AlfalfaGEDB | MsG0780041732.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041732.01

KEGG: -
GO: GO:0000160 GO:0003677 GO:0003700 GO:0007165
PFAM: PF00072 PF00249

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041732.01.T01	RHN49520.1	91.096	292	24	2	1	291	1	291	0	518

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041732.01.T01	A2X1N2	56.87	262	111	1	3	262	23	284	7.92E-97	300

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041732.01.T01	A0A396H8C6	91.096	292	24	2	1	291	1	291	0.0	518

TFs/TRs:

Gene ID	Type	Classification
MsG0780041732.01.T01	TF	GARP-ARR-B

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041732.01.T01	MTR_7g117705	67.732	313	76	4	1	291	1	310	3.41e-136	393
MsG0780041732.01.T01	MTR_1g013170	76.834	259	60	0	1	259	1	259	1.88e-128	375
MsG0780041732.01.T01	MTR_1g013180	63.385	325	85	3	1	291	152	476	4.91e-122	364
MsG0780041732.01.T01	MTR_3g106220	55.063	316	112	4	2	288	5	319	5.62e-101	309
MsG0780041732.01.T01	MTR_2g450070	51.786	280	122	5	3	272	16	292	1.43e-82	261
MsG0780041732.01.T01	MTR_2g450070	51.786	280	122	5	3	272	16	292	2.06e-82	262
MsG0780041732.01.T01	MTR_2g034960	47.222	288	142	4	1	286	25	304	3.09e-76	244
MsG0780041732.01.T01	MTR_4g131580	53.252	246	112	2	5	250	17	259	7.22e-76	243
MsG0780041732.01.T01	MTR_1g032570	49.064	267	119	4	4	260	10	269	1.40e-75	242
MsG0780041732.01.T01	MTR_4g121020	48.507	268	132	2	2	267	28	291	1.66e-75	243
MsG0780041732.01.T01	MTR_4g121020	48.507	268	132	2	2	267	28	291	1.70e-75	243
MsG0780041732.01.T01	MTR_4g131600	51.417	247	115	2	1	247	16	257	1.55e-73	236
MsG0780041732.01.T01	MTR_4g131570	50.988	253	114	3	3	250	15	262	2.96e-72	233
MsG0780041732.01.T01	MTR_3g086100	48.302	265	120	3	4	255	12	272	1.57e-71	230
MsG0780041732.01.T01	MTR_8g079940	49.814	269	110	5	3	255	23	282	3.76e-70	226
MsG0780041732.01.T01	MTR_1g013160	78.378	148	32	0	67	214	1	148	1.36e-69	213
MsG0780041732.01.T01	MTR_3g102590	47.368	266	84	3	2	263	5	218	3.53e-65	204
MsG0780041732.01.T01	MTR_3g102590	48.333	240	71	2	2	240	5	192	2.75e-60	190
MsG0780041732.01.T01	MTR_4g021760	39.431	246	121	5	5	250	11	228	5.13e-51	170
MsG0780041732.01.T01	MTR_1g032570	47.826	207	91	4	64	260	1	200	1.22e-50	175
MsG0780041732.01.T01	MTR_4g021790	39.357	249	123	5	2	250	7	227	7.22e-50	166
MsG0780041732.01.T01	MTR_3g102600	63.846	130	47	0	1	130	4	133	5.61e-48	159
MsG0780041732.01.T01	MTR_3g102600	63.846	130	47	0	1	130	4	133	9.94e-48	159
MsG0780041732.01.T01	MTR_4g021855	35.662	272	146	5	2	273	7	249	1.94e-47	160
MsG0780041732.01.T01	MTR_3g086100	46.829	205	92	3	64	255	1	201	3.44e-47	165
MsG0780041732.01.T01	MTR_4g021845	37.238	239	122	4	2	240	7	217	5.81e-47	157
MsG0780041732.01.T01	MTR_6g045327	35.510	245	128	5	4	247	13	228	3.71e-39	141
MsG0780041732.01.T01	MTR_0450s0040	35.000	240	135	3	9	248	8	226	7.87e-39	139
MsG0780041732.01.T01	MTR_7g026400	35.060	251	136	5	32	278	14	241	4.20e-35	133
MsG0780041732.01.T01	MTR_4g121020	40.323	186	105	2	84	267	6	187	5.21e-33	127
MsG0780041732.01.T01	MTR_3g102600	65.882	85	29	0	47	131	1	85	1.96e-32	117
MsG0780041732.01.T01	MTR_3g102600	65.882	85	29	0	47	131	1	85	2.83e-32	117
MsG0780041732.01.T01	MTR_5g055260	32.258	248	113	6	2	249	7	199	9.32e-32	119
MsG0780041732.01.T01	MTR_8g105600	32.967	273	160	6	5	271	9	264	2.67e-30	120
MsG0780041732.01.T01	MTR_8g032710	30.315	254	157	7	8	243	20	271	7.31e-28	112
MsG0780041732.01.T01	MTR_6g016850	36.434	129	79	2	1	127	5	132	1.56e-21	89.4
MsG0780041732.01.T01	MTR_4g023980	30.675	163	86	3	52	214	36	171	5.49e-21	88.2
MsG0780041732.01.T01	MTR_3g092780	27.749	191	115	3	9	177	56	245	2.33e-20	91.3
MsG0780041732.01.T01	MTR_3g092780	27.749	191	115	3	9	177	56	245	2.40e-20	91.3
MsG0780041732.01.T01	MTR_8g093040	35.484	124	80	0	4	127	13	136	1.42e-19	86.7
MsG0780041732.01.T01	MTR_3g037390	29.891	184	118	2	6	178	21	204	1.63e-19	88.6
MsG0780041732.01.T01	MTR_3g092780	31.169	154	98	3	9	155	56	208	2.49e-19	88.2
MsG0780041732.01.T01	MTR_3g092780	31.169	154	98	3	9	155	56	208	2.58e-19	88.2
MsG0780041732.01.T01	MTR_8g024260	30.636	173	106	3	6	164	33	205	5.82e-19	87.0
MsG0780041732.01.T01	MTR_1g067110	36.066	122	75	2	9	127	85	206	2.58e-18	85.5
MsG0780041732.01.T01	MTR_1g067110	36.066	122	75	2	9	127	85	206	2.65e-18	85.5
MsG0780041732.01.T01	MTR_4g061360	35.246	122	76	1	9	127	89	210	2.32e-17	82.4
MsG0780041732.01.T01	MTR_4g108880	32.283	127	83	1	6	129	30	156	2.34e-17	82.4
MsG0780041732.01.T01	MTR_7g118260	33.846	130	77	2	9	132	14	140	1.98e-16	79.7
MsG0780041732.01.T01	MTR_7g118260	33.594	128	76	2	9	130	14	138	6.49e-16	78.2
MsG0780041732.01.T01	MTR_4g064730	46.591	88	45	1	162	247	100	187	5.27e-15	74.3
MsG0780041732.01.T01	MTR_7g115530	64.815	54	18	1	191	243	218	271	9.94e-15	73.6
MsG0780041732.01.T01	MTR_7g115530	64.815	54	18	1	191	243	218	271	1.39e-14	73.2
MsG0780041732.01.T01	MTR_7g115530	64.815	54	18	1	191	243	218	271	1.53e-14	73.9
MsG0780041732.01.T01	MTR_7g115530	64.815	54	18	1	191	243	218	271	2.42e-14	72.8
MsG0780041732.01.T01	MTR_1g080330	58.621	58	23	1	187	243	171	228	3.49e-14	71.6
MsG0780041732.01.T01	MTR_1g080330	58.621	58	23	1	187	243	171	228	3.99e-14	72.4
MsG0780041732.01.T01	MTR_7g089010	53.448	58	27	0	190	247	90	147	2.04e-13	69.7
MsG0780041732.01.T01	MTR_2g027800	51.562	64	30	1	187	249	35	98	2.43e-13	69.3
MsG0780041732.01.T01	MTR_2g027800	46.154	78	40	2	187	262	35	112	3.51e-13	68.9
MsG0780041732.01.T01	MTR_4g106590	32.824	131	75	2	9	126	26	156	5.04e-13	67.4
MsG0780041732.01.T01	MTR_7g115530	63.462	52	18	1	191	241	218	269	7.85e-13	67.8
MsG0780041732.01.T01	MTR_7g098250	55.172	58	25	1	187	243	258	315	9.12e-13	68.6
MsG0780041732.01.T01	MTR_1g053835	51.613	62	29	1	184	244	251	312	1.27e-12	68.2
MsG0780041732.01.T01	MTR_1g090670	52.542	59	27	1	187	244	40	98	2.26e-12	66.6
MsG0780041732.01.T01	MTR_5g027440	42.529	87	39	3	191	266	25	111	2.73e-12	66.2
MsG0780041732.01.T01	MTR_7g115530	62.745	51	18	1	191	240	218	268	4.16e-12	65.9
MsG0780041732.01.T01	MTR_2g023580	41.489	94	53	2	190	282	54	146	8.05e-12	64.3
MsG0780041732.01.T01	MTR_7g093030	57.407	54	22	1	191	243	212	265	1.02e-11	64.7
MsG0780041732.01.T01	MTR_7g093030	57.407	54	22	1	191	243	212	265	1.05e-11	65.1
MsG0780041732.01.T01	MTR_4g078810	36.145	83	43	1	186	268	153	225	1.08e-11	65.1
MsG0780041732.01.T01	MTR_6g032990	50.909	55	26	1	191	244	42	96	1.53e-11	64.7
MsG0780041732.01.T01	MTR_8g086410	54.386	57	25	1	190	245	110	166	1.64e-11	64.7
MsG0780041732.01.T01	MTR_8g086410	54.386	57	25	1	190	245	108	164	1.66e-11	64.7
MsG0780041732.01.T01	MTR_2g090675	36.047	86	45	1	186	271	156	231	1.73e-11	64.7
MsG0780041732.01.T01	MTR_8g038620	29.286	140	79	3	9	128	9	148	1.86e-11	62.0
MsG0780041732.01.T01	MTR_7g069660	52.632	57	26	1	190	245	70	126	2.07e-11	63.9
MsG0780041732.01.T01	MTR_8g086410	43.210	81	45	1	190	269	110	190	2.44e-11	64.3
MsG0780041732.01.T01	MTR_4g081710	47.273	55	28	1	191	244	17	71	2.50e-11	63.9
MsG0780041732.01.T01	MTR_2g086450	50.909	55	26	1	191	244	45	99	2.86e-11	63.9
MsG0780041732.01.T01	MTR_5g014040	50.909	55	27	0	190	244	310	364	3.40e-11	63.9
MsG0780041732.01.T01	MTR_5g014040	32.331	133	84	3	4	134	13	141	4.56e-11	63.5
MsG0780041732.01.T01	MTR_4g098870	50.909	55	27	0	190	244	329	383	3.70e-11	63.9
MsG0780041732.01.T01	MTR_4g098870	50.909	55	27	0	190	244	309	363	3.80e-11	63.9
MsG0780041732.01.T01	MTR_4g098870	50.909	55	27	0	190	244	348	402	3.96e-11	63.9
MsG0780041732.01.T01	MTR_4g098870	50.909	55	27	0	190	244	329	383	4.46e-11	63.5
MsG0780041732.01.T01	MTR_4g098870	50.909	55	27	0	190	244	309	363	4.51e-11	63.5
MsG0780041732.01.T01	MTR_5g014040	32.331	133	84	3	4	134	13	141	5.02e-11	63.5
MsG0780041732.01.T01	MTR_5g041350	47.273	55	28	1	191	244	15	69	6.50e-11	62.8
MsG0780041732.01.T01	MTR_7g088070	40.909	88	47	3	191	273	50	137	7.65e-11	62.0
MsG0780041732.01.T01	MTR_1g053800	50.820	61	29	1	187	246	173	233	7.66e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041732.01.T01	AT4G31920	58.301	259	92	2	3	261	11	253	7.81e-91	280
MsG0780041732.01.T01	AT2G25180	57.088	261	106	3	3	262	11	266	2.78e-88	275
MsG0780041732.01.T01	AT3G16857	46.102	295	116	6	5	267	33	316	1.44e-74	241
MsG0780041732.01.T01	AT3G16857	46.102	295	116	6	5	267	33	316	2.65e-74	241
MsG0780041732.01.T01	AT5G58080	49.104	279	118	4	3	272	12	275	4.69e-71	231
MsG0780041732.01.T01	AT1G67710	50.000	254	114	4	7	253	9	256	2.71e-69	223
MsG0780041732.01.T01	AT2G01760	48.031	254	125	3	1	247	3	256	3.34e-69	219
MsG0780041732.01.T01	AT2G01760	42.662	293	132	5	1	258	3	294	6.45e-63	204
MsG0780041732.01.T01	AT3G16857	45.136	257	98	6	43	267	1	246	1.80e-59	200
MsG0780041732.01.T01	AT5G49240	37.872	235	141	4	8	240	41	272	1.85e-45	155
MsG0780041732.01.T01	AT1G67710	48.731	197	88	4	64	253	1	191	9.29e-45	157
MsG0780041732.01.T01	AT3G62670	38.554	249	124	8	24	260	54	285	1.18e-43	154
MsG0780041732.01.T01	AT2G01760	46.073	191	96	3	64	247	1	191	7.05e-43	149
MsG0780041732.01.T01	AT1G49190	29.808	312	170	6	4	286	29	320	3.12e-38	139
MsG0780041732.01.T01	AT1G67710	42.938	177	88	4	84	253	12	182	3.63e-30	118
MsG0780041732.01.T01	AT5G07210	28.625	269	156	6	9	247	16	278	1.36e-29	118
MsG0780041732.01.T01	AT2G27070	29.749	279	147	7	7	247	14	281	1.79e-28	114
MsG0780041732.01.T01	AT5G07210	27.798	277	156	7	9	247	16	286	5.15e-27	110
MsG0780041732.01.T01	AT1G49190	28.448	232	143	6	4	212	29	260	2.41e-22	97.1
MsG0780041732.01.T01	AT2G46790	37.398	123	72	2	9	127	37	158	9.48e-22	94.7
MsG0780041732.01.T01	AT2G46790	37.398	123	72	2	9	127	37	158	1.07e-21	94.7
MsG0780041732.01.T01	AT5G24470	34.109	129	80	2	6	130	47	174	1.31e-20	92.0
MsG0780041732.01.T01	AT5G61380	34.646	127	80	1	6	129	16	142	1.21e-19	89.4
MsG0780041732.01.T01	AT5G60100	37.705	122	73	1	9	127	64	185	6.07e-19	86.7
MsG0780041732.01.T01	AT5G60100	37.705	122	73	1	9	127	64	185	6.07e-19	86.7
MsG0780041732.01.T01	AT5G60100	37.705	122	73	1	9	127	64	185	6.07e-19	86.7
MsG0780041732.01.T01	AT5G60100	37.705	122	73	1	9	127	64	185	9.00e-19	86.7
MsG0780041732.01.T01	AT5G60100	37.705	122	73	1	9	127	64	185	9.00e-19	86.7
MsG0780041732.01.T01	AT5G60100	37.705	122	73	1	9	127	64	185	9.00e-19	86.7
MsG0780041732.01.T01	AT5G60100	37.705	122	73	1	9	127	64	185	1.47e-18	85.9
MsG0780041732.01.T01	AT5G02810	35.246	122	76	1	9	127	78	199	6.62e-18	84.3
MsG0780041732.01.T01	AT5G59570	47.436	78	41	0	170	247	120	197	1.46e-16	78.6
MsG0780041732.01.T01	AT5G59570	47.436	78	41	0	170	247	120	197	1.46e-16	78.6
MsG0780041732.01.T01	AT3G46640	33.918	171	88	4	101	247	31	200	7.62e-15	73.9
MsG0780041732.01.T01	AT3G46640	33.918	171	88	4	101	247	31	200	8.81e-15	73.9
MsG0780041732.01.T01	AT3G46640	33.918	171	88	4	101	247	31	200	8.81e-15	73.9
MsG0780041732.01.T01	AT2G40970	53.448	58	27	0	190	247	104	161	3.75e-14	70.9
MsG0780041732.01.T01	AT5G44190	44.304	79	34	1	190	268	146	214	4.60e-14	72.0
MsG0780041732.01.T01	AT5G44190	44.304	79	34	1	190	268	146	214	5.31e-14	71.6
MsG0780041732.01.T01	AT3G10760	53.448	58	27	0	190	247	104	161	1.07e-13	70.9
MsG0780041732.01.T01	AT5G05090	53.448	58	27	0	190	247	80	137	1.33e-13	69.7
MsG0780041732.01.T01	AT3G13040	53.846	65	29	1	181	244	231	295	8.42e-13	68.6
MsG0780041732.01.T01	AT3G13040	53.846	65	29	1	181	244	231	295	8.42e-13	68.6
MsG0780041732.01.T01	AT3G13040	53.846	65	29	1	181	244	231	295	8.42e-13	68.6
MsG0780041732.01.T01	AT5G45580	49.254	67	33	1	179	244	11	77	3.03e-12	65.9
MsG0780041732.01.T01	AT5G45580	54.545	55	24	1	191	244	7	61	4.36e-12	65.5
MsG0780041732.01.T01	AT4G13640	41.379	87	48	2	187	270	33	119	5.33e-12	65.5
MsG0780041732.01.T01	AT4G13640	41.379	87	48	2	187	270	33	119	5.46e-12	65.5
MsG0780041732.01.T01	AT1G69580	52.727	55	25	1	191	244	34	88	5.72e-12	65.9
MsG0780041732.01.T01	AT1G69580	52.727	55	25	1	191	244	34	88	5.81e-12	65.9
MsG0780041732.01.T01	AT3G57040	27.684	177	102	4	9	159	9	185	7.95e-12	64.3
MsG0780041732.01.T01	AT3G57040	27.684	177	102	4	9	159	9	185	7.95e-12	64.3
MsG0780041732.01.T01	AT3G24120	40.230	87	49	2	187	270	37	123	1.19e-11	64.3
MsG0780041732.01.T01	AT2G01060	41.000	100	50	4	182	272	4	103	1.20e-11	64.3
MsG0780041732.01.T01	AT3G24120	40.230	87	49	2	187	270	37	123	1.30e-11	64.3
MsG0780041732.01.T01	AT3G04030	50.909	55	26	1	191	244	45	99	1.39e-11	64.7
MsG0780041732.01.T01	AT3G04030	50.909	55	26	1	191	244	45	99	1.55e-11	64.7
MsG0780041732.01.T01	AT2G20570	34.426	122	61	3	150	271	121	223	1.70e-11	64.7
MsG0780041732.01.T01	AT3G12730	45.070	71	37	2	187	255	19	89	2.11e-11	63.2
MsG0780041732.01.T01	AT3G04030	48.148	54	28	0	191	244	45	98	3.48e-11	63.5
MsG0780041732.01.T01	AT5G18240	50.909	55	26	1	191	244	45	99	4.53e-11	63.2
MsG0780041732.01.T01	AT5G18240	50.909	55	26	1	191	244	45	99	4.53e-11	63.2
MsG0780041732.01.T01	AT5G18240	50.909	55	26	1	191	244	45	99	5.11e-11	63.2
MsG0780041732.01.T01	AT5G18240	50.909	55	26	1	191	244	45	99	5.33e-11	63.2
MsG0780041732.01.T01	AT5G18240	50.909	55	26	1	191	244	45	99	5.33e-11	63.2
MsG0780041732.01.T01	AT2G20570	40.789	76	35	1	196	271	174	239	6.25e-11	63.2
MsG0780041732.01.T01	AT5G06800	49.180	61	30	1	185	244	186	246	9.69e-11	61.6

Find 47 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAAACTTGTCTCAAGATTT+TGG	0.111825	7:-94533417	MsG0780041732.01.T01:CDS
CTTGTCGCGGTTAACAAATT+TGG	0.304801	7:-94532225	MsG0780041732.01.T01:CDS
CCATTTCCACTATCAGAATT+AGG	0.317534	7:+94532423	None:intergenic
TGAAAGAGGTGAAGATGATT+TGG	0.332494	7:-94532497	MsG0780041732.01.T01:CDS
ATGAATGATGAGTTTCGAAT+TGG	0.346923	7:-94533467	MsG0780041732.01.T01:CDS
TTCACCTCTTTCAATTGAAC+AGG	0.352913	7:+94532507	None:intergenic
TTTAAGCTTCTTGAGCTTGT+TGG	0.375182	7:-94532716	MsG0780041732.01.T01:CDS
CAACGAAATCGAGGCTTCTT+CGG	0.398280	7:+94532273	None:intergenic
CCTAATTCTGATAGTGGAAA+TGG	0.401332	7:-94532423	MsG0780041732.01.T01:CDS
CCTCCTAGTGTCAATATACA+TGG	0.410772	7:-94531561	MsG0780041732.01.T01:CDS
ATTGCTTTCATAACCAGCTT+AGG	0.420417	7:+94532561	None:intergenic
AGTTGAAAAGTAGTAGTTAT+GGG	0.440897	7:-94531650	MsG0780041732.01.T01:CDS
AAACTTGTGGTGTAAGTCAT+TGG	0.441523	7:+94532248	None:intergenic
TTCAGTGCTATTCGTGCACT+TGG	0.445352	7:+94532809	None:intergenic
CGAGGCTTCTTCGGCGCAGT+TGG	0.453906	7:+94532282	None:intergenic
TGAGCTTGTTGGACTTGAGA+TGG	0.457732	7:-94532705	MsG0780041732.01.T01:CDS
CATTCATCTTATGAAAGATA+CGG	0.458484	7:+94533483	None:intergenic
TATGAACATTACTCATTACT+AGG	0.460796	7:+94532756	None:intergenic
AGCTTAAATCCATCCATGTC+TGG	0.471845	7:+94532731	None:intergenic
AAGTTGAAAAGTAGTAGTTA+TGG	0.482179	7:-94531651	MsG0780041732.01.T01:CDS
TGAAAATGATGATCCTAAGC+TGG	0.496842	7:-94532574	MsG0780041732.01.T01:CDS
ACATGTGGCCAGCCATCTCC+AGG	0.523004	7:-94531888	MsG0780041732.01.T01:intron
ATTCATCTTATGAAAGATAC+GGG	0.525871	7:+94533484	None:intergenic
TTGCATAACTTACTTATGAC+AGG	0.526242	7:+94532677	None:intergenic
TAAGAATGAAGATGATGTTG+AGG	0.533063	7:-94532337	MsG0780041732.01.T01:CDS
GATGTGCCTAATTCTGATAG+TGG	0.537306	7:-94532429	MsG0780041732.01.T01:CDS
CGAAGAAGCCTCGATTTCGT+TGG	0.556982	7:-94532272	MsG0780041732.01.T01:CDS
TATTCGTGCACTTGGAGCAG+TGG	0.566879	7:+94532817	None:intergenic
GTTCATATGCCAGACATGGA+TGG	0.584384	7:-94532740	MsG0780041732.01.T01:CDS
TAGTGTCAATATACATGGGT+TGG	0.589409	7:-94531556	MsG0780041732.01.T01:CDS
GAAACCTGTTCAATTGAAAG+AGG	0.592307	7:-94532511	MsG0780041732.01.T01:CDS
GTTATGAAAGCAATTGATCT+CGG	0.596446	7:-94532552	MsG0780041732.01.T01:CDS
GAGTATGATCATGAAAATGA+TGG	0.597211	7:-94532306	MsG0780041732.01.T01:CDS
TAGCCACCATATTAGCTCGA+TGG	0.616049	7:+94531622	None:intergenic
CGAGCTAATATGGTGGCTAG+TGG	0.620369	7:-94531618	MsG0780041732.01.T01:CDS
AAATCTTACAAAGGAACATG+TGG	0.625593	7:-94531903	MsG0780041732.01.T01:CDS
ATAACTTACTTATGACAGGT+AGG	0.629417	7:+94532681	None:intergenic
CTCCTAGTGTCAATATACAT+GGG	0.630450	7:-94531560	MsG0780041732.01.T01:CDS
CCATGTATATTGACACTAGG+AGG	0.632916	7:+94531561	None:intergenic
GAATGTTGAAAATCTTACAA+AGG	0.637383	7:-94531912	MsG0780041732.01.T01:CDS
ACACCACAAGTTTCTTGTCG+CGG	0.645407	7:-94532238	MsG0780041732.01.T01:CDS
CTCGAAAGGTGTCAATACCA+TGG	0.650196	7:-94533386	MsG0780041732.01.T01:intron
TCATTGGACCAACGAAATCG+AGG	0.660616	7:+94532264	None:intergenic
TAATGTTCATATGCCAGACA+TGG	0.666265	7:-94532744	MsG0780041732.01.T01:CDS
TAACCGCGACAAGAAACTTG+TGG	0.669528	7:+94532235	None:intergenic
AACCCATGTATATTGACACT+AGG	0.674841	7:+94531558	None:intergenic
AAACCATCGAGCTAATATGG+TGG	0.705104	7:-94531625	MsG0780041732.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATTAATATCATTATGAA+AGG	+	Chr7:94532167-94532186	None:intergenic	10.0%
!!	ATTATTAAATTGTAATCATA+AGG	-	Chr7:94531731-94531750	MsG0780041732.01.T01:intron	10.0%
!!	CATAATATTAATATCAAAAT+TGG	+	Chr7:94532950-94532969	None:intergenic	10.0%
!!	TTATTAAATTGTAATCATAA+GGG	-	Chr7:94531732-94531751	MsG0780041732.01.T01:intron	10.0%
!!!	TTTACAAACACTTTAATTTA+GGG	-	Chr7:94533309-94533328	MsG0780041732.01.T01:intron	15.0%
!!!	TTTTACAAACACTTTAATTT+AGG	-	Chr7:94533308-94533327	MsG0780041732.01.T01:intron	15.0%
!!	AATTAGAACGATAATGTTAA+CGG	-	Chr7:94531844-94531863	MsG0780041732.01.T01:intron	20.0%
!!	TTAATTTAGGGAAATTTACT+TGG	-	Chr7:94533321-94533340	MsG0780041732.01.T01:intron	20.0%
!!!	TAATATAATTGATTCGTACA+AGG	+	Chr7:94531922-94531941	None:intergenic	20.0%
!!!	TGTGAACTTATGTTATTTTT+TGG	-	Chr7:94532070-94532089	MsG0780041732.01.T01:intron	20.0%
!	AAGAGATAAAGAAAAATACC+TGG	+	Chr7:94533161-94533180	None:intergenic	25.0%
!	AAGTTGAAAAGTAGTAGTTA+TGG	-	Chr7:94533377-94533396	MsG0780041732.01.T01:intron	25.0%
!	AGCAATAGATAAAAGATTTG+AGG	+	Chr7:94532878-94532897	None:intergenic	25.0%
!	AGTTGAAAAGTAGTAGTTAT+GGG	-	Chr7:94533378-94533397	MsG0780041732.01.T01:intron	25.0%
!	ATGTATCAGTAACATAAGAT+TGG	+	Chr7:94532381-94532400	None:intergenic	25.0%
!	ATTCATCTTATGAAAGATAC+GGG	+	Chr7:94531547-94531566	None:intergenic	25.0%
!	CATTCATCTTATGAAAGATA+CGG	+	Chr7:94531548-94531567	None:intergenic	25.0%
!	GAATGTTGAAAATCTTACAA+AGG	-	Chr7:94533116-94533135	MsG0780041732.01.T01:intron	25.0%
!	GTGTTTGTAAAATGTAAACT+AGG	+	Chr7:94533300-94533319	None:intergenic	25.0%
!	TAAATTGTAATCATAAGGGA+CGG	-	Chr7:94531736-94531755	MsG0780041732.01.T01:intron	25.0%
!	TATGAACATTACTCATTACT+AGG	+	Chr7:94532275-94532294	None:intergenic	25.0%
!	TTGTAAAATGTAAACTAGGT+AGG	+	Chr7:94533296-94533315	None:intergenic	25.0%
!	TTTATCAAAGATGTTTGAGT+AGG	-	Chr7:94532913-94532932	MsG0780041732.01.T01:intron	25.0%
!!	AATCTTTGAGAGAATTTGAT+CGG	+	Chr7:94531999-94532018	None:intergenic	25.0%
!!	ATCAAGTTAAGAATCTTTTG+TGG	+	Chr7:94533096-94533115	None:intergenic	25.0%
!!	TTATCCTTTCTTTTTCTAGA+TGG	+	Chr7:94532674-94532693	None:intergenic	25.0%
!!	TTTGATTCTTTAGATCCTTT+TGG	-	Chr7:94531809-94531828	MsG0780041732.01.T01:intron	25.0%
	AAAGCCATCTAGAAAAAGAA+AGG	-	Chr7:94532667-94532686	MsG0780041732.01.T01:intron	30.0%
	AAATCTTACAAAGGAACATG+TGG	-	Chr7:94533125-94533144	MsG0780041732.01.T01:intron	30.0%
	AAGATACGGGAAAAAATTGA+TGG	+	Chr7:94531534-94531553	None:intergenic	30.0%
	ATAACTTACTTATGACAGGT+AGG	+	Chr7:94532350-94532369	None:intergenic	30.0%
	ATCGAATGAATCCAACAATT+TGG	+	Chr7:94532117-94532136	None:intergenic	30.0%
	ATGAATGATGAGTTTCGAAT+TGG	-	Chr7:94531561-94531580	MsG0780041732.01.T01:CDS	30.0%
	GAGTATGATCATGAAAATGA+TGG	-	Chr7:94532722-94532741	MsG0780041732.01.T01:CDS	30.0%
	GATCAAATTCTCTCAAAGAT+TGG	-	Chr7:94531998-94532017	MsG0780041732.01.T01:intron	30.0%
	GTTATGAAAGCAATTGATCT+CGG	-	Chr7:94532476-94532495	MsG0780041732.01.T01:CDS	30.0%
	TAAAGAAAAATACCTGGAGA+TGG	+	Chr7:94533155-94533174	None:intergenic	30.0%
	TAAGAATGAAGATGATGTTG+AGG	-	Chr7:94532691-94532710	MsG0780041732.01.T01:CDS	30.0%
	TTGCATAACTTACTTATGAC+AGG	+	Chr7:94532354-94532373	None:intergenic	30.0%
	TTTAACTGCATCCAAATTGT+TGG	-	Chr7:94532103-94532122	MsG0780041732.01.T01:intron	30.0%
!	AAAGAAAAAGAAGCATACCA+TGG	+	Chr7:94531662-94531681	None:intergenic	30.0%
!	CAAAACTTGTCTCAAGATTT+TGG	-	Chr7:94531611-94531630	MsG0780041732.01.T01:CDS	30.0%
!	CATTTTCTTCGATACTGTTT+AGG	-	Chr7:94531953-94531972	MsG0780041732.01.T01:intron	30.0%
!!!	AGTTGTTATTTTGTTTGCAG+AGG	-	Chr7:94533065-94533084	MsG0780041732.01.T01:intron	30.0%
	AAACTTGTGGTGTAAGTCAT+TGG	+	Chr7:94532783-94532802	None:intergenic	35.0%
	AAATGTAAACTAGGTAGGTG+TGG	+	Chr7:94533291-94533310	None:intergenic	35.0%
	AACCCATGTATATTGACACT+AGG	+	Chr7:94533473-94533492	None:intergenic	35.0%
	ATTACAATGCCTTAGCCAAA+AGG	+	Chr7:94531827-94531846	None:intergenic	35.0%
	ATTGCTTTCATAACCAGCTT+AGG	+	Chr7:94532470-94532489	None:intergenic	35.0%
	CCATTTCCACTATCAGAATT+AGG	+	Chr7:94532608-94532627	None:intergenic	35.0%
	CTCCTAGTGTCAATATACAT+GGG	-	Chr7:94533468-94533487	MsG0780041732.01.T01:CDS	35.0%
	GAAAAACCATCGAGCTAATA+TGG	-	Chr7:94533400-94533419	MsG0780041732.01.T01:CDS	35.0%
	GAAACCTGTTCAATTGAAAG+AGG	-	Chr7:94532517-94532536	MsG0780041732.01.T01:CDS	35.0%
	TAATGTTCATATGCCAGACA+TGG	-	Chr7:94532284-94532303	MsG0780041732.01.T01:CDS	35.0%
	TAGTGTCAATATACATGGGT+TGG	-	Chr7:94533472-94533491	MsG0780041732.01.T01:exon	35.0%
	TGAAAATGATGATCCTAAGC+TGG	-	Chr7:94532454-94532473	MsG0780041732.01.T01:CDS	35.0%
	TGAAAGAGGTGAAGATGATT+TGG	-	Chr7:94532531-94532550	MsG0780041732.01.T01:CDS	35.0%
	TTCACCTCTTTCAATTGAAC+AGG	+	Chr7:94532524-94532543	None:intergenic	35.0%
	TTTAAGCTTCTTGAGCTTGT+TGG	-	Chr7:94532312-94532331	MsG0780041732.01.T01:CDS	35.0%
!	TTTTGCACATTGAAAGCAGA+GGG	+	Chr7:94532847-94532866	None:intergenic	35.0%
!	TTTTTGCACATTGAAAGCAG+AGG	+	Chr7:94532848-94532867	None:intergenic	35.0%
!!	CCTAATTCTGATAGTGGAAA+TGG	-	Chr7:94532605-94532624	MsG0780041732.01.T01:intron	35.0%
!!	TCTTTAGATCCTTTTGGCTA+AGG	-	Chr7:94531815-94531834	MsG0780041732.01.T01:intron	35.0%
!!	TTATTTTGTTTGCAGAGGCT+AGG	-	Chr7:94533070-94533089	MsG0780041732.01.T01:intron	35.0%
	AAACCATCGAGCTAATATGG+TGG	-	Chr7:94533403-94533422	MsG0780041732.01.T01:CDS	40.0%
	AGCTTAAATCCATCCATGTC+TGG	+	Chr7:94532300-94532319	None:intergenic	40.0%
	ATGACACTGACACAATGACA+CGG	-	Chr7:94533189-94533208	MsG0780041732.01.T01:intron	40.0%
	CCATGTATATTGACACTAGG+AGG	+	Chr7:94533470-94533489	None:intergenic	40.0%
	CCTCCTAGTGTCAATATACA+TGG	-	Chr7:94533467-94533486	MsG0780041732.01.T01:CDS	40.0%
	CTTGTCGCGGTTAACAAATT+TGG	-	Chr7:94532803-94532822	MsG0780041732.01.T01:CDS	40.0%
	GATGTGCCTAATTCTGATAG+TGG	-	Chr7:94532599-94532618	MsG0780041732.01.T01:intron	40.0%
	TTGTTGGATTCATTCGATGC+AGG	-	Chr7:94532119-94532138	MsG0780041732.01.T01:intron	40.0%
!!	CGTCATAGCAAGAGTATTTG+AGG	+	Chr7:94533014-94533033	None:intergenic	40.0%
!!	TTTTGGAGAGACTTCTCGAA+AGG	-	Chr7:94531628-94531647	MsG0780041732.01.T01:CDS	40.0%
	ACACCACAAGTTTCTTGTCG+CGG	-	Chr7:94532790-94532809	MsG0780041732.01.T01:CDS	45.0%
	CAACGAAATCGAGGCTTCTT+CGG	+	Chr7:94532758-94532777	None:intergenic	45.0%
	GAAAAATACCTGGAGATGGC+TGG	+	Chr7:94533151-94533170	None:intergenic	45.0%
	GCAGCGACACTTCTAATCTA+AGG	+	Chr7:94531774-94531793	None:intergenic	45.0%
	GTTCATATGCCAGACATGGA+TGG	-	Chr7:94532288-94532307	MsG0780041732.01.T01:CDS	45.0%
	TAACCGCGACAAGAAACTTG+TGG	+	Chr7:94532796-94532815	None:intergenic	45.0%
	TAGCCACCATATTAGCTCGA+TGG	+	Chr7:94533409-94533428	None:intergenic	45.0%
	TCATTGGACCAACGAAATCG+AGG	+	Chr7:94532767-94532786	None:intergenic	45.0%
!	TTCAGTGCTATTCGTGCACT+TGG	+	Chr7:94532222-94532241	None:intergenic	45.0%
!!	CTCGAAAGGTGTCAATACCA+TGG	-	Chr7:94531642-94531661	MsG0780041732.01.T01:CDS	45.0%
!!	TGAGCTTGTTGGACTTGAGA+TGG	-	Chr7:94532323-94532342	MsG0780041732.01.T01:CDS	45.0%
!!	ATAATATTAATATCAAAATT+GGG	+	Chr7:94532949-94532968	None:intergenic	5.0%
	AATCATAAGGGACGGTGCGT+CGG	-	Chr7:94531744-94531763	MsG0780041732.01.T01:intron	50.0%
	CGAAGAAGCCTCGATTTCGT+TGG	-	Chr7:94532756-94532775	MsG0780041732.01.T01:CDS	50.0%
	CGAGCTAATATGGTGGCTAG+TGG	-	Chr7:94533410-94533429	MsG0780041732.01.T01:CDS	50.0%
	TATTCGTGCACTTGGAGCAG+TGG	+	Chr7:94532214-94532233	None:intergenic	50.0%
	ACATGTGGCCAGCCATCTCC+AGG	-	Chr7:94533140-94533159	MsG0780041732.01.T01:intron	60.0%
	CGAGGCTTCTTCGGCGCAGT+TGG	+	Chr7:94532749-94532768	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	94531533	94533517	94531533	ID=MsG0780041732.01;Name=MsG0780041732.01
Chr7	mRNA	94531533	94533517	94531533	ID=MsG0780041732.01.T01;Parent=MsG0780041732.01;Name=MsG0780041732.01.T01;_AED=0.08;_eAED=0.09;_QI=28\|0\|0\|1\|1\|0.8\|5\|0\|291
Chr7	exon	94533387	94533517	94533387	ID=MsG0780041732.01.T01:exon:20760;Parent=MsG0780041732.01.T01
Chr7	exon	94532690	94532842	94532690	ID=MsG0780041732.01.T01:exon:20759;Parent=MsG0780041732.01.T01
Chr7	exon	94532217	94532603	94532217	ID=MsG0780041732.01.T01:exon:20758;Parent=MsG0780041732.01.T01
Chr7	exon	94531889	94531965	94531889	ID=MsG0780041732.01.T01:exon:20757;Parent=MsG0780041732.01.T01
Chr7	exon	94531533	94531685	94531533	ID=MsG0780041732.01.T01:exon:20756;Parent=MsG0780041732.01.T01
Chr7	five_prime_UTR	94533490	94533517	94533490	ID=MsG0780041732.01.T01:five_prime_utr;Parent=MsG0780041732.01.T01
Chr7	CDS	94533387	94533489	94533387	ID=MsG0780041732.01.T01:cds;Parent=MsG0780041732.01.T01
Chr7	CDS	94532690	94532842	94532690	ID=MsG0780041732.01.T01:cds;Parent=MsG0780041732.01.T01
Chr7	CDS	94532217	94532603	94532217	ID=MsG0780041732.01.T01:cds;Parent=MsG0780041732.01.T01
Chr7	CDS	94531889	94531965	94531889	ID=MsG0780041732.01.T01:cds;Parent=MsG0780041732.01.T01
Chr7	CDS	94531533	94531685	94531533	ID=MsG0780041732.01.T01:cds;Parent=MsG0780041732.01.T01

Gene Sequence

>MsG0780041732.01.T01

ATGAATGATGAGTTTCGAATTGGAATGAATATTCTTGCTGTTGATGATGACAAAACTTGTCTCAAGATTTTGGAGAGACTTCTCGAAAGGTGTCAATACCATGTAACCACTGCTCCAAGTGCACGAATAGCACTGAATTTGTTAAGAGAAAACAAAAACAATTTTGACCTAGTAATGAGTAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACCTACCTGTCATAATGTTTTCTGAAAATGATGATCCTAAGCTGGTTATGAAAGCAATTGATCTCGGTGCTTGTGATTATCTGCTGAAACCTGTTCAATTGAAAGAGGTGAAGATGATTTGGCAACATGTAATCAGAAAGAAGAAAACTAGCAAAAGAAGCAATCACGATGTGCCTAATTCTGATAGTGGAAATGGAATAGATTCAACTGTGACAAAAAATTCTGATAAAATTGAAAAGCCATCTAGAAAAAGAAAGGATAAGAATGAAGATGATGTTGAGGAAGAGAATGAGTATGATCATGAAAATGATGGTCCAACTGCGCCGAAGAAGCCTCGATTTCGTTGGTCCAATGACTTACACCACAAGTTTCTTGTCGCGGTTAACAAATTTGGCGTTGAAAAGGCTAGGCCACAAAAGATTCTTAACTTGATGAATGTTGAAAATCTTACAAAGGAACATGTGGCCAGCCATCTCCAGAAATATAGACTAAAGTTGAAAAGTAGTAGTTATGGGAAAAACCATCGAGCTAATATGGTGGCTAGTGGTTCTGATACATCATCTCACTCAAGAATTGACACTCCTCCTAGTGTCAATATACATGGGTTGGCTACTCTTGACTTAAACAACTCC

Protein sequence

>MsG0780041732.01.T01

MNDEFRIGMNILAVDDDKTCLKILERLLERCQYHVTTAPSARIALNLLRENKNNFDLVMSNVHMPDMDGFKLLELVGLEMDLPVIMFSENDDPKLVMKAIDLGACDYLLKPVQLKEVKMIWQHVIRKKKTSKRSNHDVPNSDSGNGIDSTVTKNSDKIEKPSRKRKDKNEDDVEEENEYDHENDGPTAPKKPRFRWSNDLHHKFLVAVNKFGVEKARPQKILNLMNVENLTKEHVASHLQKYRLKLKSSSYGKNHRANMVASGSDTSSHSRIDTPPSVNIHGLATLDLNNS