Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041169.01.T04 | XP_013450173.1 | 95.714 | 70 | 1 | 1 | 1 | 68 | 129 | 198 | 9.50E-40 | 139 |
| MsG0780041169.01.T03 | XP_013450173.1 | 98.485 | 198 | 1 | 1 | 1 | 196 | 1 | 198 | 1.66E-141 | 402 |
| MsG0780041169.01.T02 | XP_013450173.1 | 93.434 | 198 | 1 | 2 | 1 | 186 | 1 | 198 | 3.02E-130 | 374 |
| MsG0780041169.01.T01 | XP_013450173.1 | 83.838 | 198 | 2 | 3 | 1 | 168 | 1 | 198 | 1.20E-109 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041169.01.T01 | Q3EAL1 | 52.381 | 147 | 46 | 4 | 1 | 143 | 1 | 127 | 1.14E-38 | 132 |
| MsG0780041169.01.T02 | Q3EAL1 | 43.976 | 166 | 49 | 4 | 1 | 161 | 1 | 127 | 9.08E-34 | 120 |
| MsG0780041169.01.T03 | Q3EAL1 | 78.125 | 64 | 14 | 0 | 108 | 171 | 64 | 127 | 6.84E-32 | 115 |
| MsG0780041169.01.T04 | Q3EAL1 | 81.395 | 43 | 8 | 0 | 1 | 43 | 85 | 127 | 1.31E-20 | 82 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041169.01.T01 | G7ZUW3 | 83.838 | 198 | 2 | 3 | 1 | 168 | 1 | 198 | 5.75e-110 | 320 |
| MsG0780041169.01.T02 | G7ZUW3 | 93.434 | 198 | 1 | 2 | 1 | 186 | 1 | 198 | 1.44e-130 | 374 |
| MsG0780041169.01.T03 | G7ZUW3 | 98.485 | 198 | 1 | 1 | 1 | 196 | 1 | 198 | 7.95e-142 | 402 |
| MsG0780041169.01.T04 | G7ZUW3 | 95.714 | 70 | 1 | 1 | 1 | 68 | 129 | 198 | 4.54e-40 | 139 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0780041169.01.T02 | TF | OFP |
| MsG0780041169.01.T01 | TF | OFP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041169.01.T04 | MTR_7g105790 | 95.714 | 70 | 1 | 1 | 1 | 68 | 129 | 198 | 1.15e-43 | 139 |
| MsG0780041169.01.T04 | MTR_0907s0020 | 72.131 | 61 | 16 | 1 | 1 | 60 | 121 | 181 | 3.68e-27 | 97.1 |
| MsG0780041169.01.T04 | MTR_4g052040 | 52.542 | 59 | 21 | 1 | 1 | 52 | 118 | 176 | 3.81e-15 | 65.9 |
| MsG0780041169.01.T04 | MTR_5g079710 | 65.217 | 46 | 16 | 0 | 1 | 46 | 110 | 155 | 5.20e-14 | 64.3 |
| MsG0780041169.01.T04 | MTR_8g103520 | 47.826 | 46 | 24 | 0 | 1 | 46 | 243 | 288 | 3.10e-11 | 57.0 |
| MsG0780041169.01.T03 | MTR_7g105790 | 98.485 | 198 | 1 | 1 | 1 | 196 | 1 | 198 | 2.02e-145 | 402 |
| MsG0780041169.01.T03 | MTR_0907s0020 | 56.771 | 192 | 68 | 3 | 1 | 188 | 1 | 181 | 2.03e-64 | 197 |
| MsG0780041169.01.T03 | MTR_4g052040 | 37.234 | 188 | 98 | 5 | 1 | 180 | 1 | 176 | 7.70e-29 | 106 |
| MsG0780041169.01.T03 | MTR_4g052060 | 35.227 | 176 | 89 | 3 | 1 | 172 | 1 | 155 | 1.78e-24 | 95.1 |
| MsG0780041169.01.T03 | MTR_5g079710 | 36.875 | 160 | 74 | 4 | 18 | 174 | 20 | 155 | 2.25e-24 | 96.7 |
| MsG0780041169.01.T03 | MTR_8g103520 | 47.297 | 74 | 39 | 0 | 101 | 174 | 215 | 288 | 1.79e-17 | 79.0 |
| MsG0780041169.01.T03 | MTR_5g075210 | 47.826 | 69 | 36 | 0 | 110 | 178 | 280 | 348 | 1.73e-16 | 76.6 |
| MsG0780041169.01.T03 | MTR_4g028930 | 42.029 | 69 | 40 | 0 | 103 | 171 | 307 | 375 | 3.28e-14 | 70.5 |
| MsG0780041169.01.T03 | MTR_7g072875 | 40.000 | 70 | 42 | 0 | 102 | 171 | 211 | 280 | 5.94e-14 | 68.9 |
| MsG0780041169.01.T03 | MTR_7g072630 | 40.000 | 70 | 42 | 0 | 102 | 171 | 273 | 342 | 9.05e-14 | 68.9 |
| MsG0780041169.01.T03 | MTR_8g087530 | 42.647 | 68 | 39 | 0 | 108 | 175 | 256 | 323 | 2.26e-12 | 65.1 |
| MsG0780041169.01.T03 | MTR_3g111780 | 52.778 | 72 | 34 | 0 | 110 | 181 | 198 | 269 | 2.33e-12 | 64.3 |
| MsG0780041169.01.T03 | MTR_2g018030 | 42.857 | 63 | 36 | 0 | 113 | 175 | 280 | 342 | 3.89e-12 | 64.3 |
| MsG0780041169.01.T02 | MTR_7g105790 | 93.434 | 198 | 1 | 2 | 1 | 186 | 1 | 198 | 3.66e-134 | 374 |
| MsG0780041169.01.T02 | MTR_0907s0020 | 60.989 | 182 | 66 | 3 | 1 | 178 | 1 | 181 | 1.10e-65 | 199 |
| MsG0780041169.01.T02 | MTR_4g052040 | 38.764 | 178 | 99 | 4 | 1 | 170 | 1 | 176 | 7.76e-30 | 108 |
| MsG0780041169.01.T02 | MTR_4g052060 | 37.349 | 166 | 89 | 3 | 1 | 162 | 1 | 155 | 3.68e-26 | 99.0 |
| MsG0780041169.01.T02 | MTR_5g079710 | 41.892 | 148 | 73 | 5 | 18 | 164 | 20 | 155 | 3.98e-24 | 95.5 |
| MsG0780041169.01.T02 | MTR_8g103520 | 50.769 | 65 | 32 | 0 | 100 | 164 | 224 | 288 | 2.47e-17 | 78.2 |
| MsG0780041169.01.T02 | MTR_5g075210 | 47.826 | 69 | 36 | 0 | 100 | 168 | 280 | 348 | 1.49e-16 | 76.6 |
| MsG0780041169.01.T02 | MTR_4g028930 | 42.029 | 69 | 40 | 0 | 93 | 161 | 307 | 375 | 1.42e-14 | 71.2 |
| MsG0780041169.01.T02 | MTR_7g072875 | 40.909 | 66 | 39 | 0 | 96 | 161 | 215 | 280 | 1.53e-13 | 67.4 |
| MsG0780041169.01.T02 | MTR_7g072630 | 40.909 | 66 | 39 | 0 | 96 | 161 | 277 | 342 | 2.20e-13 | 67.4 |
| MsG0780041169.01.T02 | MTR_3g111780 | 51.899 | 79 | 37 | 1 | 100 | 177 | 198 | 276 | 2.03e-12 | 64.3 |
| MsG0780041169.01.T02 | MTR_8g087530 | 42.647 | 68 | 39 | 0 | 98 | 165 | 256 | 323 | 2.35e-12 | 64.7 |
| MsG0780041169.01.T02 | MTR_2g018030 | 42.857 | 63 | 36 | 0 | 103 | 165 | 280 | 342 | 3.81e-12 | 63.9 |
| MsG0780041169.01.T01 | MTR_7g105790 | 83.838 | 198 | 2 | 3 | 1 | 168 | 1 | 198 | 1.46e-113 | 320 |
| MsG0780041169.01.T01 | MTR_0907s0020 | 58.011 | 181 | 55 | 3 | 1 | 160 | 1 | 181 | 5.79e-61 | 187 |
| MsG0780041169.01.T01 | MTR_4g052040 | 36.723 | 177 | 86 | 4 | 1 | 152 | 1 | 176 | 2.21e-28 | 103 |
| MsG0780041169.01.T01 | MTR_5g079710 | 41.379 | 145 | 60 | 4 | 18 | 146 | 20 | 155 | 4.78e-26 | 100 |
| MsG0780041169.01.T01 | MTR_4g052060 | 36.646 | 161 | 79 | 2 | 1 | 144 | 1 | 155 | 1.60e-24 | 94.4 |
| MsG0780041169.01.T01 | MTR_8g103520 | 50.769 | 65 | 32 | 0 | 82 | 146 | 224 | 288 | 2.38e-17 | 77.4 |
| MsG0780041169.01.T01 | MTR_5g075210 | 46.154 | 78 | 41 | 1 | 74 | 150 | 271 | 348 | 3.77e-17 | 77.4 |
| MsG0780041169.01.T01 | MTR_4g028930 | 41.538 | 65 | 38 | 0 | 79 | 143 | 311 | 375 | 4.93e-14 | 68.9 |
| MsG0780041169.01.T01 | MTR_7g072875 | 40.000 | 65 | 39 | 0 | 79 | 143 | 216 | 280 | 2.49e-13 | 66.6 |
| MsG0780041169.01.T01 | MTR_7g072630 | 40.000 | 65 | 39 | 0 | 79 | 143 | 278 | 342 | 4.15e-13 | 66.2 |
| MsG0780041169.01.T01 | MTR_3g111780 | 52.778 | 72 | 34 | 0 | 82 | 153 | 198 | 269 | 9.10e-13 | 64.7 |
| MsG0780041169.01.T01 | MTR_2g018030 | 42.857 | 63 | 36 | 0 | 85 | 147 | 280 | 342 | 3.10e-12 | 63.9 |
| MsG0780041169.01.T01 | MTR_8g087530 | 43.548 | 62 | 35 | 0 | 82 | 143 | 258 | 319 | 7.40e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041169.01.T04 | AT2G36026 | 82.609 | 46 | 8 | 0 | 1 | 46 | 105 | 150 | 2.25e-24 | 90.1 |
| MsG0780041169.01.T04 | AT3G52525 | 81.395 | 43 | 8 | 0 | 1 | 43 | 85 | 127 | 1.33e-21 | 82.0 |
| MsG0780041169.01.T04 | AT2G18500 | 53.488 | 43 | 20 | 0 | 1 | 43 | 245 | 287 | 1.24e-11 | 58.2 |
| MsG0780041169.01.T03 | AT2G36026 | 47.024 | 168 | 60 | 4 | 8 | 174 | 11 | 150 | 5.17e-35 | 122 |
| MsG0780041169.01.T03 | AT3G52525 | 78.125 | 64 | 14 | 0 | 108 | 171 | 64 | 127 | 6.97e-33 | 115 |
| MsG0780041169.01.T03 | AT2G18500 | 56.923 | 65 | 28 | 0 | 110 | 174 | 226 | 290 | 1.13e-20 | 87.8 |
| MsG0780041169.01.T03 | AT5G19650 | 52.381 | 63 | 30 | 0 | 109 | 171 | 153 | 215 | 4.65e-18 | 79.3 |
| MsG0780041169.01.T03 | AT5G58360 | 38.462 | 78 | 46 | 1 | 96 | 171 | 208 | 285 | 9.20e-14 | 68.6 |
| MsG0780041169.01.T03 | AT2G30400 | 48.387 | 62 | 32 | 0 | 110 | 171 | 252 | 313 | 1.43e-13 | 68.2 |
| MsG0780041169.01.T03 | AT1G06920 | 43.077 | 65 | 37 | 0 | 110 | 174 | 243 | 307 | 1.75e-13 | 68.2 |
| MsG0780041169.01.T03 | AT5G01840 | 44.118 | 68 | 38 | 0 | 114 | 181 | 202 | 269 | 1.36e-12 | 65.1 |
| MsG0780041169.01.T03 | AT4G18830 | 44.118 | 68 | 38 | 0 | 105 | 172 | 277 | 344 | 3.15e-12 | 64.7 |
| MsG0780041169.01.T03 | AT5G22240 | 43.077 | 65 | 37 | 0 | 110 | 174 | 96 | 160 | 6.98e-12 | 62.0 |
| MsG0780041169.01.T02 | AT2G36026 | 47.799 | 159 | 62 | 4 | 8 | 164 | 11 | 150 | 3.58e-36 | 124 |
| MsG0780041169.01.T02 | AT3G52525 | 43.976 | 166 | 49 | 4 | 1 | 161 | 1 | 127 | 9.26e-35 | 120 |
| MsG0780041169.01.T02 | AT2G18500 | 56.923 | 65 | 28 | 0 | 100 | 164 | 226 | 290 | 8.22e-21 | 87.8 |
| MsG0780041169.01.T02 | AT5G19650 | 52.381 | 63 | 30 | 0 | 99 | 161 | 153 | 215 | 3.46e-18 | 79.3 |
| MsG0780041169.01.T02 | AT1G06920 | 39.474 | 76 | 46 | 0 | 89 | 164 | 232 | 307 | 8.68e-14 | 68.6 |
| MsG0780041169.01.T02 | AT2G30400 | 48.387 | 62 | 32 | 0 | 100 | 161 | 252 | 313 | 1.30e-13 | 68.2 |
| MsG0780041169.01.T02 | AT5G58360 | 43.548 | 62 | 35 | 0 | 100 | 161 | 224 | 285 | 4.31e-13 | 66.6 |
| MsG0780041169.01.T02 | AT5G01840 | 44.118 | 68 | 38 | 0 | 104 | 171 | 202 | 269 | 1.16e-12 | 65.1 |
| MsG0780041169.01.T02 | AT4G18830 | 44.286 | 70 | 39 | 0 | 93 | 162 | 275 | 344 | 1.54e-12 | 65.1 |
| MsG0780041169.01.T02 | AT5G22240 | 44.444 | 63 | 35 | 0 | 100 | 162 | 96 | 158 | 5.46e-12 | 62.0 |
| MsG0780041169.01.T01 | AT3G52525 | 52.381 | 147 | 46 | 4 | 1 | 143 | 1 | 127 | 1.16e-39 | 132 |
| MsG0780041169.01.T01 | AT2G36026 | 52.143 | 140 | 66 | 1 | 8 | 146 | 11 | 150 | 6.73e-39 | 131 |
| MsG0780041169.01.T01 | AT2G18500 | 56.923 | 65 | 28 | 0 | 82 | 146 | 226 | 290 | 5.81e-21 | 87.8 |
| MsG0780041169.01.T01 | AT5G19650 | 52.381 | 63 | 30 | 0 | 81 | 143 | 153 | 215 | 3.94e-18 | 78.6 |
| MsG0780041169.01.T01 | AT1G06920 | 40.000 | 80 | 48 | 0 | 67 | 146 | 228 | 307 | 1.84e-14 | 69.7 |
| MsG0780041169.01.T01 | AT2G30400 | 48.387 | 62 | 32 | 0 | 82 | 143 | 252 | 313 | 9.46e-14 | 67.8 |
| MsG0780041169.01.T01 | AT5G58360 | 39.726 | 73 | 44 | 0 | 71 | 143 | 213 | 285 | 1.39e-13 | 67.4 |
| MsG0780041169.01.T01 | AT5G01840 | 48.276 | 58 | 30 | 0 | 86 | 143 | 202 | 259 | 8.88e-13 | 64.7 |
| MsG0780041169.01.T01 | AT4G18830 | 42.857 | 70 | 40 | 0 | 75 | 144 | 275 | 344 | 1.43e-12 | 64.7 |
| MsG0780041169.01.T01 | AT5G22240 | 44.444 | 63 | 35 | 0 | 82 | 144 | 96 | 158 | 4.13e-12 | 62.0 |
Find 43 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATCCTTATCTTGATTTC+AGG | 0.232091 | 7:-87546498 | MsG0780041169.01.T03:CDS |
| TAAGTGGGGTTCTTGGATTT+TGG | 0.239783 | 7:+87546751 | None:intergenic |
| TTCCATGCTTCAAATGATAT+TGG | 0.263152 | 7:-87546473 | MsG0780041169.01.T03:CDS |
| CAAAGGAGAGTAGGTGGTTT+AGG | 0.273409 | 7:-87546562 | MsG0780041169.01.T03:CDS |
| TGTTTGTGGTTGTAGTGTTT+GGG | 0.298136 | 7:+87546650 | None:intergenic |
| GTGTTTGTGGTTGTAGTGTT+TGG | 0.310441 | 7:+87546649 | None:intergenic |
| AACAGTTCAAAAGCTCTCTA+AGG | 0.371057 | 7:+87546425 | None:intergenic |
| CTAAACCACCTACTCTCCTT+TGG | 0.387710 | 7:+87546563 | None:intergenic |
| TTAACGTTGACGTGGCTTAC+GGG | 0.391307 | 7:+87546282 | None:intergenic |
| AAATGTGGTGGCAGTGTTTG+TGG | 0.395839 | 7:+87546636 | None:intergenic |
| GTTAACGTTGACGTGGCTTA+CGG | 0.405421 | 7:+87546281 | None:intergenic |
| GGTACGAGATGTATGCAAAC+TGG | 0.419878 | 7:+87546309 | None:intergenic |
| GTAGGTGGTTTAGGAAGAGC+TGG | 0.439315 | 7:-87546553 | MsG0780041169.01.T03:CDS |
| TTAGGAAGAGCTGGAGGAGA+AGG | 0.440207 | 7:-87546544 | MsG0780041169.01.T03:CDS |
| GTATGCAAACTGGGTGAACT+AGG | 0.462797 | 7:+87546319 | None:intergenic |
| ACAATAACACCATGATGATA+AGG | 0.476139 | 7:+87546385 | None:intergenic |
| AATAACCAGTACTCTTCATC+TGG | 0.479074 | 7:-87546709 | MsG0780041169.01.T03:CDS |
| GGAATGGAGTTTCAACTATG+AGG | 0.482299 | 7:-87546342 | MsG0780041169.01.T03:CDS |
| GTTGACGTGGCTTACGGGTA+CGG | 0.498372 | 7:+87546287 | None:intergenic |
| TGGAGGAGAAGGTGTGGCGG+TGG | 0.505343 | 7:-87546533 | MsG0780041169.01.T03:CDS |
| CTCCAATATCATTTGAAGCA+TGG | 0.514713 | 7:+87546471 | None:intergenic |
| AGTACTCTTCATCTGGTCCT+TGG | 0.522312 | 7:-87546702 | MsG0780041169.01.T03:CDS |
| CTGAATGCACCTTATCATCA+TGG | 0.534801 | 7:-87546394 | MsG0780041169.01.T03:CDS |
| TCATATTTGTCTTCAGTCCA+AGG | 0.540198 | 7:+87546685 | None:intergenic |
| TTGACGTGGCTTACGGGTAC+GGG | 0.548544 | 7:+87546288 | None:intergenic |
| AAGGACCAGATGAAGAGTAC+TGG | 0.567259 | 7:+87546704 | None:intergenic |
| GAATGCCTGAAATCAAGATA+AGG | 0.568676 | 7:+87546493 | None:intergenic |
| TGATTCAGATGCTTATGCAA+AGG | 0.569548 | 7:-87546587 | MsG0780041169.01.T03:CDS |
| CTTTATAGTTAACGTTGACG+TGG | 0.575487 | 7:+87546274 | None:intergenic |
| AACACTGTGTCGGTGAAACT+AGG | 0.582378 | 7:-87546823 | MsG0780041169.01.T03:CDS |
| GTTTGTGGTTGTAGTGTTTG+GGG | 0.590441 | 7:+87546651 | None:intergenic |
| GCAAAGGACCAAAGGAGAGT+AGG | 0.596139 | 7:-87546571 | MsG0780041169.01.T03:CDS |
| ATGCTTATGCAAAGGACCAA+AGG | 0.599434 | 7:-87546579 | MsG0780041169.01.T03:CDS |
| GTACGAGATGTATGCAAACT+GGG | 0.606095 | 7:+87546310 | None:intergenic |
| TAGGTTGTGGAAGCTGCAGA+AGG | 0.607735 | 7:-87546804 | MsG0780041169.01.T03:CDS |
| AAGAGCTGGAGGAGAAGGTG+TGG | 0.611252 | 7:-87546539 | MsG0780041169.01.T03:CDS |
| GGTGGTTTAGGAAGAGCTGG+AGG | 0.612792 | 7:-87546550 | MsG0780041169.01.T03:CDS |
| GTGTCGGTGAAACTAGGTTG+TGG | 0.621800 | 7:-87546817 | MsG0780041169.01.T03:CDS |
| GCTTCTTCTGAACACTGTGT+CGG | 0.624101 | 7:-87546833 | MsG0780041169.01.T03:CDS |
| GGAATAGTATGGTGAAAATG+TGG | 0.635363 | 7:+87546621 | None:intergenic |
| AGCTGGAGGAGAAGGTGTGG+CGG | 0.646351 | 7:-87546536 | MsG0780041169.01.T03:CDS |
| AAGGACCAAAGGAGAGTAGG+TGG | 0.647195 | 7:-87546568 | MsG0780041169.01.T03:CDS |
| ATAGTATGGTGAAAATGTGG+TGG | 0.720920 | 7:+87546624 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTAAAGTTTGTGTTTT+TGG | + | Chr7:87546410-87546429 | None:intergenic | 20.0% |
| ! | ATCTGAATCAGAAAAATTTG+AGG | + | Chr7:87546538-87546557 | None:intergenic | 25.0% |
| ! | GAAAAATTTGAGGAATAGTA+TGG | + | Chr7:87546528-87546547 | None:intergenic | 25.0% |
| AAGATCCTTATCTTGATTTC+AGG | - | Chr7:87546637-87546656 | MsG0780041169.01.T03:CDS | 30.0% | |
| ACAATAACACCATGATGATA+AGG | + | Chr7:87546753-87546772 | None:intergenic | 30.0% | |
| TTCCATGCTTCAAATGATAT+TGG | - | Chr7:87546662-87546681 | MsG0780041169.01.T03:CDS | 30.0% | |
| ! | TTAGAGCTTTTACTGAGATT+TGG | - | Chr7:87546772-87546791 | MsG0780041169.01.T03:CDS | 30.0% |
| !!! | AAGTTTGTGTTTTTGGTAAG+TGG | + | Chr7:87546403-87546422 | None:intergenic | 30.0% |
| !!! | AGTTTGTGTTTTTGGTAAGT+GGG | + | Chr7:87546402-87546421 | None:intergenic | 30.0% |
| AACAGTTCAAAAGCTCTCTA+AGG | + | Chr7:87546713-87546732 | None:intergenic | 35.0% | |
| AATAACCAGTACTCTTCATC+TGG | - | Chr7:87546426-87546445 | MsG0780041169.01.T03:CDS | 35.0% | |
| ATAGTATGGTGAAAATGTGG+TGG | + | Chr7:87546514-87546533 | None:intergenic | 35.0% | |
| GAATGCCTGAAATCAAGATA+AGG | + | Chr7:87546645-87546664 | None:intergenic | 35.0% | |
| GGAATAGTATGGTGAAAATG+TGG | + | Chr7:87546517-87546536 | None:intergenic | 35.0% | |
| TCATATTTGTCTTCAGTCCA+AGG | + | Chr7:87546453-87546472 | None:intergenic | 35.0% | |
| TGATTCAGATGCTTATGCAA+AGG | - | Chr7:87546548-87546567 | MsG0780041169.01.T03:CDS | 35.0% | |
| TGTTTGTGGTTGTAGTGTTT+GGG | + | Chr7:87546488-87546507 | None:intergenic | 35.0% | |
| ! | CTCCAATATCATTTGAAGCA+TGG | + | Chr7:87546667-87546686 | None:intergenic | 35.0% |
| ! | GCTTTTACTGAGATTTGGAA+TGG | - | Chr7:87546777-87546796 | MsG0780041169.01.T03:CDS | 35.0% |
| !!! | GGTTCTTGGATTTTGGTTTT+GGG | + | Chr7:87546380-87546399 | None:intergenic | 35.0% |
| !!! | GTTTGTGTTTTTGGTAAGTG+GGG | + | Chr7:87546401-87546420 | None:intergenic | 35.0% |
| ATGCTTATGCAAAGGACCAA+AGG | - | Chr7:87546556-87546575 | MsG0780041169.01.T03:CDS | 40.0% | |
| CTGAATGCACCTTATCATCA+TGG | - | Chr7:87546741-87546760 | MsG0780041169.01.T03:CDS | 40.0% | |
| GGAATGGAGTTTCAACTATG+AGG | - | Chr7:87546793-87546812 | MsG0780041169.01.T03:CDS | 40.0% | |
| GTACGAGATGTATGCAAACT+GGG | + | Chr7:87546828-87546847 | None:intergenic | 40.0% | |
| GTGTTTGTGGTTGTAGTGTT+TGG | + | Chr7:87546489-87546508 | None:intergenic | 40.0% | |
| GTTTGTGGTTGTAGTGTTTG+GGG | + | Chr7:87546487-87546506 | None:intergenic | 40.0% | |
| ! | TAAGTGGGGTTCTTGGATTT+TGG | + | Chr7:87546387-87546406 | None:intergenic | 40.0% |
| !! | TTTTTGGTAAGTGGGGTTCT+TGG | + | Chr7:87546394-87546413 | None:intergenic | 40.0% |
| !!! | GGGTTCTTGGATTTTGGTTT+TGG | + | Chr7:87546381-87546400 | None:intergenic | 40.0% |
| AAATGTGGTGGCAGTGTTTG+TGG | + | Chr7:87546502-87546521 | None:intergenic | 45.0% | |
| AGTACTCTTCATCTGGTCCT+TGG | - | Chr7:87546433-87546452 | MsG0780041169.01.T03:CDS | 45.0% | |
| CAAAGGAGAGTAGGTGGTTT+AGG | - | Chr7:87546573-87546592 | MsG0780041169.01.T03:CDS | 45.0% | |
| CTAAACCACCTACTCTCCTT+TGG | + | Chr7:87546575-87546594 | None:intergenic | 45.0% | |
| GCTTCTTCTGAACACTGTGT+CGG | - | Chr7:87546302-87546321 | MsG0780041169.01.T03:CDS | 45.0% | |
| GGTACGAGATGTATGCAAAC+TGG | + | Chr7:87546829-87546848 | None:intergenic | 45.0% | |
| GTATGCAAACTGGGTGAACT+AGG | + | Chr7:87546819-87546838 | None:intergenic | 45.0% | |
| TTAACGTTGACGTGGCTTAC+GGG | + | Chr7:87546856-87546875 | None:intergenic | 45.0% | |
| ! | AACACTGTGTCGGTGAAACT+AGG | - | Chr7:87546312-87546331 | MsG0780041169.01.T03:CDS | 45.0% |
| ! | AAGGACCAGATGAAGAGTAC+TGG | + | Chr7:87546434-87546453 | None:intergenic | 45.0% |
| AAGGACCAAAGGAGAGTAGG+TGG | - | Chr7:87546567-87546586 | MsG0780041169.01.T03:CDS | 50.0% | |
| GCAAAGGACCAAAGGAGAGT+AGG | - | Chr7:87546564-87546583 | MsG0780041169.01.T03:CDS | 50.0% | |
| GTAGGTGGTTTAGGAAGAGC+TGG | - | Chr7:87546582-87546601 | MsG0780041169.01.T03:CDS | 50.0% | |
| TAGGTTGTGGAAGCTGCAGA+AGG | - | Chr7:87546331-87546350 | MsG0780041169.01.T03:CDS | 50.0% | |
| TTAGGAAGAGCTGGAGGAGA+AGG | - | Chr7:87546591-87546610 | MsG0780041169.01.T03:CDS | 50.0% | |
| ! | GTGTCGGTGAAACTAGGTTG+TGG | - | Chr7:87546318-87546337 | MsG0780041169.01.T03:CDS | 50.0% |
| AAGAGCTGGAGGAGAAGGTG+TGG | - | Chr7:87546596-87546615 | MsG0780041169.01.T03:CDS | 55.0% | |
| GGTGGTTTAGGAAGAGCTGG+AGG | - | Chr7:87546585-87546604 | MsG0780041169.01.T03:CDS | 55.0% | |
| GTTGACGTGGCTTACGGGTA+CGG | + | Chr7:87546851-87546870 | None:intergenic | 55.0% | |
| TTGACGTGGCTTACGGGTAC+GGG | + | Chr7:87546850-87546869 | None:intergenic | 55.0% | |
| ! | AGCTGGAGGAGAAGGTGTGG+CGG | - | Chr7:87546599-87546618 | MsG0780041169.01.T03:CDS | 60.0% |
| ! | TGGAGGAGAAGGTGTGGCGG+TGG | - | Chr7:87546602-87546621 | MsG0780041169.01.T03:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 87546282 | 87546875 | 87546282 | ID=MsG0780041169.01;Name=MsG0780041169.01 |
| Chr7 | mRNA | 87546282 | 87546875 | 87546282 | ID=MsG0780041169.01.T01;Parent=MsG0780041169.01;Name=MsG0780041169.01.T01;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0|0|3|0|169 |
| Chr7 | exon | 87546282 | 87546550 | 87546282 | ID=MsG0780041169.01.T01:exon:52225;Parent=MsG0780041169.01.T01 |
| Chr7 | exon | 87546593 | 87546694 | 87546593 | ID=MsG0780041169.01.T01:exon:52224;Parent=MsG0780041169.01.T01 |
| Chr7 | exon | 87546737 | 87546875 | 87546737 | ID=MsG0780041169.01.T01:exon:52223;Parent=MsG0780041169.01.T01 |
| Chr7 | CDS | 87546737 | 87546875 | 87546737 | ID=MsG0780041169.01.T01:cds;Parent=MsG0780041169.01.T01 |
| Chr7 | CDS | 87546593 | 87546694 | 87546593 | ID=MsG0780041169.01.T01:cds;Parent=MsG0780041169.01.T01 |
| Chr7 | CDS | 87546282 | 87546550 | 87546282 | ID=MsG0780041169.01.T01:cds;Parent=MsG0780041169.01.T01 |
| Chr7 | mRNA | 87546282 | 87546875 | 87546282 | ID=MsG0780041169.01.T02;Parent=MsG0780041169.01;Name=MsG0780041169.01.T02;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0|0|2|0|187 |
| Chr7 | exon | 87546282 | 87546562 | 87546282 | ID=MsG0780041169.01.T02:exon:52227;Parent=MsG0780041169.01.T02 |
| Chr7 | exon | 87546593 | 87546875 | 87546593 | ID=MsG0780041169.01.T02:exon:52226;Parent=MsG0780041169.01.T02 |
| Chr7 | CDS | 87546593 | 87546875 | 87546593 | ID=MsG0780041169.01.T02:cds;Parent=MsG0780041169.01.T02 |
| Chr7 | CDS | 87546282 | 87546562 | 87546282 | ID=MsG0780041169.01.T02:cds;Parent=MsG0780041169.01.T02 |
| Chr7 | mRNA | 87546282 | 87546875 | 87546282 | ID=MsG0780041169.01.T03;Parent=MsG0780041169.01;Name=MsG0780041169.01.T03;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|197 |
| Chr7 | exon | 87546282 | 87546875 | 87546282 | ID=MsG0780041169.01.T03:exon:52228;Parent=MsG0780041169.01.T03 |
| Chr7 | CDS | 87546282 | 87546875 | 87546282 | ID=MsG0780041169.01.T03:cds;Parent=MsG0780041169.01.T03 |
| Chr7 | mRNA | 87546282 | 87546491 | 87546282 | ID=MsG0780041169.01.T04;Parent=MsG0780041169.01;Name=MsG0780041169.01.T04;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|0|1|0|69 |
| Chr7 | exon | 87546282 | 87546491 | 87546282 | ID=MsG0780041169.01.T04:exon:52229;Parent=MsG0780041169.01.T04 |
| Chr7 | CDS | 87546282 | 87546491 | 87546282 | ID=MsG0780041169.01.T04:cds;Parent=MsG0780041169.01.T04 |
| Gene Sequence |
| Protein sequence |
