATTGAAGTTGAAG+AGG 0.622419 7:-65430465 None:intergenic
TCATCAACAACTTCATGACC+AGG 0.628553 7:+65430521 MsG0780039532.01.T01:CDS
CCTGTTGTTGAAGAGCAAAG+AGG 0.642330 7:-65427736 None:intergenic
TGATGACAAATGATGAAGTG+AGG 0.675536 7:-65430403 None:intergenic
GAGCAACACAACCATAAACA+GGG 0.707824 7:-65427712 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATATTATTGATAAAAT+AGG - Chr7:65428051-65428070 None:intergenic 10.0%
!! TTAAAAATAGGAAATATAAT+AGG - Chr7:65428763-65428782 None:intergenic 10.0%
!! TTATATACTTAATTAATTAC+AGG + Chr7:65430257-65430276 MsG0780039532.01.T01:intron 10.0%
!!! AAATAGGATTTATATTATTT+TGG - Chr7:65428035-65428054 None:intergenic 10.0%
!!! ATTTTATCAATAATATTCTT+TGG + Chr7:65428051-65428070 MsG0780039532.01.T01:intron 10.0%
!!! TATTATATTTCCTATTTTTA+AGG + Chr7:65428762-65428781 MsG0780039532.01.T01:intron 10.0%
!!! TATTATTTTGGAAAATAAAT+AGG - Chr7:65428023-65428042 None:intergenic 10.0%
!! ATTCAAGAAAAACTTATAAT+AGG + Chr7:65427900-65427919 MsG0780039532.01.T01:intron 15.0%
!! CAGAAAAAAAGAAAAAAAAA+AGG + Chr7:65428193-65428212 MsG0780039532.01.T01:intron 15.0%
!! GTTAATATTATAATATTCCA+AGG - Chr7:65428790-65428809 None:intergenic 15.0%
!! TAAATAGGATTTATATTGTT+TGG - Chr7:65428008-65428027 None:intergenic 15.0%
!! TATTTAGAAAAAAAGATGTT+TGG - Chr7:65428812-65428831 None:intergenic 15.0%
!!! AGTTTATTAAATTTTATTCC+CGG + Chr7:65428644-65428663 MsG0780039532.01.T01:intron 15.0%
!!! ATGCAATGTAAAATAAATTT+TGG - Chr7:65428429-65428448 None:intergenic 15.0%
!!! CTTTTTTTTTTCTTTTTTTC+TGG - Chr7:65428195-65428214 None:intergenic 15.0%
!! AAAGACAATCTCTAAATTAT+TGG + Chr7:65430040-65430059 MsG0780039532.01.T01:intron 20.0%
!! AAATGTTAATAGTACCTTTA+GGG + Chr7:65429127-65429146 MsG0780039532.01.T01:intron 20.0%
!! AAGTCACACAAAAAAAAAAA+AGG + Chr7:65429103-65429122 MsG0780039532.01.T01:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + Chr7:65429326-65429345 MsG0780039532.01.T01:intron 20.0%
!! AAGTTATAATTGTAGATTTC+TGG + Chr7:65428581-65428600 MsG0780039532.01.T01:intron 20.0%
!! AATAAACTTGTAACAAACAT+AGG - Chr7:65428632-65428651 None:intergenic 20.0%
!! AATTAAATAAGTATCCTAAC+TGG + Chr7:65428139-65428158 MsG0780039532.01.T01:intron 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG + Chr7:65429324-65429343 MsG0780039532.01.T01:intron 20.0%
!! AGAAGAATGGTTTAATAAAT+TGG + Chr7:65428075-65428094 MsG0780039532.01.T01:intron 20.0%
!! AGTCACACAAAAAAAAAAAA+GGG + Chr7:65429104-65429123 MsG0780039532.01.T01:intron 20.0%
!! AGTTATAATTGTAGATTTCT+GGG + Chr7:65428582-65428601 MsG0780039532.01.T01:intron 20.0%
!! ATAATTGTATTTAGACTACT+AGG - Chr7:65430241-65430260 None:intergenic 20.0%
!! ATACCATATAAATGATCAAT+AGG - Chr7:65430201-65430220 None:intergenic 20.0%
!! ATATAAATGATCAATAGGTT+AGG - Chr7:65430196-65430215 None:intergenic 20.0%
!! ATGACTTACATAATGTTATT+TGG - Chr7:65429547-65429566 None:intergenic 20.0%
!! CAAAAATAAAATCAAATAGG+TGG + Chr7:65429411-65429430 MsG0780039532.01.T01:intron 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG + Chr7:65429325-65429344 MsG0780039532.01.T01:intron 20.0%
!! CTAATACATTACACAATAAT+GGG + Chr7:65430111-65430130 MsG0780039532.01.T01:intron 20.0%
!! GGACAAAAATAAAATCAAAT+AGG + Chr7:65429408-65429427 MsG0780039532.01.T01:intron 20.0%
!! TAACCTATTGATCATTTATA+TGG + Chr7:65430195-65430214 MsG0780039532.01.T01:intron 20.0%
!! TAATACATTACACAATAATG+GGG + Chr7:65430112-65430131 MsG0780039532.01.T01:intron 20.0%
!! TATAAATGATCAATAGGTTA+GGG - Chr7:65430195-65430214 None:intergenic 20.0%
!! TGTATAAATACAACTATGTT+AGG - Chr7:65429767-65429786 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG - Chr7:65429283-65429302 None:intergenic 20.0%
!! TTTCTAATTCACAAAAGATA+AGG - Chr7:65429839-65429858 None:intergenic 20.0%
!!! ATCTTTTTTTCTAAATACCT+TGG + Chr7:65428815-65428834 MsG0780039532.01.T01:intron 20.0%
!!! GTTTATTAAATTTTATTCCC+GGG + Chr7:65428645-65428664 MsG0780039532.01.T01:intron 20.0%
!!! TATATTGCTTTAATTTGTTC+AGG - Chr7:65428303-65428322 None:intergenic 20.0%
!!! TCAAAGGCATAATATAATTA+AGG + Chr7:65428928-65428947 MsG0780039532.01.T01:intron 20.0%
!!! TGACTTACATAATGTTATTT+GGG - Chr7:65429546-65429565 None:intergenic 20.0%
! AAGAAATGTGAAAAATGCAA+AGG - Chr7:65429201-65429220 None:intergenic 25.0%
! AATATTCTTTGGTAGAAGAA+TGG + Chr7:65428062-65428081 MsG0780039532.01.T01:intron 25.0%
! AATTTGTACATTCAAAGCAT+TGG + Chr7:65429473-65429492 MsG0780039532.01.T01:intron 25.0%
! ACAAAAGATAAGGTAACAAA+CGG - Chr7:65429829-65429848 None:intergenic 25.0%
! ACTTAATTAATTACAGGTTG+TGG + Chr7:65430263-65430282 MsG0780039532.01.T01:intron 25.0%
! AGAAATGTGAAAAATGCAAA+GGG - Chr7:65429200-65429219 None:intergenic 25.0%
! AGAAGAAAGATCATATTCAT+AGG + Chr7:65428238-65428257 MsG0780039532.01.T01:intron 25.0%
! AGTGTAACAAATTTATTCCT+AGG - Chr7:65428879-65428898 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + Chr7:65429372-65429391 MsG0780039532.01.T01:intron 25.0%
! ATTCCTATCTTTATATTCCA+AGG + Chr7:65428844-65428863 MsG0780039532.01.T01:intron 25.0%
! ATTCCTTGGAATATAAAGAT+AGG - Chr7:65428850-65428869 None:intergenic 25.0%
! ATTTCACTTCATTAAAGAGT+GGG - Chr7:65429653-65429672 None:intergenic 25.0%
! CTTGATCAATATTAGTGTTT+AGG - Chr7:65430160-65430179 None:intergenic 25.0%
! GAAATGTTAATAGTACCTTT+AGG + Chr7:65429126-65429145 MsG0780039532.01.T01:intron 25.0%
! GAAGAAAGATCATATTCATA+GGG + Chr7:65428239-65428258 MsG0780039532.01.T01:intron 25.0%
! GCTAATACATTACACAATAA+TGG + Chr7:65430110-65430129 MsG0780039532.01.T01:intron 25.0%
! TCTAAAGAAAATTACCAGTT+AGG - Chr7:65428156-65428175 None:intergenic 25.0%
! TGCATCTAGTAATTTGAAAA+GGG + Chr7:65429373-65429392 MsG0780039532.01.T01:intron 25.0%
! TGTATTAGCCATGAAATTAA+AGG - Chr7:65430099-65430118 None:intergenic 25.0%
! TTGATACAGTGTATAACATT+TGG + Chr7:65427780-65427799 MsG0780039532.01.T01:intron 25.0%
!! AAAAGTTTTCCCAAAGAAAA+TGG + Chr7:65428690-65428709 MsG0780039532.01.T01:intron 25.0%
!! AAGATAGGAATTTTATTCCA+AGG - Chr7:65428835-65428854 None:intergenic 25.0%
!! AATTTTATTCTCATCTCCAT+GGG - Chr7:65428729-65428748 None:intergenic 25.0%
!! ACAAATGACCTTTAATTTCA+TGG + Chr7:65430088-65430107 MsG0780039532.01.T01:intron 25.0%
!! ATTAGTGTTTAGGATAATGT+TGG - Chr7:65430150-65430169 None:intergenic 25.0%
!! TAATTTTATTCTCATCTCCA+TGG - Chr7:65428730-65428749 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + Chr7:65429336-65429355 MsG0780039532.01.T01:intron 25.0%
!!! TAGTATGATGGATTTTCAAA+AGG - Chr7:65430495-65430514 None:intergenic 25.0%
!!! TGCTTTTGATACTTTAAAGA+TGG + Chr7:65429678-65429697 MsG0780039532.01.T01:intron 25.0%
AAATGTGAAAAATGCAAAGG+GGG - Chr7:65429198-65429217 None:intergenic 30.0%
AATGAATATTCTCAAGGTGT+TGG + Chr7:65427936-65427955 MsG0780039532.01.T01:intron 30.0%
ACAGCTAATGAATATTCTCA+AGG + Chr7:65427930-65427949 MsG0780039532.01.T01:intron 30.0%
ATGTTTGATCGTGCATTTAA+TGG - Chr7:65428955-65428974 None:intergenic 30.0%
CAAAAGATAAGGTAACAAAC+GGG - Chr7:65429828-65429847 None:intergenic 30.0%
CAAATAGGTGGTTACATTAA+GGG + Chr7:65429423-65429442 MsG0780039532.01.T01:intron 30.0%
CATACAAACAAAGGACAATT+TGG - Chr7:65429274-65429293 None:intergenic 30.0%
CATCATATTCCAATATTGTG+TGG - Chr7:65429584-65429603 None:intergenic 30.0%
CATCTAGTAATTTGAAAAGG+GGG + Chr7:65429375-65429394 MsG0780039532.01.T01:intron 30.0%
CCACTAAAAGGAAACTAATA+AGG - Chr7:65427975-65427994 None:intergenic 30.0%
GAAATGTGAAAAATGCAAAG+GGG - Chr7:65429199-65429218 None:intergenic 30.0%
GATTTCACTTCATTAAAGAG+TGG - Chr7:65429654-65429673 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG + Chr7:65429374-65429393 MsG0780039532.01.T01:intron 30.0%
TCAAATAGGTGGTTACATTA+AGG + Chr7:65429422-65429441 MsG0780039532.01.T01:intron 30.0%
TGATGATAGGAATAGTATGA+TGG - Chr7:65430507-65430526 None:intergenic 30.0%
TGCGATTCAATATTGAAAGA+CGG - Chr7:65430320-65430339 None:intergenic 30.0%
TGTATTGAGTATGTTCTGTT+GGG + Chr7:65428454-65428473 MsG0780039532.01.T01:intron 30.0%
TTCCAAGGAACCTTAAAAAT+AGG - Chr7:65428775-65428794 None:intergenic 30.0%
TTGTATTGAGTATGTTCTGT+TGG + Chr7:65428453-65428472 MsG0780039532.01.T01:intron 30.0%
! AATATTGGAATATGATGACG+AGG + Chr7:65429587-65429606 MsG0780039532.01.T01:intron 30.0%
! ATATTGGAATATGATGACGA+GGG + Chr7:65429588-65429607 MsG0780039532.01.T01:intron 30.0%
! TTATTCCCACCATTTTCTTT+GGG - Chr7:65428702-65428721 None:intergenic 30.0%
! TTTATTCCCACCATTTTCTT+TGG - Chr7:65428703-65428722 None:intergenic 30.0%
!! ACATTTGGTGCTTTAAAAAC+TGG + Chr7:65427795-65427814 MsG0780039532.01.T01:intron 30.0%
!! CCTTATTAGTTTCCTTTTAG+TGG + Chr7:65427972-65427991 MsG0780039532.01.T01:intron 30.0%
!!! TGTGTACTTTTCTAAAGTAG+TGG + Chr7:65428361-65428380 MsG0780039532.01.T01:intron 30.0%
!!! TTCCTATTTTTAAGGTTCCT+TGG + Chr7:65428770-65428789 MsG0780039532.01.T01:intron 30.0%
AAAATTCTCTAGGCAAAGCT+TGG - Chr7:65430551-65430570 None:intergenic 35.0%
AAGTGTCACAACATAGTGTT+AGG + Chr7:65429801-65429820 MsG0780039532.01.T01:intron 35.0%
AAGTTTCATGGTAAGTCTAG+TGG - Chr7:65428999-65429018 None:intergenic 35.0%
AATGTGAAAAATGCAAAGGG+GGG - Chr7:65429197-65429216 None:intergenic 35.0%
AGTTTCATGGTAAGTCTAGT+GGG - Chr7:65428998-65429017 None:intergenic 35.0%
ATGTGAGGAACTAAGTTTCA+TGG - Chr7:65429011-65429030 None:intergenic 35.0%
GCGATTCAATATTGAAAGAC+GGG - Chr7:65430319-65430338 None:intergenic 35.0%
GGATGATATTGAAGTTGAAG+AGG - Chr7:65430468-65430487 None:intergenic 35.0%
GTAATCATCACATGAATGTG+AGG - Chr7:65429026-65429045 None:intergenic 35.0%
TCATGTCAACCACACAATAT+TGG + Chr7:65429572-65429591 MsG0780039532.01.T01:intron 35.0%
TGAAAAGGGGGTTACATTTA+GGG + Chr7:65429387-65429406 MsG0780039532.01.T01:intron 35.0%
TGACCTGATGACTCAAAATA+TGG - Chr7:65427554-65427573 None:intergenic 35.0%
TGATGACAAATGATGAAGTG+AGG - Chr7:65430406-65430425 None:intergenic 35.0%
TTCCAAGGAATGTTATTCCT+AGG + Chr7:65428859-65428878 MsG0780039532.01.T01:intron 35.0%
TTCCTAGGAATAACATTCCT+TGG - Chr7:65428864-65428883 None:intergenic 35.0%
TTGAAAAGGGGGTTACATTT+AGG + Chr7:65429386-65429405 MsG0780039532.01.T01:intron 35.0%
! AGTTTTCCCAAAGAAAATGG+TGG + Chr7:65428693-65428712 MsG0780039532.01.T01:intron 35.0%
! GTTTTCCCAAAGAAAATGGT+GGG + Chr7:65428694-65428713 MsG0780039532.01.T01:intron 35.0%
! TCATTTTGCTGCAGTTCATA+AGG + Chr7:65427583-65427602 MsG0780039532.01.T01:CDS 35.0%
!! AAGGTATAAGAGTATCAGAG+CGG + Chr7:65428212-65428231 MsG0780039532.01.T01:intron 35.0%
!! AGCTCTGGTTAGGTTTTATA+TGG + Chr7:65428492-65428511 MsG0780039532.01.T01:intron 35.0%
!! GATGGATTTTCAAAAGGTGT+TGG - Chr7:65430489-65430508 None:intergenic 35.0%
!! GTCATGAAGTTGTTGATGAT+AGG - Chr7:65430520-65430539 None:intergenic 35.0%
!! TATTTTGAGTCATCAGGTCA+AGG + Chr7:65427554-65427573 MsG0780039532.01.T01:CDS 35.0%
AAAAACTTGCAAGCACCACA+AGG - Chr7:65427494-65427513 None:intergenic 40.0%
AAAACTGGTAACCACTAACC+TGG + Chr7:65427810-65427829 MsG0780039532.01.T01:intron 40.0%
ACATAACACTACCGTGAAAG+GGG - Chr7:65428542-65428561 None:intergenic 40.0%
AGTGAGGATGAATGCAAAGT+TGG - Chr7:65430390-65430409 None:intergenic 40.0%
CACATAACACTACCGTGAAA+GGG - Chr7:65428543-65428562 None:intergenic 40.0%
GAGCAACACAACCATAAACA+GGG - Chr7:65427715-65427734 None:intergenic 40.0%
GGACAAAAGAGACCACTAAA+AGG - Chr7:65427987-65428006 None:intergenic 40.0%
GTGAGGATGAATGCAAAGTT+GGG - Chr7:65430389-65430408 None:intergenic 40.0%
GTTTCATGGTAAGTCTAGTG+GGG - Chr7:65428997-65429016 None:intergenic 40.0%
TAAAGAGTGGGTGATAGAGT+GGG - Chr7:65429641-65429660 None:intergenic 40.0%
TAGGTGGTTACATTAAGGGA+CGG + Chr7:65429427-65429446 MsG0780039532.01.T01:intron 40.0%
TCATCAACAACTTCATGACC+AGG + Chr7:65430521-65430540 MsG0780039532.01.T01:CDS 40.0%
TCTTACATGTCCATGCACTT+TGG + Chr7:65430438-65430457 MsG0780039532.01.T01:CDS 40.0%
TGAGCAACACAACCATAAAC+AGG - Chr7:65427716-65427735 None:intergenic 40.0%
TGAGGATGAATGCAAAGTTG+GGG - Chr7:65430388-65430407 None:intergenic 40.0%
TGGAACGAATGCATACACTA+AGG + Chr7:65428512-65428531 MsG0780039532.01.T01:intron 40.0%
TGTTGTTACTCTCTGCTATG+AGG + Chr7:65427670-65427689 MsG0780039532.01.T01:CDS 40.0%
TTAAAGAGTGGGTGATAGAG+TGG - Chr7:65429642-65429661 None:intergenic 40.0%
TTTGACACATTTGTCAGCTC+TGG + Chr7:65428477-65428496 MsG0780039532.01.T01:intron 40.0%
! GGGAAAACTTTTCTATTCCC+AGG - Chr7:65428682-65428701 None:intergenic 40.0%
! TCCCAGGAACATTTTATACC+CGG - Chr7:65428666-65428685 None:intergenic 40.0%
! TTGAGGAGAAAGTGTGTGAA+AGG + Chr7:65427512-65427531 MsG0780039532.01.T01:CDS 40.0%
!! AGGTATAAGAGTATCAGAGC+GGG + Chr7:65428213-65428232 MsG0780039532.01.T01:intron 40.0%
!! ATCCTTAAAGAGTGCCCTAA+AGG - Chr7:65429144-65429163 None:intergenic 40.0%
!! CCTTTGAGATCACAAGACAT+GGG - Chr7:65428915-65428934 None:intergenic 40.0%
!! CTTTGAGGCTGTTGAAATTG+AGG - Chr7:65430354-65430373 None:intergenic 40.0%
!! GCACCATATTTTGAGTCATC+AGG + Chr7:65427548-65427567 MsG0780039532.01.T01:CDS 40.0%
!! TACCTTTAGGGCACTCTTTA+AGG + Chr7:65429139-65429158 MsG0780039532.01.T01:intron 40.0%
!! TTATGAACTTGTTACCCTCC+AGG - Chr7:65427831-65427850 None:intergenic 40.0%
AAGAGGATGACCAAAGTGCA+TGG - Chr7:65430451-65430470 None:intergenic 45.0%
CACGGTAGTGTTATGTGCAT+GGG + Chr7:65428546-65428565 MsG0780039532.01.T01:intron 45.0%
CCCATGTCTTGTGATCTCAA+AGG + Chr7:65428912-65428931 MsG0780039532.01.T01:intron 45.0%
CCCGGGTATAAAATGTTCCT+GGG + Chr7:65428662-65428681 MsG0780039532.01.T01:intron 45.0%
CCTCTTTGCTCTTCAACAAC+AGG + Chr7:65427736-65427755 MsG0780039532.01.T01:CDS 45.0%
CCTGTTGTTGAAGAGCAAAG+AGG - Chr7:65427739-65427758 None:intergenic 45.0%
GCAAAGGGGGGTTACATTAA+GGG - Chr7:65429185-65429204 None:intergenic 45.0%
GCACATAACACTACCGTGAA+AGG - Chr7:65428544-65428563 None:intergenic 45.0%
GCATCAAGACGCTTATGAAC+TGG - Chr7:65427650-65427669 None:intergenic 45.0%
GGGGATATTGAAGAGCTTTG+AGG - Chr7:65430369-65430388 None:intergenic 45.0%
TAGGCAAAGCTTGGAATTCC+TGG - Chr7:65430542-65430561 None:intergenic 45.0%
TCACGGTAGTGTTATGTGCA+TGG + Chr7:65428545-65428564 MsG0780039532.01.T01:intron 45.0%
TCCCGGGTATAAAATGTTCC+TGG + Chr7:65428661-65428680 MsG0780039532.01.T01:intron 45.0%
TGCAAAGGGGGGTTACATTA+AGG - Chr7:65429186-65429205 None:intergenic 45.0%
TGGGTGATAGAGTGGGATAT+TGG - Chr7:65429634-65429653 None:intergenic 45.0%
TGGTGGGAATAAAGTTCCCA+TGG + Chr7:65428710-65428729 MsG0780039532.01.T01:intron 45.0%
TGGTTACATTAAGGGACGGA+GGG + Chr7:65429431-65429450 MsG0780039532.01.T01:intron 45.0%
! CACATTTGTCAGCTCTGGTT+AGG + Chr7:65428482-65428501 MsG0780039532.01.T01:intron 45.0%
! CCCAGGAACATTTTATACCC+GGG - Chr7:65428665-65428684 None:intergenic 45.0%
! GCTGCAGTTCATAAGGTGTT+TGG + Chr7:65427590-65427609 MsG0780039532.01.T01:CDS 45.0%
! GTGGTGCTTGCAAGTTTTTG+AGG + Chr7:65427495-65427514 MsG0780039532.01.T01:CDS 45.0%
! TGAAAGACGGGCTTGTACAT+AGG - Chr7:65430307-65430326 None:intergenic 45.0%
!! GCCTTTGAGATCACAAGACA+TGG - Chr7:65428916-65428935 None:intergenic 45.0%
!! GGTATAAGAGTATCAGAGCG+GGG + Chr7:65428214-65428233 MsG0780039532.01.T01:intron 45.0%
ACTAAGGCATGCCCCTTTCA+CGG + Chr7:65428528-65428547 MsG0780039532.01.T01:intron 50.0%
ACTGGTAACCACTAACCTGG+AGG + Chr7:65427813-65427832 MsG0780039532.01.T01:intron 50.0%
AGGGCTACTGACCCTGTTTA+TGG + Chr7:65427701-65427720 MsG0780039532.01.T01:CDS 50.0%
AGGGGGGTTACATTAAGGGA+CGG - Chr7:65429181-65429200 None:intergenic 50.0%
CTGCTATGAGGCTCTTGCTA+GGG + Chr7:65427682-65427701 MsG0780039532.01.T01:CDS 50.0%
CTGGTAACCACTAACCTGGA+GGG + Chr7:65427814-65427833 MsG0780039532.01.T01:intron 50.0%
CTTGTTACCCTCCAGGTTAG+TGG - Chr7:65427824-65427843 None:intergenic 50.0%
GGGTTACATTAAGGGACGGA+GGG - Chr7:65429177-65429196 None:intergenic 50.0%
GTCTAGTGGGGTAAGTCTAG+TGG - Chr7:65428985-65429004 None:intergenic 50.0%
GTGGTTACATTAAGGGACGG+AGG + Chr7:65429430-65429449 MsG0780039532.01.T01:intron 50.0%
TCTGCTATGAGGCTCTTGCT+AGG + Chr7:65427681-65427700 MsG0780039532.01.T01:CDS 50.0%
! GATTTGGGATGTGGGGATGA+CGG + Chr7:65427461-65427480 MsG0780039532.01.T01:CDS 50.0%
GGGGTTACATTAAGGGACGG+AGG - Chr7:65429178-65429197 None:intergenic 55.0%
! GATGTGGGGATGACGGTGGT+GGG + Chr7:65427468-65427487 MsG0780039532.01.T01:CDS 60.0%
! TTGGGATGTGGGGATGACGG+TGG + Chr7:65427464-65427483 MsG0780039532.01.T01:CDS 60.0%
! GGATGTGGGGATGACGGTGG+TGG + Chr7:65427467-65427486 MsG0780039532.01.T01:CDS 65.0%
!! GATGACGGTGGTGGGCCTTG+TGG + Chr7:65427476-65427495 MsG0780039532.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 65427458 65430572 65427458 ID=MsG0780039532.01;Name=MsG0780039532.01
Chr7 mRNA 65427458 65430572 65427458 ID=MsG0780039532.01.T01;Parent=MsG0780039532.01;Name=MsG0780039532.01.T01;_AED=0.45;_eAED=0.47;_QI=0|0|0|1|1|1|2|0|197
Chr7 exon 65427458 65427757 65427458 ID=MsG0780039532.01.T01:exon:17747;Parent=MsG0780039532.01.T01
Chr7 exon 65430279 65430572 65430279 ID=MsG0780039532.01.T01:exon:17748;Parent=MsG0780039532.01.T01
Chr7 CDS 65427458 65427757 65427458 ID=MsG0780039532.01.T01:cds;Parent=MsG0780039532.01.T01
Chr7 CDS 65430279 65430572 65430279 ID=MsG0780039532.01.T01:cds;Parent=MsG0780039532.01.T01
Gene Sequence

>MsG0780039532.01.T01

ATGGATTTGGGATGTGGGGATGACGGTGGTGGGCCTTGTGGTGCTTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGTTGTTGCATATTTGCACCATATTTTGAGTCATCAGGTCAAGGAAGTGCTCATTTTGCTGCAGTTCATAAGGTGTTTGGTGCTAGCAATGCTGCTAAGCTACTCACACGTATTCCAGTTCATAAGCGTCTTGATGCTGTTGTTACTCTCTGCTATGAGGCTCTTGCTAGGGCTACTGACCCTGTTTATGGTTGTGTTGCTCACCTCTTTGCTCTTCAACAACAGGTTGTGGAGTTGCAAGCAGAGTTAGCCTATGTACAAGCCCGTCTTTCAATATTGAATCGCATTTCTGAAGATCCTCAATTTCAACAGCCTCAAAGCTCTTCAATATCCCCAACTTTGCATTCATCCTCACTTCATCATTTGTCATCAAACAATGAAACTTCTTACATGTCCATGCACTTTGGTCATCCTCTTCAACTTCAATATCATCCAACACCTTTTGAAAATCCATCATACTATTCCTATCATCAACAACTTCATGACCAGGAATTCCAAGCTTTGCCTAGAGAATTTTAG
Protein sequence

>MsG0780039532.01.T01

MDLGCGDDGGGPCGACKFLRRKCVKGCCIFAPYFESSGQGSAHFAAVHKVFGASNAAKLLTRIPVHKRLDAVVTLCYEALARATDPVYGCVAHLFALQQQVVELQAELAYVQARLSILNRISEDPQFQQPQSSSISPTLHSSSLHHLSSNNETSYMSMHFGHPLQLQYHPTPFENPSYYSYHQQLHDQEFQALPREF*