AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040919.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040919.01.T01 MTR_7g100990 90.226 133 13 0 19 151 69 201 1.52e-85 254
MsG0780040919.01.T01 MTR_2g093810 65.979 97 33 0 19 115 72 168 1.36e-40 139
MsG0780040919.01.T01 MTR_4g081870 50.336 149 64 3 19 165 67 207 1.38e-38 133
MsG0780040919.01.T01 MTR_2g080010 53.279 122 50 1 19 133 73 194 7.61e-38 133
MsG0780040919.01.T01 MTR_2157s0010 51.938 129 53 3 19 138 66 194 6.43e-36 126
MsG0780040919.01.T01 MTR_5g041940 60.194 103 39 1 19 121 61 161 7.31e-35 123
MsG0780040919.01.T01 MTR_4g089135 53.782 119 36 2 19 118 73 191 1.04e-34 124
MsG0780040919.01.T01 MTR_7g085220 50.000 140 57 4 19 145 66 205 2.28e-34 124
MsG0780040919.01.T01 MTR_8g094580 56.566 99 40 1 19 117 11 106 1.26e-32 116
MsG0780040919.01.T01 MTR_8g094580 43.333 150 73 3 1 145 47 189 2.87e-32 117
MsG0780040919.01.T01 MTR_3g088110 56.000 100 40 2 19 118 65 160 5.90e-31 114
MsG0780040919.01.T01 MTR_2g079990 58.000 100 36 3 19 118 74 167 9.83e-31 114
MsG0780040919.01.T01 MTR_3g096920 55.556 99 40 2 19 117 65 159 2.28e-30 112
MsG0780040919.01.T01 MTR_8g059170 58.000 100 38 3 19 118 72 167 3.29e-30 112
MsG0780040919.01.T01 MTR_2g079990 46.032 126 42 4 19 120 74 197 3.51e-26 102
MsG0780040919.01.T01 MTR_3g109340 46.000 100 49 1 19 118 80 174 8.16e-26 101
MsG0780040919.01.T01 MTR_3g109340 46.000 100 48 1 19 118 80 173 1.86e-25 100
MsG0780040919.01.T01 MTR_7g005280 51.064 94 40 1 19 112 70 157 6.49e-25 97.4
MsG0780040919.01.T01 MTR_2g062730 42.188 128 64 3 19 146 71 188 1.52e-24 97.8
MsG0780040919.01.T01 MTR_5g040420 47.115 104 51 2 19 118 72 175 3.72e-24 97.4
MsG0780040919.01.T01 MTR_1g008740 44.545 110 55 2 19 127 72 176 4.56e-24 96.7
MsG0780040919.01.T01 MTR_1g008740 44.545 110 55 2 19 127 86 190 5.05e-24 96.7
MsG0780040919.01.T01 MTR_3g096920 40.741 135 41 2 19 117 65 196 6.78e-24 95.9
MsG0780040919.01.T01 MTR_6g012670 48.148 108 47 3 13 115 67 170 1.03e-23 95.5
MsG0780040919.01.T01 MTR_4g036030 44.444 108 52 2 8 115 57 156 3.69e-23 94.4
MsG0780040919.01.T01 MTR_6g084430 49.485 97 41 2 19 115 63 151 4.43e-23 93.6
MsG0780040919.01.T01 MTR_4g108760 51.546 97 43 3 19 115 75 167 4.87e-23 94.0
MsG0780040919.01.T01 MTR_8g024480 47.059 102 47 2 19 115 76 175 5.78e-23 94.7
MsG0780040919.01.T01 MTR_8g467490 45.794 107 49 3 19 118 72 176 9.43e-23 93.6
MsG0780040919.01.T01 MTR_3g070040 51.648 91 42 1 25 115 69 157 1.14e-22 92.8
MsG0780040919.01.T01 MTR_2g078700 48.454 97 48 1 19 115 81 175 1.36e-22 93.2
MsG0780040919.01.T01 MTR_5g021710 36.875 160 83 5 8 161 58 205 1.37e-22 92.8
MsG0780040919.01.T01 MTR_3g070030 50.515 97 45 2 19 115 77 170 1.76e-22 92.4
MsG0780040919.01.T01 MTR_6g011860 46.729 107 47 3 19 118 73 176 2.17e-22 92.8
MsG0780040919.01.T01 MTR_3g116070 53.750 80 36 1 19 97 81 160 2.27e-22 92.0
MsG0780040919.01.T01 MTR_4g035590 49.485 97 40 2 19 115 69 156 4.22e-22 91.3
MsG0780040919.01.T01 MTR_4g101680 47.423 97 43 2 19 115 68 156 4.66e-22 91.3
MsG0780040919.01.T01 MTR_3g435150 39.041 146 81 4 19 160 74 215 5.41e-22 90.5
MsG0780040919.01.T01 MTR_6g477900 43.434 99 50 2 19 117 66 158 1.01e-21 88.6
MsG0780040919.01.T01 MTR_2g064470 47.959 98 38 3 19 112 67 155 1.79e-21 89.0
MsG0780040919.01.T01 MTR_7g011130 45.370 108 46 3 19 115 77 182 3.40e-21 89.0
MsG0780040919.01.T01 MTR_8g099750 45.098 102 53 2 19 117 70 171 3.40e-21 87.0
MsG0780040919.01.T01 MTR_6g032770 45.745 94 49 2 19 112 76 167 6.05e-21 88.6
MsG0780040919.01.T01 MTR_5g090970 44.444 108 50 5 19 118 75 180 7.05e-21 87.4
MsG0780040919.01.T01 MTR_5g090970 44.444 108 50 5 19 118 76 181 7.83e-21 87.4
MsG0780040919.01.T01 MTR_7g085260 47.475 99 48 3 19 115 75 171 8.69e-21 88.2
MsG0780040919.01.T01 MTR_1g096430 42.453 106 53 2 10 115 59 156 1.29e-20 87.0
MsG0780040919.01.T01 MTR_8g076110 41.667 120 59 3 19 135 67 178 2.01e-20 86.3
MsG0780040919.01.T01 MTR_2g068920 32.468 154 91 3 19 163 80 229 2.03e-20 85.9
MsG0780040919.01.T01 MTR_2g068880 34.839 155 86 4 19 163 81 230 2.14e-20 86.3
MsG0780040919.01.T01 MTR_0036s0150 37.405 131 74 3 19 149 66 188 2.24e-20 87.8
MsG0780040919.01.T01 MTR_7g070140 47.059 85 39 1 19 103 22 100 3.81e-20 82.0
MsG0780040919.01.T01 MTR_5g012080 45.918 98 45 3 19 115 68 158 4.16e-20 85.9
MsG0780040919.01.T01 MTR_1g090723 39.000 100 55 2 19 118 69 162 6.99e-20 86.3
MsG0780040919.01.T01 MTR_1g069805 36.923 130 70 3 19 145 68 188 1.01e-19 84.0
MsG0780040919.01.T01 MTR_4g052620 40.769 130 70 5 19 146 67 191 1.02e-19 83.6
MsG0780040919.01.T01 MTR_1g090723 39.000 100 54 2 19 118 69 161 2.26e-19 84.7
MsG0780040919.01.T01 MTR_1g090723 39.000 100 54 2 19 118 69 161 2.65e-19 84.7
MsG0780040919.01.T01 MTR_7g097090 42.553 94 46 1 19 112 68 153 2.87e-19 82.8
MsG0780040919.01.T01 MTR_7g011120 46.078 102 48 3 19 115 66 165 3.90e-19 82.8
MsG0780040919.01.T01 MTR_3g064580 42.268 97 51 2 19 115 66 157 4.50e-19 84.0
MsG0780040919.01.T01 MTR_5g076850 43.299 97 49 3 19 115 66 156 5.57e-19 83.6
MsG0780040919.01.T01 MTR_4g075980 42.574 101 48 2 19 118 73 164 5.97e-19 82.0
MsG0780040919.01.T01 MTR_3g096140 34.266 143 71 5 19 149 67 198 1.59e-18 80.9
MsG0780040919.01.T01 MTR_4g134460 44.444 99 48 2 19 117 112 203 2.90e-18 81.3
MsG0780040919.01.T01 MTR_3g093050 39.850 133 70 4 19 151 82 204 2.92e-18 81.6
MsG0780040919.01.T01 MTR_4g098630 37.415 147 76 5 19 156 66 205 3.24e-18 80.5
MsG0780040919.01.T01 MTR_3g096140 34.266 143 71 5 19 149 67 198 3.88e-18 80.5
MsG0780040919.01.T01 MTR_3g096140 34.266 143 71 5 19 149 46 177 3.92e-18 80.5
MsG0780040919.01.T01 MTR_3g093050 39.850 133 70 4 19 151 82 204 4.45e-18 81.3
MsG0780040919.01.T01 MTR_2g064090 44.330 97 49 2 19 115 66 157 4.70e-18 80.1
MsG0780040919.01.T01 MTR_5g069030 38.129 139 74 4 19 157 85 211 5.69e-18 80.9
MsG0780040919.01.T01 MTR_8g063550 38.776 98 53 3 25 121 72 163 8.14e-18 80.1
MsG0780040919.01.T01 MTR_8g063550 37.500 104 58 3 19 121 66 163 9.70e-18 79.7
MsG0780040919.01.T01 MTR_8g063550 38.776 98 53 3 25 121 72 163 1.17e-17 79.0
MsG0780040919.01.T01 MTR_2g086880 37.313 134 64 4 19 145 77 197 2.87e-17 78.6
MsG0780040919.01.T01 MTR_2g086880 37.313 134 64 4 19 145 77 197 4.26e-17 78.2
MsG0780040919.01.T01 MTR_8g093580 34.559 136 67 7 25 145 72 200 5.69e-17 77.8
MsG0780040919.01.T01 MTR_1g090720 40.952 105 56 3 19 119 102 204 3.63e-16 75.5
MsG0780040919.01.T01 MTR_7g105170 39.796 98 57 2 19 115 68 164 4.00e-16 73.9
MsG0780040919.01.T01 MTR_3g098810 43.564 101 53 2 19 115 70 170 8.48e-16 72.8
MsG0780040919.01.T01 MTR_5g014300 39.216 102 50 2 19 115 66 160 1.03e-15 73.6
MsG0780040919.01.T01 MTR_1g097300 44.000 75 40 1 19 93 79 151 1.76e-15 73.6
MsG0780040919.01.T01 MTR_2g086690 42.574 101 54 4 19 118 68 165 6.03e-15 70.5
MsG0780040919.01.T01 MTR_3g093040 34.586 133 70 3 19 151 168 283 7.29e-15 71.2
MsG0780040919.01.T01 MTR_7g070150 52.830 53 18 2 60 112 9 54 1.08e-13 63.9
MsG0780040919.01.T01 MTR_3g098810 51.389 72 33 1 19 88 70 141 6.12e-13 63.9
MsG0780040919.01.T01 MTR_8g023860 37.234 94 49 3 19 112 73 156 6.79e-12 63.2
MsG0780040919.01.T01 MTR_4g094302 38.384 99 57 2 34 130 76 172 8.80e-12 61.2
MsG0780040919.01.T01 MTR_8g023840 37.500 96 46 3 19 112 72 155 3.26e-11 61.2
MsG0780040919.01.T01 MTR_8g023900 36.735 98 52 3 19 116 254 341 4.61e-11 60.8
MsG0780040919.01.T01 MTR_8g023930 37.113 97 51 3 19 115 85 171 5.59e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040919.01.T01 AT1G69490 62.745 102 36 1 19 120 67 166 1.27e-39 135
MsG0780040919.01.T01 AT1G61110 54.386 114 43 2 19 124 74 186 6.43e-35 125
MsG0780040919.01.T01 AT3G15510 51.724 116 49 1 19 127 75 190 2.39e-34 124
MsG0780040919.01.T01 AT3G04070 50.000 128 54 3 19 136 68 195 3.60e-33 120
MsG0780040919.01.T01 AT1G01720 57.426 101 38 2 19 118 65 161 4.30e-32 116
MsG0780040919.01.T01 AT1G77450 54.545 110 43 3 19 125 68 173 7.61e-32 115
MsG0780040919.01.T01 AT3G04070 46.528 144 51 4 19 136 68 211 1.36e-31 117
MsG0780040919.01.T01 AT5G08790 56.436 101 40 2 19 118 65 162 1.85e-31 115
MsG0780040919.01.T01 AT5G63790 54.455 101 42 2 19 118 108 205 2.20e-31 115
MsG0780040919.01.T01 AT5G63790 54.455 101 42 2 19 118 118 215 2.36e-31 115
MsG0780040919.01.T01 AT4G27410 56.190 105 39 4 19 122 72 170 2.50e-30 112
MsG0780040919.01.T01 AT4G27410 56.190 105 39 4 19 122 89 187 4.03e-30 112
MsG0780040919.01.T01 AT1G52890 52.778 108 45 2 19 126 72 173 6.48e-30 111
MsG0780040919.01.T01 AT3G15500 56.000 100 38 2 19 118 72 165 1.21e-29 110
MsG0780040919.01.T01 AT1G52880 51.376 109 47 2 19 121 75 183 4.55e-28 107
MsG0780040919.01.T01 AT3G12977 49.020 102 46 3 15 115 18 114 4.04e-26 99.8
MsG0780040919.01.T01 AT1G76420 45.614 114 56 3 19 131 79 187 4.71e-26 101
MsG0780040919.01.T01 AT3G12977 49.020 102 46 3 15 115 71 167 2.24e-25 99.0
MsG0780040919.01.T01 AT2G24430 50.515 97 43 2 19 115 74 165 5.98e-25 98.6
MsG0780040919.01.T01 AT2G24430 50.515 97 43 2 19 115 74 165 5.98e-25 98.6
MsG0780040919.01.T01 AT5G13180 52.128 94 40 1 19 112 69 157 8.54e-25 97.1
MsG0780040919.01.T01 AT1G56010 50.000 102 47 3 15 115 6 104 1.39e-24 96.7
MsG0780040919.01.T01 AT1G56010 50.000 102 47 3 15 115 73 171 3.32e-24 96.7
MsG0780040919.01.T01 AT4G10350 45.669 127 61 3 19 145 23 141 5.70e-24 95.5
MsG0780040919.01.T01 AT5G39610 48.624 109 45 4 13 115 67 170 7.56e-24 95.1
MsG0780040919.01.T01 AT3G04060 45.528 123 62 5 19 140 78 196 1.27e-23 95.5
MsG0780040919.01.T01 AT5G07680 50.505 99 45 3 19 117 61 155 1.29e-23 95.1
MsG0780040919.01.T01 AT5G07680 50.505 99 45 3 19 117 75 169 1.36e-23 95.1
MsG0780040919.01.T01 AT4G10350 45.669 127 61 3 19 145 70 188 1.39e-23 95.5
MsG0780040919.01.T01 AT3G15170 52.525 99 45 2 19 117 78 174 1.50e-23 94.7
MsG0780040919.01.T01 AT5G61430 51.546 97 43 3 19 115 11 103 1.60e-23 94.0
MsG0780040919.01.T01 AT1G79580 50.515 97 40 2 19 115 78 166 2.89e-23 94.7
MsG0780040919.01.T01 AT1G79580 50.515 97 40 2 19 115 78 166 2.89e-23 94.7
MsG0780040919.01.T01 AT1G79580 50.515 97 40 2 19 115 78 166 2.89e-23 94.7
MsG0780040919.01.T01 AT1G79580 50.515 97 40 2 19 115 78 166 2.89e-23 94.7
MsG0780040919.01.T01 AT1G79580 50.515 97 40 2 19 115 78 166 2.89e-23 94.7
MsG0780040919.01.T01 AT5G18270 52.577 97 43 3 19 115 79 172 3.42e-23 94.4
MsG0780040919.01.T01 AT5G18270 52.577 97 43 3 19 115 79 172 3.53e-23 94.4
MsG0780040919.01.T01 AT3G18400 49.485 97 42 2 19 115 63 152 3.65e-23 94.0
MsG0780040919.01.T01 AT1G32770 48.544 103 45 3 19 115 77 177 3.75e-23 94.4
MsG0780040919.01.T01 AT5G61430 51.546 97 43 3 19 115 74 166 3.96e-23 94.0
MsG0780040919.01.T01 AT1G26870 42.478 113 44 2 19 118 74 178 5.52e-23 94.7
MsG0780040919.01.T01 AT5G53950 49.020 102 42 2 19 116 75 170 7.65e-23 93.6
MsG0780040919.01.T01 AT2G33480 48.148 108 46 4 17 122 11 110 1.00e-22 90.5
MsG0780040919.01.T01 AT2G46770 48.113 106 44 4 19 115 77 180 1.04e-22 93.2
MsG0780040919.01.T01 AT1G71930 42.453 106 53 2 10 115 61 158 1.71e-22 92.0
MsG0780040919.01.T01 AT1G71930 42.453 106 53 2 10 115 61 158 1.71e-22 92.0
MsG0780040919.01.T01 AT5G39820 37.415 147 64 5 19 137 78 224 1.93e-22 92.0
MsG0780040919.01.T01 AT4G36160 44.444 108 52 2 8 115 60 159 3.12e-22 92.0
MsG0780040919.01.T01 AT4G36160 44.444 108 52 2 8 115 60 159 3.12e-22 92.0
MsG0780040919.01.T01 AT4G36160 44.444 108 52 2 8 115 64 163 3.36e-22 92.0
MsG0780040919.01.T01 AT1G12260 47.423 97 43 2 19 115 68 156 3.37e-22 91.7
MsG0780040919.01.T01 AT1G62700 44.000 125 49 5 19 131 68 183 3.74e-22 92.0
MsG0780040919.01.T01 AT1G62700 44.000 125 49 5 19 131 68 183 3.74e-22 92.0
MsG0780040919.01.T01 AT1G12260 47.423 97 43 2 19 115 68 156 4.56e-22 91.7
MsG0780040919.01.T01 AT3G12910 39.669 121 64 3 19 130 80 200 7.42e-22 90.1
MsG0780040919.01.T01 AT2G33480 50.000 98 39 4 17 112 68 157 7.67e-22 89.4
MsG0780040919.01.T01 AT5G62380 46.392 97 44 2 19 115 68 156 8.14e-22 90.5
MsG0780040919.01.T01 AT5G62380 46.392 97 44 2 19 115 68 156 8.14e-22 90.5
MsG0780040919.01.T01 AT2G33480 48.980 98 38 3 17 112 68 155 8.24e-22 89.4
MsG0780040919.01.T01 AT3G61910 48.113 106 44 4 19 115 72 175 8.92e-22 90.5
MsG0780040919.01.T01 AT2G43000 41.414 99 53 2 23 121 2 95 1.33e-21 87.4
MsG0780040919.01.T01 AT2G18060 36.000 150 81 4 8 154 59 196 1.47e-21 90.1
MsG0780040919.01.T01 AT2G18060 36.000 150 81 4 8 154 59 196 1.47e-21 90.1
MsG0780040919.01.T01 AT1G33280 49.485 97 40 2 19 115 69 156 1.71e-21 89.4
MsG0780040919.01.T01 AT2G43000 40.777 103 56 2 19 121 76 173 2.17e-21 88.6
MsG0780040919.01.T01 AT3G10500 46.809 94 44 2 25 118 75 162 2.21e-21 90.5
MsG0780040919.01.T01 AT3G17730 43.434 99 50 3 19 117 66 158 1.13e-20 85.9
MsG0780040919.01.T01 AT5G46590 50.000 98 43 3 19 115 66 158 2.12e-20 85.9
MsG0780040919.01.T01 AT3G29035 50.000 94 43 3 19 112 82 171 9.56e-20 84.7
MsG0780040919.01.T01 AT5G66300 33.974 156 89 5 8 157 62 209 1.84e-19 83.6
MsG0780040919.01.T01 AT1G65910 43.299 97 49 2 19 115 66 156 2.01e-19 85.1
MsG0780040919.01.T01 AT5G04410 43.617 94 47 2 25 118 75 162 3.26e-19 84.3
MsG0780040919.01.T01 AT3G10480 43.689 103 51 3 19 119 120 217 3.64e-19 84.3
MsG0780040919.01.T01 AT3G10480 43.689 103 51 3 19 119 87 184 3.86e-19 84.0
MsG0780040919.01.T01 AT4G35580 40.323 124 61 3 19 135 69 186 6.87e-19 83.6
MsG0780040919.01.T01 AT4G35580 40.323 124 61 3 19 135 69 186 7.08e-19 83.6
MsG0780040919.01.T01 AT1G33060 35.821 134 78 3 19 150 84 211 8.35e-19 83.2
MsG0780040919.01.T01 AT5G09330 33.803 142 82 5 11 146 56 191 8.37e-19 83.2
MsG0780040919.01.T01 AT5G09330 33.803 142 82 5 11 146 56 191 8.37e-19 83.2
MsG0780040919.01.T01 AT5G09330 33.803 142 82 5 11 146 56 191 8.37e-19 83.2
MsG0780040919.01.T01 AT5G09330 33.803 142 82 5 11 146 56 191 8.37e-19 83.2
MsG0780040919.01.T01 AT5G09330 33.803 142 82 5 11 146 56 191 8.37e-19 83.2
MsG0780040919.01.T01 AT1G33060 35.821 134 78 3 19 150 84 211 8.84e-19 83.2
MsG0780040919.01.T01 AT3G10480 44.660 103 49 4 19 119 87 183 9.55e-19 82.8
MsG0780040919.01.T01 AT3G10490 42.718 103 52 3 19 119 87 184 1.79e-18 80.1
MsG0780040919.01.T01 AT5G46590 49.383 81 40 1 19 99 66 145 2.46e-18 80.5
MsG0780040919.01.T01 AT5G22380 40.777 103 58 2 19 121 69 168 3.06e-18 79.3
MsG0780040919.01.T01 AT4G28530 42.268 97 48 1 19 115 84 172 3.09e-18 80.9
MsG0780040919.01.T01 AT4G17980 42.268 97 54 1 19 115 66 160 3.12e-18 79.7
MsG0780040919.01.T01 AT4G17980 42.268 97 54 1 19 115 66 160 3.59e-18 80.1
MsG0780040919.01.T01 AT3G10490 42.718 103 52 3 19 119 87 184 5.12e-18 80.9
MsG0780040919.01.T01 AT4G35580 40.323 124 61 3 19 135 69 186 5.97e-18 80.9
MsG0780040919.01.T01 AT2G02450 42.424 99 50 2 19 117 109 200 7.73e-18 80.1
MsG0780040919.01.T01 AT2G02450 42.424 99 50 2 19 117 109 200 8.11e-18 80.1
MsG0780040919.01.T01 AT5G17260 44.898 98 49 3 19 116 66 158 9.52e-18 80.1
MsG0780040919.01.T01 AT3G03200 42.857 98 51 2 19 116 66 158 9.66e-18 80.1
MsG0780040919.01.T01 AT1G32510 42.718 103 49 3 19 115 66 164 1.01e-17 78.6
MsG0780040919.01.T01 AT2G17040 42.574 101 48 3 19 118 64 155 3.42e-17 77.0
MsG0780040919.01.T01 AT3G44350 39.048 105 58 3 18 121 67 166 3.78e-17 76.6
MsG0780040919.01.T01 AT3G44290 42.708 96 42 3 19 114 73 155 7.22e-17 75.5
MsG0780040919.01.T01 AT2G18060 36.975 119 60 4 39 154 2 108 7.60e-17 76.3
MsG0780040919.01.T01 AT3G10490 45.455 88 41 3 34 119 2 84 7.86e-17 77.0
MsG0780040919.01.T01 AT3G10490 45.455 88 41 3 34 119 2 84 7.86e-17 77.0
MsG0780040919.01.T01 AT5G24590 44.898 98 49 3 18 115 72 164 8.16e-17 77.4
MsG0780040919.01.T01 AT1G32870 40.952 105 57 3 14 118 100 199 9.80e-17 77.4
MsG0780040919.01.T01 AT1G32870 40.952 105 57 3 14 118 64 163 1.05e-16 77.0
MsG0780040919.01.T01 AT1G32870 40.952 105 57 3 14 118 64 163 1.24e-16 77.0
MsG0780040919.01.T01 AT3G49530 43.956 91 46 2 25 115 79 164 1.39e-16 76.6
MsG0780040919.01.T01 AT2G27300 29.630 162 81 4 19 160 73 221 1.52e-16 75.9
MsG0780040919.01.T01 AT3G44290 42.708 96 42 3 19 114 73 155 1.61e-16 75.9
MsG0780040919.01.T01 AT3G49530 43.956 91 46 2 25 115 79 164 1.72e-16 76.6
MsG0780040919.01.T01 AT5G22290 37.008 127 58 3 19 135 80 194 2.51e-16 75.5
MsG0780040919.01.T01 AT3G44350 43.243 74 41 1 18 91 67 139 2.56e-15 70.1
MsG0780040919.01.T01 AT1G34180 41.333 75 42 1 19 93 88 160 2.95e-15 72.8
MsG0780040919.01.T01 AT1G34180 41.333 75 42 1 19 93 76 148 2.99e-15 72.8
MsG0780040919.01.T01 AT1G34180 41.333 75 42 1 19 93 88 160 3.65e-15 72.8
MsG0780040919.01.T01 AT1G34180 41.333 75 42 1 19 93 76 148 3.66e-15 72.8
MsG0780040919.01.T01 AT1G34190 41.333 75 42 1 19 93 76 148 7.79e-15 71.6
MsG0780040919.01.T01 AT1G54330 42.857 98 45 3 19 115 66 153 1.08e-14 70.5
MsG0780040919.01.T01 AT5G64060 33.981 103 61 3 19 120 66 162 8.89e-14 68.6
MsG0780040919.01.T01 AT5G22290 38.318 107 44 3 39 135 1 95 3.30e-13 65.9
MsG0780040919.01.T01 AT4G01520 33.043 115 64 4 35 148 82 184 8.07e-12 62.4
MsG0780040919.01.T01 AT4G01550 52.727 55 25 1 35 88 81 135 1.28e-11 62.4
MsG0780040919.01.T01 AT4G01540 33.043 115 64 4 35 148 82 184 1.46e-11 62.4
MsG0780040919.01.T01 AT4G01540 33.043 115 64 4 35 148 82 184 1.52e-11 62.0
MsG0780040919.01.T01 AT4G01540 33.043 115 64 4 35 148 82 184 1.72e-11 62.0
MsG0780040919.01.T01 AT4G01540 33.043 115 64 4 35 148 82 184 1.83e-11 62.0
MsG0780040919.01.T01 AT5G64530 35.433 127 60 4 14 130 55 169 2.08e-11 60.1
MsG0780040919.01.T01 AT5G04395 43.662 71 39 1 19 88 99 169 7.70e-11 58.5

Find 40 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATGTTACCTTATATTT+TGG 0.117587 7:-84249652 MsG0780040919.01.T01:CDS
AATCTTCCCAACTGCTTCTT+GGG 0.270345 7:+84249768 None:intergenic
GAATCTTCCCAACTGCTTCT+TGG 0.275408 7:+84249767 None:intergenic
GAAAGCTCTTGTGTTCTATA+AGG 0.276233 7:-84250217 MsG0780040919.01.T01:CDS
GAGCAGCTGGTGTAGGTTAT+TGG 0.281575 7:-84250302 MsG0780040919.01.T01:CDS
TACATAGTTTGGACTGGTTC+AGG 0.295163 7:+84249686 None:intergenic
CTCTATTAGGCCTCAATCCT+TGG 0.302634 7:+84250322 None:intergenic
TTGGGATACTTTCTGTCCCT+TGG 0.346792 7:+84250341 None:intergenic
CTCTTAGAAGCCAAAATATA+AGG 0.363775 7:+84249642 None:intergenic
TTAACAGGCAAGGCTTTGTT+TGG 0.387591 7:-84250389 MsG0780040919.01.T01:CDS
CCTACACCAGCTGCTCTATT+AGG 0.409247 7:+84250309 None:intergenic
TCTCATAGAGCCACTATGAT+TGG 0.425837 7:+84250119 None:intergenic
CTTTGTTTGGCGAGGAAGAA+TGG 0.442307 7:-84250376 MsG0780040919.01.T01:CDS
GTAGGTTATTGGAAAGCAAC+TGG 0.460130 7:-84250291 MsG0780040919.01.T01:CDS
AAAGCTCTTGTGTTCTATAA+GGG 0.461663 7:-84250216 MsG0780040919.01.T01:CDS
AACCCACATGAAGTAAGAAT+AGG 0.478829 7:+84250258 None:intergenic
TTTGCTTCAGCTGGATGAGT+GGG 0.481009 7:-84249822 MsG0780040919.01.T01:intron
TCTATTAGGCCTCAATCCTT+GGG 0.485048 7:+84250323 None:intergenic
AAACCTATTCTTACTTCATG+TGG 0.485318 7:-84250261 MsG0780040919.01.T01:CDS
GAGGTCATACCAATGGAATT+AGG 0.485329 7:+84249612 None:intergenic
TCATGTGGGTTGAAAAGCAT+TGG 0.491457 7:-84250246 MsG0780040919.01.T01:CDS
TTGAGGCCTAATAGAGCAGC+TGG 0.514886 7:-84250315 MsG0780040919.01.T01:CDS
GCCAAAATATAAGGTAACAT+TGG 0.517221 7:+84249651 None:intergenic
AACCTATTCTTACTTCATGT+GGG 0.525385 7:-84250260 MsG0780040919.01.T01:CDS
GGGCAGCCCAAGAAGCAGTT+GGG 0.538362 7:-84249774 MsG0780040919.01.T01:CDS
ATGGTATTTCTTTACTCCAA+GGG 0.547047 7:-84250357 MsG0780040919.01.T01:CDS
ATCTCAAATTCCAATCATAG+TGG 0.551979 7:-84250129 MsG0780040919.01.T01:CDS
AGTGCTCTGCCTAATTCCAT+TGG 0.553997 7:-84249621 MsG0780040919.01.T01:CDS
TGGGCAGCCCAAGAAGCAGT+TGG 0.555345 7:-84249775 MsG0780040919.01.T01:CDS
GGTTCAGGATTAGAGTTCAC+AGG 0.560631 7:+84249701 None:intergenic
AGAAAGTATCCCAAGGATTG+AGG 0.567748 7:-84250332 MsG0780040919.01.T01:CDS
TATAAGGGACGTCCACCAAA+GGG 0.568110 7:-84250201 MsG0780040919.01.T01:CDS
AGTGGATCATGCATGAGTAT+AGG 0.571374 7:-84250167 MsG0780040919.01.T01:CDS
CCTAATAGAGCAGCTGGTGT+AGG 0.572729 7:-84250309 MsG0780040919.01.T01:CDS
AATGGTATTTCTTTACTCCA+AGG 0.574944 7:-84250358 MsG0780040919.01.T01:CDS
ATTGTCTGAGGTCATACCAA+TGG 0.597069 7:+84249605 None:intergenic
CTATAAGGGACGTCCACCAA+AGG 0.603342 7:-84250202 MsG0780040919.01.T01:CDS
AGGCAAGGCTTTGTTTGGCG+AGG 0.637204 7:-84250384 MsG0780040919.01.T01:CDS
CAAAGGGATCTAAAACTGAG+TGG 0.678896 7:-84250185 MsG0780040919.01.T01:CDS
AAGGGACAGAAAGTATCCCA+AGG 0.683243 7:-84250339 MsG0780040919.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGTTACATTTAATTTCTT+TGG + Chr7:84250025-84250044 None:intergenic 15.0%
!!! ATATTTTGTTGTTTTTAAAC+TGG - Chr7:84250125-84250144 MsG0780040919.01.T01:CDS 15.0%
!!! TATTCATTTTGTACATAGTT+TGG + Chr7:84250349-84250368 None:intergenic 20.0%
! AAGATGAAAAATTGAACTCA+TGG + Chr7:84249939-84249958 None:intergenic 25.0%
! GTACTAAATCTTCAGTTTAA+AGG + Chr7:84250092-84250111 None:intergenic 25.0%
!! GGTATGTTAATATGAAGTTT+TGG - Chr7:84250146-84250165 MsG0780040919.01.T01:CDS 25.0%
!! TCCAATGTTACCTTATATTT+TGG - Chr7:84250369-84250388 MsG0780040919.01.T01:CDS 25.0%
AAACCTATTCTTACTTCATG+TGG - Chr7:84249760-84249779 MsG0780040919.01.T01:CDS 30.0%
AAAGCTCTTGTGTTCTATAA+GGG - Chr7:84249805-84249824 MsG0780040919.01.T01:CDS 30.0%
AACCTATTCTTACTTCATGT+GGG - Chr7:84249761-84249780 MsG0780040919.01.T01:CDS 30.0%
AATGGTATTTCTTTACTCCA+AGG - Chr7:84249663-84249682 MsG0780040919.01.T01:CDS 30.0%
ATCTCAAATTCCAATCATAG+TGG - Chr7:84249892-84249911 MsG0780040919.01.T01:intron 30.0%
ATGGTATTTCTTTACTCCAA+GGG - Chr7:84249664-84249683 MsG0780040919.01.T01:CDS 30.0%
CTCTTAGAAGCCAAAATATA+AGG + Chr7:84250382-84250401 None:intergenic 30.0%
GCCAAAATATAAGGTAACAT+TGG + Chr7:84250373-84250392 None:intergenic 30.0%
! ATTTTGTACATAGTTTGGAC+TGG + Chr7:84250344-84250363 None:intergenic 30.0%
!! TGGAAGCTTTTCATTTTAAC+AGG - Chr7:84249617-84249636 MsG0780040919.01.T01:CDS 30.0%
AACCCACATGAAGTAAGAAT+AGG + Chr7:84249766-84249785 None:intergenic 35.0%
GAAAGCTCTTGTGTTCTATA+AGG - Chr7:84249804-84249823 MsG0780040919.01.T01:CDS 35.0%
!! GCTTTTCATTTTAACAGGCA+AGG - Chr7:84249622-84249641 MsG0780040919.01.T01:CDS 35.0%
AATCTTCCCAACTGCTTCTT+GGG + Chr7:84250256-84250275 None:intergenic 40.0%
AGTGGATCATGCATGAGTAT+AGG - Chr7:84249854-84249873 MsG0780040919.01.T01:intron 40.0%
ATGCCGTGTTCGACAAAAAA+TGG - Chr7:84250226-84250245 MsG0780040919.01.T01:CDS 40.0%
GTAGGTTATTGGAAAGCAAC+TGG - Chr7:84249730-84249749 MsG0780040919.01.T01:CDS 40.0%
TCTATTAGGCCTCAATCCTT+GGG + Chr7:84249701-84249720 None:intergenic 40.0%
TCTCATAGAGCCACTATGAT+TGG + Chr7:84249905-84249924 None:intergenic 40.0%
TGCCGTGTTCGACAAAAAAT+GGG - Chr7:84250227-84250246 MsG0780040919.01.T01:CDS 40.0%
TGTCTGTGTTAGTGCTTCAT+AGG + Chr7:84249967-84249986 None:intergenic 40.0%
! CAAAGGGATCTAAAACTGAG+TGG - Chr7:84249836-84249855 MsG0780040919.01.T01:intron 40.0%
! CTTCAGTTTAAAGGTGTGTC+CGG + Chr7:84250083-84250102 None:intergenic 40.0%
! TCATGTGGGTTGAAAAGCAT+TGG - Chr7:84249775-84249794 MsG0780040919.01.T01:CDS 40.0%
! TTTCCTTCTTTTGCTTCAGC+TGG - Chr7:84250190-84250209 MsG0780040919.01.T01:CDS 40.0%
!! AGAAAGTATCCCAAGGATTG+AGG - Chr7:84249689-84249708 MsG0780040919.01.T01:CDS 40.0%
!! TACATAGTTTGGACTGGTTC+AGG + Chr7:84250338-84250357 None:intergenic 40.0%
!! TTAACAGGCAAGGCTTTGTT+TGG - Chr7:84249632-84249651 MsG0780040919.01.T01:CDS 40.0%
!!! CACTCAGTTTTAGATCCCTT+TGG + Chr7:84249838-84249857 None:intergenic 40.0%
!!! TCAGTTTTAGATCCCTTTGG+TGG + Chr7:84249835-84249854 None:intergenic 40.0%
!!! TGCCCATTTTTTGTCGAACA+CGG + Chr7:84250232-84250251 None:intergenic 40.0%
AGTGCTCTGCCTAATTCCAT+TGG - Chr7:84250400-84250419 MsG0780040919.01.T01:CDS 45.0%
CATCCAGCTGAAGCAAAAGA+AGG + Chr7:84250196-84250215 None:intergenic 45.0%
CTCTATTAGGCCTCAATCCT+TGG + Chr7:84249702-84249721 None:intergenic 45.0%
GAATCTTCCCAACTGCTTCT+TGG + Chr7:84250257-84250276 None:intergenic 45.0%
GGTTCAGGATTAGAGTTCAC+AGG + Chr7:84250323-84250342 None:intergenic 45.0%
TATAAGGGACGTCCACCAAA+GGG - Chr7:84249820-84249839 MsG0780040919.01.T01:intron 45.0%
TTGGGATACTTTCTGTCCCT+TGG + Chr7:84249683-84249702 None:intergenic 45.0%
TTTGCTTCAGCTGGATGAGT+GGG - Chr7:84250199-84250218 MsG0780040919.01.T01:CDS 45.0%
! CATAGTGGCTCTATGAGAGT+AGG - Chr7:84249907-84249926 MsG0780040919.01.T01:intron 45.0%
! CTTTGTTTGGCGAGGAAGAA+TGG - Chr7:84249645-84249664 MsG0780040919.01.T01:CDS 45.0%
! TTTTGCTTCAGCTGGATGAG+TGG - Chr7:84250198-84250217 MsG0780040919.01.T01:CDS 45.0%
!! AAGGGACAGAAAGTATCCCA+AGG - Chr7:84249682-84249701 MsG0780040919.01.T01:CDS 45.0%
CACTGACACACGTTGAACAC+CGG - Chr7:84250061-84250080 MsG0780040919.01.T01:intron 50.0%
CCTAATAGAGCAGCTGGTGT+AGG - Chr7:84249712-84249731 MsG0780040919.01.T01:CDS 50.0%
CCTACACCAGCTGCTCTATT+AGG + Chr7:84249715-84249734 None:intergenic 50.0%
CTATAAGGGACGTCCACCAA+AGG - Chr7:84249819-84249838 MsG0780040919.01.T01:intron 50.0%
GAGCAGCTGGTGTAGGTTAT+TGG - Chr7:84249719-84249738 MsG0780040919.01.T01:CDS 50.0%
TTGAGGCCTAATAGAGCAGC+TGG - Chr7:84249706-84249725 MsG0780040919.01.T01:CDS 50.0%
!! AGGCAAGGCTTTGTTTGGCG+AGG - Chr7:84249637-84249656 MsG0780040919.01.T01:CDS 55.0%
GGGCAGCCCAAGAAGCAGTT+GGG - Chr7:84250247-84250266 MsG0780040919.01.T01:CDS 60.0%
TGGGCAGCCCAAGAAGCAGT+TGG - Chr7:84250246-84250265 MsG0780040919.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 84249616 84250427 84249616 ID=MsG0780040919.01;Name=MsG0780040919.01
Chr7 mRNA 84249616 84250427 84249616 ID=MsG0780040919.01.T01;Parent=MsG0780040919.01;Name=MsG0780040919.01.T01;_AED=0.29;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|175
Chr7 exon 84250119 84250427 84250119 ID=MsG0780040919.01.T01:exon:40682;Parent=MsG0780040919.01.T01
Chr7 exon 84249616 84249834 84249616 ID=MsG0780040919.01.T01:exon:40681;Parent=MsG0780040919.01.T01
Chr7 CDS 84250119 84250427 84250119 ID=MsG0780040919.01.T01:cds;Parent=MsG0780040919.01.T01
Chr7 CDS 84249616 84249834 84249616 ID=MsG0780040919.01.T01:cds;Parent=MsG0780040919.01.T01
Gene Sequence

>MsG0780040919.01.T01

ATGGAAGCTTTTCATTTTAACAGGCAAGGCTTTGTTTGGCGAGGAAGAATGGTATTTCTTTACTCCAAGGGACAGAAAGTATCCCAAGGATTGAGGCCTAATAGAGCAGCTGGTGTAGGTTATTGGAAAGCAACTGGAACTGACAAACCTATTCTTACTTCATGTGGGTTGAAAAGCATTGGAGTGAAGAAAGCTCTTGTGTTCTATAAGGGACGTCCACCAAAGGGATCTAAAACTGAGTGGATCATGCATGAGTATAGGTTGCATGACTCGATGATCTCAAATTCCAATCATAGTGGCTCTATGAGACTGGATGAGTGGGTGCTATGCCGTGTTCGACAAAAAATGGGCAGCCCAAGAAGCAGTTGGGAAGATTCAAATGAACTTAGCTATGAATCAACTAGTCAATTTCAGCACATGCCTGTGAACTCTAATCCTGAACCAGTCCAAACTATGTACAAAATGAATATCCAATGTTACCTTATATTTTGGCTTCTAAGAGTGCTCTGCCTAATTCCATTGGTATGA
Protein sequence

>MsG0780040919.01.T01

MEAFHFNRQGFVWRGRMVFLYSKGQKVSQGLRPNRAAGVGYWKATGTDKPILTSCGLKSIGVKKALVFYKGRPPKGSKTEWIMHEYRLHDSMISNSNHSGSMRLDEWVLCRVRQKMGSPRSSWEDSNELSYESTSQFQHMPVNSNPEPVQTMYKMNIQCYLIFWLLRVLCLIPLV*